>input_sequence_35865
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------------ATGACGGTGGGGATGATCAACGCGAACCCGGTGGTGCACGAGCGGCCGGAGCGCGCCGCCCACCCCGC
GCACGCGGCGCTCGACGCGCTCGACGTCTTCGGTAACGGAAGCACAAACTTCCCCTCCCCGGATCCC----TCGGGTTCC
C--------TTTTT---CCTCCATTGATTGATTGGATTGGATTGGATTGGATTGCCTTCACCGACGGCGACGGGGGGACT
GACTGATTTGGGCG----CGTGCAGATACGGTGCGGGACATCAAGGACCCGGAGCACCCCTACTCGCTGGAGCAGCTCAG
C---GTGCTCTCCCAGGAGTCCGTCTCCGTCGACGAGAAGCTCGG--------CCACATCCAGTACGTATGCCTGCAAGA
ATGTGCTCAGC------TTTTCCGATGAGTAGGGTACCAAGTTATCAGATATTCAGATTAGTAGGGGCTGGGACTGGGAG
GC-----------------------------------------AGTGTTAATTTCCAATGGTAATTGCTTTGTTCCAGGC
GTG-------------TCATGCACTCATGCCCCTACC-----------------------ATCCCCTTCCAATCTTAGAA
GCCAGAATCATTGAGGGTTCCTACTACTTCAGTCGAAATGTGGAACGCGGCGTGCGCGGTTCGTACAGTCCGGCTAGCTA
GATTTACATTCGTGACA----------------------AGATAGT-TGCTACCATAAACGATCTACCAAGTCAATTTGA
CCATTCATATTATACTCCCTACATCTCAGTGGAGATTCAGAGTATGATCTTGAAGGCACGTTGCGTACAGAAATGGAGGG
TTGATTGCTTTTC--------TAGAATTAAATAGACGAATGTCTCATAGGATTGCTTGCTGCTTGGGATGTGATATCCCA
CTAGCTTTGCCGATCCTTATAGATTATGTCTTTATTCTGTATACGGACTCTGCGACCTTCAGGGTGCATTTGCTTACTGC
GGGCAAAGCATCCTCTGTTACTCTCGTTGTACAGTA--CAGTATGCTCGTACAAAATATGTTTTGTTT-CATGCAAGAAA
TTGACAAGCATCATTCAGCTTCAGTTTGTTGGGATCACTGTTCACACCTTAAAATTGCTT-GCAGGATAACCTTCACCCC
AACTGTGCAACACTGCAGTATGGCCACAGTGATTGGTCTGTGCCTCAGGCTTAAGTTGATGCAAAACTTCCCTCCGCATT
TCAAGGTGCTTATTACTATG-------------TTTCTGTATTCATGGTGTTCTGATTAAGTCAACTGGTTGAGACTTGA
GATGCTTTACATTATGTTTTATGTAGCATATGTGCCATCAGCAGCCATTATCCAAACTTTTAGAGTTTTCACGCATGTTC
ATTTTAGGCACTTCTGTTATCTTT--TGTCTCTGTGCAGTGAAATATGGGATAGTTGGAATGTCACAAATTTAACCATTA
GTTGATATTGTTTTTTTTCATCCCTCAAGACACTTGCCACATATGTAC-ACAGATGTGCATGTTTGCAAATTCGTAAACA
TTGTGTAGATCAAGAGAAGCAGACAGGCATCACAAGCCATACACCGTAAATTGTGTGCACACATAAAAGCTAGCTCCTAT
AACCTATAAGAATGTTAATAAACCTACTGAACCATTTATGATGGT-TTTTTTATCTGCCTCAGAGGAACCATAAATCATC
TCTGAGTCTTTTAAACTTATATTTTCTGTAGAATACTATTCATGGATCTGCAAGTTATGTAGTCAGGTGC-TTGTCTTCA
GTAGCACTGTTTAAGATTTGGAGCTAGGTATAATGCAAACGATCTCCAAAAAAAAAGTATATCATAATATTTTGAACAAA
ACCCCCTTCATAATAATTCCTGATGAATATATTATTCAGCTATTAAGCATTTCAGTGGGAATATGATTCCTTTTTTTGGG
GGGTTGTATGAATGTGCAGATTGACATTAAGGTTGCTCCAGGATCTCTTGCTAATGAAGAATCAGGTGCGTAAGATGACA
AA---TA-CCTAACTCATGGCTAAGCTTGTAGCTTTCAGTCTAATACGATTGGGCATTATAACTCATGACAGGGCAGCAT
TATCGATGGAACTACACAATTAATTCATTTTACTCTGTACCTGCTGAACTCTGCAAAACGAGAACGGCAGTTGTATAGCA
CAATTGTGTTTGAACAGCGCTACTTTAGTATGGTATGTCGTTATTAACATGCTGGATTGACAGTAAACAAACAGCTGAAC
GACAAGGAGAGGGTCGCGGCGGCGTTGGAGAACCCCAACCTCCGGCAGCTGGTGGACGACTGCCTCTGTTCGGATCATCC
GTCGTCGTACTAG-------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G413700
GCGTCAAGCCCATTCTGGTTGTACCCCGTGATGACCGCGTTCCACGAGACGATGGTCCGGTCCGGCATGCTCTCGAACAA
GGACAAAGCAAGGTCCATCCTCCCCAGACGGGCGTCGAGCGACACCATGGCGTTCCAGCTCGACACGCTCCGTGCCGGCA
TCCTCTCAAACACGGCCCTCGCTGTCTCGGCGTCCCCGCACTTGCCGTACATGTTGAGCACCGAGTTGGCCACGGGCACG
CAGCCGCCCAGGCCGAGCTTGACCGCGAAGGAGTGCACCTTCCGCCCGGCCCCGCCGGCCTCCGCGGCCGCGCACGACGA
GAGCACGTTGGTGAGCGTGAACTGCGTCGGCGCCAGCCCGTCCCCGACCATGTCCAGGAACGCCTCGACGGCCTCCCCGA
