>input_sequence_36605
--------------------------------------------------------------------------------
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----------------------------------------------------------------------CAATATAAGG
CATATAAACTTTGAGCTTAAGCCAGCTTGCGTTGCAAGTCAAGTGAGATCTTCCCTATTTATCTTTCTCTCTACCAAGCA
TTTATGTACAGCTACCCAAACAAACTATTCTAATCATCAACAGTTAGA--------------------------AGCTTT
CTCAATCTAACTACCGCCTTAATTGCTGTGCATATTGATAATATGCTCTATATTTTGCATGGAATGGAGATCTAACGCAT
TCCCCAAACAAACGAATGCAGGTACTTGATTATTGTTGATGATATCTGGAGCACATCGGCTTGGCAACATGTGAAATTTG
CCTTACCTATTGATAATAACAAGCGAAGTAGAATAATTGCTACAACACGTAGTAAGAATGTGGCAACGTCATGCTGTGCT
GACATAGACGGGCATATGTATGAAGCGAAGCTTCTAACTGTTGATGATTCCCGCAGTTTATTCTTTGGAAGAATCTTTCC
TTCAGGCGAATGTTGTCCCCAAGAATTGCGGGAAGTAGCAGATGAAATTTTGAAGAAATGTGTTGGTTTGCCATTGGCCA
TAATCAGTATAGGAAGTTTATTAGCCAGCAAAAGTCGAACAGTCAAAGTCTGGTCAAAAATACGGAAGTCTGTTTCTTCT
GCAGTCGAGAAAGATTGTCCACTTGACCAAATGAAGAGAATATTGCTGCTTAGTTATCTTGACCTTCCACACCATTTAAA
GGCTTGTTTTTTATATCTGAGTGTCTTTCCGGAGGGTTACTACATTGACAGTAGATTTTTGATATGGAATTGGATGGCTG
AAGGCTTAATCGGTGGAGAAAACAGAGAAGATATGGAGAGGCTTGGAGAAAGCTATTTGAATGAGCTTATCAATAGAAGC
ATGATTCAAGCAAGAAAGATTGGGGCAGATGGCACAAGAGTGAAAATCTGCGGAGTCCATGATATTGTGTTGGATTTTAT
TACATCTCAAGCTGCGGAAGACAAATTTGTCACTGTGTTGATAGATGGTAAATACCCTTCATGGAAGATTCGCTGGCTGT
CCCTCCACTTGAACTCTTCTGAAGCTGCAGATTTGCCAATAAAGGATGCATCGCATCTTCGGTCACTTAATATATTTGGA
CCTAGAGGTAAGCAACTGCCTCAAAATTGTGAAGCTTTGCGAGTGCTGAATATAGAAGGCGTTGTGAAGTCTAAGAACTG
TCACATTGAACACATTGGAAGTTTCTATCAACTGAAGTACCTGAGGATCATTGGTTACCAGATCACAAGTCCCGACACAA
CCATAACCGAGCTTCCGGAACAAATTGGGAATCTGCACCATCTAGATGTATTGGATCTTAGAGGTTATAGAATTCTGAAA
CTACCAGCAACTATTGTTCAATTAAAGAAACTAGTGTGCCTTTTTCTGGATGAAATCTTTACTCCGCTGCCTGATGGAAT
TGGGAATCTGCAATGCCTGGAGGAGCTATCAGGGATCAATCTCTGTAATGCATCTGTAAGGTCTGTTGAAGGGCTCGGCG
AGCTGACCAAACTAAGGGCGCTGAAGATTAAATGGATTTTAGGTTTTGATAGGGTTCTCGATGAGGAAGATCACATGAGA
GTGTGTGCCTCAACTCTGTCCAAACTCGTTGCAAACAGCCTCCACTCGCTGCACTTCACTGGGATCAAAAGCTCTGATTT
CTTAAATTCGTGGGTGTTTCCGAGTGGCTCCTCTCCTCCACCTCTCCGGAGGCTCTTCCTGGAGGGGGTTGGAAATTTTG
ATTTCCCCGCCATACCAAGCCAGATCAGATCCCTCATAAACCTCACCCGCCTTAGCATCAGATATGTTCGTGAAATGGGA
GAGGAAGGTGTCAATATCCTCGGCAGTCTACCCATGCTGCTCTCTCTTACAATTCTGCTGCTCTATACCCAACGCCAGAG
TTGTGTCATCAGCAGCCAAGGATTCCAGCGTTTAGTGAAGCTGAACTTCCATGGCGAGACCTGCTTGATGTTTGAGCCAG
GAGCCATGCCAAAGCTCCAGAGGTTGAAACTAGTTGTGTTCCGATGGCCAGAGCAGTACAACCCTGGATTGCTCCACCTC
TCAAGCCTCAAGCATGTCAGTATCTGGAACTGGAGGCGGGATCGTGGTGTGGAGGATTTGATGGATGAAATCAGAAGCGT
