>input_sequence_36464
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----------------------------------------------------------CAAGCCTACACACACCCATCCG
ATCCTCTCTCT------TCCCTTCAGAAGAAAGAACCAAAAAAGTTGGGCCGTGCAAGGAAGGATCGGAGCCGCCGCGGG
ATGGGGCTGCCGCTGCCGCGTCGCTGCTGCAACTGCGGGGATCCGGTGACCATGCCCTACCTCGGCGGCCACGGAAGGGC
GGCGGCGGCGGCGGAGGGCGGAGAGCAGCGCCCTCCCTGGGTCTCTCATCTCGCCGCCGCGGACTTCTCCAAGCCGTGCT
CCAGGGACCGCGTCTGCGACACGTGCGGCGGCGCCGCCTTCTGCGGCCACTGCTGCGAGGAGCACCACCGCGGCCACGTC
ACCTCCCCCGCCCCCACCGACGACGACGCCACCGACCACCGGAGGGATTCCTTCTGCATCGGCTGCCGCGTCGCGTTCTG
CTCCGAGCTGTGCGCGCACCACGGACTGGGCCACGAGGTTATCCTCGTCGACGAGTACGAAGGATGGCACTGCGCGCGAT
GCACCGGGTCGGAGCGGTGGTTCGCCGTCTTCGCGGGCATCCAGGTCTCCACGAGATCCATGGATTCGGGGTTTTTTACT
CTCGAATTGATTGATCGTGCCAGTTGATTCGGGGTTCCCCGACTGGTTTGGCTATGCTGCAGACCTTCCGGGACAACGAG
GGCAATCTGCTGGTGCCGCTGCACCGGAAGCCGGCTGCAGCTGCAAAGCCGGTCGAGGACGGACCGTGGCCTCCTCCGTG
GATGTTCGAGCTCGTCACCACCGACTTCGCCAAGACGTGCGCCCGGGACCGGGTCTGCAACACCTGCGTGGGCGCCGCCT
TCTGTGGGCATTGCTGCGGGGAACACCACCCAGGCCACGACACCGCCGCCTACATCCCGGAGGA------CGGCTTGGAG
GCTACCGTGGTGCACCGGAGAGACTCGTTCTGCACGGGCTGCCGCGTGGTCTTCTGCTCCGACCTGTGCGCGCACCACAC
AAGCGGCGAGGGCCACGAGGTCATCCCCATCGACGAGTTCATCGAGTGGCACTGCGTGCGATGCACCGGCTCCGAGCGGT
GGTTCCCCGCATTGCACTGCTTGCTCAGGCTGGTCGGTGACTTGATCGATCAACCATGCCGTGTTTT-----TAGATCGA
TCTGGGAGTGGTTGGTAGTTTCTTTGTCTGTTGATTCTTAATTTGGCTGCAGGCTTTCGTGGACGAGCATGGCAACCTGT
TCGTACCTTTCCAGTGGAACGGGGAGGTTGAGGACGGCGAGGAGTTGCCTTGGTGGATGACTCACCTCGGGACCGCAGAC
TTCTCCAAGACGTGCACCAGGGATCGCGTCTGCAACACCTGTGGCGGCGCCGCCTTCTGCGAGCACTGCTGCGGGGAGCA
CCACCGAGGCCACGACACCTGCGCAGCCGCCACGGACGAGACGGAGGGTTCGGTGGCACCCGCGGGGTACCGGAGGGACT
CGTTCTGCATCGGCTGCGGCCTCGCCTTCTGCTCCGAGCTGTGTGCGCACCACGCGGGTGGCGACGGCCACGAGATCATC
CCCGTCGACGTCTACGGCGACCGGCACTTCCTGCGATGCACCGGGTCAGAGCCGTGGTTAGCCTCCGCCTTCGGCGACAT
CGAGGTCCGTAACGCGATCGATCGGGCACCCTACTGTGACTCTTAATCTGACAGTAGTTGTAGACT-----TGTACTGTA
GTTACGTTCTTTGCTGATTGGGAATTTGGTATATGTTGGGTTGCATTTGGTGGTGCAGACTTACGAAGACAAGGACGGCA
ACCTGATGGTGCCCGGGGAACGAAAGCGGTCCATGATCCCTGAGCCGGGCCTGAGGTACGCCACTCGCCACTGCGGCGGA
ACCACCGTGCCGCCGGCCGCTGCGAACCCGTTCGTCTTCTAGGAGATCGATGGATGG------GGGTGAGGCCGTGAGGG
TCGTTAGCTAGTGAAGGAGTGGTGATTGCCTGGCTATTACATCTATGATCTGGAATATCGCGTGGCGTCCTGGCGTTGGA
TTTGAACCACCATGATCGAGGAACTTCGGAACTG----TTCGAAAGTGTCGTCGGTTGGATAGATTTCGTGTCTATATTG
