>input_sequence_35885
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-----------------------------------------------------ATGGTAAAGCAAAGAGATAAACCAGTA
CATCTAGAAGGTTTGGAACCGAAAGAATATTGGACCCTTTTTCTAGCATGTGTTTTTGGTGACACTAATCAACGAAATAA
TGATGACAACTTAATTGAAATCGGGGAAAAAATTGTGGAAAAATTGAAGGGTTCTCCTCTTGCAGCAAAAACCGTGGGTA
GATTGCTGAGAAATAACA-TATCTGTAGATCACTGGACAAGAGTTCTTGAAAGCAAAGAATGGGAATCACAGACCAATGA
GCACGATATTATGCCTGCATTGAAAGTTAGCTATGACTACCTACCTTTTCACCTGCAACAATGCTT-TTCCCCATGTGCA
TTATTTCCGGAAGATTACAAGTTTGATAGTGAGGAGCTGATTCACTTTTGGATAGGACTTGACATTATACATCCAGATAA
TAGAATCAAAAGAATTGAAGATATTGGGCGGAACAACTTGAATGACTTAGTTAATTATGGATTTTTC-AAAATAGGAACA
GGTGATTCAGGTAAACACTATGTTATTCATGACCTGCTGCATGATTTAGCATTGAAGGTTTCCTCACAAGAGTGTCTACA
TATATCTTCCTCTAGCCCAAGAGCTGTAGAAATTGCACCATCTGTTTACCACTTGTCCATTAGTATGAGTGATCCATCCA
ATAGTGAGGATGGAATTGTCAAAGAAAATTTTATGAAAGAACTGAATAAAACAAGAAAGATAC--TGAAAACTGAGAACC
TACGCACTTTGATGTTGTTTGGAGATTACAATGCAAGCTTTGTTCGCATATTCAGTGATCTATTCAAAGATGCAAAATCT
TTGCGTGTTGTCTATTTGTCAACAATGTTCTACCATGTGGAATTTCTATTGCACAACTTTTCGGATCTTGTCCATCTCCG
CTACCTACGGCTTGTGTCAAAGTATTATAGTAAAAAACAGGTACCAAAGAGTATACCAAGATTTTATCAGTTAAGGGTGC
TAGACATAAGTGACTGGGAGGGTGTTCATAGTTTGCACGAAGAAATGGGTAACCTTGTAAAATTGCGCCATTTCCTTGTC
CCATCG---------------------TATGAATTCCATTCGAATATTTGTAATGTGGGAAAACTAGAGAACTTACAAGA
GCTAAAGAGATTTAAAATTAAGCAAGAAAGTAATGGGTTTGAATTAATGGAGCTGGGGAAACTAGAAGAGATAGGAGGAT
CACTTCACATTTGCAATCTTGAAAATGCACTAGCAAATGAAGCGCATGAGGCAAAACTCTTACGCAAAAACTGCTTGCAG
CGATTAACACTCAGTTGGAAGAAAGGCCGGTCAAATACGAGTCCTGACGAAGAAGATCAATTACTTGAGAGGCTACGGCC
ACATAGCAATCTTCATGAGCTATGCATTGATGGGCATGGAGGCTCTACTTGCCCTACATGGCTGGGCAAAAATCTGTTGA
CCAAAGGTCTGGAGGCTCTCTGCCTAGACAGCGTAGCTTGGAAACACCTTCCACCCCTTGGAGAGTTATATGTGATTGGT
CAATCTGTAGAAGAGCGTGAGTCTGGAGAAGAGTTTTCCAGTTGCATCACAGGC---CCATGCTTTCGTAACTTAAAAAG
GCTAGAACTAATTGGGTTGCCAAGATTAAGAAGATGGGTAGCAAATGAAGTTTGCCCTTGGTACTTCTCACTTATAGAGG
TACTCATTGTGAAGGATTGCCCTGAACTAACTGAGTTACCATTTTCATCTTATACTAGTTGTTACCCCTTGGAAACAGAT
TCATGTGTGACTTGGTTTCCTAGGCTAAATGAGCTTAAAATTGAGGATTGCCGAAACCTGTTGTCACTGCCTCCTATTCC
TTATAGTGACGCTTTGTGCTCTGTTACACTGAC---ACGTGTGGGAAGAGGTCTGGAGGAGTTACGTTATTCAAGCAAAA
CATATCACTCTTTGAGCATAGAAGGAAATGGTGATATGCATAGCTTAGATGAAACGGTTTTGGC-ATTCCATAATTTAAC
CCAACTACAAATACTGTGTATCAAAAATTGCCCACCTCTGGCTGAAAAACACCTTCAAATGCTAACCATGTTGGAGACCC
TGGAAATAAATGGTTCTAGCAATTTATTCCTGCCGTTAGCAAGAAGTGACACCATA---TGGCAGCTTCCAGTTACCAGT
TTAAAATTATGGAGGTGCAATTTTAGTG---GGAAGGAAGTGACATGCCTACTCACTCATCTCCCTGAGCTCTTG-GCTT
GA------------------------------------------------------------------------------
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---------------
>chr1D_1_TraesCS1D01G099100
GCATCCAGGACGAGCTCGACGGCACCTTCGAGACCGCCGACCACGACGACCGCGGGTGCGTCCATAACCTTGTCCGCGAT
GCTCGGCATACGGCCAAAGCTGCCGCCAAGCTGCTTGGGTGTGGCTCGTGCTCATCTGCTGCTGCAGGTGACACTTACAA
ACCTGATGAGTCATGCATGTGCGTGCGCCGGCTCGCTTCCCGTACTCGTACCACCGTGCACGACTTCGGTAATCGACTCC
TCTGCTCTTCTTCTCTATCTGTTCATGAAGATGATGATAGTGACGATAGTGATGATAGCAAGCATGCC------CCTAGA
GTACCAAAGCTGAAATTTGATAGGGTGGACGTCTCTGTCAGAATGAAATGCATCGCGGACGAACTAAAGCCCCTGTGTGC
TAAGGTCTCCACCATTCTTGGCCTAGAACTGTCGGGCTCTGTCAGTACCGAGCTACGATTACTGCGTTCTAGTGGTATTG
