>input_sequence_36745
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-------------------------------------------------------------------------ATGAGGT
GGTTCGG----TTCCTATCAGTTCTTAGTCTGATCCTCTTGG-ATTAACATGGTTTGTGGCTACCGTGTGATGCAGGG--
---TAGGCTGCTCATGTACTATATCTGTTACCTTTC----GATAGCTAAAGTATGTCCATTCATTTCAAGTTCGTTTGCC
AGGTGGTTCGTCAGCAGTTGGTTGGTTGCAACTTTAGA-------GTGTAGTTGCAATCGCTGTTTAGACGTG-------
----GGATGTTTTGCGCTTCATTCAGATGCTCTTCTTTTGACATTGTATATGCTCTGCT-TTGCAGTAAGCTATCGACCG
ACGCACTCAAGGAGGCCATCACCCAGGTGGTGGCGGATGCCAAGGAGAAGAACAGGAAGTTCACCGAGACCGTCGAGCTC
CAGATCGGCCTCAAGAACTACGACCCGCAAAAGGACAAGCGTTTCAGCGGCTCCGTCAAGCTGCCCCACGTCCCTCGCCC
CAAGATGAGGGTCTGCATGCTCGGTGACGCCCAGCATGTGGGAGAGGTATGTACCTCTTACTGCTACTGCTAGTCAGTTC
TCCATTTCCTCTGTAACATAGATGGTGATGTAGTG-TTATTGTGTTCGTGCCGTGAGCAATCTTTGGTCGTGAGAAATTT
GAGCTGTGCTGATAACTTTGTTACATCTAATGAATGTTACTTGCACGCTAGTATTGTGGGCTCTTTAAGCTGATAGTAGT
GTGATGCTGTGATTACAATCTACTCTTTACATGCGTTATG----GCATCATGCCATGGAATGTTGACCTGTTCTAGAATC
TTCTTTTATTATTATATCGTTGTC--------------------------------------------------------
------------------TAGTCTTAAGCTAGTGTAATTCTACAAGGGAT----TAAATTTATTGGGCTCACTTGAACCC
AACAACAATGAATGCCTCCGCCTTTGTGTAGCTGATATGACAACTAACTTTGTTACATCA-CATGAATGCTATTTGTATG
TAAGAACTGTAGTCT--GAAGTGATAGCTGGATCATTGTTCTTGCAGCCTTTCTCATAGCTTATGTTTATTTTTAGTATT
TACATTTGCTTATTCTCCTAATTGCAGGCTGAAAAGATTGGTCTTGATTCCATGGATGTTGAAGCTCTTAAGAAGATGAA
CAAGAACAAGAAGCTTGTCAAGAGGCTTGCCAAGAAGTACCATGCTTTCTTGGCCTCGGAGGCTATCATCAAGCAGATTC
CACGTCTCCTTGGTCCTGGTCTCAACAAGGCAGGCAAGTATTCTGATCTGTCTCTGTTAGTTTACTTGTCTCACAGCTGG
TTGGTTTACTTCTCGTGGTTAGAAGT-AGAATGCCCTTTCTTTGGTCATGTCTTCATGTAGATGCGTGTTTTTATGTCTC
TTCTGTCTTGGGCTTATTGATTGTTATATTTATGGGTTTATTTTTTCTGTAAACAATTACTTTC------TTGGTGAACC
TTCTAAGCATGTTTACTTGCACTTTGTCTCGAGATGCATTAGAAGCCTCTTTTGTCTGGTGGATACGTATCCATATGGCC
GTGCACAGTTGCAGACAACCCATATAATTTTCATTTGCATATGTGCTTTTGCAGAAGTAATCCATTGTCCGACATTCTGA
CATTTTCTAGAGCATAACTGCATTATATGGCG-TTCTAATATTCTGTGCCCTATCTGATGAGAGTTC-CATACTTCATCC
TTGTTGTGCATAACATAGACGGCTTCACCATCCT-GTTCTGATCATGCATACTGAGTCGTTTGTGCTGGTGGCATTACAG
GAAAGTTCCCGACCCTGGTTTCTCACCAGGAGTCTCTGGAAGCCAAGGTGAACGAGACGAAAGCGACAATCAAGTTCCAG
CTCAAGAAGGTGCTGTGCATGGGCGTCGCGGTGGGCAACCTGTCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGAT
GAGCGTCAACTTCCTGGTTTCCCTGCTCAAGAAGAACTGGCAGAACGTGAGTCCCGTTCAGACCTCGCATCCTCTTGAGC
TTCTGTTTT-GTCTTCTCCCGTGCCAGAGTGCAAGTGAAACCTTGCACCCTCTGAGTTTCTGTTCTATCTGCTCCCGCGT
CGAGTGCAAGTGATTGATTTTGCCCAAAAGACTCAAGTTAGACAGGATATGACATGACATTGGTTATTCCTTTGCA-TTT
GCAGGTGAGGTGTCTGTACATCAAGAGCACCATGGGGAAGCCGGTCCGGGTGTTCTAA----------------------
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>chr4D_1_TraesCS4D01G007500
ACGGCCGTGGCCCCATCCATGCGCCGAATCCAACGGCCGGCAGCGACCGAGGGAGCAGCCGCACCTGCCACGCCATCCCT
CTGCCCCAAAGCCTGGGGCTTCCACAGGCCACGAGAGCCACAGCCACTCCTCCTCCCCGCGCCGCCCCTCCCCAAACCCA
AACCCTAGGCCGCACCAGGTAGGCCCCTCTCCACCT------------------------------------CGTCCGCT
