>input_sequence_35988
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-----------------------------------------------------ATGCGAGCAAGGGACGACGCGCCAATG
GAGAGGAGGATGATCGCTGCCGCCCGTCGCTTCTTATTCTTCGACCCGTCTTCTTCCTCGCTTCTGCTCTGCCTCCTGCT
CTCGCTCCTCTCAGGTACGGCCGGCGATGCCTCCGTCTCTCGCTTCCCTTCCATCTTTCGCGCGTGAT---TAACTGCAT
GTGATTGCATGGTAGCTTCTGTTTTTTTAGTT-----------GTGCTTCTGTTTTTTTTTCTTTCGGTACGCT------
------TAAGCCCTTGAAAGCTGTTTCTCAAAATTTTGTGTTTCCAGTTTTGAACATTGATGCGG---AAAACA--TACT
TCATCCGATCCAAATTAACTGACGCTGCTGTAGTA---------------------------------------------
----------------------------------------------CAAATTTGCGAGCAAGAGCATGGAGAAAATGAGA
CACGTTGACCGTATATACCGTATCATGCAAAACAGCTGTCTTGGTA--TTATTCAAAATGAATTGTGGCTAGCGATAGTT
CTTCACTTCTTCTTTGAG--------------------------GTCGGCTGTCCAATGTGTC-----TTTGATAGGGAA
GACGGCGAGTTTTCCACGTTGTCCTGTGCAAACGATAAATTTTCCACATCATCCTTGTGACCCTTCTGTTGAAAGCATGC
ACATTGTATCGATATTGACACTCCGTTTAATATTTTTCATCAAATTGTGTTGCGTGCATCGCTATTTTTGTGTG------
TTTGGTCGAGTACGACCTCTTAGCCGAAAGCATTGTTACGAGCCAGTTTACATGACAACGGAACTTGTTTCAGTTTTTTA
TATAACTTTTTTT---ATGTTGTCATCAGTGGATGTTTTCTTGCCAATCAT--ACTGACCTTCTCTTTTGGACGTGTCGC
CGCACC-TACGCTGACGGCAGCCAACAATGGCATTGTATCGGCGGCGAATGCGCCACTCAAGTTCGGCATCAACTACGGC
CAGATAGCGAACAACCTCCCGCACCCGGCGCAGGTGTCCGGCCTCATCCGGTCGCTCAACGCCAATAGGGTCAAGCTCTA
TGACGCCGACCCGGCCGTCCTCACGGCCTTCGCCGGCACAGGCGTCGAGTTCACCATCAGCAACGGGGACCTCCTCAACA
TGTCCGACGCCGGCAACGCGCGCGCATGGGTGGCGCAGAACGTCCAGCCCTTCCTCCCGGACACCCGCATCACCTGCGTC
ATCCTCGGCAACGAGGTGCTCTCCGGCACAGACGCGGCCGCCATGCAGAGCCTCCTCCCCGCCATGCAGGCCGTGCACCA
GGCGCTGGTGGACCTGGGCCTCGACGGCCAGGTGAACGTGTCGACGTCCCAGTCCGTCAACGTGCTCGCCAGCAGCTACC
CGCCGTCGGCCGGCGCGTTCCGGGAGGAGGTCGTGCAGTACATGCGGCCGCTGCTGGACTTCCTCGCCGAGGTCGGCTCG
CCGTTCCTGATCAACGCGTACCCGTTCTTCGCCTACAAGGCCAGCCCCGGGAGCGTGTCGCTGCCGTATGTGCTGTTCGA
GCCCAACCCCGGTGCGCACGACCCCGGCACCAACCTCACCTACGACAACATGCTCTACGCCCAGATCGACGCCGTGTACG
CGGCCATGGAGGCCATGGGGCACAAGGACATCGCCGTGAGGATCTCCGAGACCGGGTGGCCGTCCGCCGGGGACGCCGAC
GAGGTGGGCGCCACCGTGCAGAACGCCGCCACGTACAACGGGAACCTCATGAAGAGGGTCGCGGCGGGCCAGGGGACGCC
GCTGAGGCCGGACGTGCCCGTGGACGTGCTCGTCTTCGCCCTGTTCAACGAGAACATGAAGAACGGGCAGGCGTCCGAGA
GGAACTACGGGCTGTTCTACCCCAACGGCACGTCGGTGTACGACCTCGGGTTCGACGCGGCGTCGTTCAGCCC---GTCG
CCGAGGGCATCGGGGTTTTCCTCTTCTTCCAAGCCGACGGTAAGTATGAAAGCTCTGGACCG-ATTATCTTACTTACGCT
TGAATGCAAATTTCACTTGCAAATCGATCGGGACTAAAACTGTTCCAAAAAGACATTATT--TTCTCAACTACATTGATG
TCGAAAAAGAAAACTTTACAAAACCTAACAAGGTGGAAAAACTGC-----AAGTACTTTGAGCTGTTGAGAAGAACTGTA
GGTACATCACCGTGACCTTGGTTCTGTCGCTGTTTCTAAGCTCACAATTTTCTTTCCGTCTG----TTTGCTGTTGCAGA
TGCAGATGTCTTTTCCGGTGGGGGTGGTTGTCCTGCTTGCAGCATTTCTCTTGTAA------------------------
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>chr1A_1_TraesCS1A01G276200
ACCAATAAGTAAAATATGATGCAAGATGCACTCATCACCGAACAGTGGGACTGCTCAATGCCGACCGGCCCGAGCAACCA
CGTTGGAGTTGTCCCAATCAAGCTAGTAGAGTTTTTT--CCTCTTATGTAGCATAAAATGGCATGGTTATTAAAGATTAA
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---AAAAACATTGAGAGCATCAA-GGGCACTCCAATTTTGTCTCCTCAAATCAAATTTTTAGAAAACAAATCAAACTCAG
AAATTCCTTCGCCAACGAAGGAATTCAATG--------------------------------------------------
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----------------------------------------------------------AACCTTTCCATGTATGGTGTTC
TTCTTTTTTTTCGAAACGGAGGCAAAAAATTTGCCTCATTCATTAAATAAGACGAGAATAGAGTTCTCATCCAAGGTCCG