AGCGGCGGGCGCGGTTGAGCCCCACGACCATGACGGTCCACGACACGGCGTCGCGCTCGGGCATTTCCGCGAACACGGCG
CGCACGTCGGCCAGGCGGCTGGACTTGGAGTAGGCCGACAGCAGCGAGTTCCACGTGAACACGTTCCGCCGCGCCGCGGG
GACCTCGTCGAACAGGCGCCGCGCCTCCCGGAGGCC---------GCCTCCTCCGGCGGCGGCGTAGTAGGAGAGGAGGT
TGTTGCAGAGGTAGGCGCTGGCGAGGAGGCCGGCCTTGACGGCGCGCGCGTGGACGGCGCGCCCGGCGCCCGGGTTGGCG
GCCGCGCCGCACAGCCGCAGAAGGCGCGCGCAGTGGTCGGCG------------GCCGTCCGCGGCGCCCCGGCGGCGTG
GGGCTCCAGGGCGGCGGCATCTCGCATGTCGCGGGAAAGTTAG---------------------GCGGGCCGCGGCCCAC
CGGATTAGCAAAAACCGGCTCGCTCGCTCGCCCCACTTTTTCCCCAAACCGAAACTGCTAGCTCGCCAACACTTTTGTCC
TCTTGTCGCTCTCT------CTCTCGGCCGACGACCGAAGTCGCACGGCAGAGCACCGCCGC----CGCCGGGGAGGAGG
GGGAGGGGGGAGATGACGGTGGGGATGATCAACGCGAACCCGGTGGTGCACGAGCGGCCGGAGCGCGCCGCCCACCCCGC
GCACGCGGCGCTCGACGCGCTCGACGTCTTCGGTAACGGAAGCACAAACTTCCCCTCCCCGGATCCC----TCGGGTTCC
C--------TTTTT---CCTCCATTGATTGATTGGATTGGATTGGATTGGATTGCCTTCACCGACGGCGACGGGGGGACT
GACTGATTTGGGCG----CGTGCAGATACGGTGCGGGACATCAAGGACCCGGAGCACCCCTACTCGCTGGAGCAGCTCAG
C---GTGCTCTCCCAGGAGTCCGTCTCCGTCGACGAGAAGCTCGG--------CCACATCCAGTACGTATGCCTGCAAGA
ATGTGCTCAGC------TTTTCCGATGAGTAGGGTACCAAGTTATCAGATATTCAGATTAGTAGGGGCTGGGACTGGGAG
GC-----------------------------------------AGTGTTAATTTCCAATGGTAATTGCTTTGTTCCAGGC
GTG-------------TCATGCACTCATGCCCCTACC-----------------------ATCCCCTTCCAATCTTAGAA
GCCAGAATCATTGAGGGTTCCTACTACTTCAGTCGAAATGTGGAACGCGGCGTGCGCGGTTCGTACAGTCCGGCTAGCTA
GATTTACATTCGTGACA----------------------AGATAGT-TGCTACCATAAACGATCTACCAAGTCAATTTGA
CCATTCATATTATACTCCCTACATCTCAGTGGAGATTCAGAGTATGATCTTGAAGGCACGTTGCGTACAGAAATGGAGGG
TTGATTGCTTTTC--------TAGAATTAAATAGACGAATGTCTCATAGGATTGCTTGCTGCTTGGGATGTGATATCCCA
CTAGCTTTGCCGATCCTTATAGATTATGTCTTTATTCTGTATACGGACTCTGCGACCTTCAGGGTGCATTTGCTTACTGC
GGGCAAAGCATCCTCTGTTACTCTCGTTGTACAGTA--CAGTATGCTCGTACAAAATATGTTTTGTTT-CATGCAAGAAA
TTGACAAGCATCATTCAGCTTCAGTTTGTTGGGATCACTGTTCACACCTTAAAATTGCTT-GCAGGATAACCTTCACCCC
AACTGTGCAACACTGCAGTATGGCCACAGTGATTGGTCTGTGCCTCAGGCTTAAGTTGATGCAAAACTTCCCTCCGCATT
TCAAGGTGCTTATTACTATG-------------TTTCTGTATTCATGGTGTTCTGATTAAGTCAACTGGTTGAGACTTGA
GATGCTTTACATTATGTTTTATGTAGCATATGTGCCATCAGCAGCCATTATCCAAACTTTTAGAGTTTTCACGCATGTTC
ATTTTAGGCACTTCTGTTATCTTT--TGTCTCTGTGCAGTGAAATATGGGATAGTTGGAATGTCACAAATTTAACCATTA
GTTGATATTGTTTTTTTTCATCCCTCAAGACACTTGCCACATATGTAC-ACAGATGTGCATGTTTGCAAATTCGTAAACA
TTGTGTAGATCAAGAGAAGCAGACAGGCATCACAAGCCATACACCGTAAATTGTGTGCACACATAAAAGCTAGCTCCTAT
AACCTATAAGAATGTTAATAAACCTACTGAACCATTTATGATGGT-TTTTTTATCTGCCTCAGAGGAACCATAAATCATC
TCTGAGTCTTTTAAACTTATATTTTCTGTAGAATACTATTCATGGATCTGCAAGTTATGTAGTCAGGTGC-TTGTCTTCA
GTAGCACTGTTTAAGATTTGGAGCTAGGTATAATGCAAACGATCTCCAAAAAAAAAGTATATCATAATATTTTGAACAAA
ACCCCCTTCATAATAATTCCTGATGAATATATTATTCAGCTATTAAGCATTTCAGTGGGAATATGATTCCTTTTTTTGGG
GGGTTGTATGAATGTGCAGATTGACATTAAGGTTGCTCCAGGATCTCTTGCTAATGAAGAATCAGGTGCGTAAGATGACA
AA---TA-CCTAACTCATGGCTAAGCTTGTAGCTTTCAGTCTAATACGATTGGGCATTATAACTCATGACAGGGCAGCAT
TATCGATGGAACTACACAATTAATTCATTTTACTCTGTACCTGCTGAACTCTGCAAAACGAGAACGGCAGTTGTATAGCA
