>input_sequence_35989
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------------------------------------------------------------------ATGGCTCCCCTCTT
CGCCTCCTGCCACGCTTCCCACGCGTCCCTCCTACTCCTCTCCCCCAGCCCCGCCGCCGCCGCGCGTCTCCGCGTCGGTG
GCCTCCGAGTCAGGCGGCCGCGCCGCCTCCGCCTCCCCGTACGCACCGCCGCAGGAGGCAGCCCACTCGACGCCGAGATC
CCCGACCCTACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCCGCTTCCGCGCCGGGTAACTCGCGCCCTGGCGTCAC
CGATGAGTGGGGCGAGCCGGGGGTGGCCGAGCCTGAGCAGCCCTCCGGCGCCGACACCCCTACCAACGACGACGAGTGGG
GCGGGGAGCCCACGCCGACGCCGCCCAAGGCGAAGGAGGCTCCGGTTACGAAGGAGGACGAGGGGAGGGAGGAGCTGAAG
CGGTGCTTGGTGGACACGGTTTACGGCTCCGGCCTGGGCCTCAAGGCGTCCTCGGAGGTCAGGGGGGAGGTCGTGGAGCT
CGTGGCCCAGCTCGAGGCTGCCAATCCCACGTCCGCGCCCGTCCAGGCGCCAGAGCTCGACGGAAACTGGATACTCCTGT
GAGCCCTCCCACTTCTTGCTCTCAATCAGTACTTGCTAGTACTCACTACTTCGATCGTCAG-------------TGGAAT
GCTTTGTTTGAATTTTAGCCACT--GAATGATTGCGTGCTGTTGCCGTTGTTCTTCTGACCAAAGGGTGTTCTAAGTTGA
GGGCTCCTTTGGTTAATAGGATAGGAATGTTATAGGAATAGGAAAATCATAGGAAGCGAGAT--ACATGTATCCCAATTC
ATATAGGGAAAGAGATGTCATTTGAAGCATAGGATAGAAATTTTTCCATTGAGTCTAGGATAATGTCACTTTTCTTTGAA
ACGTGAAGGATTGGTTCCTATCCTACATACGAATGAATCCATTCCAACAAAACAAAGAGCTCCAAAGGAATTTTTC-CTT
TGAAAACCCTATCTTATACAATTCCTACAGAAGTCCTATAAGCCAAAGGAGGCCGAACTGTGTAAGCAGTCAACTTCTTA
TAATGTTGTTGCTCTGCCAAAGCAGACGACCAATTTCCCCCCTCTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AGAATTCTCATTAGCACTGAGGGG
GTCCAGTCAGTTACTTGT------ACCTACTTAATTGTGCATGCTCGTTGACTTTCAGGTATACAGCATATTCTGAGCTT
CTACCGATTCTGCTTGCCGGGGCAACACCATTCACCAGAGTTGATAAGATATCCCAAGAAATTGACTCGAGAATCATGAC
GATAATTAATGCTTCAACTATTTCGACTCCATTTGCTTCGTTTTCATTCAGCGCAACTGCTTCTTTTGAAGTCCAAACTC
CATCAAGGATAGAGGTATAGACCTGCTTCTCGTCAATGGTATGCTAGTCTCAGTTTATGCTGCATTGGTTATTTCAGCTT
TCCAGACATGTCATGTGCAACAGTTAATTTGCTTCTTCAATTACAAATAGAACATTTTGTATCATTA--TCATTTCGCTA
GTTACATTTGCTTCTCATCAATGTTATTTTAAAACACTTTGTATTATGAAATCCAGATAGTGTGTAGCCCCCTTCGTCAA
ACCATTTCGCTAGTTACATCTACTTGCTATTTTTAAGAAATATGGAATGCAAATTAGCAAATTAGGGAGAGACCCCTTTG
TGTTGTGCTAGACTAAGATATATAATCTAGCATGGC---------------------TTCAACAGACGCATTTGATACCG
GTATTGCCAC--ACCTGTCATTCTCCT------------------------A--------GCAAATCTCTCATACCAAAT
ATTTGAGGTGCACATCATGGTTATTAAAAGATTTCTTGGATGTTTCATCAGTTAAAAGAATACAAGTTGCCCTTTACCAT
GTATGTAAGCGGTCCTTGATAACATAGATATGCCAAACTGACACATTACTTGTTCTCATGAAGGTCCAATTCAAAGAGGG
GAGCTTCCAGCCTCCTGAGATATCATCATCGGTAAATCTACCTGAACAGATCGCCATATTCGGGCAGAAGTTCAGCCTGG
GGACTGTTAAGGAGCTGCTGGAGCCTTTGCAGCGAGCATTTGCTAGCATTGCAGGGTCCATCTCTGGGCAGCCACCCCTC
AAGGTACCGATTCCTGGGGACAACAAGGCCAAGTCGTGGCTTTTGACAACCTACCTGGACAAAGACTTGAGGATTTCAAA