AAATGCCTGGATCTTGAGATCGTCAAGCCATTTTTACATGT-GTTTTGGTTAAGCATGCGAAAGAATGTCGAACCATCTA
AGACGGATTTCCTGTTGAACAATACATTGCGAAT-------GACTTC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr1A_1_TraesCS1A01G114100
GTGTCAATCAAGAAAGAGATTGTTAATGGTTTTTTGCTGACCACAAAATTATCTAAGTAGGGATCACTTCTAAAACAAAC
CCTTCTAAAAACACACCAATAGAAATTTTTAGTGTTGGTGTGATGCAAGATCACACGGGTATGGTTGTCAATTCCTCTTT
GGATAATATTTCAGATTGTTTTAGTGTCGAAGACGTGGAGCTGGGGCCTTGTCTGACAGGCTTTTACATTGCCATCATAT
TCCAGACTTTTATATTGCCATCATATCCCCTAATCCTATGTTCCTCAAGAAGGATTGCTTAAATGTGTAGAAGCATTTGT
CAGATTCAGTGTCGAACAAAGGGCACTTATGTTGGCATGAAGAAAGGGGAGTTGGAACTTTTGCAACTCTTGCCTGATGT
ATGTTTGGTTAAGATCCACCGAGAGATGGAAACGACATAACTCATAGTATTACTACATTTTGTATGAGTGCGACTTCTGA
TGGGGTGTTGGTTGGAGCTGCCGTATGGGTCAATAATAATATATGAATATTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ATTAGTGCTAGAGCTCACGTAGATGATTGCTTTTTTTTTGAGGGATACGT----
------AGATGATTGCAGAGGATCCCAGATATGCCCCAAGAAAAAA-AACAGTGTGTACAACTGTGTACTCTCTCCGTCC
GCAAATAAGTGTACATCTAGCTTTTGTGCTAAGTCAAAATTTTAAAATTTTGACCAACTTTATAGAAAATAATAGTAATA
TATATAGCATCAAATTGATATATTATCAAAGTACAATTAAAAACCAATCTAGTGGTACTAATTTGGTGCCATAAATGTTT
TTACTTTTTTCTAGAAAGATGACCAAAGTTTTAAAACTTTGACTTAAGATAAAAACTAGATGTACACTTATTCACGGACG
GAGGGAGTACACTGCAGTGCGGAGCAGCCCAACAACTCCCA-----------G---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGTAAGTTAGG
CCCGAACACCACTCGGGCC-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATATAAAGCCCTACACATCTTCCGCTCGGAAACAAGCCTACACACACCCATCCG
ATCCTCTCTCT------TCCCTTCAGAAGAAAGAACCAAAAAAGTTGGGCCGTGCAAGGAAGGATCGGAGCCGCCGCGGG
ATGGGGCTGCCGCTGCCGCGTCGCTGCTGCAACTGCGGGGATCCGGTGACCATGCCCTACCTCGGCGGCCACGGAAGGGC
GGCGGCGGCGGCGGAGGGCGGAGAGCAGCGCCCTCCCTGGGTCTCTCATCTCGCCGCCGCGGACTTCTCCAAGCCGTGCT
CCAGGGACCGCGTCTGCGACACGTGCGGCGGCGCCGCCTTCTGCGGCCACTGCTGCGAGGAGCACCACCGCGGCCACGTC
ACCTCCCCCGCCCCCACCGACGACGACGCCACCGACCACCGGAGGGATTCCTTCTGCATCGGCTGCCGCGTCGCGTTCTG
CTCCGAGCTGTGCGCGCACCACGGACTGGGCCACGAGGTTATCCTCGTCGACGAGTACGAAGGATGGCACTGCGCGCGAT
GCACCGGGTCGGAGCGGTGGTTCGCCGTCTTCGCGGGCATCCAGGTCTCCACGAGATCCATGGATTCGGGGTTTTTTACT
CTCGAATTGATTGATCGTGCCAGTTGATTCGGGGTTCCCCGACTGGTTTGGCTATGCTGCAGACCTTCCGGGACAACGAG
GGCAATCTGCTGGTGCCGCTGCACCGGAAGCCGGCTGCAGCTGCAAAGCCGGTCGAGGACGGACCGTGGCCTCCTCCGTG
GATGTTCGAGCTCGTCACCACCGACTTCGCCAAGACGTGCGCCCGGGACCGGGTCTGCAACACCTGCGTGGGCGCCGCCT
TCTGTGGGCATTGCTGCGGGGAACACCACCCAGGCCACGACACCGCCGCCTACATCCCGGAGGA------CGGCTTGGAG
