>input_sequence_36008
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-----------------------------------------------------AT-GGGCCTAAATGATAGCCCGGCCCG
TTTAATATTTCCGGTGTCCCACGGGCCCGATCCAGCCGCCTGCTTCGACGACTTCTCTTCTTCT------TCACAAGGAA
GAAAGGATACAGAGAGAGACAGAGAGAGGGCCAC-----CCACACCCCCATCCCCAGCCCCAGCCGAGCCGAGGTCTTCC
GCCGACGAGCGAAACCAA-GCCGCATCAAGCCCCCACGCGCACCGATGGACGCGACCGCGGCGGCGGCCGGAGGAGGAGA
CGGGACGCAGAGGACACTGTAAGCACCCTCCCGATTCCTCCGATCTGGTTTTCCCCCTTGCTTATCTGTCCGTTCCGGTG
CTCGCGTAGCCCGGCGGTGCGGGCGGATCCAGAGGCTCGACTACGGGGCGCCCGATCCGGAGGGTCGACGCCGGCGTCCC
TCCGCAGGGCGGATCTAGGGC-TGGAACAAGGGGGAGGGGAAACTAGGGTTTTGCCAGCGGCGACACGATTTAGAATGCG
ATGTGGGACAATGCGCTATC--------------------------------------CTTATGCATTGACAGTATGGAT
GAATTTCTTAGTGCGTTT---------------CTCTAGTTAGTCTCAACTCATGAG-----------------GAACCA
GCCAAACAGTTGCAAAAGCCTTTTACATAGTACAATTTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACACTACA
CTAGTGTCAAAAACACTCTTATATTATGGGACGGAGGGAGTATTTGTTAACTTGTTACCACAGCTTGTTGTCTGAATATT
TTACTTTGATACTCCCTCTGTTCACTAATATTAAATGTTTTGGATATTTCAATATGGACTACATACGGACTGAAATGAGT
GAACAAATGCACTAAAACACCTCTATATATCGGTTCAGAAAAAAGTTACAGTAGAACTTATAATTTGGAACGGAGGGAGT
AGAATGGATAATTTTTTTC-TGGTGTTAGTATAGAAGCTTCTCACCTATCTCAGCTTATGTTAACCAGCCCAACAGATAT
AATAGTCTTCTGTAATTGT----ACAAGATGGCCATAACAATTGTGTGCA--TGTTAATTGTTTTTC-TTT-TC-AAACA
ACCTTCGTTGTCCAAGTTGTCCCCATAGTGTGCAACTGCAA-CTTTTTTCATGGTGCAATTATGTCTTTCAGTAA-----
-ATTTGTATATGCACGTGATTAACTCTTGATGCCTTA--TTACATCATCAGGAATCCTTATGTGACTGGTAATTCGGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGACACTGGAGGTTAGTTTTCA-------CTTCTGCACACGTA
AATATTGC---TCCAGCGGTATGGAAGTC-ATTATATACTTTCCTG---TGCAGCCTCCTATGGGTCAACTTTGCGATAC
AAGAGTGTGGAGCGTATCAAGGAGGTTGGAAAGCATAGCCTTATTGGAGGGAGTGGGGAGTTCAGTGATTTCCAGGAGAT
TTTGCGGTATCTGGATGAATTAACGTAAGTTGCCTTTAATGGTGGTTAGCTCA---TGTTTTCCTTCTCTCTGCTATGTA
AAATCCATGTGACATCCTCATCTCCCTTCCTTTTCAGTTTGAATGATCATATGTGGGATGATGGCAACTCATTGGGCCCC
AAGGAAATCCATGCCTACCTGACAAGAGTAATGTACAACAGGCGCAATAAGTTTGACCCTCTATGGAACTCCCTGGTGCT
TGGTGGAGTGAAAAAGGGCCCAAAGGGCGATGAGAAGTATCTTGGCATGGTATATTATTCATTC-----AAAAGGATAGT
ACTACTGTTCTTTTTTACTTCTGCCGGTTTGTCAGCATTTTATCTTATGCCTAATTT--TTGGTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAAAACCACATTGCCACTGGATTTGGGAACCATATGGCAATCCCAATACTTCGTGGTGAATGG
CGCGAGGACATGACTTTTGAAGAAGCTGTTAAGCTGATTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGACCGGTCATC
CATCAACAAATTCCAGGTTACAACTTGTCATTCTTATTAGTGAACTCACTATCGCCTAGAAGAAAGTTTGGCAGATTACG
---GTCTGTAGCTACTGAATTGTTGTAACATTATGCT---------TTTGCACGACAGATTGCCAAGATCACAACCGAGG
GATCAACCATCTACCCGCCGTATGCCCTGAAGACCAACTGGGGGTTTGCCGCCTTTGAGAACCCATCCAAGGGTGCTGTA
GGAACATGGTAA--------------------------------------------------------------------
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>chr4B_1_TraesCS4B01G099100
ACAGGTTGTCCTTTACTACTTTCGGTGGTCAAAATGTAATTGCATAATGAGTGCCACAATAAACTAAAAAATTTATGATG
ATATATATAGAAAATAAATAATGTGCATGGTACAAGTCTGCAACCACCCAAACCAATTTTATACAGCACTAAGAGCATCT
CTAACCGATCCCCAATAATTTAGAGGAGCAAACAGCCAAGTATACAGCAGAATATA------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TTTTTAAAGGAAAACAAAAA
TATGTTTATGATATATGCCAAGAGACGTCGAGTGCTACTTAATTGAGAAGTCATCTGCCTCGATGCCTTATAGTAATTGC