CCCCGCCGCCGGGCATCTCACCGTGTTTCTATCTCCCTTTCCCCGCAGGTGAACCGGCGCCCGGTGAGTCGGTCCGTCCC
CGCGGCGAGCCATGAGGTAACACCGCCCGCCCGCCGCCG--ATACCCCGCTTCCCCGTGCGATCGATTGATTGGCTCCCC
GCGAGGG--CGACCGTCGGAT----------------------------------------------------GTATTTC
GTGCTGGGAGAACCGGCGCCTACCAGAGATCCGCGAGGTCCTCGCTCGAGCGGACACCGAGATGGATCGATAGATGGATC
TCGCGCGTTTTTCT-TAGACCGAATGAAATTCTGATGAATATAAACGGCG-TTC---TATGGTTCTGATGAGTGGCAGGA
ATTCGCTTGTC-GGAGATTTGCTAGGTAGCAGTCCCGTTGTCTAGTTACCTGGGGTTTACATGCATGATTTTGTGATAAG
ATCTCTGCCGACCTCCCTGCTGCGGGCGCGTCAGACACCCTTCCCGTGCTGTCTCTTACTTTAAG---AC-GTTGGCATA
TCTGCCGTATCTCGATTAGTAATCAGCTGCCTGTTTGCATCTGTGATGTGTAGAATCAATCCTTCTTCTGGTAAATAGAT
GGGGCTTATTTATACTCCTTTGTGGTGGTAATTAACATTTGGAGTTTGGTACGTACGTAGCGGTTCTTCGTCT-AGTTGT
CTTGGATCATACTGTG-AGACGTTACCGGTTTCGTGTCTGGAGTAG-----ATCA----GTTTGCTGTTTGCATCTATGA
GTTGTAGAAGAATCTACCACTGCTGCTCTGGTAAATAGTTGGGTGTTTATTCTCCTTTGTGGCCTCAATTAACATGAGGT
GGTTCGG----TTCCTATCAGTTCTTAGTCTGATCCTCTTGG-ATTAACATGGTTTGTGGCTACCGTGTGATGCAGGG--
---TAGGCTGCTCATGTACTATATCTGTTACCTTTC----GATAGCTAAAGTATGTCCATTCATTTCAAGTTCGTTTGCC
AGGTGGTTCGTCAGCAGTTGGTTGGTTGCAACTTTAGA-------GTGTAGTTGCAATCGCTGTTTAGACGTG-------
----GGATGTTTTGCGCTTCATTCAGATGCTCTTCTTTTGACATTGTATATGCTCTGCT-TTGCAGTAAGCTATCGACCG
ACGCACTCAAGGAGGCCATCACCCAGGTGGTGGCGGATGCCAAGGAGAAGAACAGGAAGTTCACCGAGACCGTCGAGCTC
CAGATCGGCCTCAAGAACTACGACCCGCAAAAGGACAAGCGTTTCAGCGGCTCCGTCAAGCTGCCCCACGTCCCTCGCCC
CAAGATGAGGGTCTGCATGCTCGGTGACGCCCAGCATGTGGGAGAGGTATGTACCTCTTACTGCTACTGCTAGTCAGTTC
TCCATTTCCTCTGTAACATAGATGGTGATGTAGTG-TTATTGTGTTCGTGCCGTGAGCAATCTTTGGTCGTGAGAAATTT
GAGCTGTGCTGATAACTTTGTTACATCTAATGAATGTTACTTGCACGCTAGTATTGTGGGCTCTTTAAGCTGATAGTAGT
GTGATGCTGTGATTACAATCTACTCTTTACATGCGTTATG----GCATCATGCCATGGAATGTTGACCTGTTCTAGAATC
TTCTTTTATTATTATATCGTTGTC--------------------------------------------------------
------------------TAGTCTTAAGCTAGTGTAATTCTACAAGGGAT----TAAATTTATTGGGCTCACTTGAACCC
AACAACAATGAATGCCTCCGCCTTTGTGTAGCTGATATGACAACTAACTTTGTTACATCA-CATGAATGCTATTTGTATG
TAAGAACTGTAGTCT--GAAGTGATAGCTGGATCATTGTTCTTGCAGCCTTTCTCATAGCTTATGTTTATTTTTAGTATT
TACATTTGCTTATTCTCCTAATTGCAGGCTGAAAAGATTGGTCTTGATTCCATGGATGTTGAAGCTCTTAAGAAGATGAA
CAAGAACAAGAAGCTTGTCAAGAGGCTTGCCAAGAAGTACCATGCTTTCTTGGCCTCGGAGGCTATCATCAAGCAGATTC
CACGTCTCCTTGGTCCTGGTCTCAACAAGGCAGGCAAGTATTCTGATCTGTCTCTGTTAGTTTACTTGTCTCACAGCTGG
TTGGTTTACTTCTCGTGGTTAGAAGT-AGAATGCCCTTTCTTTGGTCATGTCTTCATGTAGATGCGTGTTTTTATGTCTC
TTCTGTCTTGGGCTTATTGATTGTTATATTTATGGGTTTATTTTTTCTGTAAACAATTACTTTC------TTGGTGAACC
TTCTAAGCATGTTTACTTGCACTTTGTCTCGAGATGCATTAGAAGCCTCTTTTGTCTGGTGGATACGTATCCATATGGCC
GTGCACAGTTGCAGACAACCCATATAATTTTCATTTGCATATGTGCTTTTGCAGAAGTAATCCATTGTCCGACATTCTGA
CATTTTCTAGAGCATAACTGCATTATATGGCG-TTCTAATATTCTGTGCCCTATCTGATGAGAGTTC-CATACTTCATCC
TTGTTGTGCATAACATAGACGGCTTCACCATCCT-GTTCTGATCATGCATACTGAGTCGTTTGTGCTGGTGGCATTACAG
GAAAGTTCCCGACCCTGGTTTCTCACCAGGAGTCTCTGGAAGCCAAGGTGAACGAGACGAAAGCGACAATCAAGTTCCAG