GCTCTGAACTTTCTGCAAGAGGCAAGTGATCAAACTCAATATGAAAAGATAGTTAGGTCGGTTTGGTTCCATCCAAAACT
GTAGTCTCATTGACGACCGATCTCTCCTACCTTCTGGGGCCATGAAGCTCCCAGCCCCCTAC--CTGGTGTGACGTGCTG
ACGCGCAAGTTTTAATACTGTTCAGCGACTTTCACCGGCCGACTTGTTTCTGTCGCCAGCTCCAGCGAGG---CTGCCGT
GCGATCG---------------------ACGAGCGGCCGCAGCACGAACGGCGGTTCTCACATA----------AGTTAG
GGGAGTTTCTGCACTTCAAAAATATTCAGACATCACTT------------------------------------------
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-------------------------------------------------------GGAGCATATTTGTTTTGAAAGAGAA
AAACTGGATTTTGCCCGTCTATAACCTTACCTTGTCTGGCTAGTAGTCGTTTGGGAAGGAGTGGCCGTCTGAGAGACGGA
TGTTTCGTTGGCCTATCGCGATTTGGACTTTGGAAGCTAGCGCTTGCAGGAGGATAGTACGTCGCGTGCGTAATCTGACC
TGCCGCCCCGAGCCTGCAACTGCTCCCATATAAACGCGCGGGGAAACGGGGGCGGCCGGAG----GCCTTCCTTCCCTTC
TTCCTTCCGTGTCGCTCTGAAGGACAGAGCGGACACGAAGGAGAGAA--AGAGATGCGAGCAAGGGACGACGCGCCAATG
GAGAGGAGGATGATCGCTGCCGCCCGTCGCTTCTTATTCTTCGACCCGTCTTCTTCCTCGCTTCTGCTCTGCCTCCTGCT
CTCGCTCCTCTCAGGTACGGCCGGCGATGCCTCCGTCTCTCGCTTCCCTTCCATCTTTCGCGCGTGAT---TAACTGCAT
GTGATTGCATGGTAGCTTCTGTTTTTTTAGTT-----------GTGCTTCTGTTTTTTTTTCTTTCGGTACGCT------
------TAAGCCCTTGAAAGCTGTTTCTCAAAATTTTGTGTTTCCAGTTTTGAACATTGATGCGG---AAAACA--TACT
TCATCCGATCCAAATTAACTGACGCTGCTGTAGTA---------------------------------------------
----------------------------------------------CAAATTTGCGAGCAAGAGCATGGAGAAAATGAGA
CACGTTGACCGTATATACCGTATCATGCAAAACAGCTGTCTTGGTA--TTATTCAAAATGAATTGTGGCTAGCGATAGTT
CTTCACTTCTTCTTTGAG--------------------------GTCGGCTGTCCAATGTGTC-----TTTGATAGGGAA
GACGGCGAGTTTTCCACGTTGTCCTGTGCAAACGATAAATTTTCCACATCATCCTTGTGACCCTTCTGTTGAAAGCATGC
ACATTGTATCGATATTGACACTCCGTTTAATATTTTTCATCAAATTGTGTTGCGTGCATCGCTATTTTTGTGTG------
TTTGGTCGAGTACGACCTCTTAGCCGAAAGCATTGTTACGAGCCAGTTTACATGACAACGGAACTTGTTTCAGTTTTTTA
TATAACTTTTTTT---ATGTTGTCATCAGTGGATGTTTTCTTGCCAATCAT--ACTGACCTTCTCTTTTGGACGTGTCGC
CGCACC-TACGCTGACGGCAGCCAACAATGGCATTGTATCGGCGGCGAATGCGCCACTCAAGTTCGGCATCAACTACGGC
CAGATAGCGAACAACCTCCCGCACCCGGCGCAGGTGTCCGGCCTCATCCGGTCGCTCAACGCCAATAGGGTCAAGCTCTA
TGACGCCGACCCGGCCGTCCTCACGGCCTTCGCCGGCACAGGCGTCGAGTTCACCATCAGCAACGGGGACCTCCTCAACA
TGTCCGACGCCGGCAACGCGCGCGCATGGGTGGCGCAGAACGTCCAGCCCTTCCTCCCGGACACCCGCATCACCTGCGTC
ATCCTCGGCAACGAGGTGCTCTCCGGCACAGACGCGGCCGCCATGCAGAGCCTCCTCCCCGCCATGCAGGCCGTGCACCA
GGCGCTGGTGGACCTGGGCCTCGACGGCCAGGTGAACGTGTCGACGTCCCAGTCCGTCAACGTGCTCGCCAGCAGCTACC
CGCCGTCGGCCGGCGCGTTCCGGGAGGAGGTCGTGCAGTACATGCGGCCGCTGCTGGACTTCCTCGCCGAGGTCGGCTCG
CCGTTCCTGATCAACGCGTACCCGTTCTTCGCCTACAAGGCCAGCCCCGGGAGCGTGTCGCTGCCGTATGTGCTGTTCGA
GCCCAACCCCGGTGCGCACGACCCCGGCACCAACCTCACCTACGACAACATGCTCTACGCCCAGATCGACGCCGTGTACG
CGGCCATGGAGGCCATGGGGCACAAGGACATCGCCGTGAGGATCTCCGAGACCGGGTGGCCGTCCGCCGGGGACGCCGAC
GAGGTGGGCGCCACCGTGCAGAACGCCGCCACGTACAACGGGAACCTCATGAAGAGGGTCGCGGCGGGCCAGGGGACGCC
GCTGAGGCCGGACGTGCCCGTGGACGTGCTCGTCTTCGCCCTGTTCAACGAGAACATGAAGAACGGGCAGGCGTCCGAGA
GGAACTACGGGCTGTTCTACCCCAACGGCACGTCGGTGTACGACCTCGGGTTCGACGCGGCGTCGTTCAGCCC---GTCG
CCGAGGGCATCGGGGTTTTCCTCTTCTTCCAAGCCGACGGTAAGTATGAAAGCTCTGGACCG-ATTATCTTACTTACGCT
TGAATGCAAATTTCACTTGCAAATCGATCGGGACTAAAACTGTTCCAAAAAGACATTATT--TTCTCAACTACATTGATG
TCGAAAAAGAAAACTTTACAAAACCTAACAAGGTGGAAAAACTGC-----AAGTACTTTGAGCTGTTGAGAAGAACTGTA
GGTACATCACCGTGACCTTGGTTCTGTCGCTGTTTCTAAGCTCACAATTTTCTTTCCGTCTG----TTTGCTGTTGCAGA
TGCAGATGTCTTTTCCGGTGGGGGTGGTTGTCCTGCTTGCAGCATTTCTCTTGTAATCACCATCGACAAGTATATTTAGG