AGGCGATGGAGGCGGCGTGTTTATTCTTGCCAAAGAGGGGAGCCCTTTACTAGATTAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G197400
GGCCCCACCGAGGCTCTTCTCTGGTACTTATTTCTTCCAGTATTTTTTATATATTCCAAAATTATTCTTCGTAAATTTTC
AGGTCATTTGGAGCTCCGGAGAATATCTGTTGTAGCTTTTT-CAGCCTCAGAATTCCAGCTGCCAGCAATGTCCCTCTTT
CGGTGTATCTTGCATTTTAAGAGAGAGAAAGTATTAGAATTGCAGCATAAAGTGAAATATAGATTTAAAACACTATAAAT
AATAATAGCAAACACGAT-CAAAATGGATGTATCACAATCCGCTGCACGACATGGCTCTGACAGAGGCCACGTGCCACCC
GTCATGGACACACGCCGACTGTAGCGATCACGCGCCTTCGGTCCACCCGTCATCGACCCTCTAACCGGTTCTCCCGCGAA
TGAGCCGTCTGGGCAAATCTTACGGCTCGCCTCGCCCCCGAGAGCCTCCCGCCGCAAGCCACACGGCAACAGACAACTGG
GAAGCTCTCTTCGCCCAACTGTAGCGATTGCGCGTCCTCGGTCCACTCATCATGGACGCACACCGACTGTACCGATTCGT
ACGCCAAGGGTCCACCCGTCATTCAGCCGTCCGGGTTGATCGGACGGCTCGCCTCGCCCC-AAGAGCCTCATGCCGCAAG
CCAACCGGCAATGGACGGCTAGGAGGTTCTCTTCGCCCTCGACGAGCCTAGGAAGGCGAATACTCCACCATCCTTTGCCC
AGTCCCGAGAGCCTTCTCCCCAAGCCAACGGGCAATAGACGGTTAGGAGGCTTTCTTCGCCCTCGATGAGCCTAGAAAGG
CGGATATCACGCCATTCTTTATACAGGAGTT-----------------------CGTATTCCAGGGAGAAAAAACCAAAT
AGAAAAACGGCTCGATTTTTAAGGGTTTTCCTGCGGCGATTTCGTAAATGAAAGAAAATCGCTGCTTGGGCTCTCCCCTC
CCCGCCCGCCCACACAAGTGACTAGAGGCCAACAGAAGAGGAGTGGAATCATTCATTCATTCATCCATGGCTCCCCTCTT
CGCCTCCTGCCACGCTTCCCACGCGTCCCTCCTACTCCTCTCCCCCAGCCCCGCCGCCGCCGCGCGTCTCCGCGTCGGTG
GCCTCCGAGTCAGGCGGCCGCGCCGCCTCCGCCTCCCCGTACGCACCGCCGCAGGAGGCAGCCCACTCGACGCCGAGATC
CCCGACCCTACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCCGCTTCCGCGCCGGGTAACTCGCGCCCTGGCGTCAC
CGATGAGTGGGGCGAGCCGGGGGTGGCCGAGCCTGAGCAGCCCTCCGGCGCCGACACCCCTACCAACGACGACGAGTGGG
GCGGGGAGCCCACGCCGACGCCGCCCAAGGCGAAGGAGGCTCCGGTTACGAAGGAGGACGAGGGGAGGGAGGAGCTGAAG
CGGTGCTTGGTGGACACGGTTTACGGCTCCGGCCTGGGCCTCAAGGCGTCCTCGGAGGTCAGGGGGGAGGTCGTGGAGCT
CGTGGCCCAGCTCGAGGCTGCCAATCCCACGTCCGCGCCCGTCCAGGCGCCAGAGCTCGACGGAAACTGGATACTCCTGT
GAGCCCTCCCACTTCTTGCTCTCAATCAGTACTTGCTAGTACTCACTACTTCGATCGTCAG-------------TGGAAT
GCTTTGTTTGAATTTTAGCCACT--GAATGATTGCGTGCTGTTGCCGTTGTTCTTCTGACCAAAGGGTGTTCTAAGTTGA
GGGCTCCTTTGGTTAATAGGATAGGAATGTTATAGGAATAGGAAAATCATAGGAAGCGAGAT--ACATGTATCCCAATTC
ATATAGGGAAAGAGATGTCATTTGAAGCATAGGATAGAAATTTTTCCATTGAGTCTAGGATAATGTCACTTTTCTTTGAA
ACGTGAAGGATTGGTTCCTATCCTACATACGAATGAATCCATTCCAACAAAACAAAGAGCTCCAAAGGAATTTTTC-CTT
TGAAAACCCTATCTTATACAATTCCTACAGAAGTCCTATAAGCCAAAGGAGGCCGAACTGTGTAAGCAGTCAACTTCTTA
TAATGTTGTTGCTCTGCCAAAGCAGACGACCAATTTCCCCCCTCTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AGAATTCTCATTAGCACTGAGGGG
GTCCAGTCAGTTACTTGT------ACCTACTTAATTGTGCATGCTCGTTGACTTTCAGGTATACAGCATATTCTGAGCTT
CTACCGATTCTGCTTGCCGGGGCAACACCATTCACCAGAGTTGATAAGATATCCCAAGAAATTGACTCGAGAATCATGAC
