>input_sequence_36557
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--ATGTCATCGGCGCCGACGCCGGTGTTCGAGAGGCTGGCCGGGATCCGACCCCTCGCCGAGTCCGGCCGCTTCAAGGCA
AGCTCCCCGACCACGCGCCCCCACCCTCCTCACACGGAATCGCCTCTCGTTTTGCTCAT---------------------
--------------CCCCTGAATTGGTATTGCGCTGCTAATTCAGATAACGAAATTACGCATAGGGTTCATGCTGTCTGC
GGAACTTCAGCTAGAAATTGGGGAATAGCTGGTTCCTCTGCCAATGACATCTGGTCGTTTCTATCGCTAGGAGTGCCAAT
ACCATTTGCCTCTGCTGCTATGATTTGTTCACAGCCGAGTTTGTCTGGCAGGCATGGTTCCTGGACCAGTTCGGCGTTCT
TCATGACGGGAAGAAACCCTACCCCGGCGCCATTTTGGCATGTATGTTGGTCCACACATCGTAATTTATCTTCAGTTTAC
TGCTGCATCTTTGTGCTGCAATGTGATATGATAGC-----CAAGTGAGGCATGGATGTTTCAGTGGAGAAGCTCGCTGGG
AATGGCGCCAAGATGGTGATAATCAGCAATTCCTCGAGGCGGTCGTCTGTAACCATGGAGAAGCTGCAGAGCCTTGGGTT
TGACACGTCTTGTTTCCTCGGGGCGATCACGAGCGGGGAACTCGCCCATCAGTACCTTGACAAGTAAGCCTTTTATGCTG
ATATTTCTTCTGTGGTTTTTTTTTTGAATGTTCACCGGTAAGGGTTTTATGGGGTTACACACGATCTAGACACTATCTAG
ACTGAAAGGGCCAGAAACTTAAGATAAACTTCTGTGGTTATTTGGTGTAGCTCAGAAACTTAAGAT-AAACTTCTGATTT
GGTTTCGTAAACGCAGGAGGGATGACCCATGGTTTGCAGCTCTGGGAAGGAAATGTATCCATCTGACATGGGGCAATCGA
GGTGCAATTTCTCTGGAGGTTTGTTCTTCTGTTGTTTTTCTCTGGCAGTTGTTTCTTCTAAGGAATATTAGCATTGAATT
TGGCGTGGCATACTCATATATTCCTGCCAAATGGCTGAGGTCATCTAACATGTATGAAGAAGTATTAATAATGACAAGAA
TGTGATATCAAAAAGCATTCTTACTTATGAGGCACTTTTACAAGATTCCATGTCAAATGATTTCTTGTTTTCTCCTATTA
GGGACTTGGTTTGCAAGTTGTGAACAATGTTGACGATGCAGAGTTTATACTAGCCCATGGTACTGAAGCCCTTGGTTTAC
CTTCTGGTGATCCACTTTCGAGAAGTCTTGAGGAGCTTGAGCAGATTCTAGTGCTTGGTATACAAAAGCGACTTCCAATG
GTGGTAGCTAATCCAGATTATGTCACTGTTGAAGCTCGAAACCTGCGTGTCATGCCTGGTGGGTTAATGATTTTCATATC
TGATGCCATGTTGATTGTTTAACCATTACCAGGTAGCAGAGTTGTTTTAACTCATGAATGTATCTGCTTGCCTATCCTAC
ACTATAAATTTGGACATTCTTTATTTCTGATTCATGAGATATTTTTTCTTCTTTTCTTCTTCAAAAA-GAGATATGTTAG
AAGTATGGCCATCTTTTACAGTGCCAACTGATGGTGGTAATATAATGTTTCTCTTTTAGGCACTCTGGCAGCAAAATACG
AGAGTCTTGGTGGTGAAGTAAAATGGATGGGGAAGCCTGATAAGGTAATGCATGACATGTCTACTC-TTTGTAGAC----
-----TAAACGACTGATTCAACAACTTAAACATAATACATAATTGAAATGGCATTCACGCTATGATGGCCCACAAGATTG
TGAACTTGTGATTGCAACTGCACTTTAT-----------------------------------------------TACTC
CTACTTGATTTGACAGACTTCTCTAGGATCACCCTTTCTGTATTTAAGTTTTTGCGTGGGAAACTGTCCCTCGGCTCTCG
CCAGGTACTGACTTTGTTGCTGCTTTCTCAGGTTATCTATACATCAGCAATGTCCCTAGCAGGTGTTGAAGCACACGAAT
GTATCACCGTAGGTGATTCGCTGCACCACGACATCAAAGGCGCAAATGGAGCCGGAATGGCATCTGCATTCATCACTGGA
GGGATCCATGCGGATGAACTTGGACTCGGTGAATTTGGAGAAACTGCTGGAGATGATGCCGTCAGTGCGTTGTGTTGCAA
GCATAGCTCATACCCATCTTACATTTTGCCTTCATTTTCATGGTAG----------------------------------
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>chr7A_1_TraesCS7A01G265900