GC---AATGTTGCCTCTACAGGTAGACCCATAACCACCTCACAAGCTTTAGAGCCTACGTTGTATGGGAGGGAACCCCAG
AAGAACACAATTATTGAGCATATTACAAACGATGAATACATTCATAAAAAACTCACGGTCATCCCTATAGTGGGTCCTGG
GGGCATAGGAAAGACAACTCTAACTCAATACATATATAACAACAAAGAAGTGCAAGACCATTTCAAAATTCGAGTTTGGG
TATGTGTATCTCTTGACTTTAGTGTGCATAAGTTGACACAAGAGATTGTGAGCTCCATCCCTAAAGCCGAA---GACGAA
AAAGAGAAAGCAGATAGTGAGGTGCATAACTTGGACCAACTTCAGAAATTAATTGAAAAA-GACTCAAAAATAGAAGATT
TTTACTTGTTTTGGATGATATATGGAAATATGGTAATGAAGACGACTGGAAAAGATTTTTAGTTCCCTTTCAGAAAGAGC
AAGGAAACGGTGACACAATTCTGGTCACAACTAGATTCCTTGAGGTAGCTGAAATGGTAAAGCAAAGAGATAAACCAGTA
CATCTAGAAGGTTTGGAACCGAAAGAATATTGGACCCTTTTTCTAGCATGTGTTTTTGGTGACACTAATCAACGAAATAA
TGATGACAACTTAATTGAAATCGGGGAAAAAATTGTGGAAAAATTGAAGGGTTCTCCTCTTGCAGCAAAAACCGTGGGTA
GATTGCTGAGAAATAACA-TATCTGTAGATCACTGGACAAGAGTTCTTGAAAGCAAAGAATGGGAATCACAGACCAATGA
GCACGATATTATGCCTGCATTGAAAGTTAGCTATGACTACCTACCTTTTCACCTGCAACAATGCTT-TTCCCCATGTGCA
TTATTTCCGGAAGATTACAAGTTTGATAGTGAGGAGCTGATTCACTTTTGGATAGGACTTGACATTATACATCCAGATAA
TAGAATCAAAAGAATTGAAGATATTGGGCGGAACAACTTGAATGACTTAGTTAATTATGGATTTTTC-AAAATAGGAACA
GGTGATTCAGGTAAACACTATGTTATTCATGACCTGCTGCATGATTTAGCATTGAAGGTTTCCTCACAAGAGTGTCTACA
TATATCTTCCTCTAGCCCAAGAGCTGTAGAAATTGCACCATCTGTTTACCACTTGTCCATTAGTATGAGTGATCCATCCA
ATAGTGAGGATGGAATTGTCAAAGAAAATTTTATGAAAGAACTGAATAAAACAAGAAAGATAC--TGAAAACTGAGAACC
TACGCACTTTGATGTTGTTTGGAGATTACAATGCAAGCTTTGTTCGCATATTCAGTGATCTATTCAAAGATGCAAAATCT
TTGCGTGTTGTCTATTTGTCAACAATGTTCTACCATGTGGAATTTCTATTGCACAACTTTTCGGATCTTGTCCATCTCCG
CTACCTACGGCTTGTGTCAAAGTATTATAGTAAAAAACAGGTACCAAAGAGTATACCAAGATTTTATCAGTTAAGGGTGC
TAGACATAAGTGACTGGGAGGGTGTTCATAGTTTGCACGAAGAAATGGGTAACCTTGTAAAATTGCGCCATTTCCTTGTC
CCATCG---------------------TATGAATTCCATTCGAATATTTGTAATGTGGGAAAACTAGAGAACTTACAAGA
GCTAAAGAGATTTAAAATTAAGCAAGAAAGTAATGGGTTTGAATTAATGGAGCTGGGGAAACTAGAAGAGATAGGAGGAT
CACTTCACATTTGCAATCTTGAAAATGCACTAGCAAATGAAGCGCATGAGGCAAAACTCTTACGCAAAAACTGCTTGCAG
CGATTAACACTCAGTTGGAAGAAAGGCCGGTCAAATACGAGTCCTGACGAAGAAGATCAATTACTTGAGAGGCTACGGCC
ACATAGCAATCTTCATGAGCTATGCATTGATGGGCATGGAGGCTCTACTTGCCCTACATGGCTGGGCAAAAATCTGTTGA
CCAAAGGTCTGGAGGCTCTCTGCCTAGACAGCGTAGCTTGGAAACACCTTCCACCCCTTGGAGAGTTATATGTGATTGGT
CAATCTGTAGAAGAGCGTGAGTCTGGAGAAGAGTTTTCCAGTTGCATCACAGGC---CCATGCTTTCGTAACTTAAAAAG
GCTAGAACTAATTGGGTTGCCAAGATTAAGAAGATGGGTAGCAAATGAAGTTTGCCCTTGGTACTTCTCACTTATAGAGG
TACTCATTGTGAAGGATTGCCCTGAACTAACTGAGTTACCATTTTCATCTTATACTAGTTGTTACCCCTTGGAAACAGAT
TCATGTGTGACTTGGTTTCCTAGGCTAAATGAGCTTAAAATTGAGGATTGCCGAAACCTGTTGTCACTGCCTCCTATTCC
TTATAGTGACGCTTTGTGCTCTGTTACACTGAC---ACGTGTGGGAAGAGGTCTGGAGGAGTTACGTTATTCAAGCAAAA
CATATCACTCTTTGAGCATAGAAGGAAATGGTGATATGCATAGCTTAGATGAAACGGTTTTGGC-ATTCCATAATTTAAC
CCAACTACAAATACTGTGTATCAAAAATTGCCCACCTCTGGCTGAAAAACACCTTCAAATGCTAACCATGTTGGAGACCC
TGGAAATAAATGGTTCTAGCAATTTATTCCTGCCGTTAGCAAGAAGTGACACCATA---TGGCAGCTTCCAGTTACCAGT
TTAAAATTATGGAGGTGCAATTTTAGTG---GGAAGGAAGTGACATGCCTACTCACTCATCTCCCTGAGCTCTTG-GCTT
GAATATATGGGGAAGTGAGAAGATAACACGGTTGAATGTGGAGGCCGA------GCATCAACAAACGGCAACATCGCATT
CACTGCCATCTTCTTCAGCTGCTATTGAATTGCAGGATACACATGGAA------CAGATGAGCAACTAGAAAGAGTGCAG