CTCAAGAAGGTGCTGTGCATGGGCGTCGCGGTGGGCAACCTGTCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGAT
GAGCGTCAACTTCCTGGTTTCCCTGCTCAAGAAGAACTGGCAGAACGTGAGTCCCGTTCAGACCTCGCATCCTCTTGAGC
TTCTGTTTT-GTCTTCTCCCGTGCCAGAGTGCAAGTGAAACCTTGCACCCTCTGAGTTTCTGTTCTATCTGCTCCCGCGT
CGAGTGCAAGTGATTGATTTTGCCCAAAAGACTCAAGTTAGACAGGATATGACATGACATTGGTTATTCCTTTGCA-TTT
GCAGGTGAGGTGTCTGTACATCAAGAGCACCATGGGGAAGCCGGTCCGGGTGTTCTAAGCTC-GTGCCCCTGCCGCCC--
---TATATCAATGCTACCTACAGTACTGGACCTCCTTACTATG-TTCAAGCTTAAATATGTCTACT---TGTCGTAGTTT
TTATCGAATTTTGCGCGTGTCCTGGTTAATGAAGATGATGAAA-GACCACTACTGTTTCCCCTGAGCTGTGATTCTGATG
GAACAATATG-TTCATCAAGATCATTCCAGTGCCTGTTATATATAATGTTGTGGTTGCATGTTTTGTACCCTCGTATGTT
TGTCGGGTCTCTGATGCATCTGTTTTTCGTCGTGCCTTTCTATATGATATGTACCCGTATATAGGGTTAGAATAACTTGT
TGGATACACTTGATGATCCGTTGGAGCAGAGCTGGCAAAACCTGATGCTTTCGGCTGTTGGTTTG-CTTCAGCCTCTGCC
TAGCTAGCAGCAGCATTTTTGAAATTTCTCAAATCCTCAATACGAATGATGTGCGATATTGCATGCAAATTAACTAGTTT
TGAGAGGTTCAGCAACTTGCATTGCGGGATCAACAACAAATCAGATACAACCTGACTAATAGGAGTTGTTGATACCGCAA
CAACAAAGGATGAACGCCGAACCTTTGTCATGGAACAGCGGATTTTTAATCTTAATCTGGAGGATTTAGGATATTCATAC
CAAAGTTCTTAATATAAGAATTACAAGATCCTCATGGCCCTATGGCAGCTATTCAATGTCTTCGGAGCACTTGTTGTCAT
GCTGAACACTAAGCCATGCTGCGTGGAAAGAACATCATTGAAGACTACTCTTGTGTCATGAGTGGGCAACATTCTAGAGA
GTAGAGACTATGGATCATTTTGCCCAGGCCTCCTGACACTATTTATGGTCATATTGTGAACAGTAACCGGTAAAAAAATT
GTAAATTGTTTCCAAAAATTCAGATTTTTTGTGTGGATGTCAGTGTTAGTGTCGCAAGCAAGCTTGAGAATTTTCATGCG
AGACGGAGCAATAGTGTTTCGGCGGTGAAAA
>chr4B_1
ACGGCCGTGGCTCCATCCACGCGCCGAATCCAACGGCCGGCAGCGGCCGAGGGAGCAACCGCAGCCGCCACGGCATCCCT
CTCCCCCAAAGCCTGGGGTTTCCACAGGCCACGAGAGCCACAGCCAGTCCTCCTCCCCGCGCCGCCGCTCCG------CA
AACCCTAGGCCGCACCAGGTAGGCCATCCCCTCCGGCCCCGCCGCCCGCTCCCCTCTCGACCTCGTCCGCACCGCCCGCT
CTCCGCCGCCGGCCATCTCACCGTGTTTGTCTATCCCTTTCCCCGCAGGTGAACCGGCGACCGGCGAATCAACCCGTCCC
CGCGGCGAGCCATGAGGTAACACCGCCGC-----------CGTTCCCCGCTTCCCCGTCCGTTCGATTGATTGGTTTCCC
GCGA--GAACGACCGTCGGAT----------------------------------------------------GTAGTTC
GTGCTGGGAGATCTAGCGCCTCCTAGAGATCCGA----------------------------------GATGGATAGATA
GATAATAGATGGATCTCGCG------------------------------------------------------------
--------------------------------------CGTCTAATTACCTGGGGTTTACATACATGATTTTGTGAT---
--------------------------TGGATCAGACACTGTTCCCGTGCTGTCTGTTACTTTTAACACAC-GTTACCAAA
TTCGTCGCAGCTGGAGTGGTAATCAGTTGGCTGTTTGCATCTATGAGGTCTAGAACCAACCGCTCTTCCGGTTAATAGAC
GGGGTTTGTTTATACTCCTTTGTGGCGGTGATTAACACTTGGAGTTTGGCAGGTA----GCAGTTCTTCTTTTAAGTTGT
CTTGGATATTACTGTG-AGAAGTTACCGGTTTCGTCTCTGGAGTAATGGTAGTAATCGGGTTTGCTGTTTGCATCTATGA
GCTGTAGAAGAATCTACCGCTGCTGCTCTGGTAAGCAGTCGGGTGTTTATACTCCTTTAGGCCGTCAATTAACATGAGGT
GGTTCGG----TTCGTATCAGTTCCTAGTCTGGTTCTCTTGG-ATTTGCATGGTTTGTGGCTACCGTGTGATGCAGCG--
---TAGGCTGCTCGTGTAC--TATCTGTTACCTTTC----GATAGCCAAAGTATGTCCGT---TTTCAAGTTGGTTTGCC
AGGTAGTTCGTCAGCAGTTGGTT----GCAACTTTAGACTTCCGTGTGTAGTTGCAATCGCTGTTTAGGTGTG-------