CATTTAGCTATTGTGATTGGTCACTAACCGATAGTTCAGTTTGTGCCAACATGCATGGCACATGAGATCAGCTGATCGTA
CATTGTTCTCGCACTAGGTAAGCTTATCTTGATTCTTGACCATACCACTGTTTGTAATTCA-------------------
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--------------------------------------------------------GCTGTTCTAGTTCTTTTTTCAAGG
GGGGAACCAGTTTTCTTTGCGGATAAAAACACATTTTTTAGAAG--TACCGTACAAACGCATGCATC-------CACAAC
ATGCAACACACTCATCCGCTATGAAAGCGCACATGAACACACTATCCCTATAAGCACCTTCAAGAAATTGAGCCGACACG
ATCTTGTTATTGACGAAGTCGACACAGACATCTCGAAGCCGATGAACATGTCATACAAGTGAATGAATAGTGCCGAAAAC
CTTGAAAATATGCGACCACATGTGCCAAGTCTCAAACTTGAATCCTGGTGTGCTGATTTCACCACAAGAAATCTAACCAT
GTACATAAAGAATTTTCATTCAATTGTCATATCAAAGTGATACAACCGCACTGAGTG--AAACCATCGTCAGCATAACTA
GAAGTGCACAAACATACTT-ACACAGACAAAAATAGGATGAAATCACTATTCTGACCTTGTTAAAAAATTATAACACAAA
ATAAACTCTTCACGAAAGTATTTCGTAATCTGATCCTTTTCGCAACATCACAAACCGTGGCGTTGCTAATGACCATCAAA
ACGCCAAACCAGCCAGCGTTGCTGCCCTGACCACACTGACGTCACTGATGTGACAGGCTCAAAACGCCAAGGGCCATGTC
GTTTCTAAATAAAAACGTCAAAGGCTATGGCGTTGCTGCCCATTAAGCTATGGGGGAATATAATGAGTACTGGTAGCACT
GCTCTACTTAACGTGATGATTGCGTGCCCAGTCGGCCCTTGAGTGGTCGACGAACATCGAGCATCCATGGCCGAAAAGAT
AGAGGAATAACGAGCTGTGGAGC
>chr1D_1
ACCAATAAGTAAAATATGATGCAAGATGCACCCATCACCGAACAGTGTGACTGCTCAATGCCGACCGGCCCGAGCAACCA
CGTTGGAGTTGTCCCAATCAAGCTAGAGT--TTTTTT--CCCCTTATGTAGCATAAAATGGCATGG---CTAAAGATTAA
AAAAAGACACCGATAACGCCCACACGTATGGGCGCTAAGGGGTCTATCCACACGTTTTATGTGGTGTTTAAAAGGATCAA
TTCACACGCCTACGTGTGGGCAAAACAAATAATGCTCACACGTCTCTTTTTTTCCTCACGGTCCCTCTCACACGCCTACG
TGTGGACAAAATAGATAACGCCCACACGCCCGTACGTCAGGCCGCCTACCTCATGGTCCCGCACGCCCCGCGTGACAGTC
ACCACGCGCCCCGCAGTTGCCATGGTCCGGCCCCTCTTCCATGTTCGTTTAACTGCAGTTGTCATGTCGTTGAACTACAG
TTGCCATGTTGGACAACTACAGTTTCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCAGATGTCATTTTT
GGACAACTGCAACTGTTGCCATGTATGATCTGGTTTACTATAGTTGCCATGATTTGAAAACTTTAGGGGTTGCCACCTAC
TAACACTAGGCAGTTGCCATGTATGGTCCGGTTTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTA
ACACTAGGCAGTTGCCGTGTAGCGCAACAAAAAGACATGACAAAATAACATGTTCGGGTAAAGAGAGAGTTGACATCTGC
TTACAAGCACACTAGGGCAGTTGCCATGTACCCCTGGCAACTGACATGTTCGGGTAAAAGAGAGAGTTGTCATCTGCTTA
CAAGCACACTAGGGCAGTTGCCATGCACCCCTGGCAATTGACATGTTCGGGTAAAAGAGAGAGTTGTCATCTGCTTACAA
GCACACTAGGGCAATTGCCATGTACCCCGCAAAACACATGGCAATTGGCAGCTTTGGGTGTGCGAGAGGAGACGGGCGTG
TGGGCGGACCGATAAATGCCCACACACCAGCCCCTGTGCGTGAATGAAAACTGACGAGTGGGCGGACTGCTAAACGCCCA
CACACCGGTCCTTCCGTGTGGGCGACCGGATGAATGCGCACACACCAGCCCAGTCCTACGTGGCACCACAAACATGCCAA
GATTCGTGCAACCACAAACGGACGTGGATACACGCATGTGGGCGAGATGCAAATGCCCACACGTGTGGGCGTTAATATTT
TCGAAAAAAATTGAGAGCATCAA-GAGCACTCCAATTTCGTCTCCTCTTCTTGA--TTTTTGGAAACAAATCAAACTCAG
AAATTCCTTCGCCAACAAAGGAATTTAATT--------------------------------------------------
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----------------------------------------------------------GACCTTTCCATGTATGGCGTTC
TCATCCAAGGAAACCATGCCACTAT---------------------------------------------------TCCG
GCTCTGAAGTTTCTGCAAGAGGCAAGTGATCAAACTCAATATGAAAAGATGGTTAGGCCGGTTTGGTTCCA----AAACT
GTAGTCTCGCTGACGACCGATCTCTCCTACCTTCTGGGGCCATGAAGCTCCCAGCTCCCTATCTCTGGTGTGACGTGCTG
ACGCGCAAGTTTTAATACTGTTCAGCGACTTTCACCGGCCGACCTGTTTGTGTCGCCAGCTCCAGCGAGGCTACTGCAGT
GCGATCG---------------------ACGAGCGGCCGCACTACGAACGGCAGTTTTCACATA----------AGTTAG
GGGAGTTTTTGGACTTCAAAAATATTCAGACATCACTGGGAGTCGCCTCCCCCTCCCCCTCGCGTCGCCTCCCTCCAGGC
GGCGCCAGGGGCCCCGAAACCCTAGCGCCGCCAGCATCTTTCTTGCTGCCCCTTCCTGCCGCCGCTGCCGCTGGCGTGGG