GAGGTGGAGGAAGAGGGAGTAGCATCATTAGAGGAGGTTGTTGTAGAACAAGAAGAAGACGATGATGGGCTGCTGCTCCT
ACCGGCCCATCTCTCCCGCTCTCTCAGGGAGTTGATCTTGAAGGGCTGTCGAGAGCTTATTCTGGCTGCCAAGAACCACG
AGACAGG---AGTAGGAGGTCTGCAAGCCATGCACTCCCTCAAGAAAATAATAATAGAAGGTTGCCCCAAGTTCCTGTCC
--------GATCTCTCTTCCTGTTGCCCTTTCCCATCCTCCCTGCAACGCCTCTTCCTTGAAGATCCTATGGGAAACATG
GACACGCTAGTGCTTCTCTCGAACCTCGCCTCTGTCGAGAACTTATGCATTAATTG---TTTGGGTGAGGATTTAAGATG
TGAGGGCCTGTTGCATCTTCTTACACAGGGCCAGCTCACCGCATTACAAGTCCGCGGCACCCCCAAATTCTTTGCTGATT
GGGA---------TCC------CGCACGGGAGCTG------CAGGGCGAGCAGCTGCTTCCTTTCCCAAAACTGCAGGAA
CTCGAGACGGATGAAGTGGCAGGAGTCCTTACCGCGCCCATCTGCCGCCTCCTCTCTTCCTCCCTCACCAAATTATCTTT
TGAACACAACAAAGAGGTGGAGTGCTTCACCAAGGAGCAAGAGGAGGCCCTTTCCCTCCTCAGGTCCCTCCAGGACCTCC
AATTCCAGTGGTGTCCTAAGCTGCGGCGCCTCCCAGCAGG------GCTAAACAAGCTCACCAACCTCAAGAAATTATTG
ATCTGGAGACCTGGAGCCATCCTGTCGCTGCCAAAGAATGGCCTCCCTGGCTCGCTGCAAGAGTTAGTTGTCGACGATTG
CATCAAGCTGCGGTG
>chr3A_163
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTGATGAGTCCTATAAGAGTGTGCGCCACCTCGCCTCCCGTGCTCGTACCACCGCCCATTCCTTTGGTAAACAATTCC
TCTGCTCTTCTTTTCTACCTGTTCATCAAGATGATGA------------------TAGTAAGCATGCC------CCTAGA
GAACCAAAGTTGAAAATTGATAGGGTAGATGTCTCTACAAGAATGAAATATATCGCAGATGAACTCAAGCCCCTATGTGC
TAAGGTCTCCAACATTCTTGACTTGGAATTGTCGGGCTCTGTCATTGCCGAGCTACGGTTACTGGGTTCTAACCGTGGCA
TTAGTAGTGTTATCTCTACAAGTAGACCCATAACCACCTCACAAGCTTTAGAGTCTACATGGTATGGGAGGGACTCCCAG
AAGAACACCATTGTCGAGCATATTACAAAGGGTGAACACATTCATAGAGATCTCGCTGTCATTCCTATTGTTGGTTCTAG
GGGCATAGGAACGACAACTCTCGCTCAACACATATACAACATCAAAGAAGTGCAAGGTCATTTCGAAATAAGACGTTGGG
TGTGTGTATCTATCGACTTTAGTGTGTATAGGTTGACAAAAGAGATTGTGCGCTCCATCCCTAAAGCACAAGGTGAACAA
AACGATAGAGCGGATAATGAGGTAGAAAACTTGGACCAACTTCAGCACTTAATTGAAAAAAGGCTGAAAAATAGAAGATT
TTTACTTGTTTTGGATGATATATGGAAATATGGTAATGAAGATGAGTGGAAAAGATTTCTGGTTCCCTTTAAAAAACAAC
AAGGAAATGGTGATACAATTCTAGTCACAACCCGATTCCTTGAAGTAGCTACAATGGCTAGGAGAGGGGATAAACTCTTG
GAACTAGAAGGTTTGGAGTGCGGAGAATATTGGAACCTTTTTCTAGCATCTGTGTGTGATAAAATTGATC------ATGA
TATGGACTTAACAA---AAATCGGGGAAGAGATTGTGAAAAAATTGAAGGGTTCTCCCCTTGCAGCAAAAATCGTGGGTA
GATTGTTGAGAAAAAAGATTAACTGTAGATCATTGGACAAAAGTTCTTAAAAGTAAAGAATGGGAATCACAAACCAGTGA
TGATGATATCATGCCCGCGCTGAAGCTTAGCTATGACTACCTCCCTTTTCACCTGCAACAATGCTTTTTCCTCTTGTGCA
TTATTTCCAGAAGATTACAAGTTTGACTGTGAGGAGCTAATTCACTTCTAGATAGGACTTGGCATTCTATGCCCAGATAA
TAGAATCAAAAGAACTGAAGATATAGGGCGTAACAACTTGAATGACTTGGTTAATTATGGTTTTTAA-AAAAATGAAAGA
GGTGATTCAGGTACACACTATGTTATGCATGATCTGCTACATGATTTAGCATTGAAGGTTTCCTAACAAGAATGCCTACA
TATAGCCTTTTCTAGCCCAAGAGATGTAGAAATTGCACCATCTGTCTATCATTTGTCCATTAGTGTTAGTTATTCAGCCG
ATAGTAAGGATGGAGTTGTTCAAGAAAAATTTAGGAGCGATTTGGGTAAAATAAGGGATGTATTTTGAATTTTGAGAACA
TGCACACTTTGATGTTGTTTGGTAAATATGATGCAAGCTTTGTTCGTATATTTGGTGATTTATTCAAAGATGCAAAATCG
TTGCGTGTTGTATATTTGTCAACAATGTACTACCCTGTGGAGTCTCTATTGTACAACATCTCAAAACTTGTCCATCTTCG
CTACCTACGGGTTGCGTCAAAGCGTGGCACTCGAGAACATTTACCAAGGAGTATATCAAGATTTTATCAGTTAAGGGTGC
TAGACATAAGTGGCTGGCAGGGTCCTCATAGTTCGCCCGGGGATATTGCAAACCTTGTAAAATTGCGCCATTACCTTGTC
CCACCTTGCGAATACGATTCGAATATCTATAAATTACATTCGAATATTTGTAATGTGGGAAAACTACATAACTTACAAGA
ACTACAGAGTTTTGAAGTTCGAAGAGAAACTAGTGGCTTTGAACTAAGGGAGCTGGGGAAACTAGAAGAGCTAGGAGGAT