----GGATGTTTTGCGCTTCATTCGAATGCTCTTGTTTTGACATTGTATATGCTCTGCT-TCGCAGTAAGCTATCGACCG
ACGCCCTCAAGGAGGCCATCACCCAGGTGGTGGCGGACGCCAAGGAGAAGAACAGGAAGTTCACCGAGACGGTCGAGCTC
CAGATCGGCCTCAAGAACTACGACCCGCAAAAGGACAAGCGTTTCAGCGGTTCCGTCAAGCTGCCCCATGTCCCTCGCCC
CAAGATGAGGGTCTGCATGCTCGGTGATGCCCAGCATGTGGGAGAGGTATGGACCTTTTATTGCTACTGCTAGTCAGTTC
TCCTTTTCCTCTGTAACATAGATGCTGATGTTAGTTTTATCGTGTTCGCGCCGTGAGCAATCGCTGCTCGTGAG-AATTT
GAGCTGTGCTGATAACTTTGTTACATCTGATGAATTTTTCTTGCATGCTAGTATTGTGTGCTCTTTAAGATGATAGTAGT
GTGATACTGCGATTGCACTTTACTCTTCACATGAGTTATTATTTGCATCATGCCGTCAAAATGCC---------AGAACC
TTCCTTTGTTTTTGTATCGGTGTCTAGCTACAGGGGCATGGCTAGGATTATTATTCATCGGGTCCAGCTCTGCTAAACAG
TGGGATTGGTTCTTTGCTTAGTCTTAAGCTAGTTT-ATTCTACAAGTGATATGCTAAATTTATTTTGTTCACTTGAACCC
AGCACCAATGAGTGGCTCCGCCCATGCCTTGCTAATATGACAAGATTAGTCTTT-------------TGCTATTTGTATG
TAACAACTGTAGTCTTTGAAGTGATAGCTGGATCAATGTTCTTTTAACCTTTCTCATA----------------------
-------GCTTATTCTCCTGATTGCAGGCTGAAAAGATTGGTCTTGATTCCATGGATGTTGAAGCTCTTAAGAAGATGAA
CAAGAACAAGAAGCTTGTCAAGAGGCTTGCCAAGAAGTACCATGCTTTCTTGGCCTCGGAGGCTATCATCAAGCAGATTC
CACGTCTCCTTGGTCCTGGTCTCAACAAGGCAGGCAAGTATCCTGATTTGTCTCTGTTAGTTTGCTTGTCTCTCAGCTCG
GTTGTTTACTTCTCGCGGTTAGAAGTTAGCATACCCTTTCTTTGGTCATGTCTTCATGTAGATGCGTCTCTTTATATCTT
TTCTGTCTTGGGCTTAGAAATTGTTATATTTATGGGTTTATCATTTCTGTGAACAATTATCTGCTACTGGTTGCTGAACC
TTGTAAGCATGCTGG-----------------------------GCCTCTTTTGTCAGGTCT-------TCCACATGATT
GCGCACAGTTGCAGACAATTCATTA-----------GCGTCCATGCTTTTATAGAACAGCTAATCTATTGTTGGT-----
-ATTTTGTAGAGCTTAGCTGTGTTATATGGCAATTCTAATATGCTATGCCCTGTCTGAAGAGAGTTTGTAATT---ATCC
TTGTTGCACATAACATAGACAGCTTCATGATCCTTGTTCTGATCCTGCAAACTGAGTGGTGTGTGCTGGTGGCATTGCAG
GAAAGTTCCCGACCCTGGTTTCTCACCAGGAGTCTCTGGAAGCCAAGGTGAATGAGACGAAAGCCACAATCAAGTTCCAG
CTCAAGAAGGTGCTGTGCATGGGCGTCGCGGTGGGCAACCTGTCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGAT
GAGCGTCAACTTCCTGGTTTCCCTGCTCAAGAAGAATTGGCAGAACGTGAGTCCCGTTCAGACCTCGCTCCCTCTTGAGC
TTCTGTTTTTGTCTTCTCCCGTGCCAGAGTTCAAGTGAAACCTTGCACCCTCTGAGTTTCTGTCCCGTCTGCTCCCGCGT
CGAGTGCAAG----TGATTTTGCCCGAAAGACTCAAGTTGGACAGGATATGACATGACATTGGTTATTCCTTTGCA-TTT
GCAGGTGAGGTGCCTGTACATCAAGAGCACCATGGGGAAGCCGGTCCGGGTGTTCTAAGCTC-GTGCCCCTGCCGCCCCA
CCCTATATCAATGCTACCTACAGTACTGGACCTCCTTACTATGTTTCAAGCTCAAATATGTCTACT---CGTCGTAGTTT
TTATCGAATTTTGCGCGTGTCCTGGTTAATGAAGATGATGAAAAGACCACTACTGTTTCCCCTGAGTTGTGATTCTGATG
GAACATTATGTTTCATCAAGATCATTCCAGTACCTGTTATATATAATGTTGTGGTTGCATGTTTTGTACCCTTGTATGTT
TGTCGGGTCTCTGACGCATCTGTTTGCCGTCGTGCCTTTCTATATGAC-------------------TAGCATAACTTGT
TGGATACACTCGATCCGTTGGT---GCAGAGTTGGCAAATCCTGATGCTTTCGACTGTTGGTTTTACTTCAGCCTCTGCC
TAGCTAGCAGCAGCATTTTTGAAATTTCTCAAACCCTCAGTACGAACGAT---------------CAAATTAACTATTCT
TGAGAGGTTCAGCAGCTCGCATTGCGGGATCAACAACAAATCAGATACAACCTGACTGATAGGAGTTGTTGACACCGCAA
CAACAAAGGA----------------------------------------------------------------------
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>chr4A_247