GCTACCGTGGTGCACCGGAGAGACTCGTTCTGCACGGGCTGCCGCGTGGTCTTCTGCTCCGACCTGTGCGCGCACCACAC
AAGCGGCGAGGGCCACGAGGTCATCCCCATCGACGAGTTCATCGAGTGGCACTGCGTGCGATGCACCGGCTCCGAGCGGT
GGTTCCCCGCATTGCACTGCTTGCTCAGGCTGGTCGGTGACTTGATCGATCAACCATGCCGTGTTTT-----TAGATCGA
TCTGGGAGTGGTTGGTAGTTTCTTTGTCTGTTGATTCTTAATTTGGCTGCAGGCTTTCGTGGACGAGCATGGCAACCTGT
TCGTACCTTTCCAGTGGAACGGGGAGGTTGAGGACGGCGAGGAGTTGCCTTGGTGGATGACTCACCTCGGGACCGCAGAC
TTCTCCAAGACGTGCACCAGGGATCGCGTCTGCAACACCTGTGGCGGCGCCGCCTTCTGCGAGCACTGCTGCGGGGAGCA
CCACCGAGGCCACGACACCTGCGCAGCCGCCACGGACGAGACGGAGGGTTCGGTGGCACCCGCGGGGTACCGGAGGGACT
CGTTCTGCATCGGCTGCGGCCTCGCCTTCTGCTCCGAGCTGTGTGCGCACCACGCGGGTGGCGACGGCCACGAGATCATC
CCCGTCGACGTCTACGGCGACCGGCACTTCCTGCGATGCACCGGGTCAGAGCCGTGGTTAGCCTCCGCCTTCGGCGACAT
CGAGGTCCGTAACGCGATCGATCGGGCACCCTACTGTGACTCTTAATCTGACAGTAGTTGTAGACT-----TGTACTGTA
GTTACGTTCTTTGCTGATTGGGAATTTGGTATATGTTGGGTTGCATTTGGTGGTGCAGACTTACGAAGACAAGGACGGCA
ACCTGATGGTGCCCGGGGAACGAAAGCGGTCCATGATCCCTGAGCCGGGCCTGAGGTACGCCACTCGCCACTGCGGCGGA
ACCACCGTGCCGCCGGCCGCTGCGAACCCGTTCGTCTTCTAGGAGATCGATGGATGG------GGGTGAGGCCGTGAGGG
TCGTTAGCTAGTGAAGGAGTGGTGATTGCCTGGCTATTACATCTATGATCTGGAATATCGCGTGGCGTCCTGGCGTTGGA
TTTGAACCACCATGATCGAGGAACTTCGGAACTG----TTCGAAAGTGTCGTCGGTTGGATAGATTTCGTGTCTATATTG
AAATGCCTGGATCTTGAGATCGTCAAGCCATTTTTACATGT-GTTTTGGTTAAGCATGCGAAAGAATGTCGAACCATCTA
AGACGGATTTCCTGTTGAACAATACATTGCGAAT-------GACTTCCACGTTGAGCTGTGTGTTGTTCGCAGCTTTTTT
CTTGTATTCGAGCTTTTGATAG--AGTTTTATCTAATTGGTTTGTGCATCCATGCATGTGATGGTATTCGGTTGTTGAGG
TGCTTCAGTAGGAGATTTGGGGCATGTAATGCTGATTTTGGTTTACTAGTAAATGCGCAAAATATTTAGGCAATATATTA
ATTGCACATATTAATTGCACGTGAATTTTAGGTATGCTATTATTTGTGTGTTAATCTTATGATTAATGCAATATTTGATA
TGATATTAATTACACGTTAAACACGTTTAATGCTCGTCATTGGAGCAGTCTAGGTTGTTGAATTAACTTAGTTCAATGGC
TGATTAGTTGGATCTGCATCTTTGGTTTTTTTTATATTGGTATATATATAGATATAGATATAGATGAATTGTTATTCCTT
GCTTTTGTTAGCTT-CCTGAATGTTAGATATTGTGTGTTACAAATTCAGTTTTGCTAAAGCACATCTAGATGTTAAGTAT
TGTACATCTAATTCATATGCCATTGATATTACGCCAAGATTCATGCGGGCACTTTTATTTGTCTTTTTCTTTCCTTTCCA
ATTTGATTCAATCACTTAGATTATTCTGGGCGATTCAGTAGTAGTATTTTTCTAACCGGCGAAAACTGAGTTTATTTCTT
GCTAAAAATTTAATGAGTGCAAGTTCCTTGATTCAGTAGTACTACTGGGTTCAAAAACTGGCTAATGCAGTGGAACTGAA
TTTTGTTTGCTACCAACCTGGGTGGCTGGGCCCATGTTCAAGAGCATAACGGGTTTGTTGCCAAAAAAAATACCTAGTCA
ATACTTTCTCCGTTTCGAATTACTTGTCGCAGGTATGAATGTATCTAGATGTATTTTAGTTCTAGATACATTCATTTCTG
