>input_sequence_36347
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-------------------------------------ATGTCGGCGAAGAAGGGGCTCTCGAGCACGCTGCGGAACCTCA
AGGTGAGGAATCGATCCCTCTGCCCTCCCGGCTGCTTCCTCTCGCCATGGCCTGGCCTCTCACGGGC-GTGTTTTCTCTT
CTCCGCGTGCGTGCGCGGTGGCGCAGTTTATGCAGCGGGCGGCGGTGGCGCAGAAGATTGAGGACAAGGCCGATGTGGAG
GTGGAGGAGGCGGCGGCCGAGGTGGTGATGACGCCGGCGGCCAACGGAGGGGGTGTCGGCTCGTCGGTCCAGGTCGCCAG
GAAGTGGTA----TGTGGGTTGTTGACTGGCCCGGTTCTTCTTCGCTGCATAT-GTTCTTCCCGTGCTGCTGTATTTTGG
CT-GGGTATGCTCGGGTTAGGGAAGTGGTTGTATAGGATTTTAGATT--------TGTTGTTATTAAGACTGTACGATTG
CGATGCAATTCTAGTAATATTTCTGCTAGCATAGTTACTGACCCCTGCGCAAATGAAAATTGATGAAGATCGCTCTGTTT
TCGGATTGGAAGTTTGATGCAAAAGGGAACTCACACAAACTCTTGTGAACATTAACCAACAGTTTTACTCAGGAAAGTGC
CACATATTGGTGAAAAGC-------------------------------------------ATGCCGTAGAAATGCAATT
CCAGTAACTTGTGTGCTATAGTTTAGTTCCTGACCCCTGCGAAGCCGGAAATCGATGAAGAGTCACACCACTTTTGGTTC
AAGTATTTGGTG--CAAAAAGAAACTCATGCATACTTCTGTGAACGGTACCAGTTTCCCTTAGGCAAATGCGCAT-----
-------------------------TGTGCTTATGCAGCTGCACCTAGTAACTGTTTGGGAGAGGGAAACTGTTGGCATA
GTGTTACAT-----GCTTTTGTGTCTATCTTTTGAACTTCAATCATACTTTGCAGTCTGGTCATAAATTTAAAACATGTT
CAACAAATTTATTACTCCCTCCGATCCATATTACTAAAT--------------------------CAGCGACAAGTAATA
TGGATTGGAGGGAGTAGTTGTTTTGTCAGATTTTTTTTTCATCCAGTTCCATCTTTAGATTT-ACTGCCTTTCTTATGCA
GCACAATATCCATGAAGAATTACTAGCTTTGATTTGTCACCGCAGACTAAGAAAAACTAGTTTC-TTTTTTTTCAGTGTA
GTTGTCATGGAGGGTAATCCGCTTCCAGGAGCTGTAAAGGGTCGAATGTCATTCCAAAATTTCAATCCATCCATTGATGT
GAGTTCTGTAGCTTTTTGTCCTTCGGGCTG-TTATGTCCTTTAGATGTATGTTCCCTTACACAAGCCTAGACCTGTAGAA
ACTAAATGACGAGGCAAGTGGTCGCCCAACACAATCAGCTTCACCTAGTAATTCTCAACAAGACAGTGCAAATACCAGCA
GGTTAGCTACTACCATGATTCTTTTTCTCTTCTCTGTTAAGTTACCTTGGAAATGTTGTCAGTCACAAGTTTCATTTTAG
CTAT-TTGCCAAGATTGATGCATTGCAAATGTGTGAAGTAATTAT---TTAGTTAAGGTTGCTTAATTTGGACCAATTTG
ATCAACGACATGTCGAGAAAACCTGTAGATTCCACTTTGTTGAGCTGGGCATGTCTATC-CTTGAAGTGCTCAAATACAA
GTTATATACTCAGAGGAACTGTATACTTTCAAGCTGTGTG------AATGAAGGACGATGGTATT------TTATTTTTT
ATTTTAAGAAGTTAT-ATTGATAGAGGACATAAACAACTTTAGATTGGCGTACATACTGGGTGATGT-TTTATTTATTTC
TGATGCAGTTCTTTTATGTTCAAACTATTGCTAAAAATTAGATTCAGTTTGATATCGTGAGTCCTTCTAGTGTGCCATAC
ATAATTGATATTGTATTCACCAGAAGAACACTTGCATTTATACATG--GTATATGTCTTCATCAGCTGTCTTTGGCATAT
GTAGTTTTGAGGCTTTTTGATGACTTAAGTGGGAAATGAAACTGCAGAGTGGATGATATATCAGCATCAAGATTTAGAAG
CTTCAATGTTGATAGTTCAGAAAGCATATCTCTGAACGAGTTGAAGAGAAAAGAGCCTGAGCTGGAGATGGAAACACCAC
CATCGCGCAAGCTCCCAAAGACGGCCGGCCAGAGCGTGGACGGCCAGCCGTCTTCGCAGAGCAATGGTCGTGGGTCTGGC
AAGTCGAACAAGCATGAAAAGCTTGACTTCAATCTTCTCAGAAAACGGAAATCAAAATGA--------------------