GATAATTAATGCTTCAACTATTTCGACTCCATTTGCTTCGTTTTCATTCAGCGCAACTGCTTCTTTTGAAGTCCAAACTC
CATCAAGGATAGAGGTATAGACCTGCTTCTCGTCAATGGTATGCTAGTCTCAGTTTATGCTGCATTGGTTATTTCAGCTT
TCCAGACATGTCATGTGCAACAGTTAATTTGCTTCTTCAATTACAAATAGAACATTTTGTATCATTA--TCATTTCGCTA
GTTACATTTGCTTCTCATCAATGTTATTTTAAAACACTTTGTATTATGAAATCCAGATAGTGTGTAGCCCCCTTCGTCAA
ACCATTTCGCTAGTTACATCTACTTGCTATTTTTAAGAAATATGGAATGCAAATTAGCAAATTAGGGAGAGACCCCTTTG
TGTTGTGCTAGACTAAGATATATAATCTAGCATGGC---------------------TTCAACAGACGCATTTGATACCG
GTATTGCCAC--ACCTGTCATTCTCCT------------------------A--------GCAAATCTCTCATACCAAAT
ATTTGAGGTGCACATCATGGTTATTAAAAGATTTCTTGGATGTTTCATCAGTTAAAAGAATACAAGTTGCCCTTTACCAT
GTATGTAAGCGGTCCTTGATAACATAGATATGCCAAACTGACACATTACTTGTTCTCATGAAGGTCCAATTCAAAGAGGG
GAGCTTCCAGCCTCCTGAGATATCATCATCGGTAAATCTACCTGAACAGATCGCCATATTCGGGCAGAAGTTCAGCCTGG
GGACTGTTAAGGAGCTGCTGGAGCCTTTGCAGCGAGCATTTGCTAGCATTGCAGGGTCCATCTCTGGGCAGCCACCCCTC
AAGGTACCGATTCCTGGGGACAACAAGGCCAAGTCGTGGCTTTTGACAACCTACCTGGACAAAGACTTGAGGATTTCAAA
AGGCGATGGAGGCGGCGTGTTTATTCTTGCCAAAGAGGGGAGCCCTTTACTAGATTAACTGTACATGTGTAATAGGTGTC
ATTATTCATATCTGCAAGGTTGAAAACCACAGCTACAAGCCTACAACGGGGCATTCTTCTCCCTCTTTGATACACAATTT
TCTGGTGGTTTTCTAGAGTCTGGCAGAATCAACTAAATATTGTCAGTATGCAGTCTCCATACACTTTTTTCTCCCTGGTA
AC----TAGTGTACATCTTTTGTATTATTAAAAAGGAATGTGCACATTACTTTATCATAAGAGTATTTTCAGCTCCGCAG
CTCAGGCAACTAAACCAAAATTACCTGAGAACCGTGACATGGAAGCAAAATCCTGAGCACCATGACATGGATTGCATGCC
AGAT---TCTGGATTCAATTATTGCTTCTGAGTCCGGGTTCAAACAGGATACCCTCTGATCCTCTTTAGTTCAATCAAAC
TAAATTTTCAGAAGACATGATTTTTTTTAATTTAGTTCATTTGATTTAACTAAGGAATATGGGAGGGTACCTGAGGTTCA
CAAATTTGCATCGCTAGATACATTTCATAC-------------------------------------------------A
AAATGCAAGGGAATCAAACTCAAGTGATCAACTGTTCCTTCAGTACGAGAGCTTGCTTAAGGTACATCTACATTAACAAC
TGAGACCTGTCACGCTTCAAATACAGAACTGGGAAAATGGCAGTACATCTACATTAACTGACACCTGTCATGCTTCAAAT
GCAGAACTGAGAATATGGCAGCAAGACAACGCTTCTCAGCAAATAAGATGTGTATCAGGCAGATATAACCATCTCCTAGA
GAACATTCTAAAAAATA-AGAAGCCTGTAATCTCCAACTTTTCTCTCTAGTAGACTACATAATTACAGAGCAGAGGCATC
TCCCTGTG-AAAAAACTGTGGACGAAAATGGCGTCGCCGTCGGAACAACAATCTTGCCTATCTATTAAAAAGAAGTGAAT
TAGCGCCAGCAGATTTAGTAATGTGCCAGGAAAAATTGGTACTGTTGTTATGGTACAACAATTCTAAGTCGCAAGT-
>chr1B_16
---------------CTTCTCTGGTACTTATTTCTTCCAATATTTTCTATATATTCCAAAATAATTCTTCGTAAATTTTC
AGCTCATTTGGAGCTCCGGAAAATATCTGTTGTAGCTTTTTTCAGGCTCGGAATTCCAGCTGTCGGCAATGTCCCTCTTT
CGGTGTATCTTGCATTTTAAGAGAGAAAAATTATTAGAATTGCATCATAAAGTGAAATACATATTTACAACATTATAAAC
AATAATAGGAAACACGATGCAAAACAGATGTATCACAATCCGCTGCACGACATGGCTCTGACAGAGGCCACGTGCCACCC