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------------------------------------------CCGTAGGTGAATCGGCGACCGATGAATCGACCCGTCCC
CGCGGCGAGCCATGAGGTAACCCCGCCTGCCCGCCGTCAACATTCCCCGCCTCTTCATGCGATCTCT--ATTGGTTTCCC
GCGA--G--CGACCGTTGGACGGGGGGCGACGCGGGCGCGCTCTGCCTGGATGTGGATCGTCCCGTCCCAGCCGTAGCTC
GTGCTGGGAAAACTAGCGCCTCCTAGAGATCCGCAAGGT-CTAGCTTGAGCGGACGCCGATATGGATGGATGGATAGATA
GATCTTGCGCCTTTCTAGACTGAGCAAAATTTTGATGAATATAAACGGCA-TTTTTTTATGGTTC---TGAGTGGTGGCC
ATTCACTTGTTTGGAGATTCGATTAATATCAGTCCCATCGTCTAGTTACCTGGGGTTTACATACGTGATTTTGTGAC-AG
ATGTTCACCTACATGCCTGCTGTGGGTGCATCAGACACTGTTCTCGTGCTCTCTGTTACTTTAAA---AAAGTTACCAAA
TTCT---TATCTGGACTAGTAATCAGTTGGCTGTTTGCATCTATGAGGTGTAGAATCAACAACCCTTCTGATAAATAGAT
GTTGTCTATGTATGCTCCTTTATGGTGGTAATTAACATTTGGAGTTTGGTACGTA----GAAGTTCTTTGTCT-ACTTGT
CTTGGATCTTACTGTTAAGACGTTGCTGGTT-CATGTCTGGAGTAATAGTAATCA----GTTTGCTGTTTGC--------
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>chr1A_247
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------------------------------------------CCGCAGGTGAATCGGCGACTGGTGAATCGACCCGTCCC
CGCGGCGAGCCATGAGGTAACCCTGCCTGCCCGCCGTCAACATTCCCCGCCTCTCTATGCGATCGCT--ATTGGTTTCCT
GCGA--G--CGACCGTCGGACGGGGGCCGACGCGGGCGCGCTCTGCCTGGATGTAGATCATCCCGTCCCAGCCGTAGCTC
GTGCTGGGACAACCAGCGCCTCCTAGAGATCCGCGAGGT-CTCGCTTGAGCGGACGCCGATATGGATGGATGGATAGATA
GATCTTGCACCTTTCTAGACTGAGCAAAATTCTGATGAATATAAACGGCATTTTTTTTATGGTTC---TGAGTGGCGGCC
ATTCACTTGTTTG----------TAATATCAGTCCCATCGTCTAGTTACCTGGGGTTTACATACGTGATTTTGTGAC-AG
ATCTCCACCTACATGCCTGCTATGGGTGCATCAGACACTGTTCCCGTGCTCTCTGTTACTTTTAA---AAAGTTACCAAA
TTCT---TATCTGGACTAGTAATCAGTTGGTTGTTTGCATCTATGAGGTGTAGAATCAACAGCCCTTCTGAAAAATAGAT
GTTGTTTATGTATACTCCTTTATGGTGGTAATTAACATTTGGAGTTTGGTACGTA----GCAGTTCTTTGTCT-ACTTGT
CGTGGATCTTACTGTTAAGACGTTGCTGGTTTCGTGTCTGGAGTAATAGTAATCA----GTTTGCTGTTTGC--------
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>chrUn_387
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------------------------------------------------------------------------------TC
GTGCTGGGACAACCAGCGCCTCCTAGAGATCCGCGAGGT-CTCGCTTGAGCGGACGCCGATATGGATGGATGGATAGATA
GATCTTGCACCTTTCTAGACTGAGCAAAATTCTGATGAATATAAACGGCA-TTTTTTTATGGTTC---TGAGTGGCGGCC
ATTCACTTGTTTGGAGATTCGATTAATATCAGTCCCATCATCTAGTTACCTGGGGTTTACATACGTGATTTTGTGAC-AG
ATCTCCACGTACATGCCTGCTATGGGTGCATCAAACACTGTTCCCGTGCTCTCTGTTACTTTTAA---AAAGTTACCAAA
TTCT---TATCTGGACTAGTAATCAGTTGGTTGTTTGCATCTATGAGGTGTAGAATCAACAGCCCTTCTGATAAATAGAT
GTTGTTTATGTATACTCCTTTATGGTGGTAATTAACATTTGGAGTTTGGTACGTA----GCAGTTCTTTGTCT-ACTTGT
CTTGGATCTTACTGTTAAGACGTTGCTGGTTTCATGTCTGGAGTAATAGTAATCA----GTTTGCTGTTTGC--------
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>chr7D_387
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------------------------------------------------------------------------------TC
GTGCT-GGGCAACCAGCGCCTCCTAGAGATCCGCGAGGT-CTCG----AGCGGACGCCGATATGGATGGATGGATAGATA