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>chr3B_1_TraesCS3B01G078900
CGACGTCGAGGAGGTACCTCTTCTCCCCCTCGGCGACGGTGATGGTGTCGCCGACCGTGACCGTGGAGTAGTTCTTCAG-
--GTTGTGCTCGAGCAGCTCTTTCTGGTCCTTGGCGCCCAGGAAGTCGGTGGTGTGCGGCCGCAGCTTGATGGACGTGGC
CTTGGGGAGCGACGTGCTGGTCATGAGCACCAGGTCGCCCTCCTCCAGCCCGGGCCGCGCCATGGCGTGGGCGGGCACGT
GCACGAACCCCTCCTCGCAGCCAAACTCGAGCACGCCGCAGTGGGAGGCCGCGAGGGTGGCGGCGTTCTGGACGCGGAAC
AGCATCGGGTAGCCCGCCCCAACCGACTGGAGCCGGTCTAGCGCCGACGCCGGCATCACGACCCAGTTGCCGTCGTCGCT
CTTGCACAGCTGCGA------CATGGGGCGGCACCGGAGGTACTGCGCCCACCCGCGGCGCGACCGCTGCTGCCGGAGGT
ACGCCTGCCACGCCGCCTCCGCCTCACGCGCGTGCTCCTCCTCCTTGCTCTCCCACTGCATCGCCGATGATCCACCCGTC
GCTGCCTCCATGAGAAGAGATAAAATCAAATCACAA-------------------------------GATGGATCTGAAG
TTTACAACGAACTCGATGGATCGATGGATCAATCTGCGAGTCCAGCCGTGGGTTTGCGCCCGATTTTATCGATGCGTTTC
GTGGGTGCTA---------CGGTCCGAGTAGAACCGGGGGCCGACTACCATACGGTGTAGTGTAGGTCGGTAAACCGGGC
CCGCGTGGCGGTGAGACGACCCAGCCGGAACCCGGGCCTGTCCATGATAAGTGGGCCCGGCCCGTCAGAGCCAAACCCGG
GCTTTG-------------------GTTCGGTTGAGTCAA--GTCCGTCTCTGTTTCTGCTCGTGCTCCCCTCCTCCTCT
GTTCTCCGGTGTTCCTCCCGCGAGACGAGACGGCCGCCTCTAAACCCTAACCCTAGATTGGATTATCG-GGGCTGCGAGA
GGGAGAGGGTCGGAGCGGCGGCGGCGGC------GAGATGTCGGCGAAGAAGGGGCTCTCGAGCACGCTGCGGAACCTCA
AGGTGAGGAATCGATCCCTCTGCCCTCCCGGCTGCTTCCTCTCGCCATGGCCTGGCCTCTCACGGGC-GTGTTTTCTCTT
CTCCGCGTGCGTGCGCGGTGGCGCAGTTTATGCAGCGGGCGGCGGTGGCGCAGAAGATTGAGGACAAGGCCGATGTGGAG
GTGGAGGAGGCGGCGGCCGAGGTGGTGATGACGCCGGCGGCCAACGGAGGGGGTGTCGGCTCGTCGGTCCAGGTCGCCAG
GAAGTGGTA----TGTGGGTTGTTGACTGGCCCGGTTCTTCTTCGCTGCATAT-GTTCTTCCCGTGCTGCTGTATTTTGG
CT-GGGTATGCTCGGGTTAGGGAAGTGGTTGTATAGGATTTTAGATT--------TGTTGTTATTAAGACTGTACGATTG
CGATGCAATTCTAGTAATATTTCTGCTAGCATAGTTACTGACCCCTGCGCAAATGAAAATTGATGAAGATCGCTCTGTTT
TCGGATTGGAAGTTTGATGCAAAAGGGAACTCACACAAACTCTTGTGAACATTAACCAACAGTTTTACTCAGGAAAGTGC
CACATATTGGTGAAAAGC-------------------------------------------ATGCCGTAGAAATGCAATT
CCAGTAACTTGTGTGCTATAGTTTAGTTCCTGACCCCTGCGAAGCCGGAAATCGATGAAGAGTCACACCACTTTTGGTTC
AAGTATTTGGTG--CAAAAAGAAACTCATGCATACTTCTGTGAACGGTACCAGTTTCCCTTAGGCAAATGCGCAT-----
-------------------------TGTGCTTATGCAGCTGCACCTAGTAACTGTTTGGGAGAGGGAAACTGTTGGCATA
GTGTTACAT-----GCTTTTGTGTCTATCTTTTGAACTTCAATCATACTTTGCAGTCTGGTCATAAATTTAAAACATGTT
CAACAAATTTATTACTCCCTCCGATCCATATTACTAAAT--------------------------CAGCGACAAGTAATA
TGGATTGGAGGGAGTAGTTGTTTTGTCAGATTTTTTTTTCATCCAGTTCCATCTTTAGATTT-ACTGCCTTTCTTATGCA
GCACAATATCCATGAAGAATTACTAGCTTTGATTTGTCACCGCAGACTAAGAAAAACTAGTTTC-TTTTTTTTCAGTGTA