GTTAGGTTAATTGTATCTTCATCACTGCTACGCGCATTTCTGCTGCAAAACTATTCTCTGGATTATCTCTCATGATGATT
TTGTAATGTACACTTTGTAATCATTGTATGTGGTTCTCGAAAAACAGGCTCTTGGAGAACACGGCGTCATATGTTTGGAA
GACGTCGTGCACGAAATCTCCACGGTCGGGCCGCACTTCAGAGAAACGGCGAGCTTTCTCATGCCCTTCAAGCTCAAGTG
TCCGGAGAGGAGGCTGCAGATGAAGAAGAAACCCTTCAAGGATGGCGGCGACTCGGGCAACCGCGGGGACAAGATCAACG
AGCTACTAGAGAAGCTGAACTGAGGCAGTCTACAACTTGTGCCCTCAAACAAGCAATGGACCCGTTATTACCTTGTCGGT
TTTGTAATAGCATAGCTGAATGTACCTTTGTTTTGGAAACCCTGCCCGAGTGTTTGGGATCAAATCACGAAATAGCAGAA
ACTGTTCTTCA------CCCCGTGTCGTGTGCGTGCTCTGATCTTCGTGATCGATCTGACGTGCTTTGCTGAAACTAGCT
GTTTACATTGTTTACTTGCACGGACAGACTAGCCTGAGTAGTTCATACTACGTGAAGTTGGATTATATTGCAACAAAACC
TG-------------------------AGCGATTTTGCCAGATTTGAGAATACTATTCTGTCTGACGGGAATTATTCATT
GCGCAGTACTGACTGCATCGGTGTCATAGAAAGA--AGAATGTTGCAAACAGCGAGCCTGCATCCGTGTCCACTGTTACG
ATGGCCGTGGCGGCCGGCGAGACGCCGCAGTCACGCGGCGTATATGCC---------GCTCGTTGGCTGCTACTCGGCCC
AGCCACTGCCTGGTTGCTTGGCGTCCTCGTTGCCTTACCCTTCCGAACAAGCTCCTCCATCGCCTCTGCCTGCTCGTGTC
CACTCTCCCACAGCCCATCACCCTCCAGGCCTCCACCTACCGCAGCATTAAGTGCTCTCGTCGCGCGGCGGCGGCGACGA
GGATGTCATCGGCGCCGACGCCGGTGTTCGAGAGGCTGGCCGGGATCCGACCCCTCGCCGAGTCCGGCCGCTTCAAGGCA
AGCTCCCCGACCACGCGCCCCCACCCTCCTCACACGGAATCGCCTCTCGTTTTGCTCAT---------------------
--------------CCCCTGAATTGGTATTGCGCTGCTAATTCAGATAACGAAATTACGCATAGGGTTCATGCTGTCTGC
GGAACTTCAGCTAGAAATTGGGGAATAGCTGGTTCCTCTGCCAATGACATCTGGTCGTTTCTATCGCTAGGAGTGCCAAT
ACCATTTGCCTCTGCTGCTATGATTTGTTCACAGCCGAGTTTGTCTGGCAGGCATGGTTCCTGGACCAGTTCGGCGTTCT
TCATGACGGGAAGAAACCCTACCCCGGCGCCATTTTGGCATGTATGTTGGTCCACACATCGTAATTTATCTTCAGTTTAC
TGCTGCATCTTTGTGCTGCAATGTGATATGATAGC-----CAAGTGAGGCATGGATGTTTCAGTGGAGAAGCTCGCTGGG
AATGGCGCCAAGATGGTGATAATCAGCAATTCCTCGAGGCGGTCGTCTGTAACCATGGAGAAGCTGCAGAGCCTTGGGTT
TGACACGTCTTGTTTCCTCGGGGCGATCACGAGCGGGGAACTCGCCCATCAGTACCTTGACAAGTAAGCCTTTTATGCTG
ATATTTCTTCTGTGGTTTTTTTTTTGAATGTTCACCGGTAAGGGTTTTATGGGGTTACACACGATCTAGACACTATCTAG
ACTGAAAGGGCCAGAAACTTAAGATAAACTTCTGTGGTTATTTGGTGTAGCTCAGAAACTTAAGAT-AAACTTCTGATTT
GGTTTCGTAAACGCAGGAGGGATGACCCATGGTTTGCAGCTCTGGGAAGGAAATGTATCCATCTGACATGGGGCAATCGA
GGTGCAATTTCTCTGGAGGTTTGTTCTTCTGTTGTTTTTCTCTGGCAGTTGTTTCTTCTAAGGAATATTAGCATTGAATT
TGGCGTGGCATACTCATATATTCCTGCCAAATGGCTGAGGTCATCTAACATGTATGAAGAAGTATTAATAATGACAAGAA
TGTGATATCAAAAAGCATTCTTACTTATGAGGCACTTTTACAAGATTCCATGTCAAATGATTTCTTGTTTTCTCCTATTA
GGGACTTGGTTTGCAAGTTGTGAACAATGTTGACGATGCAGAGTTTATACTAGCCCATGGTACTGAAGCCCTTGGTTTAC
CTTCTGGTGATCCACTTTCGAGAAGTCTTGAGGAGCTTGAGCAGATTCTAGTGCTTGGTATACAAAAGCGACTTCCAATG
GTGGTAGCTAATCCAGATTATGTCACTGTTGAAGCTCGAAACCTGCGTGTCATGCCTGGTGGGTTAATGATTTTCATATC