GTCATGGATACGCGCCGACTGTAGCGATCACGCGCCTTCGGTCCACCTGTCATCGACCTTATAACCGGTTCGCCCGGGGA
CGAGCCGTCTGGGCAGATCGTACGACTCCCCTCGCTCCCGAGAGCCTCCCGCCGCAAGCCACACGACAACAGACAACTGG
GAAGCTCTCTTCACCGAACTGTAGCGATTGCGCGTTCTCGGTCCACTCATCATGGACGCGCGCCGACTGTACCAATTCGT
ACGCCAAGGGTCCACCCGTCATTGAGTTGTCC-GGTTGATTGGACGGCTCGCCTCGCCCCCAAGAGCCTCCTGTCGCAAG
CCAACCGGCAATGGACGGCTAGGAGGCTCTCTTCCCCCTCGACGAGCCTAGGAAGGCGAATACTCCACCATCCTTTGCCC
CGCCCCGAGAGCCTTCTCCCCAAGCCAACGGGCAACAGACGGCTAGGAGGCACTCTTCGCCCTCGATGAGCCTAGAAAGG
TGGATACCACGCCGTTCTTTATATAGGAGTAATATATGATACGCACACTACGTGCGAATTTCAGGGAGAAAAAACCAAAT
AGAAAAACAGCTCGATTTTTAAGGGTTTTCCTGCGGTGATTTCGTAAAAGAAAGAAAATCGCTGCTTGGGCTCTCCCCTC
CCCGCCCGCCCACACAAGTGACTAGAGGCCAACAGAAGAGGAGTGGAATCATTCATTCATTCATCCATGGCTCCCCTCTT
CGCCTCCTGCCACGCTTCCCACGCGTCCCTCCTACTCCTCTCCCCCAACCCCGCCGCCGCCGCACGTCTCCGCGTCGGTG
GCCTCCGAGTCAGGCGGCCGCGCCGCCTCCGCCTCCCCGTACGAACCGCCGCGGGAGGCAGCCCACTCGATGCCGAGATC
CCCGACCCTACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCCGCTTCCGCGCCGGGTAACTCGCGCCCTGGCGTCAC
CGATGAGTGGGGCGAGCCGGGGGTGGCCGAGCCTGAGCAGCCCTCCGGCGCCGACACCCCTACCAACGACGACGAGTGGG
GCGGGGAGCCCACGCCGACGCCGCCCAAGGCGAAGGAGGCTCCGGTTACGAAGGAGAACGAGGGGAGGGAGGAGCTGAAG
CGGTGCTTGGTGGACACGGTGTACGGCTCCGGCCTGGGCCTTAAGACGTCCTCGGAGGTCAGGGGGGAGGTCGTGGAGCT
CGTGGCCCAGCTCGAGGCTTCCAATCCCACGCCCGCGCCCGTCCAGGCGCCAGAGCTCGACGGAAACTGGATACTCCTGT
GAGCCTTCCCACTTCTTGCTCTCAATCAATACTTGCTAGTACTCACTACTTCGATCGTCAGTTCGATACGTCAGTGGAAT
GCTTTATTTGAATTTTAGCCACTCAGAATGATTGCGTGCTGTTGCCGTTGTTCTTCTGACCAAAGGGTGTTCTAAGTTGA
GGGCTCCTTTGGTTAATAGGATAGGAATGTCATAGGAATAGGAAAATCATAGGAAGTGAGATAGACATGTATCCCAATTC
ATATAGGGAAAGAGATGTCATTTGAAGCATAGG-TAGAAAATTTTCCATTGAGTCTAGGATAATGTCACTTTTCTTTGAA
ATGTGAAGGATTGGTTCCTATCCTGCATAGGAATGAATCCATTCCTGCAAACCAAAGAGCTCCAAAGGATTTTTTTTCTT
TAAAAACCCTATCCTATACGATTCCTACAAAAATCCTATAAGCCAAAGGAGGCCAAACTGTTTAAGCAGTCAACTTCTTA
TAATGCTCTTGCTCTGCCAAAGCAGACGACCAATTTCCCCCCTCTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AGAATTCTCATTAGCACTGAGGGG
GTCCAGTCAGTTACTTGTACTTGTACCTACTTAATTGTGCATGGTCGTCAACTTTCAGGTATACAGCATATTCTGAGCTT
CTACCGATTCTGCTTGCCGGGGCAACACCATTCACCAGAGTTGATAAGATATCCCAAGAAATTGACTCGAGAAGCATGAC
GATAATTAATGCTTCAACTATTTCGACTCCATTTGCTTCGTTTTCATTTAGCGCAACTGCTTCTTTTGAAGTCCAAACTC
CATCAAGGATAGAGGTACAGACCTGCTTCTCGTCAATTTTATGCTAGTCTCAGTTTATACTGCATTGGTTATTTCAGCTT
TCCAGACATGTCATGTGGAACAGTTAATTTGCTTCTTCAATTACAAATAGAACATTTTGTATCATTAAATCATTTCGCTA
GTTACATTTGCTTCTCATCAATGTTATTTTAAAACACTTTGTATTATGAAATCCAGATAGTCTGTAGCC-CCTTCGTCAA
ACCATTTCGCTAGTTACATCTACTTGCTATTTTTAAGAAATATGGGATGCAAATTAGCAAATTAGGGAGAGACCCCTTTG