GATCTTGCGCCTTTCTAGACTGAGCAAAATTCTGATGAATATAAACGGCA---TTTTTATGGTTC---TGAGTGGCGGCC
ATTCACTTGTTTGGAGATTCGATTAATATCAGTCCCATCGTCTAGTTACCTGGGGTTTACATACGTGATTTTGTGAC-AG
ATCTCCACCTACATGCCTGTTGTAGGTGCATCAGACACTGTTCCCGTGCTCTCTGTTACTTTAAA---AAAGTTGCCAAA
TTCT---TATCTGGACTAGTAATCAGTTGGCTGTTTGCATCTATGAGGTGTAGAATCAACAGCCCTTCTGG-TAATAGAT
GTTGTTTATGTATACTCCTTTATGGTGGTAATTAACATTTGGAGTTTGGTACGTA----GCAGTTCTTTGTCT-ACTTGT
CTTGGATCTTATTGTTAAGACGTTGCTGGTTTTGTGTCTGAAGTAATAGTAATCA----GTTTGTTGTTT----------
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>chr3B_390
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-TGCTGGGACAATCAGCGCCTCCTAGAGATCCACGAGGT-ATCGCTCGAGCGGACGCCGATATGGATGGATGGATAGATA
GATCTTGCTCCTTTCTAGACTGAGCAAAATTCTGATGAATATAAACGGTGC--TTTTTATGGTTC---TGAGTGGTGGCC
ATTCACTTGTTTGGAGATTCGATTAACATCAGTCCCATCGTCTAGTTACCTGGGGTTTACATACTTGATTTTGTGAC-AG
ATCTCCACCTACATGCCTGCTGTGGGTGCATCAGACACTGTTCCCGTGCTCTCTGTTACTTTAAA---AC-GTTGCCAAA
TTCT---TATCTGGACTAGTAATCAGTTGGTTGTTTGCATCTATGAGGTGTAGAATCAACATCCCTTCTAGTAAATAGAT
GTTGTTTATGTATACTCCTTTATGGTGGTAATTAACATTTGGAGTTTGGTACGTA----GCAGTTCTTTGTCT-ACTTGT
CTTGGATCTTACTGTTAAGACGTTGCTGGTTTCGTGTCTGGAGTAATAGTAATCA----GTTTGCTGTTTG---------
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>chr4A_954
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--------------------------TCTGGTGAATAGAT-GGTGTTTATACCCCTTTGTGGCGGCAATTAACATGAGGA
GATTGGGGTTTTTTGTAGCAGTCCTTCGCCTGGTTATCCTGGAATTCACCAGATTTTTAGTTACTGTGTGATTCATTAGT
GACTAGACTATTCATGTGC--TACCTGTTACCTGTTGGTTGATAGCTAAAGTATATTCATTCAAGCTCGTTTTGCCGAGG
TAGTATGCCATCA-------GTTGGTCGCAAGTGTAGG-------AAGTAGTTGTAACTTGTAAGAGCTGTTCAGATTTG
GGATGGATGTTTTGCGCTTCAAATGCCATCCTTTTTTATGACG-----TATGCTCTGCTTTTGCAGTAAGCTGCAGACCG
ACGCCCTCAAGGAGGCCATCACCCAGGTGGTGGCGGACGCCAAGGAGAAGAACAGGAAGTTCACCGAGACCGTTGAGCTC
CAGATCGGCCTCAAGAACTATGATCCGCAAAAGGACAAGCGTTTCAGCGGCTCTGTCAAGCTGCCCCATGTCCCTCGCCC
CAAGATGAGGGTCTGCATGCTCGGTGACGCCCAGCATGTGGGAGAGGTATGGCCCGCCGGCTGCTACTATTAGTCAGTTC
TTCTTTTCGTCTGTAACATTTACTGGCTGTGAGGATTTTGGCT----GTGCTGTGAGCAATCACTGGTCGTGGGAATTTT
GAGCTGTGCTGATATCTTTGTTACATCTAATGAATGTTACTTGCACGCTAGTATTGTGGGCTCTTTAAGATGATAGTAGT
GTGATACTGCGATTACACTTTACTCTTTACATGAGTTATTATTTGCATCATGCTGTCAGAATGTGACCGGTGCTAGAACC
TTCTTTTGTTATTGTATAGGTGTCTAGCTACAGGGGCATAGCTAGGATTATTATTCATCGGGTCCAGCTCTGCTAAACAG
TGGGATTAGTTCTTTGCTTAGTCTTAAGCTAGCTT-ATTCTATAAGTAATAAGCAAAATTTATTCGGTTCACTTGAACCC
AACACCAATGAGTGGCTCCGCCCATGCCTTGCTAATATGACAACTAACTTTGTTACATCTTCATGAATGCTATCTATATG
TAAGAACTGTATTCTTTGAAGTGATAGATGGATCAATGTTCTTTTAACCTTCCTCATA----------------------
-------GCTTATTCTCCTGATTGCAGGCTGAAAAGATTGGTCTTGATTCCATGGATGTTGAAGCTCTTAAGAAGATGAA
CAAGAACAAGAAGCTTGTCAAGAGGCTTGCCAAGAAGTACCATGCTTTCTTGGCCTCAGAGGCTATCATCAAGCAGATTC
CACGTCTCCTTGGTCCTGGTCTCAACAAGGCAGGCAAGTAATCTGATCTGTCTCTGTTAGTTTACTTGTCTCTCAGCTGG
TTGGTTTACTTCTCATGGTTAGAAGTTAGAATACCATTTCTTTGGT--TGTCTTCATGTGGATGTGTGCG-TTACATCTT
TTCTACCATTGATCTATTATTAGTTTTTGTGATGGTTTTATTTTTAGTGTGAAC---------C------TAGCTGAACC