CACTTGGCATTTATAATCTTGAGAATGCATTAGCAAATGAGGCACGTGAGGCAAAACTGTTAAACAAAAGCCGCTTGCAG
AAATTAACACTCAGTTGGAA---------ATCTAATAATTTGCCTGACGCACAAGGTCATTTGCTTGAGAA-CTACGGCC
CCATAGCAATCTTTATGAGCTATGCATTGATGGTCATGGA----------------------------------------
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>chr3D_168
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-------GAGTCCTGTAAGTGTGTGCGCATCCTCGCCTCCCGTGCTCATACCACAACATATGCCTTCGGTAAACGATTCC
TCTGCTCTTCTTTTCTACCTGTTCGTGAACATAATGA------------------TAGAAAGCAAGCCTGTAGTCCTACA
AAACCAAAGTTGAAATTTGATAGGGTGGACGTCTCTACAAGAATGAAATATATCACAGATGAGCTAAAGCCCATGTGTGC
TAAGGTCTCTACCATTCTTAGTCTAGAGTTATCGAGCTC------------------------------TACCCATGACA
TTAGTAATGTTGCCTCTACAAGTAGACCCATAACCACTTCACAAGCTTTAGATCCTACATTATATGGGAGGGAACCCCAG
AAGAACACCATTATCCAGGACATTATAATGGGTG------------GAGATCTCACCGTTATTCCTATAGTTGGTCCC-G
GGGTATAGGGAAAACAACTCTCACTCAGTACATATACAATAGTAAAGAAGTGCAAGATCATTTCGAAATAAGAGTCTGGG
TGTGTGTATGTTTCGACTTTAGTGTGTATAGGTTGACACAAGAGATTGTGTGCTCCATCCCTAAAGCAGAAGGTGAACAA
AACGATAGAAAAGATAATGAGGTACAAAACTTGGACCAACTTCAGAAATTAATTGAAAGAAGGCTGAAAAATAAAAGATT
TCTACTTGTTTTAGATGATATATGGAAATATGGTAATGAAGATGAGTGGAAAAGATTCATAGTTCCCTTTAAAAAACAGC
GAGGAAACGGTGATACAGTTCTAGTCACAACCCGATTCGTCGAAGTAGCTGAAATGATTAGGAGAGGAGATAAACTGTTC
GAACTAGAAGGTTTGGAGCCGAAAGAATATTGGAGCCTTTTCCTAGCATGTGTTTTTGATGAATTTGATCAACAATATAA
TTTGGACTTGATGA---AAATCGGGGAAAAGATTGTCGAAAAATTGAAGGGTTCTCCCCTTGCAGCAAAAACTGTGGGTA
GATTGTTGAGGGAAAAAC-TAACTGTAGATCATTGGACAAAAGTTCTTGAAAGTAAAGAATGGGAATCACAGACCAGTGA
TCATGATATCATGCCCGCGCTGAGGCTTAGCTATGACTACCTCCCTTTTCACCTGAAACAATGC-TTTTCCTCTTGTGCA
TTATTTCCTGAAGATTACAAGTTTGACTGTGAGGAGCTAATTCACTTCTGGATAAGACTAGATATTTTACTCCTAGGTCA
GAGAACCCAAAGAGTTGAAGATATAGGACATAACAACTTGAATGACTTGGTTAATTATGGATTTTTC-AAAAAAGAAACA
GATGATTCAGGTACACACTATGTTATGCATGATCTGCTACATGATTTAGCCTTGAAGGTTTCCTCACAAGAATGTCTACA
TATAGCTTTTTCTAGTCCAAGACATTTAGAAATTGCACCATCTGTCTACCATTTGTCCATTAGTATGAGTGATTCGGCTG
ATAGTAAGGATGGAGTTGCGGGGAAAAAATTTAGGGGAGACTTGGATAAAATAAGGAACATAC--TGAATTTTGAGAACT
TGCGCACTTTGATGTTGTTTGGAATATATGATGCAAGCTTTGTTCGTATATTCAGTGATTTATTCAAAGATGCAAAATCG
TTGCGCGTTGTATATTTGTCAACAATGTACTACCCTGTGGAGTCTCTATTGCACAACATCTGAAAGCTTGTCCATCTTCG
CTATCTACGGCTTTTGTCAATGTTTGGTAGTTATCAAAGTGTACCAATGTTTG--TCAAGATTTTATCATTTAAGGGTGC
TAGACATAAGACAGTGGTATGATGATCGTAGTCTGCTTGCAGATATGGCTAACCTTGTAAAATTGCGCCATTTCCTTGTT
GAAACT---------------------TATAAATTCCATTCGAATATTTGTAATGTGGGAAAACTACATAACTTACAAGA
ACTACAGAGTTTTGAAGTTAGGAGAGGAAGGAGTGGTTTTGAACTGAGGGAGCTGGGGAAACTAGAGGAGCTAGGAGGAT
CACTTGCCATCTATAATCTTGAGAAAGCATTAGTAAATGAGGCACATGAGGCAAAACTATTATACAAAAACCGCTTGCAG
AAATTAACACTAAGTTGGGAGGAAGGCCGATCTAATGTGAGTCCTGACTTAGAAGATAAAGTACTCGAAAGCCTACGGCC
ACATAGCAATCTTCATGAGCTATGCATTGATGGGCATGGAGGCCTTACTTGCCCTACATGGCTGGGTACAAATATGTCCA
CCAAAGGTGTGGAGGGTCTCATCCTAAAGCACACAAATTGGGAATTCCTTCCACCCCTTGGAGAGCTATATCTGATT---
---------------CGTGAGTCTGGAGGAGAGTATTTAGGTTGCATCACAGGC---ACATTCTTTCGTAACTTGAAAAT
GCTAAAACTCATTGGGTTGCCAAGATTTAGTAGATGGGCAGCAAATGAAGTTTGCCCTTGGTACTTCTCACTTCTTGAAG
TACTCGTTGTGAAGGGTTGTGCTGAACTAACTGAGTTGCCGTTCTCATCTAATACTAGTTGCTACCCCTCGAAAAGAGAT