TGTTGCGCTAGACTGAGATATATAATCTAGCATGGCTGCAAGCCTTCAACTCAAGCATTCAACAGACGCATTTGATACCA
GTATTGCCGCCTACCTGTCATTCTCCTAGTTACGGTGTACATAGGATGATAACTTGATAAGCAAATCTCTTGTACCAAAT
GTTTGAGGTGCACATCATGGTTACTAAAAGA---CTTGGATGTTTCATCAGTTACAAGAATACAAGTTGCCCTTTACCAT
GTATGTAAGCCGTCCTTGATAACATAGATATGCCAAACTGACACATTACTTGTTCTCATGAAGGTCCAATTCAAAGAGGG
GAGCTTCCAGCCTCCTGAGATATCATCATCAGTAAATCTACCTGAACAGATCGCCATATTCGGGCAGAAGTTCAGCCTGG
GGCCTGTTAAGGAGCTGCTGGAGCCTTTGCAGCGAGCATTTGCTAGCATTGCAGGGTCCATATCTGGGCAGCCACCCCTC
AAGGTACCGATTCCCGGAGACAACAAGGCCAAGTCGTGGCTTTTGACAACCTACCTGGACAAAGACTTGAGGATTTCAAA
AGGCGATGGAGGTGGCGTGTTTATTCTTGCCAAAGAGGGGAGCCCTTTACTAGATTAACTGTACATGTGTAATAGGTGTC
ATTATTCATATCTGCAAGGTTGAAAACCACAGCTGCAAGCCTACAACGGAGCATTCTTCTCCCTCTTTGATACACAATTT
TCTGGTGGTTTT---GAGTCTGGCAGAATCAACTAAATATTGTCGGTATGGAGTCTCCATACGCTTTCTGCTCCTTGGTA
ACTACGTAGTGTACATTTTTTGTGTTATTAAAAAGGAATGTGCACGATACTTTATCGTAAGAGTATTTTCTGCTCCCTAG
CTCAGCCAACTAAACCAAAATTA----------------------------CCTGAGCACCATGACATGGATTGCATGCC
AGATAACTCTGGATTCAGTTATTGCTTCTGAGTCTGGGTTCAAACAGGATACCCTCTGATCCTCTTTAGTTCAATCAAAC
TGAATTTTCAGAAGACATGATTTTTTAAACTTTAGTTCATTTGA-TTAACTAAGGAATATGGGAGGGTACCTGAGGTTCA
CAAATTTGCATCGCTAGATATATTTCACATAAATCTGGACTGGAGGCTGTGGCCTGCTTGGAATCAGAATTTTA-TACAA
AAATGCAAGGGAATCAAACTAAAGCGATCAACTGTTCCTTCCGTATGAGAGCTTGCTTAAGGTACATCTACATTAACAAC
TGAGACCTGTCACGCTTCAAATACAGAACTGGGAAAATGGCAGCACATCTACATTAACTGACACCTGTCAGGCTTCAAAT
GCAGAACTGGGAATATGGCAGCAACACAACGCTTCTCAGCAAATAAGATGTGTATCAGGCAGATATAACCATCTCCTAGA
GAACATTCTAAAAAAAACAGAAGCCTGTAATCTCCACCTTTTCTCTCTAGTAGACAACATAATTACA-----GAGGCATT
TCCCTGTGAAAAAAACTGTGGACGAAAATGGCGTCGCCTT----------------------------------------
--------------------------------------GTACTGTTGTTATGGTACAACAATTCTAAGTCGCAAGT-
>chr1A_331
CGCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------GACTGTAGCGATCACGCGCCTTCGGTCCACCCGTCATCGACCTTCTAGCCGGTTTGCCCGGGGA
CGAGCCGTCCGGGCAGATCGTACAGCACACCTCGCCACCGAGAGCCTCCCGCCGCAAGCCACCCGGCAACAGACAGATGG
GAAGCTCTCTTCGCCCAACTGCAGCGATTGCGCATCCTCGGGCCACTCATGATGGACGCGCACCGACTATAGCGATTCGT
ACGCCAAGGATCCACCAGTCATTGAGCCGTCCTGGTTGATCGGACGGCTCGCCTCGCCCCCGAGAGTCTCCTGCCGCAAG
CCAACCGACAATGGACAGTTAGGAGACTATCTTCACCCTCGACGAGCATAGAAAGGCGGATACTCCACCATCCTTTGCCC
CGCCCCGAGAGCCTCCTCCCCAAGCGAACGGGCAACGCACGACTAGGAGACTCTCTTCGCCCTCGACGAGCCCAGAAAGG
TG-ATACTACGACATCCTTTATATAGGAGTATTATATGACT---------CGTGCGTATTTCATGGAGAAAAAACCAAAT
AGAAAAACAGCTCGATTTTTAAGGGTTTTCCTGCGGTGATTTCGTAAAAGAAAGAAAATCGCTGTTTGGGCTCTCCCCTC
CCCGCCCGCCCACACAAGTGACTAGAGGCCAACAGAAGAGGAGTGGAATCATTCATTCATTCATCCATGGCTCCCCTCTT
CGCCTCCTGCCACGCATCCCACGCGTCCCTCCTACTCCTCTCCCCCAACCCCGCCGCCGCCGCGCGTCTGCGCGTCGGTG