CCGCGGTGGCGGCGGGCCCGGTGCCGAAGGTTTCTGGGCGGGTGGATGCGGCGGATCCCATCTGAGACGGCGGGGGCGGC
TCCTCTCGTGCGATCCAACGGCGGCGGCTAGGACGGCGAATCCGGGCTGTGCGGCGGGGGCCGGAGCACCATCGCCAGCG
GAGCGGCGGCCCTGCATGGACGGCGGCGGTAGCAGCGCCCCATCCGGCGGGGTGGGCTGTCCTGGTCGTGATGGTGAAGG
CGGTCACTGCGGATCCAACGCCCCGTTTGGATCCGTCGCGGGGAGGCCTTCCGCCGACCGGCGACGCGTGGAGGGACCGG
TGAGGAGATGCCGGATCTCCGCCGGAGTACCGACAGCGACATACGTCTTCGTGGCGAGGTTTCGCTCGGTTCCAGCCAGC
CACGAGGTCGGGAAGACGTGGCTTCCGGTGAAAATCGCGCCTGACTGCGGTCTTGGCGGACGATGGCGGCGTCTCAGACG
TCGTTCCCTTCTGAAGGCATCGATGTTGCAGGTCACATCAACCTGATCGGGAAGTTCCGGGGGAAACCCTAGATCTGGGT
ATACCGGATCGGACGATGACGGTGCCTTCGATATCGTTCTCCCTCATGGGGGCATCGTTTTGGAGCAAGTGCTGGTTGGA
GGGGACAAGAGGAGGAGCGGTGTTTCCTCTGCTCCATTGATGACGGCGGATCTTGGCGGCGTGGCGCAGTGTAGACTCGG
CGCTTGATGAGCGGAGAAGGACTCGCGCAGGAGGGTGACGCTGCCTGGCGTCGTGGTGGCGTCGGTGGCAGTTAGACCGG
GCAAGGTTGATGCAGCAGTACAGCTCTGAAAATGGATTGGTGGCAGGTGGCCGCTGTGGCCTCATACCTGGCAGGCGTCC
TGGTTGAGAAGCACGCCAAACTGATGGGTGCCCATACCCGGCAGGCGTCCTGGTTGGGACCTCAAGTCTTAGATTTTAGG
TTTGGCTGCGAGGTCTGTTTGGTATTAGGCCAAGACTTTCAGCGCCCCTACATCAACTGGATAGGGATAACGACAGATGT
TGCTTAGTTTGGTGGCTTTAGGCTTATTGTTGTATGACTCTATAAGGTCTTGTGTCAATAATTAATAAAATGGCATATGC
ATCGTCCAGATGCAGAGGCCGGGGGTCGCCCTCCTTTTCTTAAAAAAAAAAACTGGGAGCATATTTGTGTTGAAAGAGAA
AAACTGGATTTTGCCCGTCTATAACCTTACCTTGCCTGGCTAGTAGTCGTTTGGGAAGGAGTGGCCGTCTGAGGGATGGA
TATTTCGTTGGCCTATCGCGATTTGGACTTTGGAAGCTAGCGCTTGCAGGAGGATAGTACGTCGCGTGCGTAATCTGACC
TGCCGCCCGGAGCCTGCAACTGCTCCCATATAAACGCGCGGCGAAACAGGGGCGGCCGGAG----GCCTTCCTTCCCTTC
TTCCTTCCGTGTCGCTCTGAAGGACAGAGCGGACACGAAGGAGAGAA--AGAGATGCGAGCAAGGGACGACGCGCCAATG
GAGAGGAGGATGATCGCTGCCGGCCGTCG------CTTCTTCGACTCGTCTTCTTCCTTGCTTCTGCTCTGCCTCCTGCT
CTCGCTCCTCTCAGGTACGGCCGGCGATACCTCCGTCCCTCGCTTCCCTTCCATCTTTCGCGCGTGATTAATAACTGCAT
GTGATTGCATGGTAGCTTCTGTTTTTTTTTCTTTTTTGAGTTGGTGCTTCTGTTTTTTTTTTCTGGTACGCTTGTAGTAC
GAAAAGTAAGTCCTTCAAAGCTGTTGCTCA-AATTTTGTGTTTCCAGTTTTGAACATTGATGAAAAAAAAAACA--TACT
CCATCCGATTCAAATTAACTGACGCTGCTTTAGTT---------------------------------------------
----------------------------------------------CAAGTTTGCAAACACGAGCATGGAGAAAATGAGA
CACGTTGACCGTATATGCCGTATCATGCAAAACCGCTGTCTTGGTA--TTATTCAAGATGAATTGTGGCTAGCGATAGTT
CTTCACTTCTTCTTTGAG--------------------------GTCGGCTGTCCAATGTGTCTTTGATTTGATAGGGAA
GACGAGGAGTTTTCCACGTTGTCCTGTGGAACCAATAAATTTTCCACATCATCCCTGTGACCCCCCT-TTGAAACCATGC
ACATT----TGATATTGACACTTCGTTTGATATTTTTCATCTGGTTGTGTTGCGTGCATCACTATTTTTGTGT----ATT
TTTGGTCGAGTACGACCTCTTAGC-GAAAGCATTGCTACGAGCCAGTTTACATGACAACGGAACTTGTTTTAGTTTTCTA
TATAATTTTTTTTTTCATGTTGTCATCAGTGGATATTTTCTTGCCAATCAT--ATTGACCTTCTCTTTTGGACGTATCGC
CGCACC-TACGCTGACGGCAGCCAACAATGGCATTGTATCGGCGGCGACGGCGCCACTCAAGTTCGGCATCAACTACGGC
CAAATAGCGAACAACCTCCCGCACCCGGCGCAGGTGTCCGGCCTCCTCCGGTCGCTCAACGTCAACAGGGTCAAGCTCTA
CGACGCCGACCCGGCCGTCCTCACGGCCTTCGCCGGCACAGGCGTCGAGTTCACCATCAGCAACGGGGACCTCCTCAACA
TGTCCGACGCCCGCAACGCGCGCGCCTGGGTGGCGCAGAACGTCCAGCCCTTCCTCCCGGACACCCGCATCACCTGCGTC
ATCCTCGGCAACGAGGTGCTCTCCGGCACCGACGCGTCCGCCATGCAGAGCCTCCTCCCCGCCATGCAGGCCGTGCACCA
GGCGCTGGTGGACCTGGGCCTCGACGACCAGGTGAACGTGTCGACGTCCCAGTCCGTCAACGTGCTCGCCAGCAGCTACC
CGCCGTCGGCCGGCACGTTCCGGGAGGACCTCGCGCAGTACATGCGGCCGCTGCTGGACTTTCTCGCCGAGCTCGGCTCG
CCGTTCCTGATCAACGCGTACCCGTTCTTCGCCTACAAGGCCAGCCCCGGGAGCGTGTCGCTGCCGTACGTGCTGTTCGA
GCCCAACCCCGGCGCGCACGACCCCGGCACCAACCTCACCTACGACAACATGCTCTACGCCCAGATCGACGCCGTCTACG