CAATTGTGTTTGAACAGCGCTACTTTAGTATGGTATGTCGTTATTAACATGCTGGATTGACAGTAAACAAACAGCTGAAC
GACAAGGAGAGGGTCGCGGCGGCGTTGGAGAACCCCAACCTCCGGCAGCTGGTGGACGACTGCCTCTGTTCGGATCATCC
GTCGTCGTACTAGCTCGCCCCCTGCTGGTGCCCCCGCAACCCGTGCCTGCCGTACATCAATAATAAGCAGGCGTGGCATG
TTGTGTGTTTGCCCTATACTGCACCTGATCATGCATGGGCCAAT-------------------------TTTTTCTCTGT
TAGTTGTATGCTACTACGTGGACTGGAATATCGTC------------------------------AGCAATATGCATTTT
TCATGCCTGCTTATGCACCAATCCTTCAGAGTAATAGGGAATAAAGAATGTTGTAGTTTGTTGCGGCATGATCGATTTGG
TCCTATCTTACCGCTTCTCTGTCGATTGTTGGTTGGTGGCTTG--------TTGCCGTCAGGTTTTTGCAAATGGAATGT
GATGTGCATTTAAGCCGT------------GCTTTAGTTGCGATTACTGATTAGTCTCTCCCTTATC---TGTTGTCATG
TTTCTCTTT----TAGACGCATCATCATCGTTTGCTGGTTATCGACTTTGGGAAGAAGGGGAGCCGTGTGGTGCTCCCCT
TCTCTCTATGTAATG------TACATAGTCTTGGCAATGTCAAAA-TGACTAAATGAGGCAAAGTTCTGATGATGTAATA
ACGTGTGCGGCTTTGCTTTGCTTGCTGTCCATATGTTGTATATGCAGCAGCT------CGATGAATTTGTCTATCTCCAG
TCAGAAG--AACATGACTCGGATGTTTTATCACCTGTGAACTGGAAGGAACTTGTCCCGTTGACTGC-------------
---CCACGACGAGCCCCTCTGATTGCCTCATGGATTGAAACTTTTTTGCATCACATGAATTGTCAGGTTGCGTGCGATTT
GGTTATGTTGTATTTGTTTTTTTTTTTGCATGATAATACGTGTCTCATTTATATAGAATAAAGATCAAGTTACAAGGCAC
GTAAGCACCGATCATACATGACTGAAAAGATAGGAAGATCCTATGCAAAATACCAGCGCCTGTCCCTTTCCTTCGACACC
ACCGAAGCGGCCACTAAAGGGTAAAAAGACAGATCACCTCTTTGCCCAAGCTCGACGCTGCTCCATCGCTGATCAGCAGC
TTTACG
>chr5D_1
GCGTCAAACCCATTCTGGTTGTACCCCGTGATGACCGCGTTCCATGAGACGATGGTCCGGTCCGGCATGCTCTCGAACAA
GGACAAAGCAAGGTCCATCCTCCCCAGACGCGCGTCGAGCGACACCATGGCGTTCCAGCTCGACACGCTCCGCGCCGGCA
TCTGTTCGAACACGGCCCTCGCCGTCTCGGCGTCCCCGCACTTGCCGTACATGTTGAGCACCGAGTTAGCCACAGGCACG
CAGCCGCCCAGGCCGAGCTTGACGACGAAGGAGTGCACCCTCCGCCCGGCCCCGCCGGCCTCCGCGGCCGCGCACGACGA
GAGCACGTTGGTGAGCGTGAACTGCGTCGGCGCCAGCCCGTCCCCGACCATGTCCAGGAACGCCTCGACGGCCTCCCCGA
AGCGGCGGGCGCGGTTGAGCCCCACGACCATGACGGTCCACGACACGGCGTCGCGCTCGGGCATTTCCGCGAACACGGCG
CGCGCGTCGGCCAGGCGGCCCGACTTGGCGTAGGTCGACAGCAGCGAGTTCCAGGTGAACACGTTCCGCTGCGCCGCGGG
GACCTCGTCGAACAGGCGCCGCGCCTCCCGGAGGCC---------GCCGG---CGGCGGCGGCGTAGTAGGAGAGGAGGT
TGTTGCAGAGGTAGGCGCTGGCGAGGAGGCCGGCCTTGACGGCGCGCGCGTGGACGGCGCGCCCGGCGCCCGGGTTGGCG
GCCGCGCCGCACAGCCGCAGGAGGCGCGCGCAGTGGTCGGCGGCGGCGGCCAGCGCCGTCCGCGGCGCCCCGGCGTGGA-
--GCTCCAGTGCGGCGGCATCTCGCATGTCGCGGGAAAGTCAGCGGGCTCCCGCGTGCGTGCCAGCGGGCCGCGGCCCAC
CGGATTAGCAAAA-CCGGCTCGCTCGCTCGCCCCACTTTTTCCCCAAACCGAAACTGCTAGCTCGCCAACAGTTTTGTCC
TCTTGTCGCGCTCTCTCTCTCTCTCGGCCGACGACCGAAGTCGCACGGCAGAGCACCGCCGCGCCGCGCCGAGGAGGGGG
AAG-GGGAGGAGATGACGGTGGGGATGATCAACGCGAACCCGGTGGTGCACGAGCGGCCGGAGCGCGCCGCCCACCCCGC
GCACGCGGCGCTCGACGCGCTCGACGTCTTCGGTAACGGAAGCG-------------CCCGGATCCCCTACTCGGTTTCC
TCTTTCGTTTTCTCCTCCCTCC----ATTGATTGGATTGG---------------CTTCACCGACCGAC---GGGGAGCT
GACTGATTTGGGTG----CGTGCAGATACGGTGCGGGACATCAAGGACCCGGAGCACCCCTACTCGCTGGAGCAGCTCAG
C---GTGCTCTCCCAGGAGTCCGTCTCCGTCGACGACAAGCTCGG--------CCACATCCAGTACGTATGCCTGCAAGA
ATGTGCTGCTCAAGTTTCCTTCTGATTGTCAGGGTACCAAATTGC--------CAAATTAGCAGGGGCTGGGACTAGGAG
GTG---GTAGTACTTGGTGTTAATTTCCGA------------------TAATTTCCAATGTTCATTGCTAC--TCCTGCA
GTG-------------TCCTGCACCCGTTCCCCCATC-----------------------AGCCCCTTCCAGTATTAGAA