TTGTAA-----TTTACTTGCATTTTGTCCTTGTATGGATTAA--------------ATGTAT-------GCCATATGGTC
TTGTACAGTTGCAGACAACCCATTTGATTCTCATCTGCATCCATGCTTTCGCAGAACAGTCTATTGTGA----ATTTTGA
CATTTGTAGAGCTT--ACTGCATTATATGGTG-TTCTAATATTCTATGCCCCCATCTGTTTGAGAGTTCATAGTTCATAC
TTG-TGTGCATAACATAGACAGCTTCACCATCCCTGTTCTGATCCTGCATACTGAGTGTTGTCTGCTGGTGGCATTGTAG
GCAAGTTCCCGACTCTGGTTTCTCACCAGGAGTCTCTGGAAGCCAAGGTGAACGAGACGAAAGCAACAATCAAGTTCCAG
CTCAAGAAGGTGCTGTGCATGGGCGTCGCGGTGGGCAACCTGTCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGAT
GAGCGTCAACTTCCTGGTTTCCCTGCTCAAGAAGAACTGGCAGAACGTGAGTCCCATTCAGATCTCACTCCCTCC-----
-----------------------------------------------------GAGTTTCTGTTTCACTTCCTCTCGTGT
CTAGTGCAAG----TGATTAGGCCCAAAAGACTAAATTA------GACATGGCATGACGTTGGTCATTGCATTTGTTTTT
GCAGGTGAGGTGCCTGTACATCAAGAGCACCATGGGGAAGCCGGTCCGTGTGTTCTAAAGCCTGTACCCCTACCGCCCAT
--CTATATCAATGCTACCTAGAATACTGGACTTCCTTACTATG-TTTACGCATAAATATGTCGGTGTTGTGTCGTAGTTT
TTATCGAATTTTGCGCGTGCCTGGTGAAGATGACAGAAC-----GACCACTACTGTTTCTCTTGAGTTGTGATTCTGCTG
GAGTGATGTG-CTCATCGAAATCATGCCAGAACATTATATATATA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>SNPs
-----------S-------S-------------------------S-----------S-----S-S------S-------
--S---------------S---------------------------S-------------------S----SSSSSSS--
-------------------------SSS-S-SS-SS--------------------------------------S-----
-S----------S---------------S-S-S--------------------------S-------S---SS-------
---------------------------S--------S-S----S------------------------------S-S---
----SS----------------------------------------------------------------------S---
--------------S------S-S---------------S---------------S----S------S---S---S---S
SSS-SS-S--S-S-------S--SSS---------------------------S-----------SSS--------S-SS
----S-----S--------S-S-SSS--S-------S-S-----------------------S--------------S--
-----SS--S--S-S-------S---S--S--------SS--------------S---------S----------S--S-
-SS-S-------S--S----------S--S------------S---S------------S-SS-----------------
----S--------------------------------------------------SSSS--S------------------
--------S------------------------------------S----------------------------------
-S----------------S-------------------------------S------------S----------------
--------------S-----------------S-S-----------S-----------------------------S---
-------------------SS---------------------------------------------------S-------
----S---------------------S-----------------------------------------SS----------
------------------------SS--------S---------------------------------------------
----S--------------------------------S------------------------------------------
--------------------------------------------------------------------S-----------
---------------------------------------------------S----------------------------