GTTGTCATGGAGGGTAATCCGCTTCCAGGAGCTGTAAAGGGTCGAATGTCATTCCAAAATTTCAATCCATCCATTGATGT
GAGTTCTGTAGCTTTTTGTCCTTCGGGCTG-TTATGTCCTTTAGATGTATGTTCCCTTACACAAGCCTAGACCTGTAGAA
ACTAAATGACGAGGCAAGTGGTCGCCCAACACAATCAGCTTCACCTAGTAATTCTCAACAAGACAGTGCAAATACCAGCA
GGTTAGCTACTACCATGATTCTTTTTCTCTTCTCTGTTAAGTTACCTTGGAAATGTTGTCAGTCACAAGTTTCATTTTAG
CTAT-TTGCCAAGATTGATGCATTGCAAATGTGTGAAGTAATTAT---TTAGTTAAGGTTGCTTAATTTGGACCAATTTG
ATCAACGACATGTCGAGAAAACCTGTAGATTCCACTTTGTTGAGCTGGGCATGTCTATC-CTTGAAGTGCTCAAATACAA
GTTATATACTCAGAGGAACTGTATACTTTCAAGCTGTGTG------AATGAAGGACGATGGTATT------TTATTTTTT
ATTTTAAGAAGTTAT-ATTGATAGAGGACATAAACAACTTTAGATTGGCGTACATACTGGGTGATGT-TTTATTTATTTC
TGATGCAGTTCTTTTATGTTCAAACTATTGCTAAAAATTAGATTCAGTTTGATATCGTGAGTCCTTCTAGTGTGCCATAC
ATAATTGATATTGTATTCACCAGAAGAACACTTGCATTTATACATG--GTATATGTCTTCATCAGCTGTCTTTGGCATAT
GTAGTTTTGAGGCTTTTTGATGACTTAAGTGGGAAATGAAACTGCAGAGTGGATGATATATCAGCATCAAGATTTAGAAG
CTTCAATGTTGATAGTTCAGAAAGCATATCTCTGAACGAGTTGAAGAGAAAAGAGCCTGAGCTGGAGATGGAAACACCAC
CATCGCGCAAGCTCCCAAAGACGGCCGGCCAGAGCGTGGACGGCCAGCCGTCTTCGCAGAGCAATGGTCGTGGGTCTGGC
AAGTCGAACAAGCATGAAAAGCTTGACTTCAATCTTCTCAGAAAACGGAAATCAAAATGAGGTCCGGGTTAGCATCAGCC
AAGGCTAGCTCCGTGTACTCTTG-TGTCGCCATTTCTACCCTGTACCTGATCAGCCTTTGTGCGTTGTTCCCTGAATTAT
TTATGCCGTAGCAGGTAGCCAGGTAAAACCGGCAGTGGTATATCTGTTGTTAACTTAGTTGGAAGGTTTACTACTGCTTT
ACATATCTTATTAGTTGGGGAGGTTCTGTGTTCTTCAACACTTTTCTCTCTTGTTTCACTGCATTGCTATTACTTCCTGT
AAGATGTAGTAAGATTCTGCAACACCAGCGAGAATTTCAAAGTCATAGGAATGCTTTTTGATCAGGCGTGCTCATTATTG
GCGGTGCAGTTGTGTTGTGCTGCAGTCATGTGCCGTACTGGAATCGGAATCGATTGCTGCCTTGGCAAAACAGGCAATCA
TATACATGGTCTGAGAGTGTTTTTCAGAATCTTCAGAATCAAAATACTGGCAGTTTGGCCTTGCCCAACAGGGTCAGCGG
TGACCTCCTCCCTCACACCCTACCGAATCGCCTATTAGTCAGATCGGTATCGACAGCGAAGACCGATTATGTATGTAATG
AAAATCCAATTGCATGAAGATTTATGTGCTGGTATGATTCGCCTATTTATCATCAAACGTCGATTATTTTCTTATAAGGT
AGTCCCTTGTTGAATCATCCGGAACAAAACCAAGCTCTAGAAGAGAGAGTGCACTGTGAATCTGCTTTACTATCGACGTG
TCTAGAACGTCCTCCATAAACTGGAATGGTTAAAATCATCCACTCTAGGAAATAGGTGGTTTAACACTTAAGCTTTTCAT
CATCCTAGCAAATCAGGTTTCTATCATTCATACCATAATGATAGAAATGCTACAAGCAACTTAATTAAGTTTAAACAAGA
ATCGATAAGAAAGCTCTAAGTGGGTATACTACCTCAGTACCAAAATACAAGACGTTTTTTACAAGACGTGTTTTGCAGTT
CAAATTACTTTATATCATCCT
>chr3A_1
CGACGTCGAGCAGGTACCGCTTGTCCCCCTCGGCGACGGTGATGGTGTCGCCGACCGTGACCGTGGAGTAGTTCTTCAG-
--GTTGTACTCGAGCAGCTCCTTGTGGTCCTTGGCGCCCAGGAAGTCGGTGGTGTGCGGCCGCAGCTTGATGGACGTGGC
CTTGGGGAGCGACGTGCTGGTCAGCAGCACGAGGTCGCCCTCCTCCAGCCCGAGCCGCGCCATGGCGTGGGCGGGCACGT
GCACGAACCCCTCCTCGCAGCCGAACTCGAGCACGCCGCAGTGGGAGGCCTCGAGGGTGGCGGCGTTCTGGACGCGGAAG
AGCATCGGGTACCCCAGCCCCACCGACAAGATCCGGTCCAGCGCCGACGCCGGCAGGATGACCCAGTTGCCGTCGTCGGC