TGATGCCATGTTGATTGTTTAACCATTACCAGGTAGCAGAGTTGTTTTAACTCATGAATGTATCTGCTTGCCTATCCTAC
ACTATAAATTTGGACATTCTTTATTTCTGATTCATGAGATATTTTTTCTTCTTTTCTTCTTCAAAAA-GAGATATGTTAG
AAGTATGGCCATCTTTTACAGTGCCAACTGATGGTGGTAATATAATGTTTCTCTTTTAGGCACTCTGGCAGCAAAATACG
AGAGTCTTGGTGGTGAAGTAAAATGGATGGGGAAGCCTGATAAGGTAATGCATGACATGTCTACTC-TTTGTAGAC----
-----TAAACGACTGATTCAACAACTTAAACATAATACATAATTGAAATGGCATTCACGCTATGATGGCCCACAAGATTG
TGAACTTGTGATTGCAACTGCACTTTAT-----------------------------------------------TACTC
CTACTTGATTTGACAGACTTCTCTAGGATCACCCTTTCTGTATTTAAGTTTTTGCGTGGGAAACTGTCCCTCGGCTCTCG
CCAGGTACTGACTTTGTTGCTGCTTTCTCAGGTTATCTATACATCAGCAATGTCCCTAGCAGGTGTTGAAGCACACGAAT
GTATCACCGTAGGTGATTCGCTGCACCACGACATCAAAGGCGCAAATGGAGCCGGAATGGCATCTGCATTCATCACTGGA
GGGATCCATGCGGATGAACTTGGACTCGGTGAATTTGGAGAAACTGCTGGAGATGATGCCGTCAGTGCGTTGTGTTGCAA
GCATAGCTCATACCCATCTTACATTTTGCCTTCATTTTCATGGTAGAAAACACGGTTTAGATTCAGGCACACCGTTTAAA
CGGGATTGCGGCCTTGGATAACGATGCTCTTTTCAGTTGTCAAAGTGAGCATCAAGATCGTGGAGGTGGTTTCAGTGCCG
CACTAAATTATTAGCGTTATGCATTTTCCGGAAATAAAATATCTGTTGATTTGATTGATAGGAACTGCATGCAATCGTGT
GTGGAGGAAACATCCTCTGTGAAATATTTATATGCATTGTTAAAT--TATGCTCCAGAACCCAGGCGGTGTACAACATAC
TATGCTGGGAAGCTGGCTTGATGCTTTGATCTGGAGGTTAAAGTCT--TCTGATTCTGGCAGAGGCAATGCCACTTGTTG
GTTGGCTACGTCGTAATGATCCAATCGTTTGA----------------GTCTTCAGGTGGGCGCTAGGATCGTGGGCATC
CTTGCACAAACCGGAGTTGCAACTTGCTAGGACTCTG-----------TAGTCTCGAGGAGCAAACGACTGGAGACGGTG
GGGATGGCATTCTTTAGCACTGAAACATGACAAAGACAAACGGCGATGGCATCATTCACATGTTTTGCAGATAAATAGTT
CAGT---TGCTCTTCAAGAAAATG-ATCTTCAAATTATGGAGTAATGGAT-TTTTTTTAGGGAACCATGCTCAACTTTAT
TCAACC----TGTTCAAAGGAACCTACAAATAAATGTTTTTTTTACCATTAGCAACTCGAAGAAAATAGTCAGTGATTAT
CCCCTTGTAATAACCGTCTCTCATTAGCACTCAGGGACGGAGCTCCTTCTGGCTTTTCAGCTAATAGTATTAACAAAAAC
TGCGTATGACCCCAGCTCAAAAATTCCATTGACCCCAGCCCAGCAGCAGACCAGCTAATCCCTAAAGCCTTAGCCCATGA
AATCCATTAAGTTCTAAAAGAAATCAACAGCCTGCAAACAACGATACAAGGCCAGGCCCAATGCGTACGCACTATGTATC
AATTAATCGATGTACGCTACCCGGCTGCTGTACGTGTACGCGAACA
>chr7B_1
GTTAGGATAATTGTATCTTCATCACTGCTACGTGCATTTCTGCTGCAAAAGTATTCTCTGAATTATCTTTCGTGATGATT
TTGTAATGTACTCTTTATAATCATCGTACGTGCTTTGTGAAAAACAGGCACTTGGAGAACACGGCGTCATATGTTTGGAA
GACGTGGTGCATGAAATCTCCACTGTCGGGCCGCACTTCAGAGAAACGGCGAGCTTTCTCATGCCCTTCAAGCTCAAGTG
TCCAGAGAGGAGGCTGCAGATGAAGAAGAAACCCTTCAAGGATGGTGGCGACTCGGGCAACCGTGGGGACAAGATCAACG
AGCTACTCGAGAAGCTGAACTGAGGCAGTCCTCAG-------------ACAAGCGATGGATCCGTTATTACCTTGTCGGT
TTTGTAATAGCATAGCTGAATGTACCTTTGTTTCGGAAACCCTGCCCGAGTGTTTGGGATCAGATCACGAAATAGCAGAA
ACTGTTCTTCTCCCCTGCCCTTGGTTGTGTGCACGCTCTGCGCTTCGTGATCGATCAGCCGTGCTTTGCTGAAACTAGCT