GCCTCCGAGTCAGGCGGCCCCGCCGCCTCCGCCTCCCCGTACGCACCGCCGCGGGAGGCAGCCCACTCGACGCCGAGATC
CCCGACCCTACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCCGCTTCCGCGCCGGGTTGCTCGCGCCCCGGCGTCAC
CGACGAGTGGGGCGAGCCGGGGGTGGCCGAGCCTGAGCAGCCCTCCGGCGCCGACACCCCTACCAACGACGACGAGTGGG
GCGGGGAGCCCACGCCGACGCCGCCCAAGGCGAAGGAGGCTCCGGTTACGAAGGAGGACGAGGGGCGGGAGGAGCTGAAG
CGGTGCTTGGTGGACACGGTGTACGGCTCCGGCCTGGGCCTCAAGGCGTCCTCGGAGGTCAGGGGGGAGGTCGTGGAGCT
CGTGGCCCAGCTCGAGGCTGCCAATCCCACGTCCGCGCCCGTCCAGGCGCCAGAGCTCGACGGAAACTGGATACTCCTGT
GAGCCTTCCCACTTCTTGCTCTCAATCTGTACTTGCTAGTACTCACTACTTCGATCGTCAGTTCGATACGTCAGTGGAAT
GCTTTATTTGAATTTTAGCCACT--GAATGATTGCGTGCTGTTGCCGTTGTTCTTCTGACCAAAGGGTGTTCTAAGTTGA
GGGCTCCTTTGGTTAATAGGATAGGAATGTCATAGGAATAGGAAAATAATAGGAAGTGAGAT-GACATGTATCCCAATTC
ATATAGGGAAAGAGATGTCATTTGAAGCATAGGATAGAAATTGTTCCATTGAGTC-AGGATAATGTCACTTTTCTTTGAA
ATCTGAAGGATTGGTTCCTATCCTACATAGGAATGAATCCATTCCTACAAACCAAAGAGCTCCAAAGGAATTTTTC-CTT
TAAAACCCCTATCCTATAC-ATTCCTACAAAAATCCTATAAGCCAAAGGAGGCCAAACTGTGTAAGCAATCAACTTCTTA
GGCCTCTTTTGGTTCATAGGATAGGATTATCGTAGGAATAGGAATTTTATAGGAAATGAGATGGCATGTATCTCAAATCC
TACGAGTAGGAATAGAAAACGAGACGTCATTTGGTTGACACCAAAGGAATTTTTCCATTGAGTCTAGGCTGATTTTTATT
TTCCTACGAAATGTGGAGGATAGGAACCAATCCTATGTAGGAATAGGAATCTATTCCTATGAACCGAAGGGCTCTAAAGG
AAAAAATCCTATCCTCTAGAATTCCTATGAAATTCCTCCAAACCAAAGGAGGCCTAAGAATTCTCATTAGCACTGAGGGG
GTCCAGTCAGTTACTT------GTACCTACTTAATTGTGCATGGTCGTCAACTTTCAGGTATACAGCATATTCTGAGCTT
CTACCGATTCTGCTTGCCGGGGCAACACCATTCACCAGAGTTGATAAGATATCCCAAGAAATCGACTCGAGAAGCATGAC
AATAATTAATGCTTCAACTATTTCGACTCCATTTGCTTCCTTTTCATTCAGCGCAACTGCTTCTTTTGAAGTCCAAACTC
CATCAAGGATAGAGGTACAGACCTGGTTCTCGTCAATGTTATGCTAGTCTCAGCTTATACTGCATTGGTTATTTCAGCTT
TCCAGACATGTCATGTGGAAGAGTTAATTTGCTTCTTCAATTACAAATAGAACATTTTGTA--------TCATTTCGCTA
GTTACATTTGCTTCTCATCAATGTTATTTTAGAACACTTTGTATTATGAAATCCAGATAG-------CC-CCTTCGTCAA
ACCATTTCGCTAGTTACATCTACTTGCTATTTTTAAGAAATATGGGATGCAAATTAGTAAATTAGGGAGAGACCCCTTTG
TGTTGCGCTAGACTGAGATATATAGTCTAGCATGGCTGCAAGCCTTCAACTCAAGCATTCAACAGACACATTTGATACCG
GTATTGCCACCTACCTGTCGTTCTCCTAGTTACTGTGCATATAGGATGATAA--------GCAAATCTCTCGTACCAAAT
ATTTGAGGTGCACATCATGGTTATTAAAAGATTTCTTGGATGTTTCATCAGTTACAAGAATACAAGTTGCCCTTTACCAT
GTGTGTAAGCCGTCCTTGATAACATACATATGCCAAACTGACACATTACTTGTTCTCATGAAGGTCCAATTCAAAGAGGG
GAGCTTCCAGCCTCCTGAGATATCATCATCGGTAAATCTACCTGAACAGATCGCCATATTCGGACAGAAGTTCAGCCTAG
GGCCTGTTAAGGAGCTGCTGGAGCCTTTGCAGCGAGCATTTGCTAGCATTGCAGGGTCCATCTCTGGGCAACCACCCCTC
AAGGTACCGATTCCTGGCGACAACAAGGCCAAGTCGTGGCTTTTGACAACCTACCTGGACAAAGACTTGAGGATTTCAAA