CCATCCCAACCATCCAATACTGGACAGGAGGGTCTGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr1D_1_TraesCS1D01G045300
GCGAAACCAAACGTGGTGGCCATCTTTGGGATTGGAGGCTCCGGCAAGACCACTCTGGCCTTGGAGGTGTACAACAAGAT
CCAAGAACAGTTTGATTGCCGGGCTTTCGTCTCCGTTTCTCGGACTCCTGACATCAAGAGGCTTTTAAAACATATCCTCT
TTCAAGTCAATGAAGAAGAGTACAACAACTCAGAAATGTGGGATCTGGAGCAGCTTATACTCAAGCTCAGGGAACACTTG
AAAGACAAGAGGTAG-----TTATTCCTGATTTCTTCTTTCTTTAAGTATTCTAATTCTGTCTCAAATGGTTTCATGAAT
GATAACAGGCAATCAATATTGATCGAGCCAG----AACATCCTTACAATTTTTTTTCCATCCCATAAATTCTGCCGTGGC
AACATCATTCTTGCCTG--TGATGCACCGTATTAATCTGGAACGTATTTTCCAAATCTTGTTTTGGTTCTGAGTTAATTT
TTAGTTCTGACTCTAATTTTGTTGGTACATTAATTTGATCAAAAAAAATTCGAGCTTATTTAAATGGAGAGAGTTTCTTA
GATATATTTTCATCATGTATC-----------TCACTGCCCTATTTCTGATATTTCCCCGAACATCACCTCATATGCCTC
TTCCCTTGACCCCTTCACCACTAATGTCGAAGCTCATTTAAACGTTGCTTTAACAATTAAATGATAATTCTGTTACTATC
ATGGACTAGCTTTTATTGCAAAAGACCTGCAGATTATGGTGTACAGCGGAACAAAGAATGGAAGTACTCTAAATTTATTC
AATATCTGAAGCATAGTCTAGCTTGTTCAATCTCTTCTGTACATGTGGCACTTTGGTC----GCATGTGGAGAGAAGCCT
ATATGTTATTCAGACCACTTCAGAACAAGCAATGTTCATGTGATTAAGGTACT----CTCACATGTACGTAGATTAGAAC
TTAGTATCAACACAGAGACATTATGGGTGTAGTTCCCATTATTGCTATGGTCGGCACTCTCTCTTTTACACAATATAAGG
CATATAAACTTTGAGCTTAAGCCAGCTTGCGTTGCAAGTCAAGTGAGATCTTCCCTATTTATCTTTCTCTCTACCAAGCA
TTTATGTACAGCTACCCAAACAAACTATTCTAATCATCAACAGTTAGA--------------------------AGCTTT
CTCAATCTAACTACCGCCTTAATTGCTGTGCATATTGATAATATGCTCTATATTTTGCATGGAATGGAGATCTAACGCAT
TCCCCAAACAAACGAATGCAGGTACTTGATTATTGTTGATGATATCTGGAGCACATCGGCTTGGCAACATGTGAAATTTG
CCTTACCTATTGATAATAACAAGCGAAGTAGAATAATTGCTACAACACGTAGTAAGAATGTGGCAACGTCATGCTGTGCT
GACATAGACGGGCATATGTATGAAGCGAAGCTTCTAACTGTTGATGATTCCCGCAGTTTATTCTTTGGAAGAATCTTTCC
TTCAGGCGAATGTTGTCCCCAAGAATTGCGGGAAGTAGCAGATGAAATTTTGAAGAAATGTGTTGGTTTGCCATTGGCCA
TAATCAGTATAGGAAGTTTATTAGCCAGCAAAAGTCGAACAGTCAAAGTCTGGTCAAAAATACGGAAGTCTGTTTCTTCT
GCAGTCGAGAAAGATTGTCCACTTGACCAAATGAAGAGAATATTGCTGCTTAGTTATCTTGACCTTCCACACCATTTAAA
GGCTTGTTTTTTATATCTGAGTGTCTTTCCGGAGGGTTACTACATTGACAGTAGATTTTTGATATGGAATTGGATGGCTG
AAGGCTTAATCGGTGGAGAAAACAGAGAAGATATGGAGAGGCTTGGAGAAAGCTATTTGAATGAGCTTATCAATAGAAGC
ATGATTCAAGCAAGAAAGATTGGGGCAGATGGCACAAGAGTGAAAATCTGCGGAGTCCATGATATTGTGTTGGATTTTAT
TACATCTCAAGCTGCGGAAGACAAATTTGTCACTGTGTTGATAGATGGTAAATACCCTTCATGGAAGATTCGCTGGCTGT
CCCTCCACTTGAACTCTTCTGAAGCTGCAGATTTGCCAATAAAGGATGCATCGCATCTTCGGTCACTTAATATATTTGGA
CCTAGAGGTAAGCAACTGCCTCAAAATTGTGAAGCTTTGCGAGTGCTGAATATAGAAGGCGTTGTGAAGTCTAAGAACTG
TCACATTGAACACATTGGAAGTTTCTATCAACTGAAGTACCTGAGGATCATTGGTTACCAGATCACAAGTCCCGACACAA
CCATAACCGAGCTTCCGGAACAAATTGGGAATCTGCACCATCTAGATGTATTGGATCTTAGAGGTTATAGAATTCTGAAA