GTTCACAGTGTTTACTTGTACCAACAGGCTTGCCTGGGTAGTTGATT---CGTGAGGTTGGATGATATTGCAACAAAACA
TCAGGTTCTCTGGGCGCTCTATACTTTAGCTATTTTGCCAGATTTGAGAACACTG-TCTGTTTTACAGCAATTCTTCATG
CCGCATCACTGACTGCATCGGTATCATAGAAAGTATAGAATGTGGCAAACTGCAGGCCTGCATCCGTGTCCACGGTTACG
ATGGCCGTGGCGGCCGGCGAGATA----------GCGGCGTATATGCTCGCTCGTCGGCTGGTAGCCTGGTACTCGACCC
AGCCACAGCCTGGTTGCTTGGCGTCCTCGTTGCCTTACCCTTCCAAACGAGCTCCA-----------------TCGTCTC
CACTTTCCACAGCCCA-------------CCTCCACCTACCGCAGCAGCAAGGGCCCTTGTCGCGCGGCGGCGGCGGGGA
GGATGTCATCGCCGCCGGCACCGGTATTCGAGAGGCTGGCCGGGATCCGGCCCCTCGCCGAGTCCGGCCGCTTCAAGGCA
AGCTCCCCGT------GCCCCCACCCTACTCACGCAGAATCGCCTCTCGTTTTGCTCGTCTTCCAAGTAGCAGAAACGCT
AGGAGTA---------CATGAATTGGTCTTGCGCTGCTAATTCGGATAAAGAAACCGCGCATAGGGTTCATGCTGTCTGC
GGAACTTCAGCTAGAAATTGGGGAAAAGCTGGTTCCTCTGCCCATAGCATCTGGTCGTTTGTATCGCTAGGGGTGCCCAT
ACCATTTGCTTCTGCTGCTATGAGTTGTTCACAGTCGAGTTTGTCTGGCAGGCATGGTTCCTGGACCAGTTCGGTGTTCT
TCATGACGGGAAGAAACCCTACCCGGGCGCCATTTTGGCATGTATGTTGGTCCACACATCCTAATTTATCTCCAGTTTAC
TGTTGCATCTTTGTGCTGCAATGTG-----ATAGC-----CAAGTGAGGCATGGATGTTTCAGTGGAGAAGCTCGCTGGG
AATGGCGCCAAGATGGTGATAATCAGCAATTCCTCAAGGCGGTCGTCTGTAACCATGGAGAAGCTGCAGAGCCTTGGGTT
TGACACGTCTTGTTTCCTCGGGGCGATCACCAGCGGGGAACTCACCCATCAGTACCTTGACAAGTAAGCCTTTTATGCTG
ATCTTTCTTCTGTGGTTATTTGGTCTAGCTTA------------------------------------------------
--------------------------------------------------CTCAGAAACTTAAGTTAAAACTTCTGATTT
GCTTTCGTAAACGTAGGAGGGATGACCCATGGTTTGCATCTCTGGGAAGGAAGTGTGTCCATCTGACATGGGGCAATCGA
GGTGCAATTTCTCTGGAGGTTTGTTCTTCTGTTGTTTTTCTCTGGCAGTTGTTTCTTCCAAGGAATATTAGCATCAAATT
TGGTGTGGCATACTCATATATTCCTGCCAAATGGCTGAGGTCATCTAACATATATGAAGAAGTCCTAATAATGACAAGAG
TGTGATATCAAAAAGCATTGTTACTTATGAGGCACTTCTACAAGATTCTGTGTCAAATGATTTCTTGTTTTCTCCTATTA
GGGACTTGGTTTGCAAGTTGTGAACAATGTTGACGATGCAGAGTTTATACTAGCCCATGGTACTGAAGCCCTGGGTTTAC
CTTCTGGTGATCCACTTTCGAAAAGTCTTGAGGAGCTTGAGCAGATTCTAGTGCTTGGTATACAAAAGCGACTTCCAATG
GTGGTAGCTAATCCAGATTATGTCACTGTTGAAGCTCGAAACCTGCGTGTCATGCCTGGTGGGTTAATGACTTTCATATT
TGATGCCATGCTGATTGTTTAACCATTACCAGGTAGCAGAGTTGTTTTAACTCATGAATGTATCTGCTTGCCTATCCTAC
ACTATAAATTTGGACATTCTTTATTTCTGATTCCTGAGATATTTTT-CTAAATTTCTTCTTCAAAAAAGAGATATGTTAG
AAGTATGGCCATCTTTTACAGTGCCAAGTGATGGTGGTAATATAATGTTTCTCTTTTAGGCACCCTGGCAGCAAAATACG
AGAGTCTTGGTGGTGAAGTAAAATGGATGGGGAAGCCTGATAAGGTAATGCATGGCGTGTCGGAGTATTTGTAGAC----
-----TT-ACGACTGATTCAACAACTTAAACACAATACAGAACTGGAATGGCATTCATGCTATGATGACCCACAGCATTA
TGAACTTGTGATTGCAACTGTACTTTAT-----------------------------------------------TACTA
CTTGCTTTA---ACAGCCTCCTCTCGGATCATCCTTTCTGTATTCAAGTTTTTGTGTGGGAAACTGTCCCCCGGCTCTCG