CGACGAGTAATTTGGAACGGAGGGAGTACTTAGCAAGCCAAATAAATTCAGCAACTTTAGTGGGTAAAAGAGTATTGTTA
GTGATGCAAA
>chr1B_1
GTGACAATCAAGAAATAGATGTTTAATGGTCTTGTGCTGATTACAAAATTATCTAAGTAGGGGTCACTTCTAAAA-----
----------ACACACCAATAGAAAATTTTAGTGTTGCTGTGATGCAAGATCACACGGGTATGGTTGTCAATTCCTCTTG
GGATAATATTTCAGTTTGTTCTAGTGTCGAAGACGTGGAGCTGGGGCCTTGTCTGACAGGCTTTTACATTGCCATCATAT
TCCAGACTTTTATATTGCGATCATATCCCCTAATCCTATGTTCCTCAAGAAGGACCGCTTGAATGTGGAGAAGCATTTGT
CAAATTCAATGTTGAACAAAGGGCACTTGTGTTGGCATGAAGAAAGAGGAGTTAGAACTTTTGCAACTCCTACCTGGTGT
ATGTTTGGTTAAGATCCACCGAGAGATGGAAACGACATAACTCATAGTATTACTAAATTTTGTATGAGTGCGACTTTTGA
TGGGATGTTGGTTGGAGTTGTCGTATGGGTCAAT-ATAATATATGAATATTCGATGCTATATGTTGAGTTGTTTTCAAAA
GAATAAAGAGTAGTAAAACATTGTGCAACTTTTTTTAAACAATCACACAAAGCT--TTTTTTATTAAATCATCACAATGT
CTAGATGGACGAAACTAAGATCACCGGGCTGACCTAATCAAGCATGGCGGCCAGCCCCTAAAGAAAGGGCATGCTTCGCT
AGATTGTGAGCCTTAACATTCGAGCTCGTATACTCATAACTAAAATTGCAACTAGTAAAAATGCTAGAATGATCAACAAT
TTCTCAAATAATTGCACCATAAACTGCCGCGCTTCTCTACTTGATATCCTCATTGACAACCTTGCAATGCGATGCCACCT
GGATGTGCTGCTCATAAAGATCATCCGATAGTGCTAGAGCCCCTGAAGTT------TTTTTTTTTGACGGGTTCTAGAGC
CCCCGAAGATAATTGCAGAGGATCCCAGATATGCCCCAAGAAAAAAGAAACA-GTGTACAACTGTCTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CTCCAATGCCGAGCAGCCCAATAACTTCCAATCGGGATCCAG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGTATGTTCGG
CCCGAACACCACCTTTTGTTTTTATGAGTG--------------------------------------------------
--------------------------------------------------------------------------------
---------------ACTCGGGCCTTATATAAAGCCATGCACATCTTCCGCTGGGAAACAAGCCT--ACACACACAAACG
ATC--------CTCTCTTCCCTTCAGAAGAAA-AACCAAAAAAGTTGGGCCGTGCAAGGAAGGATCGGAGCCGCCGCGGG
ATGGGGCTGCCGCTGCCGCGTCGCTGCTGCAACTGCGGAGATCCCGTGACCATGCCCTACCTTGGCGGCCACGGAAGGGC
GGCA---GCGGCGGTGGGCGGAGAGCAGCGCCCTTCCTGGGCCTCTCATCTCGCCGCCGCGGACTTCTCCAAGCCGTGCT
CCAGGGACCGCGTCTGCGACACGTGCGGCGGCGCCGCCTTCTGCGCCCACTGCTGCGAGGAGCACCACCGCGGCCACGTC
ACCTGCCCCGCCCCCACCAAGGACGACGCCACCGATCACCGGAGGGATTCCTTCTGCATCGGCTGCCGCGTCGCGTTCTG
CTCCGAGCTGTGCGCGCACCACGGCGTGGGCCACGAGGTCATCCCCGTCGACGAGTACGAAGGATGGCAATGCGCGCGAT
GCACTGGGTCGGAGCGGTGGTTCCCGGTCTTCGCGGGCGTCCAGGTCTCTGCGAGATCCATGGATTCGGGTTTTTTTACT
CTCGAATTGATTGATCGTGCCAGTTGATTCGGGGTTCCCCGGCTGGTTTGGCTATCCTGCAGACCTTCCAAGACAACGAG
GGCAATCTGCTGGTGCCCCTGCACCGGAAGCCGGCTGCAGTTCCAAAGCCCGTCGAGGACGGACCGTGCCCTCCTCCGTG