TTGAATTTGACTTGGTTTCCTAGGCTAAAAAGGATTAAAATTGTGGATTGCCCAAAACTTCGGTCGCTGCCTCCTATTCC
TTGTAGTCACACTTTCTGCTCTGTTAGACTACAGGGACTTGTAGGACGAGGTCTGAAGGTGTTAGATTACTCACACGAAT
CAAG---CGATTTGAACATAGAAGGAAGTGATGCTCTGCATAGCCTAGATGAGACGGTCTTGGTGGTTCCATAATTTAAC
CCAACTACAAAGTTTGTATATTAAAAATTGCCCACCGCTGGCTGAGAAAGACTTTCAAATGCTAACCTCGTTGAAGAACC
TCGAAATAGATGGTTCAAGCATTA---------TGTTAGCAAGAAGCGACGCCATA---TGGCAGCTTCCAGTTAACATC
TTAGTGATACGGTGGTGGCGTGGTA---GCTGGAAGGAACTGACACGTCTACTGGCTCATCTCCCTGAGCTCTCTTGCTT
GTGTATAGTTCTGTGTGAGATGTTAACAGGGTTGGGCGTGGAGGCCCATCACGTGCAGCAACAAACGGCAGCATCTT---
------------------CTGCTGTTCAATTGCAGCAGGATACGTATGGAACAGCAGATCAACAACAAGAAATAGCGCAG
GAGGTCGTCGCTGTGGAAGAAAAAGAAGGAGAAGAAGACG---------AAGAAGAAGATGACGATGGGCTGCTGCTCTT
ACCGTCCCATCTCTCCTACTCTATCCAGGAGTTGAGGATCAACCATTGTCGAGAACTTGTCCTGACTGCCCTCAAGAGTA
GCCGCGGGACAGGAGGAGGTCTGCAATCCATGGGCTCCCTCAGGAGAATACAAGTAGTAGATTCCTGTCGTCCTACAAGG
CCTCCTCGGATCTCTCTTCCTGTTGCCCTTTCCCGTCCTCTCTGCAATCCCTCATCCTTGGAGGTCGTATGGAGGGCATT
GAGACGCTGGCTCCCCTCTCCAACCTCACTTCTCTTGAGAAGTTAAGCATT---TGGGAATTGGGGGATGATTTTAGGTG
CGACGGCCTGTTGCCTCTCCTTACCGAGGGCCAGCTGAACACATTACAAGTCCGCAACACCCCGGTTTTTTTTGCTGGCA
TTCAGGGTCCCGCTCCTGCTCCCGCACAGGCGGT------------------------------CTCCAAACTGCAGAAA
CTCGATACGGACGACATCGCACAAGTCCTTGCTGCGCCCATCTGCGGCCTCCTCTCTTCCTCCCTCACCGAATTATACTT
TTGTAATGACAACGAGGTGGAGCGCTTAAGCAAGGAGCAAGAGGAAGCTCTTTCTCTCCTCACATCCCTCCAGGACCTCC
AATTTGTGTGCTGCAGCAAGCTGCGGTGCCTCCCCGCAGG------GCTTCACAAGCTCACCAACCTCAAGAGATTGAAT
ATCACTCTCTGTCCAGCCATGAGGTCACTGCCAAAGAATGGCCTCCCCACCTCGCTGCAAGAGTTCGATGTCCACGGTTG
C--------------
>chr1A_584
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--------------------------------TGAATTCATTCATCGAGACCTCACCGTCATTCCCATAGTTGGTCTTGG
GGGCATAGGAAAAACAACTCTCACTCAGTATATATACAACAGCAAAGAAGTGCAAGCTCATTTCAAAATAAGAGTTTGGG
TGTGTGTATTTGTTGACTTTAGTGTGTATAAATTGACACAAGAGATTGTGAGCTCTATCCCTTAGGATGAAGACAAACAA
AATGACAAAGCAGATAACGAGGTACAAAACTTGGACCAACTTCAGAAATTAAATAAAAGAGGACTAAAAAATAGGAGATT
TTTACTTATTTTGGACGATATATGGAAATATGGTAATGAAGACGAGTGGAAAAGATTTTTAATTCCCTTTCAAAATGGGC
AAGGAAATGGTGATACTATTCTAGTCACAACTCGATTCCTTGAGGTAGCTGAAATGGTAAAGAAAGACGATAAAGCATTA
CAACTAGAGGGTTTGGAGCCGAAATAATATTGGATCCTTTTTCTAGTATGTGTTTTTGATGAAACTAATGAACGATATAA
TGATAATAACTTACTTGAAATCGGCTAGAAAATTGTGGAAAAATTGAAGGGTTCTCCTCTTGCAGCAAAAACCGTGGGTA
GATTGCTGAGAAAAAATA-TATCTGTAGATCATTGGACAAGAGTTCTTGAAAGCAAAGAATGGGAATCACAGACTAGCGA
TCATGATATTATGCCCGCATTAAAGCTTAGCTACGATTACCTCCCTTTTCACCAGCAACAATGC-TTTTCCTCGTGTGCA
CTATTTCCGGAAGATTACATGTTTGACCGTGAGGAGCTAATTCATTTCTGGATAGGACTTGAAATTATACACCTAGATCA
TAGAATCAAAAGAATTGAAGATATAGGGTGTAACAACTTGAATGACTTAGTTAATTCTGGATTTTTTTAATAAAGAAACA
AGCGATTCGTATGAATACTATGTTATGCATGACCTACTACATGATTTAGCATTGAAGGTTTCCTCACAAGAATGTCTACA
TATATCCTCTTCTAGTCCAAGAGTTGTAGATTTTGTACCATCTGTCTATCACGTGTCCATTAGTATGAGTGATCACGACG
ATAGTGAGGATGGAGTTGCGAAAGAAAAAATTAGGAAAGAATTGGATAAAATAA--------------------------
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---------------
>chr3A_2397
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-----------------------------------ATGGAGGCCCTAGTTGCCCTACATGGCTGGGTACAAATCTGTCCA
CCAAAGGTCTGGAGGCTCTCCGCCTGGACAGTCTAGCTTGGGAACAGCTTCCACCCCTTGGAGAGCTATATCTGAAT---