CCAGGTACTGACTTAGCTGCTGCTTTCTCAGGTTATCTATACATCAGCAATGTCCCTAGCAGGTGTTGAAGCACATGAAT
GTATCACCGTAGGTGATTCGCTGCACCACGACATCAAAGGCGCAAATGGAGCCGGAATGGCATCTGCATTCATCACTGGA
GGTATCCATGCGGCTGAACTTGGACTCGGTGAATTTGGAGAAACTGCTGGAGATGATGCCGTCAGTGCGTTGTGTTGCAA
GCATAGCTCATACCCATCTTACGTTTTGCCTTCATTTGCATGGTAGAAAACACGGTTTAGATTCAGGCACACCGTTTAAA
CGGGATTGCGGTCTAGGATAATGATGCTCTTTTCAGTTGTCAAAGTGAGCATCAAGACCGTGGAGGT-GTTTCAGTGCCG
CGCTAAATTATTAGCGTTATGCATTTTCCGGAAATAAAATATCTGTTGATTTGATTGATAAGAACTACATGCAATCATGT
GTGGAGGAATCATCCTTTGTGAAATATTTATATGCATTGTCAAAC--TATGCTCCAAAACCCAGGCGGTATACAACATAC
TCTGTTGGGAAGCTGGCTTGATGGTTTGATCTGGAGGATAAAGTCT--T--GATTCTGGCAGAGGAAATGCCACTTGTTG
GTTGGCTACGTTGTAATGATGCTACGTTTGAGAGGAAGCACCGCGGCGATCTTCAGGTGGGTGCTAGGATCGTGGGCATC
CTTGCAGAAACCGGAGTTGCAACTTGCAAGAACTCCATACCAATACCATAGCCTTGAGGAGCAAACCACTGGAGACAGTG
GGGATTACATTCTTTTGCACTGAAGCATGACAAAGGAAAACGGCGATGGCATCATTCACATGTTTTGCAGGTAAACAGTT
GAGTAACTGCTCTTCAAGAGAATGAATCTTCAAATTATGGAGTAATGGATGTTTTTTTAGGGAACCTCGCTCAATTTTAT
TCAACAACCATGTTCAAAGGAACC--------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------
>chr7D_1
GTTGGGATAATTATCTTCATTACCAT-----GTGCATTCCTGCAGCAGAACTATTTTCTGAATTATCTCGCATGATGATT
TCGTAATGGACACTTGATAATCATCGTACGTGCTTTGTGAAAAACAGGCACTTGGAGAACACGGTGTCATATGCTTGGAA
GACGTGGTGCACGAAATCTCCACGGTCGGGCCACACTTCAGAGAAACGGCGAGCTTTCTCATGCCCTTCAAGCTCAAGTG
TCCGGAGAGGAGGCTGCGGATGAAGAAGAAGCCCTTCAAGGATGGTGGCGACTCGGGCAACCGTGGGGACAAGATCAACG
AGCTACTCGAGAAGCTGAACTGAGGCAGTCTCCAACCTGCGTCCGCAAACAAGCGATGGATCCGTTATTACCTTGTCGGT
TTTGTAATAGCATAGCTGAATGTACCTTTGTTTTGGAAACCCTGCCTGAGTGTTTGGGATCAAATCACGAAATA------
-CTGTTCTTCGCCCCT-----------------CGCTCTGTCCTTCATGATCGATCTGCCGTGCTTTGCTTGCGCTGA--
-------------------------------------------CAGACTTAGTGAGGTTGGATGATATTGCAACAAAACA
TCAGGTTCTCTGGGCGCTCTGTACTTTAGCTATTTTGCCAGATTTGAGAACACTC-TCTGTTTGACAGCAATTCTTCATG
CTGCATACTGACTG----------CATAGGAAGA--AGAATGTTGCAAACAGCGAACCTGCATCCATGTCCACGGTTACG
ATGGCCGTGGTGGCCGGCGAGACGCCGCAGTCACGCGGCGTATATGCC---------GCTCGTTTGCTGGTACTCGGCCC
AGCCACTACCTGGTTGCTTGGCGTCCTCGTTGCCTTACCCTTCCAAACGAGCTCCA-----------------TCGTCTC
CACTCTCCACAGCCCA------------GCCTCCACCTACCGCAGCACCAGGTGCTCTCGTCGCGCG---GCGGCGGAGA
GGATGTCATCGGCGCCGGCGCCGGTGTTCGAGAGGCTGGCCGGGATCCGGCCCCTCGCCGAGTCCGGCCGTTTCAAGGCA
AGCTCCCCG------CGCCCCCACCCTCCTCACACAGAATCGCCGCTCGTTTTGCT------------AGCAGAAGTGCT
AGGACTAGGGGCGCCCCATGAATTGGTCTTGCGTTGCTAATTCGGATAACGAGATCACGCATAGGGTTCATGTTGTCTGC
GGGATTTCAGCTAGAAATTGGGGAAAAGTTGGTTCCTCTGCCCATAGCATCTGGTCGTTTCTATCGCTACGAGTACCCAT
ACCATTTGCTTCTGTTGCTATGATTTGTTCACGGCCGAGTTTGTCTGGCAGGCATGGTTCCTGGACCAGTTCGGCGTTCT