CGGCCATGGAGGCCATGGGGCACAAGGACATCGCCGTGAGGATCTCCGAGACCGGGTGGCCGTCCGCCGGGGACGCCGAC
GAGGTGGGCGCCACCGTGCAGAACGCCGCCACGTACAACGGGAACCTGATGAAGCGGGTCGCGGCGGGCCAGGGGACGCC
GCTGAGGCCGGATGTGCCCGTGGACGTGCTCGTCTTCGCCCTGTTCAACGAGAACATGAAGCAGGGGCAGGCGTCCGAGA
GGAACTACGGGCTGTTCTACCCCAACGGCACGTCGGTGTACGACCTCGGGTTCGGCGGGGCGTCGTTCGGCCCGTCGTCG
CCGACGGCGTCGGGGTTTTCCTCTTCTTCCAAGCCGACGGTAAGTAAGAAAGCTCTGCATCG----ATCTTACTTACGCT
TGAATGCAAGTTCCACATGCAAATCGATCGGGACCAAAACTGTTCCAAAAAGACGCTAAATCTTCTCAGCTACATTGATC
TCGAAAAAGAAAACTTTACAAAACCTAACAAGGTGGAAAAACTGCACTCGAAGTACTTTGAGCGGTTGAGAAGAACTGTA
GGTACATCACCGTGACCATGGTTCTGTCGCTGTTTCTAAGCTCACCATTTTCTTTGCGTCTG----TTTGCTGTTGCAGA
TA------TCTTTTCCGGTGGGGGTGGTTGTCCTGTTTGCAGCATTTCTCTTGTAATCACCATCCAGAAGTGTATTTAGG
CATTTAGCTATTGTGATTGGCCACTAACCGATAGTTCAGTTTGTGCCAACATGCATGGCACATAAGATCAGCTGATCGTA
CATTGTTCTCGCACTAGGTAAGTTTTTTTTCCTGAAAGGGAGGCAAATCTATTAATTAAGAGAGAATAGAATTTGTTGGG
TTACAGTAGGGCATTACAATACACCGCCAATACAAATGGTCATTACTCTCTTGGCATCATAGTACCCAAGTGTTTGGCAC
CTGCTGTGACCCAAACCGCCGCCTCAACCTTGATATTGCTAAGCAGGACCATCGGAGGGATGCTCTTTTGACGGGAGACG
TGCATTTCTTTCATTTCAAATGGTCCAAGAGATAAGCATGGTTAACGAAGCCATCGGCTGTTCTAGTTCTTTTTTCAAGG
GC-AAACTCGTTTTATTTGTGGATAAT-ACACATTTTTTAGAAG--CACCGTACAAACGCATGCACC-------CACAAC
ATGCAACACACTCATACCCTATGAAAGCAGATATGAACATCCTATCCCTATGAGCACCTTCAAGAAATTGAGCCGACACG
ATCTTATTAGTGACGAAGTTGACAGAGACATCTCGAAGTCGACAGGCATGTCATACAAGTGAATGAATAGCGTCGAAAAT
CTTGAAAATATGCGACCACACGGGCCAAGTTTCGGACTTGAATCCTTGTGAACTGATTTCACCACAAGAAATCTAATCAT
CTACATAAAGGATTTTCATCCAATCGTCG---CAAAGTGATACAACTGCACCGAGTGTAAAACCGTCCTCAGCATAACTA
GATGCACATAAACATACTTTACGCAAACAAAAATA---------------------------------------------
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>chr1B_81
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CGTTGGAGTTGTCCCAATCAAGCTAGAGT--TTTTTTTACCCCTTATGTACCATTACATGGCATGG---TTAAAGATTAA
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---AAAAACATTGAGAGCATCAAAGGGCACTCAAATTTTGTCTCCTCTTCTTGA--TTTTTGGAAACAAACCAAACTCAG
AAATTCCTTCGCCAACGAAGGAATTTAACTAGGGAATCGTTTCCAGCCGGCGCACCGGCAGAAACGTTCCGCCGGACTCG
CACGCGTCGTTTGATCCCGTGCGATCCCACCGTCCCACTTGCGCCATATGTGGCCCCACAAACCGCTTTTCTCTCTCTCG
CTTATCTTCTTCCCGAGAGCGCACCTCCACTCATTCGATCCCCTTCTTTTTCCCTCTCTCTGGCGCGATCAACATCTCCT
CGATTCACTCCCCACCGAATCCTTTTCACCCCACTCAGCCGCAGGGCTGCTGCTATGGTGGGACGCCGCATCGGCCGTGG
GGGCTGCTGCTCATGGCTGCGCTCTCTCCAGATTCCCTCCCCCATGGCCACGGAGACCATGGCCATGCAGCCGCCGTGGT
GATTTTCGCACCGACGACGGTGCTGCAATCAGCACCAGCCGTAGATGGAGACGAAAGCCCCACTGATGTTGCAAACCAGC
AGCTACGACGGTGCTGCAACCACTGCTCGTCACCATGGTCGGACTACAATCGACCACGACGATGGTGGATTTCCTTTTTT
TGCTACAACCATGTGTTGTTTTTGCTGGAACCGGCCCATGTTTTTGCTACCACCCACCCTCCCAAAATTTGCTACCAGGT
GATTTTTGCTGCAACCGATGAACCATTTTGCTACAACCGTTTCGATTTTTTGTTACTATCGGTGTTTGTCGATTTTTGCT
ACATCCATCTTCTGTTTTTCCTGTCTTTTTTGCTACAACCCTATTTTGATTTTGCTGGAATTGAAGACATTTTTTGCTAC
AGCCACTCACAGCGATGTTGTTCAACGACGGCGATGCCTTTTTTTGCTACAACTGTCTCGGATTTTTGCTACTATTGGAG
ATGCCATTTGCTATCACCGGAGTTTTTGCTACTACCAGAGTCTTCCTGGAATCATCAGGAGTTTTTGCTACCACCCTTGT
TTTTGTTTTGGCTTTGCTGGAACCATCCTAAAAATTGCTACCACCGTCTTTTGATTTTGCTGGAACCAGCATTTTTCGCT
TCTGCGTCGACGGTGAAGGCAGGTGGTGTTTTGGTTCGCCGGCGGCGGTGAGGCTGCGAGCGCCGGGGACGAGCAGGGCC
AACGGTGGTCCAAGCCAGAGCAGCGTGGGCCAGCGTGCGGGATCCCGCGAGCGGCGGCGGCGCTTGCTTTTTTCCTCTTC
TTTTTTCCCGTGGGGGAGGATGACGATAGGAGATGTGGGGCAGATCTGACGGTAACGTGCGTCCAGATCGAGCGGCTCTG
GTTTGACCGGCCGAAACGTTCCGCCGGTGCGCCGGCGCAGAGTACTGCCCATTTAACTAACCTTTTCATGTATGGCGTTC