GATGTTTGAGCTCGTCACCGCTGACTTCGCCAAGACGTGCGCCCGGGACCGGGTGTGCAACACCTGCGTGGGCGCCGCCT
TCTGTGGGCATTGCTGCGGGGAACACCACTCAGGCCACGACACCACCGCCTCCATCCCGGAGGAGAAGGACGGCCCGGAG
GCGACCGTGGTGCACCGGAGAGACTCGTTCTGCACGGGCTGCCGCGTGGCCTTCTGCTCCGACCTGTGCGCGCACCACGC
AAGCGGCGTGGGTCACGAGGTCATCGCCGTCAACAAGTTCGTCGAGTGGCACTGCGTGCGATGCACCGGTTCGGAGTGGT
GGTTCCCCGCATTGCACTACATGCTCATGCTGGTCGGTGACTTGATCGATCAACCATGCCGTGTTTTACTGTTAGATCGA
TCTGGGAGTGGTTGGTAGTTTTTTTGTCTGTTGATTCTTAATTTGGCTGCAGGCTTTCGTGGACGAGCATGGCAACCTGT
TCGTGCCTTTCCAGTGGAACGGGGAGGTTGAGGACGGCGAGGAGTTGCCTTGGTGGATGACTCACCTCGGGACAGCAGAC
TTCTCCAAGACATGCACCAGGGACCGCGTCTGCAACACCTGCGGCGGCGCCGGCTTCTGCGAGCATTGCTGCGGGGAGCA
CCACCGAGGCCACGAGACCAGCGCCGCCGCCACGGACGAGACGGAGGGTTCGGTGGCACCCGCGGGGTACCGGAGGGACT
CGTTTTGCATCGGTTGCGGCCTCGCCTTCTGCTCCGAGCTGTGTGCGCACCACGCGGGTGGCGACGGCCACGAGGTCATC
CCCGTCGACGTCTACGGCGACCGGCACTTCCTGCGATGCACCGGGTCAGAGCCGTGGTTCGCCTCCGCCTTCGGCGACAT
CGAGGTCCGTAACGCGATCGATCGG-CACCCTCCTGTTACTTTTAATCTGACAGTAGGTGTAGACTTGTACTGTACTGTA
GTTGCGTTCTTTGCTGATTGGGAATTTGGGATATTGGGTTGCA---TTGGTGGTGCAGACTTACGAGGACAAGGACGGCA
ACCTGATGGTGCCCGGGGAACGAAAGCGCTCCATGATCCCGGAGTCGGGCCTGAGGTACGCCACTCGCCACTGCGGCGGA
ACCACCGTGCCGCCGGCCGCGGCGAACCCGTTCGACTTCTAGGAGATTGCTGGATGG------GG--------GTGAGGG
TCGTTAGCTAGTGAAGGAGTGGTGATTGCCTGGCTATTACATCTATGATCTGGAATATTGCGTGGCGTACTGGCGTTGGA
TTTGAACCACCATGATCGAGGAACTTCGGAACTACTTATTCGGAAGTGTCGTCGGTTGGATACATTTCGTGTCTACTTTG
AAATGCCTAGATCTTGAGATCGTCGAGCCATTTTTACATGTGGTTGTGGTTAAGCATGCGAAAGAATGTCGAACCATCTA
CGG-------CCTGTTGAACTATATGCTGATCAGAGCTATGGAATTCCTTGTTGAACTATATGTTGCTCGCATCTTTTTT
T---TATTCGAGCTTTTGATCTGAAGTTTTCGTTAATTGGTTGGTGCATCCGTGCATGTTATGGTATTCGGTTGTTGAGG
TGCTTCAGTAGGAGGTTTGGGGCTTGTAATGCTGATTTTGGTTC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGCATTGTTATTCCTT
GCTTTTGTTAGCTTCCCTGAATGTTAGATATTGTGTGTTACAAATTC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr1D_424
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------AGATGGAAACGACATAACTCATAGTATTACTAAATTTTGTATGAGTATGACTTTTGA
TGGGGTGTTGGTTGAAGCTGTCATATGGGTCGACAATAATATATGAATAATCGATGTTATATGTTGAGTTGTTTTCAAAA
GAATAAAGTGTAGAAAAACAATGTGCAACTTTTTTTAGACAATCATCACGCGAAGCTTTTTTGTTAAATCATCACAATGT
TTACATAGACGGAATTAAAATCATCGGGCTAACCTAATCAAACATGGCGGCCAGCCCCTAAAGAAAGAGCATGCTTCTCT
AGATTGTGAGCCTCAACATTCGAGCTCATATACTTATAACTAAAATTGCAACTAGTAAAAATGCTAGAATGATCAACAAT