GCCAGAATCATTGTGGTTTTGT--------AGTGGAAATGTAGAACC---CGTGCCCGGTTCACGCAGTCCGGCTAGCCA
GATTTGGATTTACGCCCGTGACAAGATGATTATTATCACAGATGATGAGCTACCATATATGATCCTTTCTCGTTTAT---
----------------------ATCTCAGTGGAGATTCAGAGCGTGATCTTGAAAGCACGCTGCATACACAAGTGCAGCG
CTCACTGCTTTT-ATCAAAAACAAATTAAAATAAAAAAAAGTATGCCTC---TGCTTGCTGCTTGGGATTTGGTTTCCCA
TTAGGTTGCTC-ATCCTTGTATATTA--TCTTCACTCTGTATACGGGATCTGCGAGCTTCAGAATGCACTTACTTGTTGC
AAACGAAGCATCCTCATTGTACA-----GTAGAGTA--CAGTCTGTTCATACAAAATCTGTTTTGGTTTCATGCAAGCAG
TCAAGAGCTAGCATCCTGCTTAAACTTTTGGGGGTCCCTGTTCACACCTTGCAATTGCTT-GCAGGATAACCTTCACCCC
AACTGTGCAACACTGCACTATGGCCACAGTGATTGGCCTGTGCCTCAGGCTTAAGTTGATGCAAAACTTTCCTCCGCATT
TCAAGGTGCTTAGCATGTTTCTATATGGATCCCTTTCTATATTCATCGGGTTCTGATTAAGTTAACTAGTTGAGATGCTT
TATAAATTACATTATGTTTTATGTAGCTTACGTGCCATCAGCAGCCATTATCCAATGTTTTAGAGTTTACATGCATGTTC
AATTTAGCAATACTTTTCTTTTCCTCTGTCTCTGTTCGGTGAAATATGGGATAGATGGAATGTCACGACGTTAACTATTA
CAAACGTATTG-TTTGTTCATCCATCAAGACACTTGCCACACATA---TACACATGCGCATGTTTGCAAATTCGTAAACA
TTGTGTGTATCAAGAGAAGCAGACAGGCAGCACAAGCCATACACTGTAAATTGTGTGCATGTAGAAG------CTCCTAC
AATCTATAAGAGTGTTAATAAACCTACTGAACCATTTATGATGGGGTTTTTTATCTGCCTCAGAGGAACCATAAATCATC
TC-GATTCTTTTAAACTTTTATTTTCTGTGGAATACTATTCATGGATCTACAAGTTATCTACTCAGATGGTTTGTCTTCA
GTAGCACTGTT-AAGATTTCGAGCTAGCTATAATGCAAACGAACTCCACCAAAAGAAAATGCC-----------------
-CCTCTTTCATGATGATTCTTATGGAATTATTTTA---------------TTCAGTAGTACTATGACTCCTTTCTTTCTT
G---TGTATGAATGTGCAGATTGACATAAAAGTTGCTCCAGGATCTCTTGCTAATGAAGAATCAGGTGCGTAAGATGACA
GA---TATTCTAACTCATGGCTAA--------------------------------------CTCATCATGGGGCAGTAT
TATCCGTGAAAATATCCAATGCACCCCTTTTACTTTGTACCTGCTGAACTCGGCAAAACGAGAACGGCAGCTCTATAGCA
CAATTGCGTTTGAACAGTGGTATGTAT--------GACG----TTAACATGCTGAATTGACAGTAAACAAACAGCTGAAC
GACAAGGAGAGAGTCGCGGCGGCCTTGGAGAACCCCAACCTCCGGCAGTTGGTGGACGATTGCCTCTGCTCAGATCATCC
ATCCTCATATTAGCTCGTCCCTGATGCCTCACAACC-------TGTCTGTTGTACAGCAATAATAAGCAGGCATTTTTTG
TGT----TTTGCCCAATACTGTACCTGAAATTCGAGA-AAAGGCACTATAGCTGGTCATGTATGTGCCATTCTTTTGTGT
TAGGTGTACGCTGCTACTCC--CTGGAATATCAGCAATGCTTTTTCTTCTTTCCCGCCAAAAAAAAGCAATGTTTTTTCT
TCATGCCTGCATATG-ACCAGTCCTTCAAAGTAGGAGGGGAA-----------TTGTTTGTTGCAGCAT----GATTTGG
TCCTATTTTACTGGTTCTATGTTGATTATCACTAAGTATTGTTGTTGGCTATTGCCGTCAGGG-TTTACAAGTGGAATGT
GATGTGCAGTTAAGTCGTGCC---TGCCGCGCTTTAGTTGTGATTACTGATTAGTCTCTCCCTTATC---TGCTGTCATG
TTTCTCTTC----TAGACGCATCAT------TTGCTGGTTATCAACTCTG---AGAAGGGGAGCCGTGTGGTGCTC----
----TCTATGTAATG------TACATAGTCTTGGCGATGTCAAAA-TGA--------GGCAAAGTTC---TGATGTAATA
ACGTGTGCGGCTTTGCTT-----GCTGTCCACATGTTGTATATGCAGCTCTGTCCTTCCGATGAATTTTGTCTGCGCCAT
GTCGATCAAAACATGACTCGGATGTTTTATCACCTGTGAACCGGAAGGAACTTGTCCCCGTTGACCCCCGCGTGCCGGTG
CCGCCACGACGAGCCCCTCTGGTTGCCTGATGGTTTGAAT-TTTTTTGCATCACACGA-----CAGGTTGCGTGCGATTT
GGTT----------------------------------------------------------------------------
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>chr5A_1
GCGTCAAGCCCATTCTGGTTGTACCCCGTGATGACCGCGTTCCATGAGACAATGGTCCGGTCCGGCATGCTCTCGAACAA