TCATCCAAGGAAACCACGCCACTAT---------------------------------------------------TCCG
GCTCTGAACTTTCTGCAAGAGGCAAGTGATCAAACTCAATATGAAAAGATGGTTAGGCCGATTTGGTTCCA----AAACT
GTAGTCTCCCTGACGACCGATCTCTCCTACCTTCTGGGGCCATGAAGCTCCCAGCTCCCTATCT--GGTGTGACGTGCTG
ACGCGCAAGTTTTAATACTGTTCAGCGACTTTCACCGGCCGACTTGTTTGTGTCGCCAGCTCCAGCGAGG---CTGCAGA
CTGCAGTACGATCGACGTCCCGCCTTATACGAGCGGCCGCAGTATGAACGGCAGTTTTCACATGCTCCTTACTTAGTTAG
GGTAGTTTTTGCACTTGGAAAATATTCAGACATC----------------------------------------------
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---------------------------------------------------ACTGGGAGCATATTTGTGTTGAAAGAGAA
AAACTGGATTTTGCCCGTCTATAACCTTACCTTGCCTGGCTAGTAGTCGTTTGGGAAGGAGTGGCCGTCTGAGAGATGGA
TGTTTCGTTGGCCTATCGCGATTTGGACTTTGGAAGCTAGCGCTTGCAGGAGGATAGTACGTCGCGTGCGTAATCTGACC
TGCCGCCCCGAGCCTGCACCTGCTCCCATATAAACGCGCGGGGAAACAGGGGCCGCCGGAGGGACGCCTTCCTTCCCTTC
CTCCTTCCGTGTCGCTCTGAAGGAGAGAGCAGACGCCAAGGAGAGAAAGAGAGATGCGAGCAAGGGACGACGCGCCAATG
GAGAGTAGGATGATCGCTGCCGCCCGTCGCTTCTTCTTCTTCGACTCGTCTTCTTCCTCGCTTCTGCTCTGCCTCCTGCT
CTCGCTCCTCTCAGGTACGGCCGGCGATGCCTCCGTCTCTCGCTTCCCTTCCATCTTTCGCGCGTGAT---TAACTGCAT
GTGATTGCATGGTACAGCTTTTTTTTAAATAA------------------------------------------------
-------------TTAAAAGCTGTTCCTCG-AATTTTGTGTTTCTAGTTTTGAACATTGATGCGA---AAAACATATACT
CCCTTCAATTCAAATTAATTGACGCTGCTTTAGTAAACCTTTAATTAATACTCTCTCCGTTTCATAATGTTTTTGACACT
ACACTAGTGTCAAAAAAATCTCCTACATTATGAGATGGAGGGAATACAAGTTTGCAAACACAAGCATGGAGAAAACGAGG
CGAGTTGACCGTATATACCGTATCATGCAAAACAGCTGTCTTGGTATGTTATTCAAGATGAATTGTAGCTAGCGATAGTT
CTTGTATGAGGTCGTTCTCCAAGGATCAGCTTAGCGTATTTTCAGTCGGCTGTCCGACGTGT------TTTGACAGGGAA
GACGGCGAGTTTTCCACGTTGTCCTGTGGAACCAATAAATTTTCTACATGATCCCTGTGACCCCT-TGTTGAAACCATGC
ACATT----CGATATTGACACTCCGTTTGATAATTTTCATCTGGTTGTGTTGCATGTATCACTATTTTTGTGAATTAATT
TTCGGTCGAGTACGACCTCTTAGCCGAAAGCATTACTACAAGCCAATTTA------------------TTTAGTTTTCTA
TATAATTTC--TTTTCATGTTGTCATCAGTGGATATTTTCTTGCCAATCATATATTGACCTTCTCTTTTGGACGTGTCGC
CGCACCTTACGCTGACGGCAGCCAACAATGGCATTGTATCGGCGGCGACGGCGCCACTCAAGTTCGGCATCAACTACGGC
CAGATAGCGAACAACCTCCCGCACCCGGCGCAGGTGTCCGGCCTCCTCCGGTCGCTTAACGTCAACAGGGTCAAACTCTA
CGACGCCGACCCGGCCGTCCTCACGGCCTTCGCCGGCACAGGCGTCGAGTTCACCATCAGTAACGGGGATCTCCTCAACA
TGTCCGACGCCCGCAACGCGCGCGCCTGGGTGGCGCAGAACGTCCAGCCCTTCCTCCCGGACACCCGCATCACCTGCGTC
ATCCTCGGCAACGAGGTGCTCTCCGGCACCGACGCGGCCGCCATGCAGAGCCTCCTCCCCGCCATGCAGGCCGTGCACCA
GGCGCTGGTGGACCTGGGCCTCGACGGCCAGGTGAACGTGTCGACGTCCCAGTCCGTCAACGTGCTCGCCAACAGCTACC
CGCCGTCGGCTGGCGTGTTCCGGGAGGACCTCGCGCAGTACATGCGGCCGCTGCTGGACTTCCTCGCCGAGGTCGGCTCG
CCGTTCCTGATCAACGCGTACCCGTTCTTCGCCTACAAGGCCAGCCCCGGGAGCGTGTCGCTGCCGTACGTGCTGTTCGA
GCCCAACCCCGGCGCGCATGACCCCGGCACCAACCTCACCTACGACAACATGCTCTACGCCCAGATCGACGCCGTGTACG
CGGCCATGGAGGCCATGGGGCACAAGGACATCGCCGTGCGGATCTCTGAGACCGGGTGGCCGTCCGCGGGGGACGCCGAC
GAGGTGGGCGCCACTATACAGAATGCCGCCACCTACAATGGGAACCTGATGAAGAGGGTCGCGGCGGGCCAGGGGACGCC
GCTCAGGCCGGATGTGCCCGTGGACGTGCTCGTCTTCGCCCTCTTCAACGAGAACATGAAGACCGGGCAGGCATCCGAGA
GGAACTACGGGCTGTTCTACCCCAACGGCACGTCGGTGTACGACCTCGGGTTCGGCGGGGCGTCGTTCGGCCCGTCGTCG
CCGACGGCGTCGGGGTTCTCCGCTTCTTCCAAGCCGACGGTAAGTAAGAAAGCTCTGGACCAAATTATCTTACTTACGCT
TGAATGCAAATTTCACTTGCAAATGGGTCGGGACCAAAACTGTTCTAAAAAGACACTATT--TTCTCAACTACATTGATC
TCGAAAAAGAAAACTTTACAAAACCTAACAAGGTGGAAAAACTGCACTCGAAGTACTTTGAGCGGTTGAGAGGAACTGTA