TTATTATATCTGAGGATTCATTCTCATATCCTAAAATTGGTAAGGACTGTAACAGTTTGGAGGGCTTAGCGTCTCCAAA-
ACTAGAAACCTATTAAGCCCGGGCACTTAAAATCTCACAGATCGATCTCCTAAAAGTGAAATTAAAGACCCAGTAACCCA
AATTTGG--ACAAGGATCTCGGGAGTTAGTTGAAGAAGGCAGGATGTGGATATATGTATACCATGAAAAGGATTACGGTG
GTGCCAACCGGGACCTGGAAAGCCCGCACTCTGTCGAAGTCGACGAGATCGAAATAGAAGCCCCCGCTCCCAATCTGCGA
CCGCAAATCCTCATCCCTCGCCACCTGGAGGAAGAGACGAAGCTCAATTATCAGGATCGGAGCCAGCCCCCATGCTCTTG
CTCTGCACAAATGGCCA--------------------------------TAGGATCG---------GAGCATACCTTGAT
AGTCCGGTGATCCTGCGCCATGGCGGCGATGGGGAGAACTTCTGCCAGTCGTGGGGCTCCCGTAGTGCTCGTGGGCACTG
TTGGGGTTTTCGGCCGGCGCCGCGCGCTGCGGCCGCGGATTGTTGCCGCTGAAAAGGGAAACGTACCGAATTGTGTACGG
GAGAAGCAGCAGTACGCTCCTCCAGGGA-----------------AAAAAAGAGAGAGAGGGGGAGGTAAACGGTGCTAG
GCCTA----------------------------AATGAGATAGAGGGGTTCTAAT-GGGCCTAAATGATAGCCCGGCCCG
TTTAATATTTCCGGTGTCCCACGGGCCCGATCCAGCCGCCTGCTTCGACGACTTCTCTTCTTCT------TCACAAGGAA
GAAAGGATACAGAGAGAGACAGAGAGAGGGCCAC-----CCACACCCCCATCCCCAGCCCCAGCCGAGCCGAGGTCTTCC
GCCGACGAGCGAAACCAA-GCCGCATCAAGCCCCCACGCGCACCGATGGACGCGACCGCGGCGGCGGCCGGAGGAGGAGA
CGGGACGCAGAGGACACTGTAAGCACCCTCCCGATTCCTCCGATCTGGTTTTCCCCCTTGCTTATCTGTCCGTTCCGGTG
CTCGCGTAGCCCGGCGGTGCGGGCGGATCCAGAGGCTCGACTACGGGGCGCCCGATCCGGAGGGTCGACGCCGGCGTCCC
TCCGCAGGGCGGATCTAGGGC-TGGAACAAGGGGGAGGGGAAACTAGGGTTTTGCCAGCGGCGACACGATTTAGAATGCG
ATGTGGGACAATGCGCTATC--------------------------------------CTTATGCATTGACAGTATGGAT
GAATTTCTTAGTGCGTTT---------------CTCTAGTTAGTCTCAACTCATGAG-----------------GAACCA
GCCAAACAGTTGCAAAAGCCTTTTACATAGTACAATTTACTCCCTCCGTCCCATAATATAAGAGCGTTTTTGACACTACA
CTAGTGTCAAAAACACTCTTATATTATGGGACGGAGGGAGTATTTGTTAACTTGTTACCACAGCTTGTTGTCTGAATATT
TTACTTTGATACTCCCTCTGTTCACTAATATTAAATGTTTTGGATATTTCAATATGGACTACATACGGACTGAAATGAGT
GAACAAATGCACTAAAACACCTCTATATATCGGTTCAGAAAAAAGTTACAGTAGAACTTATAATTTGGAACGGAGGGAGT
AGAATGGATAATTTTTTTC-TGGTGTTAGTATAGAAGCTTCTCACCTATCTCAGCTTATGTTAACCAGCCCAACAGATAT
AATAGTCTTCTGTAATTGT----ACAAGATGGCCATAACAATTGTGTGCA--TGTTAATTGTTTTTC-TTT-TC-AAACA
ACCTTCGTTGTCCAAGTTGTCCCCATAGTGTGCAACTGCAA-CTTTTTTCATGGTGCAATTATGTCTTTCAGTAA-----
-ATTTGTATATGCACGTGATTAACTCTTGATGCCTTA--TTACATCATCAGGAATCCTTATGTGACTGGTAATTCGGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGACACTGGAGGTTAGTTTTCA-------CTTCTGCACACGTA
AATATTGC---TCCAGCGGTATGGAAGTC-ATTATATACTTTCCTG---TGCAGCCTCCTATGGGTCAACTTTGCGATAC
AAGAGTGTGGAGCGTATCAAGGAGGTTGGAAAGCATAGCCTTATTGGAGGGAGTGGGGAGTTCAGTGATTTCCAGGAGAT
TTTGCGGTATCTGGATGAATTAACGTAAGTTGCCTTTAATGGTGGTTAGCTCA---TGTTTTCCTTCTCTCTGCTATGTA
AAATCCATGTGACATCCTCATCTCCCTTCCTTTTCAGTTTGAATGATCATATGTGGGATGATGGCAACTCATTGGGCCCC
AAGGAAATCCATGCCTACCTGACAAGAGTAATGTACAACAGGCGCAATAAGTTTGACCCTCTATGGAACTCCCTGGTGCT
TGGTGGAGTGAAAAAGGGCCCAAAGGGCGATGAGAAGTATCTTGGCATGGTATATTATTCATTC-----AAAAGGATAGT
ACTACTGTTCTTTTTTACTTCTGCCGGTTTGTCAGCATTTTATCTTATGCCTAATTT--TTGGTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAAAACCACATTGCCACTGGATTTGGGAACCATATGGCAATCCCAATACTTCGTGGTGAATGG
CGCGAGGACATGACTTTTGAAGAAGCTGTTAAGCTGATTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGACCGGTCATC
CATCAACAAATTCCAGGTTACAACTTGTCATTCTTATTAGTGAACTCACTATCGCCTAGAAGAAAGTTTGGCAGATTACG