GGACAAAGCAAGGTCCATCCTCCCCAGACGGGCGTCGAGCGACACCATGGCGTTCCAGCTCGACACGCTCCGCGCCGGCA
TCCTCTCAAACACAGCCCTCGCTGTCTCGGCGTCCCCGCACTTGCCGTACATGTTGAGCACCGAGTTGGCCACGGGCACG
CAGCCGCCCAGCCCGAGCTTGACGGCGAAGGAGTGCACCCTCCTCCCGGCCCCGCCGGCCTCCGCGGCCGCGCACGACGA
GAGCACGTTTGTGAGCGTGAACTGCGTCGGCGCCAGCCTGTCCCCAACCATGTCCAGGAACGCCTCGACGGCCTCCCCGA
AGCGGCGGGCGCGGTTGAGCCCCACGACCATGACGGTCCACGACACGGCGTCGCGCTCGGGCATTTCCGCGAACAGGGCG
CGCGCGTCGGCCAGTTGGCCCGACTTGGCGTAGCTCGACAGCAGCGAGTTCCAGGTGAACACGTTCCGCTGCGCCGCGGG
GACCTCGTCGAACAGGCGCCGCGCCTCCCGGAGGCCGAGGGCGCCGCCTCCTCCGGCGGCGGCGTAGTAGGAGAGGAGGT
TGTTGCAGAGGTAGGCGCTGGCGAGGAGGCCGGCCTTGACGGCGCGCGCGTGGACGGCGCGCCCGGCGCCCGGGTTGGCG
GCCGCGCCGCACTGCCGCAGGAGGCGCGCGCAGTGGTCGGCGGCGGCGGCGAGCGCCGTCCGCGGCGCCCCGGCGTGGA-
--GCTCCAGGGCGGCGGCATCTCGCATGTCGCGGGAAAGTTAGC----------------------GGGCCGCGGCCCAC
CGGATTAGCAAAA-CCGGCTCGCTCGCCCGAC-----TTTTCCCCAAACCGAAACTGCTAGCTCGCCAACAGTTTTGTCC
TCTTGTCGCTCTGTCTCTCGCTCTCGGCCGACGACCGAAGTCGCACGGCAGAGCACCGCCGCGCCGCGCCGGGGAAGAGG
GGGA-GGGGGAGATGACGGTGGGGATGATCAACGCGAACCCGGTGGTGCACGAGCGGCCGGAGCGCGCCGCCCACCCCGC
GCACGCGGCGCTCGACGCGCTCGACGTCTTCGGTAACGGAAGCG-------------CCCGGATCCCCTACTCGGTTTCC
TCTTTCGTTTTTTCCTCCCTCCATTGATTGATTGGATTGG---------------CTTCACCGACGGCGACGGGGGAACT
GACTGACTTGGGCGCGTGCGTGCAGATACGGTGCGGGACATCAAGGACCCGGAGCACCCCTACTCGCTGGAGCAGCTCAG
C---GTGCTCTCCCAGGAGTCCGTCTCCGTCGACGAGAAGCTCGG--------CCACATCCAGTACGTACGCCTGCAAGA
CTGTGCTGCTCAAGTTTTCTTCTGATTGTCAGGGTACCAAATTGC--------CAAATTAGTAGGGGCTGGGACTAGGAG
GTACTAGTAGCACTCAGTGTTAATTTCCAA------------------TAATTTCCAATGTTCATTGCTAC--TCTTGCA
GTG-------------TCCTGTAGTACTAGTT---------------------------------------GTATTAGCA
GCCAGAATCATTGTGGGTTTGT--------AGTGGAAATGTAGAACC---CGTGCCCGGTTCACGCAGTCCGGCTAGCCA
GATTTGGATTTACACCCGTGACAAGATGATTATTATCACAGATAAT-AGCTACCATATATGATCCTTTCTCGTTTAT---
----------------------ATCTCAGTGGAGATTCAGAGCGTGATCTTGAAAGCACGCTGCATACACAAGTGCAGCG
CTCACTGCTTTTTATCAAAAATAAATTAAAGTAAAAAAAAGTATGCCTC---TCCTTGCTGCTTGGGATTTGGTTTCCCA
CTAGGTTGCTC-ATCCTTATATATCA--TCTTCACTCTGTATACGGGATCTGCGAGCTTCAGAATGCATTTACGTATTGC
AAATGAAACATC----------CTCGTTGTACAGTA--CAATCTGTTCGTACAAAATCTGTTTTGTTT-CACGCAAGAAG
TCAAGAACTATCATCCTGCTTAAACTTTTGGGGATCACTGTTCACACCTTACAATTGCTT-GCAGGATAACCTTCACCCC
AACTGTGCAACACTGCAGTATGGCCACAGTGATTGGTCTGTGCCTCAGGCTTAAATTGATGCAAAACTTTCCTCCGCATT
ACAAGGTGCTTAGCATGTTTCTATATGGATCCCTTTCTGTGTTCATCAGGTTCTGATTAAGTCAACTAATTGAGATGCTT
TATAGATTACATTATGTTTTACGTAGCATACGTGCCATCAGCAGCCATTATCCAGTGTTTTAGAGTTTACATGCATGCTC
AATTAGGCAATATTTTTCTTTTCCTCTGTCTCTGTTCGGTGAAATATGGGATAGATGGAATGTCACAGAGTTAACTATTA
CAAACGTATTG-TTTGTTCGTCCATCAAGACACTTGCCACACATATACTACACATGTGCATGTTTGCAAATTCGTAAACA
TTGTGTGTATCAAGAGAAGCAGACAGGCAGCACAAGCCATACACTGTAAATTGTGTGCATGTAGAAA------CTCCTAC
AATCTATAAGAGCGCTCATAAACCTACTGAACCATTTATGATGGGGGG-TTTATCTGCCTCAGAGGAACTATAAATCATC
T-TGATTCTTTTGAACTTTTATTTACTGTATAATACTATTCATGGATCTACAAGTTATCTGCTCAGATGGTCTGTCTTCA
GTAGCACTGTT-AAGATTTCGAGCTAGCTATAATGCAAACGAACTCCACCAAAAGAAAATGCC-----------------
-CCTCTTTCATAATGATTCTTGTTGAATTATTTTA---------------TTCAGTAGTACTATGACTCCTTTCTTTCTT