GGTACATCACCGT--------------CGCTGTTTCTAAGCTCACAATTTTCTTTTTTCTTTTTTTTTTGCTGTTGCAGT
TGCAGATGCCTTTTCCGGTCGGGGTGGTTGTCCTGCTTGCAGCATTTCTCTTGTAATCACCATCCACAAGTATATTTAGG
CATTTAGCTATTGTGATTGGTCACTAACCGATAGTTCAGTTTGTGCCAACATGCATGGCACATGAGATCCGCTGACCGTA
CATTGTTGTCGCACTAGGTAATTTTATCTTGATTCTTGGCCATATCACTGTTTGTAATTCAGCCGATAATGTTGCCTCTA
CGTAAGCCTACGTAAAACATCTACGTAAACTTCCTAACTAACTCTTCTCTCCCCCTGATTTTCAAAAAGGTAGGCCCCTT
CCTTCCCAATCCTCCAATTCTAATCCACCAGCTGGCTGATTACGTTAAACACGTAACACAAATTTCGTAGGTGTAGCATT
TCCGGTAATTCA--------------------------------------------GCTGTTCTAGTTCTTTTTTCAAGG
GGGAAACCAGTTTTCTTTGTGGATAAA-AAACACGTTTTTTTAGATCACCGTACAAACGCATGCACTCACAAGTCACAAC
ATGCAACACACTCATACGCTATGAAAGCACACATGAATACACTACCCCTATGAGCACCTTTAAGAAATTGAGCCGACAAG
ATCTTGTTATTGACGAAATCGACACAGACATCTCAAAGTCGACGAACATGTCATACAAGTGAATGATTTGTGCCAAAAAC
CTTGAAAATATGCGACCACATGTGCCAATCATA-GACTTGAATCCTGGTGTGCTGATATCACCACAAGAAATCAAACCAT
GTACATAAAGGATTTTCATTCAATCGTCATATCAAAGTGATACAACCGCACTGAGTGTAAAACCGTCGTCAGCATAACTA
GATGTGCACAAACATACTT-ACACAGACAAAAA-----------------------------------------------
--------------------------------------------------------------------------------
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>SNPs
-------------------------------S---------------S--------------------------------
--------------------------SSSSS----------S------------------------SSS-----------
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-----------------------------------------------SSS-SS-SS----S-S-----------------
-------------------------S---S--------------------------------------------------
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---------------------------------------------------------------------------S----
-SS-SSSSSSSSSSS---SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------------------------------------S------S-------------SSSS-----
--------SS---------------------------------------------S-----S------------------
-------------------------------------------------S---------------------------S--
------------------------------------------S---------S---S-----------------------
--------S----------------------------S------------------------------------------
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--------------------------------------------------------------------S-----------
----------------------------------S-----------------------------------------S---
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-----------------------------------------------S--------------------------------
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-----------------------------------S---------S----------------------------------
--------------------------------------------------------------------------------
-----------------------------SS------------------------------SS-SSSSSS-SSS------
----------S----S---------S----S---------------------------------S---------------
S--------S-------------------S--------------------------------------------------
-------------------------------------------------S-----S-S--S-------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------------S--S-S--------------------S--------S----------S-----
-----SSSS-------------------S------------SSS----------------S------------S------
-----------------------------------S----------------------------------S------S--