AGGCGATGGAGGCGGCGTGTTTATTCTTGCCAAAGAGGGGAGCCCTTTACTAGATTAACTGTACATGTGTAATAGGTGTC
AATATTCATATCTGCAAGGTTGAAAACCAGAGCTACAAGCCTACAACGGAGCATTCTTCCCCCTCTTTGATACACAATTT
TCTGGTGGTTTTCTAGAGTCTGGCAGAATCAACTAAATATTGTCAGTATGGCGTCTCCATACACTTTTTGCTCCTTGGTA
AC----TAGTGTACATTTTTTGTGTTATTAAAAAGGAATGTACACATTACTTTATCGTAAGAGTATTTTCAGCTCCGTAG
CTCAGGCGACTAAACCAAAATTA----------------------------CCTGAGCACCATGACATGGATTGCATGCC
AGATAACTCTGAATTCAATTATTGCTTCTGAGTCCGGGTTCAAACAGGAT-CCCTCTGATCCTCTATAGTTCAATCAAAC
TAAATTTTCAGAAGACATGATTTTTGAAAATTTAGTTCATTTGATTTAACTAAGGAATATGGGAGGGTACCTGAGGTTCA
CAAATTTGCATCGCTAGATACATTTCACACAACTCTGGGCTG------------TGCTTGGAACCAGAATTTCAGTACAA
AAATGCAAGGGAATCAAACTCAAGCGATCAACTGCTCCTTCCATACGAGAGCTTGCTTAAGGTACATCTACATTAACAAT
TGAGACCAGTCACGCTTCAAATACAGAACTGAGAAAATGGCAGTACATCTACATTAACTGACACCTGTCATGCTTCAAAT
ACAGAACTGAGAATATGGCAGCAACACAACGCTTCTCAGCAAATAAGATGTGTATCAGGCAGATATAACCATCTCCTAGA
GAACATTCTAAAAAAAACAGAAGCCTGTAATCTCCACCTTTTCTCTCTAGTAGACTAGATAATTACAGAGCAGAGGCATT
TCCCTGTGAAAAAAACTGTGGACGAAAATGGCGTCGCCTT----------------------------------------
--------------------------------------GTACTGTTGTTATGGTACAACAATTCTAAGTCCTCAAGT
>SNPs
S--SSSSSSSSSSSS------------------------S------S---------------S-----------------
--S-----------------S------------------------S---S------------S-S---------------
--------------------------S---S-------------S--------------S-S-----S----S------S
--------S---------------SS------------------------------------------------------
--------S--S----------------------------------------------S------------S----S-S-
S--------------S---S--------S---------------------------------------------------
-----------------------------------------------------------S--------------------
-----------------------S--------S-------------------------------------S---------
--------------------------S-------S---------------------------------------------
S-S--------------------------------S------S---------S---------------------------
S-----S----------------S------S-----------------------------S-------------------
--------S---------------------------S-----------S-------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------S-------------------------S-----------------------
--------------------------------------------------------------------------------
-S---------------------------S---------------S-----S----------------------------
-S-----------S-----S---------S--S---------------------S-------------------------
-----S-S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S----SS------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
-----------------S--------------------S-------------------S---------------------
-----------------S--------------------------------------------------------------
-------------------------------------------------------------S-------S----------
---------------------------------------------S----------------------------------
-----S--------S-----------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------------------------------------------S-------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------S------------------S----S-----
----------------S------S--------------------------------S--------------------S--
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
--------------------------------------------------------------------------------
--------------------------SS----------------------------------------------------
---------------------------S----------------------------------------------------
------------------------S----------------S--------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
---------------S--------------------S------------------------------------------S
--------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
>forward_145
--------------------------------------------------------------------------------
---------------------------------------------CCTCAGAATTCCAGCTGCCA---------------
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>reverse_2086
--------------------------------------------------------------------------------
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-----TTGTTGCTCTGCCAAAGCA--------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_392
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TCGACCCTCTAACCGGTTCT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2658
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TAGACCTGCTTCTCGTCAATGG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_1088
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CTCCTACTCCTCTCCCCCAG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_2862
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GTGTAGCCCCCTTCGTCAA
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>forward_1606
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CTGGATACTCCTGT
GAGCCC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>reverse_3891
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TCCTGAGCACCATGACATGG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