G---TGTATGCATGTGCAGATTGACATAAAAGTTGCTCCAGGATCTCTTGCTAATGAAGAATCAGGTGCGTAAGATGACA
GAAGATA-TCTAACTCATGGCTAAGCTTGTGTCTGTCAATCTGAT----------ATTATAGCTCATCACAGGGCAGTAT
TATCTGTAAAAATATCCAATGCATCCCTTTTACTTTGCACCTGCTGAACTCGGCAAAACGAGAACGGCAGCTGTATAGCA
CAATTGTGTTTGAACAGTGGTACTTTGGTATGTACGACG----TTAACATGCTGAATTGGCAGTAAACAAGCAGCTGAAC
GACAAGGAGAGAGTCGCGGCGGCCTTGGAGAACCCCAACCTCCGGCAGTTGGTGGACGATTGCCTCTGCTCAGATCACTC
ATCCTCATATTAGCTCGTCCCTGATGCCTCACAACC-------TGTCTGTTGTACAGCAATAATAAGCAGGCATTTT--G
TGT----TTTGCCCAATACTGTACCTGATTTTCGAGAGAAAGACACTATACCTGGTCATGTATGTGCCATTCTTTTCTGC
TAGTTGTATGCTACCACTCC--CTGGAATATCTGCAATGCC--------------------------------TTTTTCT
TCATGCCTGCGTATG-ACTAGTCCTTCAAAGTAGGAGGGGAA-----------TAGTTTGTCGCAGCAT----GATTTGG
TCCTATTTTACTGGTTCTCCGTTGATTATCAGTATATAA--TTGTTGGCTATTGCCGTCAGGA-TTTACAAGTGGAATGT
GATGCGCGGTTAAGTCGTGCCGCCTGCCGTGCTTTGGTTGTGATTACTGATTAGCCTCTCCCTTATCTGGTGCTGTCATG
TTTCTCCTTTGGATAGACGCATCGT------TTGCTGGTTACCAG-TTTGAGAAGAAGTGGAGCCGTGTGGTGCTC----
----TCTCTAATCTACAGTATTATATAGTCTTGGCAATGTCAAAAATGA--------GGCAAAGTTG---TGATGTAATG
GCGTGTGGGATTTTGCTTGCCGTCCATTATATGTGTGTATATG-------------------------------------
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>chr4D_1035
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----------------------------------------------TGCACGAGCGGCCGGAGCACATAGTCCACCCCGC
GCATGCGGCGCTCGACGCGCTCGACGTCTTCGGTAATGGAAGCG-------------CCCGGATCCC----TCGGTTTCC
TTCTTTGGTTTTTT---CCTCC----ATTGATTGGCTTAG---------------CTTCACTGACTGAC---GGGGA---
-ACTGATTTGGGCG----TTTGCAGATACGGTGCAGGACATCAAGGACCCGGAGCACCCCTACTCACTGGAGCAGATACG
GTGTGTGCTCTCCCAGGAGTCTGCCTCCGTCTCCCAGTAGTCCGTCTCCGTCTCCATATCTGGTACGTATACTTGCAAGA
ATGTGCTGCTCAAGGTTTCT--------------------------AGTGATTATTAGGAGTTCGGTTTGGGACTAGAAG
GTGCTGCTCAAGGTTTCTAGTCCGTCTC------AAGGTTTCTAGTGTTAATTTTCAATGTCAATTGCTTAGTTGCAGGC
GTTCTCTCCTGCAGCATCTTGCACTCATCCACCTATGAGCCCTCCAATCTCTTCTCTATGATCCCCTTCCATTATAAGAA
GCCAGAATCATTGTGGGTTTGT--------GGTGGAAATGCATA------------------------------------
--TTTACATTCATGATA----------------------AG---AT-AATTAGCACAAATGGCCATTTCTCATCGAT---
----------------------ATCACAGTAGAGATTCGGAGTGTGATCTTGAAAGCACGGTGCATACAGAAACACAATG
TTGAGTGCCTTTA--------TTAAATAGATTAAAAATAAGTCGCGCGAGTTTGCTTTCTTGTTGGGATTATATTTCCCC
GTAGCTTGCTG-ATCCTACA----TA--ACTTCATTCTGTATAC-GGATCTGCGACCTTCAGGATGCATTTACTTATTGC
GAGCAAAGCATCCTATATTATTCTCATTGCACTGTACACAGTCTGCTCGCACGAAATCTATTTTGTTT-CATGCAAGAAG
TCAAGAACTATCATCCAACTTGAACTTTTGGGGATCACTGTTCACACCTTACAATTGCTTTGCAGGATAACCTTCACCCC
GACTGTGCAGCACTGCAGTATGGCTACGGTGATTGGCCTGTGCCTCAGGCTTAAGTTGATGCAAAAC-------------
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>chr3D_1215
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-ACTGATTTGGGCG----TTTGCAGATACCGTGCAGGACATCAAGGACCCGGAGCACCCCTACTCGCTGGAGCAGATACG
GTGTGTGCTCTCCTAGGAGTCTGTCTCCGTCTCCCAGTAGTCCGTCTCCGTCTCCATATCCGGTACGTATACCTGCAAGA
ATGTGCTGCTCAAGGTTTCT--------------------------AGTGATTATTAGGAGTTCGGTTTGGGACTAGAAG