TTCTCAAATA-----------------------------------------ATTGACAACCATGCAATGCGATGCCACCT
GGATCTGCTGCTCATAAAGATCATCCATTAGTGCTAGAGCTAT-GTAGATGATTGCTTTTTTTT--AGGGATATGT----
------AGATAATTGCAGAGGATCCCAGATATGCCCCAAGAAAAAAAAACAGTGTGTACAACTTTTTTTTGAGACAAAC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AGTGTGTACGCTGCAGTGCCGAGCAGCCCAACAACTTCCAATAAAGCCCTACTCCCTCCGTCCTTTAAAAAGTGTACTT
CCAACTTTGTTGGAAAGTCAAACATTTTTATATTTGACCGTATTTATATAATAATACATCAACAATTATGCTGTCAAATT
AGTAGTATTAGATTCATGATAAAATATATTTTCATCATATACCTATTTGATTTGACAAATATTGATATATTTTTGCAAAA
GCTCGGTTAAACTTTAAGATAGTTTGCCCTTCAACAAAGTTGGAAGGACACATCTCGGGAATCCAGCGTCGTATGTTGGG
CCCGAACACCCAAAAAAATGAGACCAACCCAAGGGCTAACTCTCGTTGGCTTTTCTTTATAGGAGAAAACTCCGTGAGCA
CCGCGCGTCCGTGCCGGGACTCGAATTCGGGTGGGCTGGCAGCAACCTCAGCTGCCCAGCCAATGGGTCGACGCCCCGTC
CTCTTGGGCCCGACCACTCGGGCCTTATATAAAGCCCTACACATCTTCCGCTGGGAAACAAGCCT--ACACACCCATCCG
ATCCTCTCTCTCTCTCTTCCCTTCAGAAGAAA-AACCAAAAAAGTTGGGCCGTGCAAGGAAGGATCGGAGCCGCCGCGGG
ATGGGGCTGCCGCTGCCGCGTCGCTGCTGCAACTGCGGAGATCCGGTGACCATGCCCTACCTCGGCGGCCACGGAAGGGC
GGC---GGCGGCGGAGGGCGGAGAGCAGCGCCCTTCCTGGGTCTCTCATCTCGCCGCCGCGGACTTCTCCAAGCCGTGCT
CCAGGGACCGCGTCTGCGACACGTGCGGCGGCGCCGCCTTCTGCGGCCACTGCTGCGAGGAGCACCACCGCGGCCACGTC
ACCTCCCCCGCCCCCACCGAGGACGACGCCACCGACCACCGGAGGGATTCCTTCTGCATCGGCTGCCGCGTCGCGTTCTG
CTCCGAGCTGTGCGCGCACCACGGCGTGGGCCACGAGGTCATCCCCGTCGACGAGTACGAAGGATGGCACTGCGCGCGAT
GCACCGGGTCGGAGCAGTGGTTCCCCATCTTCGCTGGCGTCCAGGTCTCCACGAGATCCATGGATTCGGGGTTTTTTACT
CTCGAATTGATTGATCGTGCCAGTTGATTCGGGGTTCCCCGACTGGTTTGGCTATCCTGCAGACATTCCAGGACAACGAG
GGCAATCTGCTGGTGCCGCTGCACCGGAAGCCGGCTGCAGTTGCAAAGCCGGTCGAGGACGGACCGTGCCCTCCTCCGTG
GATGTTCGAGCTCGTCACCACCGACTTCGCCAAGACGTGCGCCCGGGACCGGGTGTGCAACACCTGCGGCGGCGCCCCCT
TCTGTGGGCATTGCTGCGGGGAGCACCATCCAGGCCACGACACCACCACCTCCATCCCGGAGGAGAAGGACGGCTCGGAG
GCGGCCGTGGTGCACCGGAGAGACTCGTTCTGCACGGGCTGCCGCGTGGCCTTCTGCTCCGACCTGTGCGCGCACCACGC
AAGCGGCGAGGGTCACGAGGTCATCCCCATCGACGAGTTCGTCGAGTGGCACTGCGTGCGATGCACCGGCTCCGAGTGGT
GGTTCCCCGCATTGCACTGCTTGCTCAGGCTGGTCGGTGACCTGATCGATCAACCATGCCGTGTTTTACTGTTAGATCGA
TCTGGGAGTGGTTGGTAGTTTCTTTGTCTGTTGATTCTTAATTTGGCTGCAGGCTTTCGTGGACGAGCATGGCAACCTGT
TCGTACCTTTCCAGTGGATCAAGAATGGTGAGGACGCCGAGGAGTTGCCTTGGTGGATGACTCACCTCGGGACCGCAGAC
TTCTCCAAGACGTGCACCAGGGACCGCGTCTGTAACACCTGCGGCGGCGCCGCCTTCTGCGAGCACTGCTGCGGGGAGCA
CCACCGAGGCCACGACACCATCGCCGCCGCCACGAACGAGATGGAGAGTTCGGTAGCACCCGCGGGGTACCGGAGGGACT