---------------CGTGAGTCCGGAGAAGAGTATTTGGGTTGCATCACAGGCGGCACATGCTTTCGTAACTTGAACAG
GCTAGAACTCATTATCTTGCCAAGATTTAGTAGATGGGCAGCAAATGAAGTTTGCCCTTGGTACTTCTCACTTATAGAAG
TACTCGTTCTGAAGGGTCGCCCTGAACTAACTGAGTTACCGTTTTCATCTTATATCTGCTGCCCACC---GGAAAGAGAT
TTGAATGTGACCTGGTTTCCTAGGCTAGAAACAATTGAAATTGAGGATTGCCCAAAACTCTTGTCTCTGCCTCCTATTCC
TTATAGTCCCATTTTGTGCTCTGTTAGACTGCA---ACTTGCAGGAAGAGGTCTGAAGTATTTACATTACTCACACGAAT
CAAG---CTGTTTGAGAATAAAAGGAAGTGATGCTCTGCATAGCCTTGATGAGACAGTCTTGGT-GTTCCATAATTTAAC
CCAACTACAACGCTTGATTATTGAAAATTGCCCACCTCTGGCTGAGAAACACCTTCAAATGCTAACCTCGTTGAAGACCC
TCCAAATAGAAGATTCAAACATTACACCCCAGCTGTCAGCAAGAAGTGACACCATTATGTGACAACTTCCAGTTAACAGT
TTAGCGATAGCCAGTGGTTGGAGTGGCGGCTGGAAGGAACTGACACGTCTACTAACTCATCTCCCTGTGCTCTCACGCTT
GTTTATATTTGGATGTGAGAAGATAACAGGGTTG----------------------------------------------
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---------------
>chr3D_3628
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-----------------------TGCCCTTTCCCGTCCACCCTGCAATCCCTCAGCCTTGGAGGTGGTATGGAGGGCATG
GAGACGCTGGCTCCCCTCTCCAACCTCACCTCTCTCGAGACGTTAAGCATT---CGGGATTTGGGGGATGCTTTTAGGTG
CGACGGCTTGCTGCCTCTCCTTACCCAAGGTCAGCTCACCGCATTAAGTGTCAGCGACAGCCCCAAATTCTTTGCTGGCA
TTCAGGGTCCCGCTCC------CGCACAGGCGGT------------------------------CTCCAAACTGCAGGAA
CTCGTGACGGATGACATCGCAACAGTCTTAACTGCGCCCATCTGCCGCCTCCTCTCTTCCTCCCTCACCAAATTATCCTT
TC---ATGATAAAGAGGTGGATCGCTTCAGCAAGGAGCAAGAGGAGGCTCTTTCTCTCCTCACCTCCCTCCAGGGGCTCA
AATTTGGGTGGTGCACCAAGCTGCGGTGCCTCCCAGCCATGAAGTCGCTGCACAAGCTCACCAACCTCAAGAGATTGGAG
ATCTGGTACTGTCCAGCCATGAGGTCGCTGCCAAAGAATGGCCTCCCCACCTCGCTGCAAGAGTTAGAGGTCTTCAGATG
CACCAACCTCCGGTG
>chr1A_3700
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--------------------------------------------------------------------------------
---------------CTCTCGAACCTCACCTCTCTCAAGAAATTAAGCATT---TG---TTTGGGAGAGGACTTACGATG
CGAGGGCCTGTGGCATCTCCTTACCCAGGGCCAGCTCACCACATTACAAGTCACCGGCGGCCCCAGATTCTTTGTTGGCT
TGGA---------TCC------CGCACAGGCGCTGCAGGTGCAGGGTGAACAAGAGCAGTCTTCCTCCAAACTGCAGCGA
CTCGAGACGGGCGACATCCCAGGAGTCCTTGCAGCGCCCGTCTGCCGCTTCCTCTCTTCCTCCCTCACCAAATTATCTTT
TAACTTCAACGAAGATGTTGAGCCCTTCAGAAAGGAGCAAGAGGAGGCTCTTTCCCTCCTCACGTCCCTCCAGGAGCTCC
GATTTGGGTGGTGCGATAAGCTGCGGCGTCTCCCAGCAGG------GCTAAACAATCTCACCAACCTCAAGATATTAGTG
ATCGAGGGGTGTCCAGCCATCCGGTCCCTGCCCAAGAATGGCATCCCCAGCTCGCTGGAAGAGTTGGGCTTCGAGGATTG
CACCAGCCTGCGTTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS----------S--S-S---S-------SS-----S------S------------SS--S-S---------S---S---
------------S----S-------------------SSSSSSSSSSSSSSSSSS---S---------------------
-S-------S--------------------------SSS----------SS-----S--S--------------------
----------------------------S---------------S-S----------S------S------SSS--SSSS
SS------------------S-------------------------------------S---------------------
--------S-----S--------------S-S--------------S-S-S-----S-----S--------S--------
---------------------S--------------S----S---------------S-----------SS---------
-S---------S--------------S----------------------------------------S--------SS--