GCCCGCGTTGCCGAGGAGGGCCATGGGGCGGCCCCGGAGGTACTGCGCTCAGCCGCGGCGCGACCGCTGCTGCCGGAGGT
ACGCCTGCCACGCCTCCT---------------------CCTCCTTGCTCTCCCACTGCATTGCCGATGATCCGGCCGCC
GCTGCCTCCATGAGAAGAGATCGAATCAACTCAAAA-------------------------------GAT----------
---------------------CGATGGATCAATCTGCGAGTCGAGCCGTGGGTTTGCGCCCGCTTTTATCCATG-GTTTC
GTGGGTGCTACGGTCGGTTCGGTCCGAGTAGAACCGGGGGCCGACTACCATACGGTCTAGTGTAGGTCGGTAAACCGGGC
CCGCGTGGCGGTGAGACGACCCAGCCGGAACCCGGGCCTTTCCATGACAAGTGGGCCCGGCCCGTCAGAGCCAAACCCGG
GCTTCG-------------------GTTGGGTCAAAGCCCGTGTCCGTCTCTGTTTCTCCTCGTGCTCCCCTCCTCTGTT
C-TCTCCGGTGCTCCTCCCGCGAGACGAGACGGCCGCCACTAAACCCTAACCCTAGATTGGATTACGG-GGGCTGGGAGA
GGGAGAGGGTCGGAGCGGCGGCGGCGGCGGCGGCGAGATGTCGGCGAAGAAGGGGCTCTCGAGCACGCTGCGGAACCTCA
AGGTGAGGAATCGAGCCCTCTGTCCTCCCGGCCGCTTCCTCTCGCCATGGCTTGGCCTCTTACGGGGGGTGTTTTCTCTT
GTCCGTGTGCGTGTGCGGCGGTGCAGTTTATGCAGCGGGCGGCGGTGGCGCAGAAGATTGAGGACAAGGCCGATGTCGAG
GTGGAGGAGGCGGCGGCCGAGGTGGTGATGACGCCGGCGGCCAACGGAGGAGGGGTTAGCTTGTCGGTCCAGGTCGCCAG
GAAGTGGTACGTATGTGGGTTGTTGAAATTCCCGGTTCTTCTTAGCTGCAGATGGTTCTTCCTGTGTTGGTGTGTCTTGG
TT-GGGTATGCTCGGGTTAGGGAAGTTGTTGTAGAGGATTTTAGATTTGTTGTTATGTTGTTATTAAGACTGTACGATAG
TGATGCAATTCTAGTAATATTTCTGCTAGCATAGTTACTGTCCCCTGCGCAAATGGAAATTGATGAAGATCGCACCATTT
TTGGATCAAG-GTTTGTTACAAAAGGGAACTCGCACAAACTCCTGTGAACACTAACTAACAGTTTCACTTAGGAAAATGC
CACATATTGGGGAGAAGTATGCCATATAGGTGAAATTCAAGTAATTTGTGTGCTATAGCTTATGCCATAGAAGTGAAATT
CCAGTAATTTGTGTGATATAGCTTAGTTGCTGACCCCTGCGAAGCAGGGAACCGATGAAGAATCACACCACTTTTGGTTC
AAGTATTTTTGGTACAAAAAGAAACTCATGCAAACTCCTGTGAGCGGTACCAGTTTTCCTTGGGCATCGCATATGGCGGA
AAG----------TATGACTAGAAATGTGCTTATGCAGCTGTACCTAGTAACTGTTTGGGAGAAGGAGACTGTCGGCATA
GTGTTACATTACATGCTTTTGTGTCTATCTTTTGAAGTTCAATCATACTTTGCAGCCTGGTCATAAATTAAAAACATGTT
AAACAAATTTATTACTTGTTC-----------------------------------------------------------
-----------------------TGTCAGAGGTTTTTCTCACCCTGTTTCAGCTTTAGATTT-ATTGCCTTTCCTATGCA
GCACAAAATCCATGAAGGGTTACTAGCTTTGATTTGTCACTGCAGACTAAGCAAAACTAGTTTC-T--TTTTTCAGTGTA
GTTGTCATGGAGGGTAATCCACATCCAGGAGCTGTAAAGGGTCGAATGTCATTCCAAAATTTCAATCCATCCATTGATGT
GAGTTCTGTAGCTTTTTGTCCTTCGGGCTTTTTATGTCCTTTAGATGTCTGTTCCCTTACACAAGCCTAGACCTGTAGAA
ACTAAATGACGAGGCAAGTGGTCACCCAACACAATCAGCTTCACCTAGTAATTCTCAACAAGACAGTGCAAATACCAGCA
GGTTAGCTACTACCATGGTTCTTTTTCTCTTCTCTGTTAAGTTACCTTGGAAATGCCGGCTGTCACAAGTTACTTTTTAG
CTAT-TCGCCAAGATTGATGCATTGCAAATGTGTGAAGTAATTAT---TTAGTTTCAGTTGCTTAATTTGGACCAATTTG
ATCGACAACATGTCAAGAAAACCTGTAGATTCCACTTTGTTGAGCTGGGCATGTCTATC-CTTGAAGTGCTCAAATACAA