GTGCTGCTCAAGGTTTCTAGTCCGTCTCCGTCTTAAGGTTTCTAGTGTTAATTTTCAATGTCAATTGCTTAGTTGCAGGC
GTTCTCTCCTACAGCATCTTGCACTCATCCACCTATGAGCCCTCCAATCTCTTCTCCATGATCCCCTTCCATTATAAGAA
GCCAGAATCATTGTGGGTTTGT--------GGTGGAAATGTAGA------------------------------------
--TTTACATTAATGATA----------------------AG---AT-AATTAGCACAAATGGCCATTTCTCATCGAT---
----------------------ATCACAATAGAGATTCGGAGTGTGATCTTGAAAGCATGCTGCATACAGAAACACAATG
CTGAGTGCCTTTA--------TTAAATAGATAAAAAATAAGTCGCGCGGGTTTGCTTGCTTGTTGGGATTATATTTCCCA
GTAGCTTGCTG-ATCCTACA----TA--ACTTCATTCTGTATAC-GGATCTGCGACCTTCAGGATGCATTTACTTATAGC
AAGCGAAGCATCCTATATTATTCTCATTGCACTGTACACAGTCTGCTCGCACGAAATCTATTTTGTTT-CATGCAAGAAG
TCAACAACTATCATCCAACTTGAACTTTTGGGGATCACTGTTCACACCTTACAATTTCTTTGCACCATAACCTTCACCCC
GACTGTGTAGCACTGCAGTATGTCTACGGTGATTGGCCTGTGCCTCAGGCTTAAGTTGATGCAAAAC-------------
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>SNPs
--------------------------------------------S-----------------------------------
------------------------------------------------------------------------S-------
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-----------------------S---------------S----------------------------------------
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---S---------------SS-------S-----S------------------S---------------S----------
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--------------------S------------------------------------------------------SS-SS
SS------------------------------------------------------------------------------
-------------S---------------------------------------------------------S--------
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-------------------------------------------SSSSSSSSSSSSSS------------------S----
S---------------------------------------SSSSSSSSSSSSSSS---------------------S---
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-------SSS--------S---S---SSSS----------S--SSS--SS-----S-------------------S----
-S----------------------------------------------------------S---------S---------
------------------S---------S------S-----------------------------------S-S------
-------------S-----SS-SSSSSSSS---S-------S----SSSS-----S------SSS-------------S-
-----------S--------------------------------S--S-----------S----SSSSSSSSSSSS-SSS
SSSSSSSSSSSSSSSSSSSSSS---------------------S----------S-----S---S----------S--S-
----S-------S----------S---S-----S-SS--S-----SSS--S------------------S----S-----
-------SSS-S---------S----SS----S-------------SS---------------S-------S----S---
-S--------------S---S---------------------S--------------S---------------------S
-SS----SS-----S------S-SS--S-S---------------------S----------------------------
---------------------------------------------------------------------S----------
------------SS-SSS-S--------------------------S-S------------------S-------SSSSS
S--SSS------------------------S------------------------SS-----------S--S--------
-S-----SS-SS-S-S-SS-S-SS-----------S-S----------------S--------------S-----S----