CTACCAGCAACTATTGTTCAATTAAAGAAACTAGTGTGCCTTTTTCTGGATGAAATCTTTACTCCGCTGCCTGATGGAAT
TGGGAATCTGCAATGCCTGGAGGAGCTATCAGGGATCAATCTCTGTAATGCATCTGTAAGGTCTGTTGAAGGGCTCGGCG
AGCTGACCAAACTAAGGGCGCTGAAGATTAAATGGATTTTAGGTTTTGATAGGGTTCTCGATGAGGAAGATCACATGAGA
GTGTGTGCCTCAACTCTGTCCAAACTCGTTGCAAACAGCCTCCACTCGCTGCACTTCACTGGGATCAAAAGCTCTGATTT
CTTAAATTCGTGGGTGTTTCCGAGTGGCTCCTCTCCTCCACCTCTCCGGAGGCTCTTCCTGGAGGGGGTTGGAAATTTTG
ATTTCCCCGCCATACCAAGCCAGATCAGATCCCTCATAAACCTCACCCGCCTTAGCATCAGATATGTTCGTGAAATGGGA
GAGGAAGGTGTCAATATCCTCGGCAGTCTACCCATGCTGCTCTCTCTTACAATTCTGCTGCTCTATACCCAACGCCAGAG
TTGTGTCATCAGCAGCCAAGGATTCCAGCGTTTAGTGAAGCTGAACTTCCATGGCGAGACCTGCTTGATGTTTGAGCCAG
GAGCCATGCCAAAGCTCCAGAGGTTGAAACTAGTTGTGTTCCGATGGCCAGAGCAGTACAACCCTGGATTGCTCCACCTC
TCAAGCCTCAAGCATGTCAGTATCTGGAACTGGAGGCGGGATCGTGGTGTGGAGGATTTGATGGATGAAATCAGAAGCGT
CCATCCCAACCATCCAATACTGGACAGGAGGGTCTGAAGAGGCAAATTCGCAAGGTGCAGCAGCTAACCTGTGGAGGATG
ACATGTAGTACAGAACTTGCTGGTGGTTGAG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTTAAGTCATTCAGCAGTATTTGCA
GGCGGCACATGCAGCATCCTGTAGCACGGGTGCCAACAGTGCCCACACTCTTATTGTAACCCCACCCAGATTTACTTCC-
-----TAACAGGACCAAAGCATGCAGTGGCTCTTTTTTTTTATCTAAATGCACTATTGCATTACTTAGTGGACGGAGCTA
AATCGTCCGCCACAAGATGTTGTACATTCGGGATTACATTGTCTGAACATAGCTCATCCCCAACATTCAGAGTACATCCA
TATGCTGCTAGAGAATGTGCTACTTGGTTACAGCTCCGATTACAAAAACTGAAGACACAGTCATAGATATTTTGTGCTAT
GTACTCCTTCAAATCAGCTAGTGCGAAACAGACAGGCCACAGATCATCCTCTCCGCCTTCCATGGCTTGCTTCAGCAGCA
GCGAATCGGT--------TTACCTTATTAATCCCCTTCGCTCCTGCTAGTTTCGCTCCATAGAGGGCAGCCAAAATTTCT
GCATGAAAAGGGTTCAGTACACTCTCCAGCTTACCTGCTCCACATGCAACTACCTCCCCTTCTTCATTTCTTATGACTGC
ACCCCAGCCTCCTGACTTGGTGTCTCCACAAAATGCTCCATCAGTGTTAATCTTCAGGATACCTTGAGGAGGTTTTTTCC
AGCTACATATTTTCCCACTTGGAGGTGCCTTTTCCTTCAAGAAAACTTGAATGTATTCATTAGTTTGTTTCAAAATGATA
TAATAAAGTTCATCAATACCTCTTGTTTTACCTTCTTCCCTGATATTATTTCTTTCTTGCCACCATTGCCATAACAACAC
TACTGTCTTCACTTTGGTCTCTTCCTCCAGACAGATTATCTCATTAACAACCTCTTCTGCAGATTGCTTACTCTTCAGTT
TTTCCCTTATTTCTTCCAGCCCCAATACTTGCCA
>chrUn_1
GCGAAACCAAACGTGGTGGCCATCTTTGGGATTGGAGGCTCCGGCAAGACCACTCTGGCCTTGGAGGTGTACAACAAGAT
CCAACAACAGTTTGATTGCCGGGCTTTCATCTCTGTTTCTCGAACTCCCGACATCAAGAGGCTTTTGAAACATATCCTCT
TTCAAGTCAATGAAGAAGAGTACAACAACTCAGAAATGTGGGATCTGGAGCAGCTGATACTCAAGCTCAGGGAACACTTG
AAAGACAAGAGGTAATTGTTTTGTTCCTGATTTCTTCTTTCTTCAACTGTTCTAATTCACTCTCAAATGCTTTCACGAAT
GATAACAGGCAATCAATATTGATCGAGCCCGAAGTAACATACTTACATTTTATT--CCATCCCATAAATTCTGGCACGGC
AACATCATTCTTGCCTGTCTGATGCACCGTATTAATCTGGAATGTATTTTCCAAATCTTGTTTTCGTTCTGACTTAATTT