GTTATATACTCAGAGGAACTGTATACTTTCGAGCTGTGTG------AATAAAGGACGATGGTATTTTACTATTATTTTTT
CTTTTAAGAAGTTATTATTGATAGAGCACATAAACAACTTTAGATTGGCATACATACTGGGTGATGTTTTTATTTATTTC
TGATGCAGTTCTTTTATGTTCAAACTATTGCTAAAAATTAGATTCAGTTTGATCTCTTGAGTCCTGC---TGTGCCATAC
ATAATTGATATCCTATTCACCAGAAGAACACTTGCATTTATACATATAGTATATGTCTGCATCAGCTATCTTTGGCATAT
GTAGTTTTGAGGCTTTTTGATGACTTAAGTGGGAAATGAAACTGCAGAGTGGATGATATATCAGCATCAAGATTTAGAAG
CTTCAATGTTGATAGTTCAGAAAGCATATCTCTGAATGAGTTGAAGAGAAAAGAGCCTGGGCTGGAGATGGAAACACCAC
CATCGCGTAAGCTGCCAAAGACGACTGGCCAGAACGTGGATGGCCAGCCGTCTTCGCAGAGCAATGGTCGTGGGTCTGGC
AAGTCGAACAAGCATGAAAAGCTTGACTTTAATCTTCTCAGAAAACGGAAATCAAAATGAGGCCCAGGTTAGCATTAGCC
AAGAG-AGCTCTGTGTACTCCATATGTCACCATTTGTACTCTGTATCTGATCAGCC-TTGTGCGTTGTTCACTGAATTAT
TTCTGTAGTAGCAGGTAGCCAGGTTAAACCTGCAGTGGTATATCTGTTATTAACTT------------------------
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>chr3A_1
CGACGTCCAGGAGGTACCGCCGGTCCCCCTCGGCGACGGCGATCGTGTCGCCGACCGTCACGCACGGCGTGTTCAGTCTG
ACGTTGAACTCGAGCAGCCGCTTGAGGTCCTTGGCTCCCAGAAAGTCCATGGTGTGCGGCCGCAGCTTGACGGACGTGGC
CTTGGGGAGCGACGTGCTTGTCATGAGCACCAGGTCGTCCTCCTCCAGCCCGAGCCGCACCATGGTGAGTGCGGGCACGT
ACACGAACCCCTCCTCGGCGCCGAACTCGAGCATGCCGCAGTTGGTGGCGTCGAGGGTGGCGGCGTTCTGGACCCGGAAC
ACGAGCGGGTACTCCACCAGCGCCGAGTTGATCCCGTCCAGCGCCGACGCCGGCATCACGACCCGGTTGCCGTCGTCCGC
TCCAGCCTTGCCGAGGAGGGCCATGGGGCGGCACCGGAGGTACTGCGCCCACCCGATGCGCGACCGCTTCTGCCGCAGGT
ACGCCTGCCACGCCTCCTCCGCCT--------------------------------------------------------
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>chr3A_1
CGACGTCCAGGAGGTACCGCCGGCCCCCCTCGGCGACGGCGATCGTGTCGCCGACCGTCACGCACGGCGTGTTCAGTCTG
ACGTTGAACTCGAGCAGCTGCTTGAGGTCCTTGGCTCCCAGAAAATCCATGGTGTGCGGCCGCAGCTTGACGGACGTGGC
CTTGGGGAGCGACGTGCTGGTCATGAGCACCAGGTCGTCCTCCTCCAGCCCGAGCCGCACCATGATGAGTGCGGGCACGT
ACACGAACCCCTCCTCGGCGCCGAACTCGAGCATGCCGCAGTTGGTGGCGTCGAGGGTGGCGGCGTTCTGGACCCGGAAC
ATGAGCGGGTAGTCCACCAGCGCCGAGCTGATCCCGTCCAGCGCCGACGCCGGCATCACGACCCGGTTGCCGTCGTCCGC
GCCCGCCTTGCCGAGAAGGGCCATGGGCCGGCACCGGAGGTACTGCGCCCACCCGATCCGCGACCGCTGCTGCCGCAGGT
ACGCCTGCCACGCCTCCTCCGCCT--------------------------------------------------------
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>chr3D_1
CGACGTCGAGGAGGTACCGCCTGCCCCCCTCGGCGACGGCGATCGTGTCGCCGACCGTCACGCACGGCGTGTTCAGTCTG
ACGTTGAACTCGAGCAGCTGCTTGAGGTCCTTGGCTCCCAGAAAATCCATGGTGTGCGGCCGCAGCTTGACGGAGGTGGC
CTTTGGGAGCGACGTGCTGGTCATGAGCACCAGGTCGTCCTCCTCCAGCCCGAGCCGCGCCATGGTGAGGGCGGGCACGT
ACACGAACCCCTCCTCGGCGCCGAACTCGAGCATGCCGCAGTTGGTGGCCTCGAGGGTGGCGGCGTTCTGGACCCGGAAC
ATGAGCGGGTACTCCACCAGCACCGAGTTGATCCGGTCCAGCGCCGACGCCGGCATCACGACCCGGTTGCCGTCGTCCGC