---GTCTGTAGCTACTGAATTGTTGTAACATTATGCT---------TTTGCACGACAGATTGCCAAGATCACAACCGAGG
GATCAACCATCTACCCGCCGTATGCCCTGAAGACCAACTGGGGGTTTGCCGCCTTTGAGAACCCATCCAAGGGTGCTGTA
GGAACATGGTAAG---------------GCCATGAGCTAGGAAACGAAGCAAACTGTGCTGCTGAAACAGTTTCAGCCC-
TTGTGAGCGTTTGATCTGAATACGACTGG-ACTCCACATTTGCTTTGTATGACATGTTTATAATTTGACTTAAAGTC--T
TGTGAACGTTTAAGGTAGATCATGTCTTGTATGATGATGCCTCTTCACTCTGGATCAATCTGGAGTGCTGGCCGAGGGTG
CAGTGCCTGCTCCCAAACCGCGCTCCATTTGACTTGTTTTGGCTGCCCTTTCATAGTCGAAACCTGTTCTTTTTTCTCTT
CAAAATAATTTGTTCACCC------------------------------------AAGATCACCATGGTGGCAGAAGTAA
TGATTCATGACGGCACATACAATCTGGAGCGAGAGTG--------------------------GATACACCATTGCCCCC
GTAATCATGATTATGTCTTTAGAAATTTGGAATATGCGCGGTGTTCTCTTCTGTGTAACATCTACCGTCAAATTGGATGA
TCCTTAGTCGACTGTCATGGAACACAGAAGAAAGAGATGCTGAAAATTAAAATCACAACAGAACTTGCTACTCGAAACGG
ATAGTGAGAATTTCAGAGAAGGCATGGACAGCACCACCCAGGGTTGTTTTCTGACACCACCCAGGGTTGTTGTTCCACTA
TTTTTCTTGTTCCAGGAGACAATAGAATGTACACAGAGAGAACTGTCTGGTCGTTGTTCAAAGGGGTTAGTATATATGCG
TTGATGTGAGCTTCTGCGATTGTACTACAAATGACTAACAACTAAGCGATTGTACTATGTTGAAAAAAAATTGTCATTGT
TCTCAACAAATGACTAACAACTAAGCGTTGGGTGTGAAAACGAGCAGTTTGCCAGCTAGGCTAGTCCATCCACCTCTAGC
TGCTGCCTACCCAAAAAGGTTAGGGTTTCTCTGCCTCCCTCCCGTTGGCGCCGCCGTCGGTCCGCCTCATCTTCGGTGGC
CATGGGGGCGGAGTGGATCCCGGTTCGTGCTAGTGGGAGGATTTTTTTAAAGT
>chr4A_1
ACAGGTTGTCCTTTACTACTTTCGGTGGTCAAACTGTAATTGCATAATGAGTACCACAATAAACTAAAAAATATATGATG
AC--ATATAGAAACTAAATAAATTGCACGGTACAAGTCTGCAGCCACCCAAACCTATTTTTATACTGAACTAAAGCAAGG
TGGAAATTTTTGGAACGGCTGCACTGTTGATTTCCTCAATTGACTTGCATTAATTATGAAATAACACTTCACACGAAAAT
GGACTGAATTGTTCAGCAGAGAGAATACAGCTCTGCACACTGAAAGTAGAGCACAAAACCAGAACCCGAAGTCGCTGAAA
TATTTTCAAGGCACCATATATGACACCAACACAAAAATACTATCTCGCGTAGCAGATTTTTTTTTAAAGGAAAACAAAA-
------------ATATGCCAAGGGACGTCAATTGCTACTTAATTGAGAAGTCATCTGCCTCGATGCCGTATAATTGC---
---TTATATCTGAGGATTCATTCTCATATCCTAAAATTGGTAAGACCTGTTACAGTTTGGAGGACTTAGCGTCTCCAAAC
ACTAGAAACCAGTAG-GTCCGGGCACTTAAAATCTCACAGATCGATCTCTGAAAAGTAAAATTAAGGACCCAGTAACCCA
ATTTGTACTACAAGGATGTCGGGAGTTGGTTGAAGAACGCAGGATGTGG----ATATATACCATGAAAAGGATTACGGTG
GTGTCAGCCGGGACCTGGAAAGCCCGCACTCTGTCGAAGTCGACGAGATCAAAATAGAAGCCCCCGCTCCCAATCTGCGA
CCGCAAATCTTCATCCCTCGCCACCTGGA---AGAGACGAAGCCCAATTATCAGGATCGGAGCCAACCCCCATGCTCTTG
CTCTGCACAGATGGCCACCCGGTTCGGTTTACCCGCGAAGTAAAGCTGCGGCCGGGAAGGGAGCAAGAGCATACCTTGAT
AGTTCGATGATCCTGCGCCT---------------------------GTCGTGGGGCTCCCGTAGTGCGCGTGGGCACTG
TTGGGGTTTTTGGCCGGCGCTGCGCGCTGCGGCCGCGGGTTGTTGCCGCTGAAAAGGGAAACGTACCGAATTGTGTTTCT
TTTTTGTTGATGAGAAAGCCCGAATTGTGTACGGGAGCCAAGAAAAAAAAATGA------GGGGAAGTAAACGGGGCTGG
GCCTA----------------------------GATGAGAGAGGGGGGCTCCAATGGGGCCTAACTGATAGCTCAGCCCG
TTTAATATTTCCGGT----CACGGGTCCGATCCAGCCGCCTGCTTCGAC---TTCTCTTCTCTTCACAAGTCACAAGGAA
GAAAGGATACAGGGAGAGAG-----------------GGCCACACCACCATCCCCAGCCGCAGCCGAGCCGAGGTTTTCC
TCCGACGAGCGAAACCAA-GCCGCATCAACCCCCCACGCGCACCAATGGACGCGACCGCGGCGGCGGCCGGAGGAGGAGA
TGGGACGCAGAGGACACTGTAAGCACTCTCCCGATTCCTCCGATCTGGATTTCCCCCTTGCTTGTCTGTCTGTTCCGGTG
CTCGCGTCGCCCGGCGGCGGGCCC-GATCCAGAGGCTCGACTACGGGGCGCCCGGTCCGGAGGGTCGACGCCGGCGCCCC
TCTGCTGGGCGGATCTAGGGGAAGGAACAAGGGGGAGAGGAAACTAGGGTTTTGCCAGCGGCGATACGATTTAGAATGCG