CGTTTTGCATCCGTTGCGGCCTCGCCTTCTGCTCCGAGCTGTGCGGGCACCACGCGGGTGGCGAGGGCCACGAGATCATC
CCCGTCGACGTCTACGGCGACCGGCACTTCCTGCGATGCACCGGGTCAGAGCCGTGGTTCGCCTCCGCCTTCGGGGACAT
CGAGGTCTGTAACGCGATCGATCGG-CACCCTCCTGTGACTCTTAATCTGACAGTAGTTGTAG-----------------
-TTACGTTCTTTGCTGATTGGGAATTTGGGATATTGGGTTGCA---TTGGTGGTGCAGACTTACGAGGACAAGGACGGCA
ACCTGATGGTGCCCGGGGAACGAAAGCGGTCCATGATCCCGGAGCCGGGCCTGAGGTACGCCACTCGCCACTGCGGCGGA
ACCACCGTGCCGCCGGCCGCGGCGAACCCGGTCGACTTCTAGGAGATCGACCGATGGGGGTGAGG--------GTGAGGC
TCGTTAGCTAGTGAAGGAGTGGTGATTGCCTGGCCATTACATCTATGATCTCGAATATTGCGTGGCGTACTGGCGTTGGA
TTTGAACCACCATGATCGAGGAACTTCGGAACTG----TTTGAAAGTGTCGTCAGTTGGATACATTTCGTGTCTACTTTG
AAATGCCTAGATATTGAGATCGTCGAGCCATTTTTACATGTGGTTGTGGTTATGCATGTGAAAGAATGTCGAACCATCTA
CGG-------CCTGTTGAACTATATGCTGATCAGAGCTATGGAATTCCTTGTTGAACTATATGTTGCTCGCATCTTTTTT
CTTCTATTCGAGCTTTTGATCTGAAGTTTTCGTTAATTGGTTGGTGCATCCGTGCATGTTATGGTATTGGGTTGTTGAGG
TGCTTCAGTAGGAGGTCTGGGGCTTGCAATGCTGATTTTGGTTC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGCATTGTTATTACTT
GCTTTTGTTAGCTTCCCTGAATGTTAGATATTGTGTGTTACAAATTC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>SNPs
---S-----------S----SS--------S--S------SS--------------------S------------SSSSS
SSSSSSSSSS---------------S-----------S-----------------------------------------S
--------------S-----S-----------------------------------------------------------
------------------S-----------------------------------SS----S------S------------
--S-----S---S---------------S-----------------S------S---------------S-S----S---
-------------------------------------------------------S--------------------S---
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------SS------------------------------------
----------S------------------------------------------------------S--S-SSSS-SSS-S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S--S-S----S---------S----------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S---S--
------------SSSSSSS-------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S------------SS-------------
--------------------------------S-----------------------------------------------
--------------------------------------S-----------------------------------------
---SSS----------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------SS-------------S----S-----------------------------------
-----------------------S--------------S-----------------------------------------
-------------------------------------------------------S-------------S----------
----------------------------------------S---------------------------S-----------
------------------------------------------------------S-------------------------
--------------------------------------------S------S-----------------------S----
--S----------------------------------------------S----------------------------S-
------------S---------------------------S-----------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----------------S--------------------------------------
-------------------S----S-------------------------------------------------------
----S--------S------------------------------------------------------------------
-----------------------------------------------------------S--------------------
-------------------------S------S-----------------------------------------------
-----------------------------S----SSS-SSSSSSSS--------------------S-------------
----------------------------------------S---------------------------------------
--------------------S-------------S------------------------------SSSSSSSS-------
----------------------------------------------------------S---------S-----------
--------------------------------------------------------------S------------SS---
--------S---------------S--------------------S----------------------------------
S-SSSSSSSS----------S---SSS--SSS-S---------S----SS-----S--S-S-----S-----S-------
---S----------------SS--------SSS---------S--------S-------S--------------------
--------------S--------S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_1594
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CCCAACAACTCCCAGCGTAA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_3752
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CCGTGAGGG
TCGTTAGCTAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>forward_3749
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGATCGATGGATGGGGGTGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>reverse_4806
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTTGCTACCAACCTGGGTGG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