--S--S----------S------S--S--------------------------------------S--------------
---------------------------------------------S--------------------------S-------
-------------S--------S---------S-----------------------------S--S-----------S--
--S--------------S----------------S-----------------------S---S------------S----
--------------------------------------------------------------------------------
-------------S--S---------------S-------------------------------------------S---
S--S-----------S--------SS----------------S----------------------------S-S------
--------------------------SS----------S--------S-----------------------S--------
------------------------S-----S-----------------------------------------S--S----
--------------------------S-----------S--------------------------------S--------
---------S-------------S---------------------S------------------------------S--S
--------------S----S--------S----S-------S--S------S---S--S----------SSS-------S
-S---------------------S-S--SS----------------S------------S-------------------S
-----------S----------------S-----S------S-S-------------S-S--SS-S-----------S--
-----------------------S-SS----S--S----S-------S-------S------------------------
-----------------S------S-----------S--S---S----S-------------------------------
---S-S------------------------S-----------------------------------S-S-----------
S---S----S---S--S---S-SS--------S---S------S---S----------------------S---------
-----SS-----SS--------S------S----------S--S--------------S---SS-------S--------
SS-------------------S-------S--S----S-----------S---------------------S--------
-------------------------------------------S----------------------S-S--------SS-
--------------------S-----------S--------S-----------------------S-----S-----SSS
SSSSSSSSSSSSSSS-------------------S--SSS-----------------S----------------S-----
---------S-----------------S--S-------S---------------------------------------S-
-----S---------S------------------------S--------------------S-------S-----S----
-SSSS------------------------SSS-S------------------S---S--S-----S--------------
-------S--S---------------S----SS-----S---S------------S---------S---S---SS-S--S
--SSSSS--S-----------------S--S--S-S--------S-------S-----S----S-S--------------
-----------SSS---S---S-----------------------S---------------------SS----S------
-S------S-------S----S-SS-SS--S--S-----------------------------------------S----
---SSSS--S-------SSS-SS---S------------S-----S-S-----S-------------------SS-----
-SS-----SS---S--------------S-----SSS---------S----------S------------S----SSSSS
SSSSSSSSSSSSSSSSSS-----S--S--------S-SSSSSSSSSSS-----------S-S----S-----S--S----
-----S-SS-SS-S--S--S-SS-SS-SS---S--S-SS-SSSSSSSSS----------S--S---------------S-
----S-----------SS----S--SS--------SSS-S--SSSS--------S---S-S---S-----SSS--SSSSS
SSSSS-------S-------------S-----SS--------S--S----SS-S---S--S--S-SSSSSSSSSSSSSSS
----------------------------------S------------SS----S------S--S--S-----SSSS----
--S-----S-SS-SS------------S-----S-------S---S-----SSS-----------S--------------