ATGTGGGACGATGCGTTATCCGTGAGAACCTGCTAGCGGAGCTTGCTCTGCGAAGCTTCTTATGCATTGACAGTATGGAT
GAATCTG----------------------------CTAGTTAGTCTCAACTCATGGAATATTCCAGCTCATGACGAACCA
GCCCAACAGTTACAAATGCCTTTTACATGCATTTATTTG-----------------------------------------
--------------------------------------------TGTGAACTTGTTATCACATCTTGTTGTCTGATTTTT
TTTTACTTTGA---------------------------------------------------------------------
-------------------------------------------------------------------------------T
AGAATGGATGCA---TTTTTTGGTGTTAGTACAGGAGCTTCTCATCTGTATCAGCTTATGTTAACCAGCCCAACAGATTA
-------TTCTGTAATTGT----ACAAGATGGTCATAACAATTGTGTGTGTGTGTTAATTGTTTTTC-TTTATC-AAAAT
ACATTCATTGGCCAAGTTGTCCCCTTAGTGTGCACCGGC-A-CTTTTTTCATGGTGCTGTTGTGTCTTTCAGTAA-----
-ATTTGTACATGCACGTGATTAACTCATGATGCCTTA--TTGCATCACCAGGAACCCTTATGTGACTGGTAACTCGGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGATACTGGAGGTTAGTTG----TCACTTCTTCTGCACAGGTA
AATATAGC---TCCGGCGGTATGGAGGTC-ATTATATACTTTCTTGTGCTGCAGCCTCCTATGGGTCAACTTTGCGATAC
AAGAGTGTGGAGCGTATCAAGGCGGTTGGAAAGCATAGCCTTATTGGAGGGAGTGGGGAGTTCAGTGATTTCCAGGAGAT
TTTGCGCTATCTGGATGAATTAACGTAAGTTGCCTTTAATGGTGGTTAGATCA---TGTTTTCCTTCTCTCTGCTATGTA
TAATCCATGTGACATCTTCATTCA-CTTCATTTTCAGTTTGAATGATCATATGTGGGATGATGGGAACTCATTGGGCCCC
AAGGAAATCCATGCCTACCTGACAAGAGTAATGTACAACAGGCGCAATAAGTTTGACCCTCTATGGAACTCCCTGGTGCT
TGGTGGAGTGAAAAAGGGCCCAAAGGGCGATGAGAAGTATCTTGGCATGGTATATTATTCATTC-----AAACAAACAG-
--TACTGTTCT-TCTTACTGCTGCCGGTTTGTCGGCATTTTGTCTTATGCCTATTTTTGTTGTTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAGAACCACATTGCCACTGGATTTGGGAACCATATGGCAATCCCAATACTTCGTGGTGAATGG
CGCGAGGACATGACTTTTGAAGAAGCCGTTAAGCTGATTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGACCGGTCATC
CATCAACAAATTCCAGGTTACAACTTGTTACTC---TTAGTGAACTCACTGTCGCCTAGAAGAAAGTTTGGCAGATTA--
-CAGTCTGCAGCTACTGAATTGTTGTAACATTATACT---------TTTGCATGACAGATTGCCAAGATCACGACCGAGG
GATCAACCATCTACCCGCCGTATGCTCTGAAGACCAACTGGGGGTTTGCCGCCTTTGAGAACCCGTCCAAGGGTGCTGTA
GGAACATGGTA-G---------------GCCATGAGCTTGGAAACGAAGCAAACTGTGCTGCTGAAACAGTTTCAGCCC-
TTGTGAGCGTTTGATCCGAATATGACTG-AAGTCCACATTTGCTCTGTATGACATGTTTATAATTTGACTTAAAAGTCTT
TGTGAACGTTTAAGGTTGATCTTGTCTTGTATGATGATGCCTCTTCACTCTAGGTCAATCTGGAGTG---GCCGAGGGTG
-----CCTGCTCACCGTGCTCCCTTC----GACTTGTTTTGGCTGCCCTTTCATAGTCGAAACCTGTTA-TTTTTCTCTT
TAAAATAATTTGTTCACGTCACTTGTCGGTCGTTGGCTTGTTGCATCGTTCACCAAAGATCACCATGGTGGCAGAAGTAA
TGATTCATGACGGCATCTACAAACTAGAGCAAGAACCAGGCTCCCTCGACAGTTGCAACAAAAGATACACCATTGCCTCC
CTAATCATGATTATCTCCTTGGAAATTTGGAACATGCGTGGTGTTCTCTTCTGAGTAACATCTACCGTCAAATTGGATCA
TCCTTAGCCGTCTGTCATGGAAAAC---AGAAAGGGATGCTGAAAATTGGAATCACAACAGAACTTGCTACTCAAAACGG
AGAGTGAGAATTTCAGAGAAGGCATGGACAT-----------------------CACCACCCAGGGTTGTTGTTCCACTA
TTTTTCTTCTTCCA------------------------------------------------------------------
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>chr4D_249
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------------ATATGCCAAGGGACGTCAATTGCTACTTAATTAAGAAGTCATCTGCCTCGATGCCATATAATTGC---
---TTATATCAGAGGATTCATTCTCATATCCTAAAATTGGTAAGACCTGTTACAGTTTGGAGGACTCAGCGTCTCCAAAC
ACTAGAAACCAGG-G-GCCCGGGCACTTATAATCTCACAGATCGATCTCTGAAAAGTAAAATTAAAGACCCAGTAACCCA