GCCAGCCTTGCCGAGGAGGGCCATGGGGCGGCACCGGAGGTACTGTGCCCACCCGATCCGCGACCGCTGCTGCCGCAGGT
ACGCCTGCCACGCCTCCTCCGCCT--------------------------------------------------------
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>chr3D_521
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-------------------------------------------------CTGCCACTGCATCGGCGATGATCCAGCCGCC
GCTGCCTCCATGAGAAGAGATCAAATCAAATCAAAAGATGGATCTGAAGTTTAGAACGAACTGGATCGAT----------
---------------------CGATGGATCAATCTGCGAGTGGAGCCGTGGGTTTGCGCCCGCTTTTATCTATG-GTTTC
GTGGGTGCTA---------CGGTCCGAGTAGAACCGGGGGCCGACTACCATACGGTCTAGTGTAGGTCGGTAAACCGGGC
CCGCGTGGCGGTGGGACGACCCAACCTAAACCCGGGCCTGTCCATGACAAGTGGGCCCGGCCCGTCAGAGCCAAACCCGG
GCTCCCGCACCCTTCCCCTCGTGGTGTTGGGTCAA-GCCCGTGTCCGTCTCTGTTTCTGCTCGTGCTCCCCTCCTC---T
GTTTTCCGGTGTTCCTCCCGCGAGACGAGACGGCCGCCTCTAAACCCTAACCCTAGATTGGATTACGGGGGGCTGGGAGA
GGGAGAGGGTCGGAGCGGCGGCGGCGGC------GAGATGTCGGCGAAGAAGGGGCTCTCGAGCACGCTGCGGAACCTCA
AGGTAAGGAATCGATCCCTCTGTCCTCCCGGCTGCTTCCTCTCGCCATGGCCTGGCCTCTCACGGGGT-TGTTTTCTCTT
CTCCGCGTGCGTGTGCGGTTGTGCAGTTTATGCAGCGGGCGGCGGTGGCGCAGAAGATTGAGGACAAGGCCGATGTGGAG
GTGGAGGAGCCGGCGGCCGAGGTGGTGATGACGCCGGCGGCCAACGGTGGAGGGGTCGGCTCGTCGGTCCAGGTCGCCAG
GAAGTGGTA----TGTGGGTTGTTGACTGGCCCGGTTCTTCTTAGCTGCAGAT-GTTCTTCCTGTGCTGCTGTATCATGG
TTGGGGTATGCTCGGGCTAGGGAAGTGGTG-----GGATTTTAGATT--------TGTTATTGTTAAGACTGTATGATAG
TGATCCAATTCTAGTAATATTTCTGCTAGCATAGTTACTGACCCCTGCGCAAATGGAAATTGATGAAGATTGCACCGCCT
TCTGATCGAATGTTTGTTACAAAAGGGAACTCACACAAACTCCTGTGAACATTAACCAACAGTTTCACTTAGGAAAATGC
CACATATTGGTGAAAAGC-------------------------------------------ATGCTGTAGAAGTGCAATT
CCAGTAATTCGTGTGCTATAGTTTAGGTCCTGACCCCTGCGAAGCCGGAAATTGATGATGAGTCGCACCACTTTTGGTTC
AAGTATTTGGTG--CAGAAAGAAACAAATGCATACTCCTGTGAACGGTACCAGTTTCCCCTAGGCAAATGCGCATTGCGC
ATATGGTGAAAGTTATGACTAGAAATGTGCTTATGCAGCTGCACCTAGTAACTGTTTGGGAGAGGGAGACTGTTGGCATA
GTGTTGCAT-----GCTTTTGTGTCTATCTTTTGAACTTCAATCATACTTTGCAGCCTGGTTGTAGATTAAAAACATGTT
AAACAAATTTATTACTCCCTCCGAACCATATTACTTGTCGCTGGTTTAGTAACTTTGTATTAAGCCAGCGACAAGTAATA
TGGATCGGAGGGAGTAGTTGTTTTGTCAGAGGGTTTTTTCATCCAGTTTCATCTTTAGATTTTACTGCCTTTCTTATGCA
GCACAATATCCATGAAGGATTACTAGCTTTGATTTGTCACTGCAGACTAAGCAAAACTAGTTTCTT--TTTTTCAGTGTA
GTTGTCATGGAGGGTAATCCGCTTCCAGGAGCTGTAAAGGGTCGAATGTCATTCCAAAATTTCAATCCATCCATTGATGT
GAGTTCTGTAGCTTTTTGTCCTTCAAGGTG-TTATGTCCTTTAGATGTATGTTCCCTCACACAAGCCTAGACCTGTAGAA
ACTAAATGACGAGGCAAGTGGTCGGCCAACACAATCAGCTTCACCTAGTAATTCTCAACAAGACAGTGCAAATACCAGCA
GGTTAGCTACTACCATGGCTCTTTTTCTCTTATCTGTTAAGTTACCATGGAAATGCCGTCTGTCACAAGTTTGATTTTAG