TTAGTTCTAACTCTAATTTTGTTTGTAG----ATTTGATCAAAATGT-TTCGAGCTTATTTGAATGGACAGAGTTTCTTA
GATATATTTTCAACAAATCATGTACTCCTATGTCACTGCCATATTTCTGATATTTCCCCGCACATCACCTC--ATGCCTC
TTCCCTTGACCCCTTCACCACTAATTTCGAAGCTCATTTAAACGTTGCTTTAACTTTTAAATGATAATTCTGTTACTATC
ATGGACTAGCTTTTATTGCAAAAGACCTGCAGATTATGGTGTACAGTGGAACAAAGAATGGAAGTACTCTAAATTTATTC
AATAGCCGAAGCATAGTCTAGCTTGTTCAATGTCTTCTGTACATGTGGCACTTTGGTTGCATGCATGGGGAGACAAGCCT
ATATGTTG----------TTCAGAAAAAGGAATGTTCATGTGAGTAATTAAGATACCCTCACATGTAAGCAGATTAAAAT
TTAGTATCAACACAGAGCAGTTATGAGTGTAGTTCCCATTATTGCTATGATCGCTACTCCCTCTTTTTCACAATATAAGG
TGTATAAACTTTTAGGTGAAGCCAGCTTGCATTGCAAGTCAAGTGAGATCCTCCCTATTTATCTTTCTATCAACTAAGCA
TTTATGTACACCTACCCAAACAAACTATTCTAACAACAATGGGGAGCATATTAATTTTGGGCCTTTCCTTGTGCAGCTTT
CTCAATCTAACTACCGCCATAATTGGTTTGCGTAGTGAAAATATGCTCTGTATTTTGCATGGAATGGAGATCTAATGCAC
TCTCCAAACAAATGAATGCAGGTACTTGATTGTTATTGATGATATCTGGAGCACAACGGCTTGGCAACATGTCAAATTTG
CCTTACCTATTGATAATATCAAACGAAGTAGAATAATTGCTACAACACGTAATAAGAATGTGGCAACGTCATGCTGTGCT
GACATGGACGGGCATATGTATGAAGCGAAGCTTCTAACTGTTGATGATTCCCGCAGTTTATTCTTTGGAAGAATCTTTTC
TTCAGGCGAATGTTGTCCCCAAGAATTGCGGGAAGTTGCAGATGAAATATTGAAGAAATGTGGTGGATTGCCATTGGCCA
TAATCAGTATAGGTAGTTTATTAGCCACCAAAAGTCGAACAGTCGAAGTCTGGTCGAAAATACGGAAGTCTGTTTCTTCT
GCAGTCCAGAAAGATTGTCCACTTGACCAAATGAAGAGAATATTGCTCCTTAGTTATCTTGACCTTCCACACCATTTAAA
GGCTTGTTTTTTATATCTGAGTGTCTTCCCGGAGGGTTACTACATTGACAGCAGATTTTTGATATGGAATTGGATGGCTG
AAGGCTTAATTGGTGGAGAAAACAGAGAAGATATGGAGAGGCTTGGAGAAAGCTATTTGAATGAGCTTATCAATAGAAGC
ATGATTCAAGCAAGAAAGATTGGGGCAGATGGCACAAGAGTGAAAATCTGCGGAGTCCATGATATTGTGTTGGATTTTAT
TGTATCTCAAGCTGCGGAAGACAAATTTGTGACTGTGTTGATAGATGGTAAATACCCTTCATGGAAGATTCGCTGGCTAT
CCCTCCACTTGAACTCTTCTCAAGCTGCAGATTTGCCAATAAAGGATGCATCGCATCTTCGGTCACTCAATATATTTGGA
CCTAGAGGTAAGCAACTGCCTCAAAATTGTGAAGCTTTGCGAGTGCTGAATATAGAAGGCGTTGTGAAGTCTAAGAATTG
TCACGTTGAACACATTGGAAGTTTCTATCAACTGAAGTACCTGAGGATCATTGGTTACCAGATCACAAGTCCCGACACAA
CCATAACCGAGCTTCCGGAACAAATTGGCAATCTGCAACATCTAGAGGTATTAGATCTTAGAGGTTATAGAATTCTGAAA
CTACCAGCAACTATTGTTCAATTAAAGAAACTAGTGTGCCTTTTTCTGGATGAGATCTTTACCCCGCTGCCTGATGGAAT
TGGGAATCTGCAATGCCTGGAGGAGCTATCAGGGATCAATCTCTGTAATGCATCTGTAAGGTCTGTTCAAGGGCTCGGGG
AGCTGACCAAACTAAGGGCACTGAAGATTAAATGGATTTTATGTTTTGATAGGGTTCTCGATGAGGAAGATCACATGAGA
GTGTGTGCGTCAACTCTGTCCAAGCTCGTTGCGAACAGCCTCCGTTCGCTGCACTTCACTGGGATCAAAAGCTCTGATTT
CTTAAACTCATGGGTGTTTCCGAGTGGCTCCCCTCCTCCACCTCTCCGGAGGCTCTTCCTGGAGGGGGTTGGAAATTTTG
ATTTCCCCGCCGTACCAAGCCAGATCAGATCCCTCATCAACCTCACCCGCCTTAGCATCAGATATGTTCGTGAAATGGGA
GAAGAAGGTGTCAATATCCTCGCCAGTCTACCCATGCTGCTCTCTCTTACAATATTGTTGCTCTACACCCAACGCCAGAG