AATTTGG--ACAAGAATGTCGGGAGTTGGTTGAAAAAGGCAGGATGTGG----ATATATACCATGAAAAGGATCACGGTG
GTGTCAACCGGGACCTGGAAAGCCCGCACTCTGTCGAAGTCGACGAGATCAAAATAGAAGCCCCCGCTCCCAATCTGCGA
CCGCAAATCTTCATCCCTCGCCACCTGGAGGAAGAGACGAGGCCCAATTATTAGGATCAGAGCCAACCCCCATGCTCTTG
CTCTGCACAGATGGCCAACACCCATGCTCTTGCTGTGCACAGATGGCCATAGGATCG---------GAGCATACCTTGAT
AGTCCGGTGATCCTGCGCCATGGCGGCGATGGGGAGAACTTCTGCCAGTCGTGGGGCTCCCGTAGTGCTCGTGGGCACTG
TTGGGGTTTTCGGCCGGCGCCGCGCGCTGCGGCCGCGGATTGTTGCCGCTGAAAAGGGAAACGTACCGAATCGTGTACGG
GAGAAGCAGAAGTACCT---TCCAGGGG-----------------AAAAACAGA------GAGAGAGTAAACGGGGCTGG
GCCTAATTTTTTTGAGGGATCGGCCTGGGCCTAAATGAGAGAGAGGGGTTCCAAT-GGGCCTAAATGAGAGCCGGGCCCA
TTTAATATTTTCGGTGTCCCACGGGTCCGATCCAGCCGCCTGCTTCGAC---TTCTCTTCTTCT------TCACAAGGAA
GAAAGAAGACAGAGAGACAGAGAGAGAGAGAGAGAGAGGCCACACCACCATCCCCAGCCCCAGCCGAGCCGAGGTCTTCC
TCCGACGAGCGAAACCAAAGCCGCATCAACCCCTCTCGCGAATCGATGGACGCGAGCGCGGCGGCGGCCGGAGGAGGAGA
CGGGACGCAGAGGACACTGTAAGCACCCTCCCGATTCCTCCGATCTGGTTTCCCCCCTTGCTTGTCTGTCTGTTCCTGTG
CTCACGTCGCCCGGCGGTGCGGGCGGATCCAGAGGCTCGACTACGGGGCGCCCGGTCCGGAGGGTCGACGCCGGCCCCCC
ACCGCATGGCGGATCTAGGGGGTGGAACAAGGGTGAGGGGAAACTAGGGTTTTGCCAGCGGCGACACGATTTAGAATGCG
ATGTGGGACGATGCGTTATCCTTGAGAATCTGCTAGCGGAGCTTGCTCTGCGAAGCTTCTTATGCATTGACAGTATGGAT
GAATTTCTTGGTGTTGTTGTACAAGCCTGAAGCCTCTAGTTAGTCTCAACTCATGAG-----------------GAACCA
GCCCAACAGTTGCAAAAGCCTTTTACATAGTACAATTTA-----------------------------------------
------------------------------------------TTTGTTAACTTGTTACCACAGCTTGTTGTCTGAATATT
TTACTTTGATACTCCCTCTGTTCACTAATATAAGATGTTTTGGATATTTCAATATGGACTACATACGGACTGAAATGAGT
GAGCAAACACACTAAAACGTGTCTATATATCGATTCAGAAAAAAGTTACAGTAGAACTTATAATTCGGAACGGAGGGAGT
ATAATGGATAATTTTTTTTATTGTGTTAGTATAGAAGCTTCTCATCTGTCTCAGCTTATGTTAACCGGCCCAACAGATAT
AATAGTCATCTGTAATTGT----ACAAGATGGTCATAACAATTGTGTGCA--TGTTAATTGTTTTTTGTTT-TC-AAACA
ACCTTCGTTGTCCAAGTTGTCCCCATAGTGTGCAACTGC-AACTTTTTTCATGGTGCTATTGTGTCTTTCAGTAA-----
-ATTTGTATATGCACGTGATTAACTCTTGATGCCTTA--TTACATCATCAGGAATCCTTATGTGACTGGTAATTCGGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGACACTGGAGGTTAGTTTTCA-------CTTCTGCACAGGTA
AATGTTGC---TCCAGCGGTATGGAAGTC-ATTATATACTTTCCTG---TGCAGCCTCCTATGGGTCAACTTTGCGATAC
AAGAGTGTGGAGCGTATCAAGGAGGTTGGAAAGCATAGCCTTATTGGAGGGAGTGGGGAGTTCAGTGATTTCCAGGAGAT
TTTGCGGTATCTGGATGAATTAACGTAAGTTGCCTTTAATGGTGGTTAGCTCA---TGTTTTCCTTCTCTCTGCTATGTA
AAATCTATGTGACATCTTCATCTCCCTTCCTTTTCAGTTTGAATGATCATATGTGGGATGATGGCAACTCATTGGGCCCC
AAGGAAATCCATGCCTACCTCACAAGAGTAATGTACAACAGGCGCAATAAGTTTGACCCTCTATGGAACTCCCTGGTGCT
TGGTGGAGTGAAAAAGGGCCCAAAGGGCGATGAGAAGTATCTTGGCATGGTATATTATTCATTC-----AAAAGGATAGT
ACTACTGTTCT-TTTTACTGCTGCCGGTTTGTCAGCATTTTATCTTATGCCTAATTT--TTGGTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAGAACCACATTGCCACTGGATTTGGGAACCATATGGCAATCCCAATTCTTCGTGGTGAATGG
CGCGAGGACATGACTTTTGAAGAAGCTGTTAAGCTGATTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGACCGGTCATC
CATCAACAAATTCCAGGTTACAACTTGTCATTCTTATTAGTGAACTCACTATCGCCTAGAAGAAAGTTTGGCAGATTGCG
---GTCTGTAGCTACTCAATTGTTGTAACATTATGCT---------TTTGGACGACAGATTGCCAAGATCACGACCGAGG
GATCAACCATCTACCCGCCGTATGCCCTGAAGACCAACTGGGGGTTTGCTGCCTTTGAGAACCCATCCAAGGGTGCTGTA
GGAACATGGTAAG---------------GCCATGAGCTAGGAAACGAAGCAAACTGTGCTGCTGAAAGTGTTTCAGCCC-