S-----------------S-----S----------------------------------------------------SS-
S--------------------------S--S---------------S--S--SSS--SSS---S-S-S------------
--------------SS-S--------------S-----------------------------------------------
-S-SS-----------------S------S------------------S-------------S-----------------
----SSS------SS---------------------------------------------------------S----S--
------S-SSS-SS--------S------------------------SS------------------S------------
--S---S--------
>forward_79
-----------------------------------------------------------GTCCATAACCTTGTCCGCGA-
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---------------
>reverse_1465
--------------------------------------------------------------------------------
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------------------------TGGGCGGAACAACTTGAATG------------------------------------
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--------------------------------------------------------------------------------
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---------------
>forward_83
---------------------------------------------------------------ATAACCTTGTCCGCGAT
GCT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>reverse_1906
--------------------------------------------------------------------------------
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-----------------------------------------------------------------TCTTGTCCATCTCCG
CTACC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------
>forward_447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACTGTCGGGCTCTGTCAGTA---------------------------------
--------------------------------------------------------------------------------
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---------------
>reverse_2281
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------AGCGCATGAGGCAAAACTCT--------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------
>forward_2086
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------GCCATTTCCTTGTC
CCATCG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------
>reverse_3227
--------------------------------------------------------------------------------
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--------------------------TGGGAAGGAAGTGACATGCC----------------------------------
--------------------------------------------------------------------------------
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---------------
>forward_2299
--------------------------------------------------------------------------------
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---------------------------------------AAGCGCATGAGGCAAAACTC---------------------
--------------------------------------------------------------------------------
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---------------
>reverse_3579
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------ATTCTGGCTGCCAAGAACCA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