TTGTGTCATCAGCAGCCAAGGATTCCAGCGTTTAGTGAAGCTGAACTTTCACGGCGAGACCTGCCTGATGTTTGAGCCAG
GAGCCATGCCAAAGCTCCAGAGGTTGAAACTAGTTGTGTTCCGATGGCCAGAGCAGTACAACCCTGGATTGCTCCACCTT
TCAAGCCTCAAGCATGTCAGTATCTGGAACTGGAGGCGGGATCGTGGTGTGGAGGATTTGATGGATGAAATCAGAAGCGT
CCATCCAAACCATCCAATACTGGACAGGAGGGTCTGAAGAGGCAA--------GGTGCAGCAGCTAACCTGTGGAGGATC
ACATGTAGTACAGAACTTGCTGGTGGTTGAGGCTGGTCATAGTGGGAGTAACTTAGCTAGTAACATAACGCTCTTCGAGA
AAATTTTGCTTATGTGGCAAGTAATTAATGAGGTGGTAACATAATATGTTACTGTAACATAGCGCTTTCCAAGACAAGAT
GAGTCTATGAGCTAGTAAATGAAGCCATCTATGATACTACTATTATGTTACTTTGCATTATGAAGGTAGTAACTTAGACT
AGCGTCATATGCATGACACTAGTCTAAGTTACTCCCCACTATGACCAGCCTGAGAGTTAAGTCATTCAGCAGTGTTTGCA
GGCGGCACATGCAGCATCCTGTAGCACGGGTGCC---------CACACTCTTGTTGTAACCTGACCCAGATTTACTTCCT
AACAGTAACAGGACCAAAGCATGCAGTGGCTCT-----------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>chr5A_3386
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------------------------------TCTTTTTTTTTATCTAAATGCACTATTTCATTACTTAGTGGACGGAGCTA
AATCGCCCGCCACAAGATGTTGTACATTCGGGATTACATTATCTGAACATAGCTCATCCCCAACATTCAGAGTACATCCA
TATGCTGCTAGAGAATGTGCTACTTGGTTACAGCTCCGATTACAAAAACTGAAGACACAGTCATAGATATTTTGTGCTAT
GTACTCCGTCAAATCAGCTAGTGCGAAACAGATAGGCGACAGATCATCCTCTCCGCCTTCCATGGCTTGCTTCAGCAGCA
GCGAATCGGTTTCAAAAATTACCTTATTAATCCCCTTCGCTCCTGCTAGTTTCGCTCCATAGAGGGCGGCCAAAATTTCT
GCATGAAAAGGGTTCAGTACACTCTCCAGCTTACCTGCTCCACATGCAACTACCTCCCCTTCTTCATTTCTTATGACTGC
ACCCCAGCCTCCTGACGTGGTGTCTCCACAAAATGCTCCATCAGTGTTAATCTTCAGGATACCTTGAGGAGGTTTTTTCT
AGCTACATATTTTCCCACTTGGAGGTGCCTTTTCCTTCAAAAAAACTTGAATGTATTGATTAGTTTGTTTCAAAATGATA
TAATAAAGTTCATCAATACTTCTTGTTTTACCTTCTTCCCTGATATTATTTCTATCTTGCCACCATTGCAATAACAACAC
TACTGTCTTCACTTTGGTCTCTTCCTCCAGATAGATTATCTCATTAACAACCTCTTCTGTAGATTGCTTACTCTTCAGTT
TTTCCCTTATTTCTTCCAGCCCCAATACTTG---
>SNPs
--------------------------------------------------------------------------------
----S-----------------------S----S--------S-----S-----------------S-------------
-------------------------------------------------------S------------------------
--------------S-------S--------------------S--S-S---------SS---------S-----S----
-----------------------------S----------S------S---S--SS-----------------S-SS---
------------------------------------------S---------------------S-------S-------
--------S--------------S---SSSSS------------SSSS-------------S------S-----------
------------S--SS-SSS-------------------S-------------------S----------SS-------
-------------------------S----------------------------SS------------------------