SSSSSSSS-SSS---S-------S-----------------S--S-------S---------------------------
------SS---------------------S--------------S--------------SSS-S---SSSSSS------S
--S--------S--------------------------------S-----------------------------------
-----S------------S------------------------------S--------S--S----S--S----------
-----------S-------S-------S--------------S-----SS----S-SS--SS-SSSSSSSSSSSSSSSSS
S--S-S--------S----S--S-----SSS--SSSSSSSSSSSSSSSSS------S-S-S-----S------S---SSS
-SSS-----------------------S--S-------------------------------------------------
S-------S---------------------SS--S---S---S--SSSSSSSSSS------S-----S---------S--
----SS--S--S--SS----SS--S-S-------S----------------S------------------S---------
-----------------S-S------S-----SSSSSSSSSSS-----------S-------------------------
-----------S-----------S------------------------S----------S--------S--S--------
S--S--S--S-------S---SSSSSSS-SS-SS-SSSSSSSS--S---SS-----S---------------S-SSSS--
-SSSSSS-------S------S-------SS-SS-SS-SSSS-S---------------------------S--S-----
-----------------SSSSS----------SS-------------------------------------S-SSS--S-
----------S----S----S-------S----SS----S-SSSSSSSSSSSS-----------S----SSSS-------
------S----S-S--------S----S-SS--SS--SSSS-S-------------------SS---S---S--------
--------S-----S-------------------------S-------------------------------S-------
-------------------------SSSSSS------------S------S-------------------------SSSS
SSSS---------------------------------------------SSSSSSSS----------SSS----------
------------------SS-S--------------------------SSSS----------------SSSSSS-S---S
SSS--SS----------------------------------S----------------SS-SSSSS--------------
---------------------S------S----S-----SS--------------S--SSSSS-----------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS
>forward_894
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--------------------------------------------------------------------------GCCCAC
CGGATTAGCAAAAA------------------------------------------------------------------
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>reverse_2064
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---------------------------------------------------------------GTGCATTTGCTTACTGC
GGG-----------------------------------------------------------------------------
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>forward_1450
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----------------------------------------------------------------------GCCTGCAAGA
ATGTGCTCAG----------------------------------------------------------------------
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>reverse_3516
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---------------------------------------------------------------------------GCATG
TTGTGTGTTTGCCCT-----------------------------------------------------------------
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------