CTATATCGCCAGGATTGATGCATTGCAAATGTGTAAATTAATTAGTAGTTAGTTTCGGTTGCTGAATTTGGACCAATGTG
ATCAACAACATCTCGAGTAACCCTGTAGATTCCACTTTGTTGAGCTGGACATGTGTATCTCTTGAAGTGCTCAAATA--A
GTTATATGCTCAGAGGAACTGTATACTTTCAAGCTGTGTGACTGTAAATGAAGGTTGATGATATTGTACTATTATTTTTT
GTTTCAAGAAGTTAG---TGATAGAGGAAATAAACACCTTTAGATTGGCGCACATACTGGGTGATGTTTTTATTTATTTC
TGATGCAGTTCTTTTATGTTCAAACTATTGCTAAAAATTAGATTCAGTTTGATCTCTTCAGTCCTTCTAGTGTGCCATAC
ATAATTGATATCGTATTCACCAGAAGAACACTTGCATTTATACATA--GTATATGTGTGCATCAGCTATCTTTGGCCTAT
GTAGTTTTGAGGCTTTTTGATGACTTAAGTGGGAAATGAAACTGCAGAGTGGATGATATATCAGCATCAAGATTTAGAAG
CTTCAATGTTGATAGTTCAGAAAGCATATCTCTGAATGAGTTGAAGAGAAAAGAGCCTGAGCTGGAGATGGAAACACCAC
CATCGCGCAAGCTGCCAAAGACGACTGGCCAGAACGTGGATGGCCAGCCGTCTTCGCAGAGCAATGGTCGTGGGTCTGGC
AAGTCGAACAAGCATGAAAAGCTTGACTTTAACCTTCTCAGAAAACGGAAATCAAAATGAGGTCCAGGTTAGCATTAGCC
AAGACTAGCTCTGTGTACTCCATATGCCACCATTTGTACTCTGTATCTGATCAGCC-TTGCGCGTTGTTCACTGAATTAT
TTCTGTAGTAGCAAGTAGCCAGGTTAAACCTGCAGTGATATATCTGTTATTAACTTATTGAGAAG---------------
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>SNPs
------------------S---S---------------------------------------------------------
-------S------------S--S--------------------------------------------------------
----------------------------------------------------S---------------------------
----------------------S---------------------------S-----------------------------
---------------S----S-------S--S------S---------------------------------------SS
SSSSSS-SSSSSSSS-----------------------------------------------------------------
--------------S---------SSSSSSSSSSSSSSS-----------------------------------S---S-
---------------------S-----------S------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---------------------S-------------------S-------S---S-----
--------------------------------------------------------S-----------------------
-----------------------------------------------S--------------------------------
----S-----------------------S---SS-SS-SS------------------------------------SSS-
-----------------------------------------------------------------SS--------S----
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----------------------S-------------------------------------------S-------------
-------------S-------S----------------------------------------------------------
--------------------------------------------------S--S--------------------------
-------------------------------------------S------S-----------S------------S----
S--------------------------------S--------------------------------------------S-