TCATGACGGGAAGAAACCCTACCCCGGCGCCATTTTGGCATGTATGTTGGTCCACACATCGTAATTTATCTTCAGTTTAC
TGCTGCATCTTTGTGCTGCAATGTG-----ATATGATAGTCAAGTGAGGCATGCATGTTTCAGTGGAGAAGCTCGCTGGG
AATGGCGCCAAGATGGTGATAATCAGCAATTCCTCGAGGCGGTCGTCTGTAACCATGGAGAAGCTGCAGAGCCTTGGGTT
TGACACGTCTTGTTTCCTCGGGGCGATCACCAGCGGGGAACTCACCCAGCAGTACCTTCACAAGTAAGCCTTTTATGCTG
ATATTTCTTCTGTGGTTATTTGGTATAGCTTA------------------------------------------------
--------------------------------------------------CTCAGAAACTTAAGTTAAAACTTCTGATTT
GGTTTCGTAAACGTAGGAGGGATGACCCATGGTTTGCATCTCTGGGAAGGAAGTGTATCCATCTGACATGGGGCAATCGA
GGTGCAATTTCTCTGGAGGTTTGTTCTTCTGTTGTTTTTCTTTGGCAGTTGTTTCTTCTAAGGAATATTAGCATCGAATT
TGGTGTGGCATACTCATGTATTCCTGCCAAATGGCTGAGGTCATCTAACATATATGAAGAAGTATTAATGATGACAAAAA
TGTGATATCAAAAAGCATTGTTACTTATGAGGCACTTTTACAAGATTCCATGTCAAATGTTTTCTTGTTTTCTCCTATTA
GGGACTTGGTTTGCAAGTTGTGAACAATGTTGACGATGCAGAGTTTATACTAGCCCATGGTACTGAAGCCCTGGGTTTAC
CTTCTGGTGATCCACTTTCGAAAAGTCTTGAGGAGCTTGAGCAGATTCTAGTGCTTGGTATACAAAAGCGACTTCCAATG
GTGGTAGCTAATCCAGATTATGTCACTGTTGAAGCTCGAAACCTGCGTGTCATGCCTGGTGGGTTAATGATTTTCATATC
TGATGCCATGCTGATTGTTTAACCATTACCAGGTAGCAGAGTTGTTTTAACTCATGAATGTATCTGCTTGCCTATCCTAC
ACTATAAATTTGGACATTCTTTATTTCTGATTCCTGTGATATGTTT-CTTCTTTTCTTCTTCAAAAAGGAGATATGTTAG
AAGTATGGCCATCTTTTACAGTACCAACTGATGGTGGTAATATAATGTTTCTCTTTTAGGCACTCTGGCAGCAAAATACG
AGTGTCTTGGTGGTGAAGTAAAATGGATGGGGAAACCTGATAAGGTAATGCATGGCATGTCTACTC-TTTGTAGACTAAA
GTCACTAAACGACTGATTCAACAACGTAAACACAATACAGAACTGAAATGGCATTCACGCTATGATGATCGACTGCATTG
TGAACTTGTGATTGCAGCTGTACTTTACCACTACTTTAGTGATCCAAAACGTCTTATAAAAGTTTACAGAGGGAGTACTA
CTTGCTTTA---ACAGCCTTCTCTCGGATCATCCTTTCTGTATTTAAGTTTTTGTGTGGGAAACTGTCCCTCGGCTCTCG
CCAGGTACTGACTT-GCTGCTGCTTTCTCAGGTTATATATACATCAGCAATGTCCCTAGCAGGTGTTGAAGCACACGAAT
GTATCACCGTAGGTGATTCGCTGCACCACGACATCAAAGGCGCAAGTGGAGCCGGAATGACATCTGCATTCATCACTGGA
GGGATCCATGCGGCTGAACTGGGACTCGGTGAATTTGGAGAAACTGCTGGAGATGATGCCGTCAGTGCGTTGTGTTGCAA
GCATAGCTCATACCCATCTTACGTTTTGCCTTCATTTGCATGGTAGAAAACACGGTTTAGATTCGGGCACACCGTTTAAA
CAGGATTGCGGTCTAGGATGATGATGCGTTTTTCAATTGTCA-AGTGAGCATCAAGGCCGTGGAGGT-GTTTCAGTGCCG
CGCTAAATTATTAGCATTATGCATTTTCCGGCAATAAAATATCTGTTGATTTGATTGATAGGAACTGCATGCAATCATTT
GTGGAGGAAACATCCTTTGTGAAATATTTATATGCATTGTTAAATTATATGCTCCAGAACCCAGGCGGTGTACAACATAC
TATGCTGGGAAGCTGGCTTGATGGTTTGATCTGGAGGTTAAAGTCTTCT--GATTCTGGCAGAGGCAATGCCACTTGTTG
GTTGGCTACATTGTAATGATGCTACGTTTAAGAGGAAGCACCGCGGTGGTCTTCAGGTAGGCGCTAGGATCGTGGGCATC
CTTGCAGAA-----------------------------------ACCATAGTCTTGAGGAGCATATCACTGGAGACAGTG
GAGATGGCATTCTTTTGCACTGAAGCGTGACAAAGGAAAACGGCGATGGCATCATTCACATGTTTTGCAGGTAAACAGTT