-----S----------------------------S-------------------S-------------------------
------------------------------------------------SS------------------------------
---------------------------------------------S---------------S---S--------------
S-------------------------------------------------------------------------------
-----------S-------------S------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------SS---S----------------------------------------------
--------------------------------------------------------------------S-----------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
------------S-------------------------------------------------------------------
------------------------------------------------------S--S----------S-----------
----S---S-------------------------------------S---------------------------------
----------------------------------S--------------------S-----------------------S
---------------------------------------------------------------S----------------
-----------------S-------------------------------------S------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
----------------------S---------------S-----S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------S-------S------------------S------------------S--------------
---------------S------------S----------------------S----------------------------
--------------------------------------S---S-------------------------------------
------------------------------S--SS---------------------------------------------
----------S-------------S---------------------------------------S---------------
--S--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_2874
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------------------------------------------------------AGGTCGGTTTGGTTCCATCC------
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>reverse_5250
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-------------------------------------------------ATTTGCGAGCAAGAGCATGG-----------
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>forward_2875
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-------------------------------------------------------GGTCGGTTTGGTTCCATCCA-----
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>reverse_5562
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-----------------------------------------AAATTGTGTTGCGTGCATCG-------------------
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>forward_5472
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------------TCCACGTTGTCCTGTGCAAA------------------------------------------------
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>reverse_7096
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-------------------------------------------------------CCGTCTGTTTGCTGTTGCAG-----
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>forward_5474
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--------------CACGTTGTCCTGTGCAAACG----------------------------------------------
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>reverse_7666
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-----------------------------------------------------------------TCCACAACATGCAAC
ACACTC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