----------------------------------------------S---------------------------------
----S-S------------------------S-------------------------S---------S-----S------
-------SSSSSSSSSSS-------S---S-------------S---SSS-SS--------------S-S------S--S
-----------------SSS-----S-----------------------S---SS----S-------S------------
SS----------S--S-S------------S-------------------S-----------------S--S--S-----
----------S----------------------SS-SS-SSS-SSSS---------------------------------
------------------S------S-S---S--S---S----------S-------------------------S---S
--S---------S------------------S--S--------------------S----------------S-------
------------------S---S----------------------------S----------------------------
-----S------------------------------------------------------------------------S-
------------------------------------S-----------S-------------S---S-------------
-------------S-------------S----------------S----------S------------------------
------S----------------------------------------S--------------------------------
---------------------------S-----------------------S----------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-SS---------------------------S-----------------------------------------------S-
--------------------S----------------------------------------------S------------
-----------------------------------------------------------------------------S--
----S---------------------------------------------------------------------------
----------------------------S--------S--------S-----S---------------------------
-----------------------------------------------------S--------S-----------------
-------------------------------------------------------------------S----------S-
-------------------S---------------------S--------------------------------------
--------S--------------S--------S----------SS-----------------------------------
------S--S---------------------S------------------------------------------------
-----------S-------------------------S------------------------------------------
--S-------------------S------------------------------SS--S-------S--------------
------------------------------------------------S--S------------S---------------
-------------------------------------------------------------------------------S
--------------------------------------------------------------------------------