TTGCGAGCGTTTGATCTGAATACGACTTG-ACTCCACATTTGCTCTGTATGACATGTTTATAATTTGACTTAAAGTC--T
TGTGAACGTTTAAGGTAGATCTTGTCTTATATGATGATGCCTCCTCACTCTGGATCAATCTGGAGTGCTGGCCAAGGGTA
-----CCTGCTCCCAAACGGCGCTCCATTTGACTTGTTTTGGCTGCCCTTTCATAGTCGAAACCTGTTCTTTTTTCTCTT
CAAAATAATTTGTTCACCC------------------------------------AAGATCACCATGGTGGCAGAAGTAA
TGATTCATGACGGCATATACAATCTGGAGCAAGAGTCAGCCCCCCTCCA------CAACAAAAGATGCATCATTGCCTCT
GTAATCATGATTATCTCCTTAGAAATTTGGAACATGCACGGCGTTCTCTTCTGTGTAACATATACCGTCAAATTG-----
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>chr5A_1989
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------CTTTTGTAATTTGTCCAAGAAGGTGCTTATAGCAATCTTGTGTG--TGTTATTTTTTC-----TT-TCCAAAAT
ACGTTCATTGCCCAGGCTTTCCTC-TAATGTCCAACTGC-AACTTCTTTCATGGTGCTATTGTTT---TCAATAAA--TT
TATTTGTATACGCACATGGTTAACTCTCGACGCTGTA--TTGCATCAACAGGAACCCCTATGTGACTGGTAACTCTGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGACACTGGAGGTTAGTTAGCTGTCACTTCTTCCGCACAGGCA
AATGTAGTTGTTCCTGTGATATGCGACCC-TTTATCTGATTTCTTG---TGCAGCCTCCTATGGGTCAACTCTGCGATAC
AAGAGCGTGGAGCGTATCAAGGAGGTTGGTAAGCATAGTCTTATTGGAGGGAGTGGGGAGTTTAGTGATTTCCAGGAGAT
TCTGCGCTATCTGGATGAACTGACGTAGGTTACCTTGTCGAATGGCTTTGCTCATGTGTGTTCTTTCTCTCTGCTGTGTG
AAATTGATGTGACATCCTCATCTCTGCTCCTTTTCAGTCTGAATGATCATATGTGGGATGATGGCAACTCATTGGGCCCC
AAGGAAATCCATGCATACCTGACAAGGGTGATGTACAACCGGCGCAATAAGTTTGACCCCCTGTGGAACTCCCTGGTGCT
TGGTGGAGTGAAGAAGGGCCCAAAGGGTGATGAGAAGTATCTTGGCATGGTATGTTATTATATTGGTTTGAAAGAAGAT-
--TGCTGTTCT-TTCTACTGCTACTGGTTTGTCATGACCTTATGTTGTGCCTAA-TT--TTGGTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAGAACCACATTGCCACTGGATTTGGGAACCACATGGCAATCCCAATACTTCGTGGTGAATGG
CGTGAGGACATGACCTTTGAAGAAGCTGTTAAGCTGATTGAGAAGTGCCTGCTGGTCTTGTTGTACCGTGACCGGTCATC
CATCAACAAATTCCAGGTTACAACTTGTCGTCTTAGTGAAGTCACTT-CTAATGCCTAGAAGAAATTTAGCCAAATTCCT
TCAGTATGTAGCTGCTGAACTGTTATAACATGGATGGTTTGTCTGGTTTGGTTGACAGATTGCCAAGATCACGACCGAGG
GATCGACCATCTACCCGCCGTATGCCCTGAAGACCAACTGGGGATTTGCCGCCTTTGAGAACCCGTCCAAGGGCGCTGTA
GGAACATGGTA-GACATATGCTGCTGCAGCCATGAGCTAGAAAACGTAGCATACTCTGCTGCTGAAGCAGTTTCGGCCC-
GTGTTAGTGTTTGATCCGAACATGACTGGAACTCGACATCTGCTTTGTGTGACATGC-TATAATTTGATTTCAAGTT--T
TATGAAC-------------------------------------------------------------------------
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>chr5D_2036
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-----------------------------------------------------------TGTTATTTTTTT-TCCAAAAT
ACCTTCAGTGCCCAGGCTTTCCTC-TAATGTGCAACTGC-AACTTCTTTCATGGTGCTATTGTTTCTTTCAATAAATTTT
TGTTTGTATGCGCACATGGTTAACTCTCGACGCTGTA--TTGCATCAACAGGAACCCCTATGTGACTGGTAACTCGGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGACACTGGAGGTTAGTTGGCTGTCACTCCTTCCGCACAGGCA
AATGTAGTTGTTCCTGTGATATGCGACCC-ATTATCTGATTTCTTG---TGCAGCCTCCTATGGGTCAACTCTGCGATAC
AAGAGTGTGGAGCGTATCAAGGAGGTTGGTAAGCATAGCCTTATTGGAGGGAGTGGGGAGTTCAGTGATTTCCAGGAGAT
TCTGCGCTATCTGGATGAACTGACGTAGGTTACCTTATCGAATGGCTTTGCTCATGTGTGTTCTTTCTCTCTGCTGTGTG
AAATCCATGTGACATCCTCATCTCTGCTCCTTTTCAGTCTGAATGATCATATGTGGGATGATGGGAACTCATTGGGCCCC
AAGGAAATCCACGCATACCTCACAAGAGTGATGTACAACCGGCGCAATAAGTTTGACCCTCTGTGGAACTCCCTGGTGCT