GAGTAACTGCTCTTCAAGAGAATGAATCTTCAAATTATGGAGTAATGGATTGTTTTTTAGGGAACCACGCTCAATTTTAT
TCAACAACCATGTTCAAAGGAACC--------------------------------------------------------
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>SNPs
------S-------------------------S---------------------------S-------------------
----------------S-------S---S---S--SSS-----------S------------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------S-----------------S----------------
-------S-----------------------S----S--S-S--S---------S-----S-------------------
--------------------------------------------------------------------------------
----------S---------SSS--S------SS------SS----------------S---------------------
---S---S----------S--SS----S--S-----S------------S-----S-------S---------------S
-S----------------------------S-------------------S---SS-----S----S-S----S-----S
S----SS---------------S--------------------------------------------------S------
---------------------------------------------------------------------S----------
--------------------------------------------S---S------SSSSSSSSSSSSSSSSSS----S--
--------SSSSS--SSSSSSSSSSSSS-------------------SS---------------------------SS--
-----------------S-------------------------------S------------------------------
---------SSSSSS--------------------S---------------------S----------------------
-----------------S---------S---------------S-----------S------------------------
-------------------------S----------------S--SS------------------------------S--
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------SSSSS--------------------------------------------------
--------------------------------------------------------------------------------
------------------------------S------------S------------------------------------
-----------------S---SS-SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S---------------
-------------S------------------------S-------------S---------------------------
--------------------------------------------------------------------------S-----
---S-----------------------------------------------S----------------------------
-------------------S------------------------------------------------------------
------------------------------------------------------------------------S-------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
---------------------------------S------------S---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------S------S--S------------------------S------SS----