S------------------------------------------------------S-----------------S-S----
------S-S-S-----S-S-----------------------S----------------------S---S------S---
------------------------------------------------------------------------S-------
-------S------------------------------------------------------------------------
------------------------------------S-------------------------------------------
-------------------------------------------------------------------S------------
-------------------------------------------------------S-------------S----------
S-----------------------S----------SSSS-----------------------------------------
-----S------------------------SS----------------S-------------------------------
-----------------S----------------------S----------S--------------SS------------
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-----------------S-------------------------------------SS---S-------------------
------S-----------------------------------------------SS------------------------
------S-------------------------------------------------------------------------
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S-------------------------------------------------------------------------------
-----------------------------------------------------S--S-----------------------
-----------S---------------------------------S------------S--------S------------
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------------------------------------S-------------------------------------------
-------------S---------S-S-------S------S---------------------------------------
-----------------------------S-----------------------------------S---------S----
---S-------S--------SSS-----S------S---S-----S----------S-------------S---------
--S--SS-----------------S-----S-----------------S--------S-SS----SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_917
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGGCTTTGGTTCGGTTGAGT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------
>reverse_2647
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TGCCAAGATTGATGCATTGCA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>forward_1441
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCGTGCTGCTGTATTTTGG
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_3452
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CGTGTACTCTTGTGTCGCCA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