---S-----------------------------SS-----S---------------------SS----------------
---------------------------------------------------------------------S----------
-----S---S-------S-S-------------S-----S--------------S-SS--SSS-----S--S------S-
-------S-----S-----S------------------------------------------------------------
---------------------------------S-S----------S-----------------S--S------------
----S------S--S-------SS--SS-S---S-------------------------S--------------------
-----------------------------------S-------SS-S-----------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------------S------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
--------------------------------S------------------------------------S-----S---S
------------------S-------------------------------S--------SS-S----------S------
--S------------------S------SSSSS---S----SSS------------S---SSSSSSSSS---------S-
-----------------------S-S---S----S-----SSS-------------SSSS-SSS--S-SSSSS---S---
------S------S-------------------------------S------S-------------S-----S-------
--------------------S-----------------------S------------S--S---------------S---
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------SS----------
------------------------------S----------------------------------S--------------
----------SSSS-------------------------S----------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------------------S----------------------------------------S-------
--------------S----------SS--------------------SSSSSSSSSSSSSSSSSSSS---S---------
----------S---SSSSS-S-SSS------S-------S-------------S----------S---------------
---------------------------------S-----S------S---SSSSSSSSSSSSSSS-----------S-S-
--------------S--S---------------------------------------S--------------S-------
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_843
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CAGCTGCCTGTTTGCATCTG-------------------------------------
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-------------------------------
>reverse_2706
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------CGTATCCATATGGCC
GTGCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>forward_1445
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTAAGCTATCGACCG
ACGCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_2709
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATCCATATGGCC
GTGCACAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>forward_2110
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------AATGCCTCCGCCTTTGTGTA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>reverse_3938
--------------------------------------------------------------------------------
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-----------------TGCATTGCGGGATCAACAAC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