--------------------S----------------------------------------------------------S
--SSS-SSSSSS----S-------S------S----------------------S-------------------------
--------------S-S---------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
----------------------S--------------S------------------------------------------
-----------S--S------S-----------------------------------S---------S------------
-S--------------------------------------------------------------------------S---
----------------S---------------------------------------------------------------
-----------------------S-------------------------SS-----------------------------
-----------S--------S-S-SSS--SSS------------------------------------------------
------S--------------------S--S----SS-----------------S-----------S---------S---
---------------S--------S----------SS---------------------------------S----S----
S------------------S-----------------------------------------------S------S-----
-----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_506
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------ACTGTTCTTCACCCCGTGTC------------------------------------------------------
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>reverse_1794
--------------------------------------------------------------------------------
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---------------------------------ACCGGTAAGGGTTTTATGGGG--------------------------
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>forward_1178
--------------------------------------------------------------------------------
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--------------------------------------ATCGCCTCTCGTTTTGCTCA----------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_2075
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGAATT
TGGCGTGGCATACTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_1327
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GCTGGTTCCTCTGCCAATGA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_3055
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TGTTGCTGCTTTCTCAGGTT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>forward_2876
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ACGCTATGATGGCCCACAAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>reverse_4264
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TCAACAGCCTGCAAACAACG-------------------------------------
----------------------------------------------