TGGTGGAGTGAAGAAGGGCCCAAAGGGCGATGAGAAGTATCTTGGCATGGTATATTATTGGTTTA--TTAAAAGAAGAA-
--TGCTGTTTT-TTGTACTGCTGCTGGTTTGTCATGATCTTATGTTGTGCCTAA-TT--TTGGTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAGAACCACATTGCCACTGGATTTGGGAACCACATGGCAATCCCAATACTTCGTGGTGAATGG
CGTGAGGACATGACCTTTGAAGAAGCCGTTAAGCTGATTGAGAAGTGCCTGCTGGTCTTGTTGTACCGTGACCGGTCATC
CATCAACAAATTCCAGGTTACAACTTGTTATCACAGTGAAGTCACTTACTAATGCCTAGAAGAAATTTAGCCAAATTCCT
TCAGTATGTAGCTGCTGAACTGTTATAACATGGATGGTTTGTCCGGTTTGGATGACAGATTGCCAAGATCACAACCGAGG
GATCGACCATCTACCCGCCGTACGCCCTGAAGACCAACTGGGGATTTGCCGCCTTCGAGAACCCATCCAAGGGTGCTGTA
GGAACATGGTA-GA-----------------------------------CATACTCTGCTGCTGAAGCAGTTTCAGCCC-
GTGTGAGTGTTTGATCCGAACATGACTGGAACTCGACATCTGCTTTGTGTGACATGC-TATAATTTGATTTCAAGTT--T
TATGAAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>chr5B_2044
--------------------------------------------------------------------------------
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--------------------------------------------------------------------TTT-TCCAAAGT
ACCTTCAGTGCCCAGGCTTTCCTC-TAATGTGCAACTGC-AACTTCTTTCGTAGTGCTATTGTTTCTTTCAATAAA--AT
TATTTCTATACGCACGTGGTTAACTCTCAGACACTGTATTTGCATCAACAGGAACCCCTATGTGACCGGTAACTCGGTGA
TTGCAATGAAATACAAGGATGGTGTGATCATGGCATGTGACACTGGAGGTTAGTTAGTTATCACTTCTTCCACACAGGCA
AATGTAGTTGTTCCTGTGATATGCGACCAAATTATCTGATTTCTTG---TGCAGCCTCCTATGGGTCAACTCTGCGATAC
AAGAGTGTGGAGCGTATCAAGGAGGTTGGTAAGCATAGTCTTATTGGAGGGAGTGGGGAGTTCAGTGATTTCCAGGAGAT
TCTGCGGTATCTGGATGAACTGACGTAGGTTACCTTATCGAATGGCTTTGCTCATGTGTGTTCTTTCTCTCTGCTGTGTG
AAATCCATGTGACATCCTCATCTCCATTCCTTTTCAGTCTGAATGATCATATGTGGGATGATGGGAACTCATTGGGCCCC
AAGGAAATCCATGCATACCTGACAAGAGTGATGTACAACCGGCGCAATAAGTTTGACCCTCTGTGGAACTCCCTGGTGCT
TGGTGGAGTGAAGAAGGGCCCAAAGGGCGATGAGAAGTATCTTGGCATGGTATATGATTGGTTTA--TTAAAAGAAGAA-
--TGCTGTTTT-TTGTACTGCTGCTGGTTTGTCATGATCTTATGTTGTGCCTAA-TT--TTGGTGTTCAGGTTAACATGA
TTGGTACACACTTTGAGGAGAACCACATTGCCACTGGATTTGGGAACCACATGGCAATCCCAATACTTCGTGGTGAGTGG
CGTGAGGACATGACCTTTGAAGAAGCTGTTAAGCTGATTGAGAAGTGCCTGCTGGTTTTGTTGTACCGTGACCGGTCATC
CATCAACAAGTTCCAGGTTACAACTTGTCATCT-----------------AATGCCTAGGAGAAATTTAGCCAAATTCCT
TCAGTATGTAGCTGCTGAACTGTTATAACATGGATGGTTTGTCTGGTTTGGATGACAGATTGCCAAGATCACGACCGAGG
GATCGACCATCTACCCGCCGTACGCCCTGAAGACCAACTGGGGATTTGCCGCCTTCGAGAACCCATCCAAGGGTGCTGTA
GGAACATGGTA-GA-----------------------------------CATACTCTGCTGCTGAAGCAGTTTCAGCCCC
GTGTGAGTGTTTGATCCGAACATGACTGGAACTCTACATCTGCTTTGTGTGACATGC-TATAATTTGATTTCAAGTT--T
TATGAACATTAAG-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>SNPs
---------------------------------S------------------S-------------------S-------
-SSS---------S-------SS----S--------------S-----------S-----SSSSSSS-SSS-S----SSS
SSS-SSSS-SSSS--SSSS-SSSSS-SSS-SSSSSS---S-SSSSS---SS-SS--------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
SSSSSSSSSSSS----------S------S-S-----------------------------------S----S-SSSSSS
SSS-----------------------------------------SS----S------------S----------------
----------SS-SSS---------------------------------SS------S----------------------
-----------------S---------S---------------------SSSS--S------------------------