------S--------------------------------------SSSSSSSS--------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
----------------------------------SSSSSSSSS---------S--------SS-----------------
---------------------------------------------------------S----------------------
-----S----------------------------------S---------------------------------------
--------------------------------------------------------------------------------
-------S------------------------S----S------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
----------------S--------------------------------------------------------------S
----------------------------------------S----------------S----------------------
-------------------S---------------------------------S---------------S----------
-------------------------------S---------------------------S--------------------
-------------------------------SSS
>forward_109
--------------------------------------------------------------------------------
---------GTTTGATTGCCGGGCTTTCG---------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------
>reverse_1276
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CGCAT
TCCCCAAACAAACGA-----------------------------------------------------------------
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----------------------------------
>forward_1020
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----------------------------------------ATTGCTATGGTCGGCACTCT--------------------
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----------------------------------
>reverse_2946
--------------------------------------------------------------------------------
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-----------------------------------------------------------------TACCCAACGCCAGAG
TTGTG---------------------------------------------------------------------------
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----------------------------------
>forward_2580
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AGCTGACCAAACTAAGGGCG------------------------------------------------------------
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----------------------------------
>reverse_3958
--------------------------------------------------------------------------------
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-------------------------------------CACAGATCATCCTCTCCGCC-----------------------
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----------------------------------