---S----------------------------------------------S-----------------------------
---------S---------------------------------S---------------------S--------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-----SSS---------S-----------------------SSSSSSSSS-----S--------S---S-
----------------------------------------S----------S----------------------------
-------------------------S-----------------------SSS----------------------------
-------------------S--------S-SS-S------------S---------------------------------
S----------------------------S--------------------------------------------------
---------------------------------------------------------------S------S---------
-------S----------------------------------------------S---------------------S---
--------------------S-----------------------------------------------------------
---------S-----S----------------------------------------------------------------
---------S---SSS----------------------------------------------------------------
---S-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
-------------------------------S-S----------------------------------------------
--S----SS---------SSS-----------S--------------------------------S--------------
------------------S-------------------------S--S--------------------------------
--------------------------------S-----------------------------------------------
---------------------------------------S-----------------S---S------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------S------------------------------------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
SSSSS---------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S--------------S-----S----------------------------------------S--
--------------S--S--------------S---------------------------------------------S-
-------S--S-----------S--SSS------S-------------SS-----------------------S------
-S----------------------------SSSSSSSSSSSSSSSSSSSSSSSS--------------------------
--------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1130
--------------------------------------------------------------------------------
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----------------------------------------------------------------------TTGTGTACGG
GAGAAGCAGC----------------------------------------------------------------------
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-----------------------------------------------------
>reverse_3220
--------------------------------------------------------------------------------
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-------------------AAACCACATTGCCACTGGAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>forward_1392
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AGAGAGACAGAGAGAGGGCC------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------
>reverse_3782
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------ATGTCTTGTATGATGATGCCTCT------------------------------------
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-----------------------------------------------------
