>input_sequence_35845
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-----------------------------ATGCGCGCGGATCGCGTCATGGCGGAGGGGGCCAAGCGGATCGACCTGGCC
GCGCCGCTGCGCTCGGCGCGCCTGCCATACCACAAGGCCGACCTCAACTCCGGCCCCGTCCGCCACCCCGGCGCCGTGCC
CTTCGTCTGGGAGCAGAGCCCCGGCCAGCCCAAGAGCGTCCGCACCCGCCGCCCGCCTC------CGTCCTCGCCCTCGC
AGCCGCGCCCGGAGGACAACGGCGCCAACCCTTACCATGACGCCCTGGGCGAGTGCGAGCGCGATCGCGCACTGCCAAAC
GGCGCCGCCCCCGCCCCCGCC---GCCGTGCCCCGAACTGGTGCCGCGGAGCGTGAGGCGGAGAGGGCGGAGGTCGAGC-
--CGAGGAAGGAAGCCACGACGCCGGACGTGCTGTCCGTGGCCGATGTGCTGCGGAAGGAGGAGGAGGA---CGTCGGCG
ATGACGACGAGAGGTTCTCGGACGCGCTGGACACGCTCTCCCGCACAGAGTCCTTCACCGTGAACTGCAGTG--------
-TCAGCGGTCTCAGCGGCGTGCCGGACCGCCCCGCGGGCGCGGCCGCCA---CCAGCGCCGAGCCCGGCGCCCGCGGCTT
CATGATGGACCGCTTCCTGCCGGCCGCGCAGGCGGTGGCCGTGGGCTCCCCGCAGTACACCTTCCGCAAGGCCAGTGTAG
CTGGCTCCACCGGCAACTCTGCCCGCGAGCATGCGCATGCCGCTGCGGCCAATTGGAGGATGGGCAGCGATGATGATCGC
GTCAGGAGAACGCCTGTGCAGCTCCCTTACCAGCATCTGCCTCCCAATTATTTGTCTTGCAACTATCCCAGACGCGATGA
TCATGAAGAGGAGGAGGAGGAAGAGGATGACGATGACTTCGACGTACATAGTACCCGAGGTTTTGCATCCAAGGGGTGTG
GTTTGCTCCCTGGTCTGTGTGTCAAAACCTCCTTGTTGCTACTGAATCCAATGCCTATAATGAAGGGTGGCAAGGCGCGT
CAGGGAGGGAGAGGCAGGGGATTGGCATCCAAAGGCAGGGGCCAGAAGGCACCGAGCCCTCTTGCCCGGAGCTCACAACG
CAAGAATCTTGGCTGTGATTCTAATGGGGTAAGCAGATGCACACAACAATGCTTCATGAATTCAGAGTTATGTTGCTTCT
TGACAGTTTCAGGAGTGGTAGTTCTAAACATCTCAATCTCTGTTATATTGCAGCAATACTGGGAGGAAGTTTATAAGCAC
AAGTTGGAACAGAAGTACATTAACCAAGGAGAGGATAGGAGGAGCAAGCTGACAAGTGAGTCGAACCATCTGACATTCTG
GAGTGACTCTCAAACTGGCGATGGGTCTTCACCATTCCGCCACTCCATAGGTGGTGGCATGTCTCCCTACCGCCGCGACG
TTGCCTTGTCACCATCACGTAAAGCGAATGGGTCACTTGAAGTAAGAGATAAAGATGAGAAAATGAGTAGAAGCAATGGC
TCTAGCTCACTTGGAATAGACCATGATCATGGCTCGTTGCTTGGATCAGATCACAGTAGTTTGAAGGGATCAAGCTCCAT
GAGCTCAGGGGTCGATAGAACATTGCATGAAGATTCAATGGATCACCGTTCAGGTATTGATTCAGAAGCTAGTCAGTTGA
CCCTGCCATTGGATCCAAAGGCATCTTTGAATTCAGGGTGTGATGTTCAACATGGAGGACACCAGATAGTCAGAAGTAAC
AGCATAGTGGAAGTTCAAGACAATGATATGTTGACAAAAACAATCGCCAAAGTGCCAGAATCCATTTCATTAATACCTTC
CGGAAACGCAGGATCAGTAAAACTAGATGATAGAAAAACTCATGATAGTAGTCAGGATGTTCCAGTACATTCGGAAGATA
ATATCGCCGTCAAGAAGGAAAGTATGCCTTTGCAATTTCTAATGCCGTTACCTGTCCCAAAGTCGCCTTCAGATTCTTGG
CTTTCTCGCAATTTGCCATCTGTGAAGAATAAACCACCTGCACCATCTTTTCTTGGAATCCAAGTACAGTCGAAGAAACA
AGCTCCCTGGGCCTCCACACATCCAAAGGAGAATGATCTTAAACCTCCCAGGACACGCCAAATAAGATTTGCAGATGTAA
TTCATAACTTCACTCTGTTCTGCCTATGTTTCTATTCATCTTACTTCTCAGAGCCATTACTGACTGTTTTTATTTGCCTG
CTTATTTAGGTGGTGGAGAGGCCTTATTATCTGGATACTGAGATATGA--------------------------------
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>chr3D_1_TraesCS3D01G295500
GCAATAGTACTCCTGCAGCGTGCGGTTGAGGCATGTATGCTTGTCTGATGCCCCGCTGCCCCAGGTCCCATGTGGCGCCA
GCA-----------------------------------------------------------------------------
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-------------------------------------------------------------------CCACACGAACATG
CCATGGATGCGTACTATAGAGTTCTTCAGACTCCAATGCGCACTTACTTATCTCATAGTATTTTTATGAGCCCAGCCCGT
CGATGAAGGTTCTGGAATGAATTGTTGGACTCCGAAGAGTGCATCGTTTTGCTCGAAGAAGAAGAAGAACGTAGGATAGA
ATTCAAAATTATTAGGGAAAAAGTTTATG-----AACGGTAGAAA-ATGCAAATTATAATTAGCCGACCGAACCCTGCTC
CATG--------AGAT--TAAACAAACCAAGGGAGAGAGCCGACCAGATTCCTACTCAATTCACACTCGCACACAAACCA
AG------------GGAGTGGCAACCCGTGCCTGCCTGCTTAATA-----ACCCGGCCTCCGATCCCGGCGTGCAAACGC
AGATCAGCTCACGTCTGAACACGAAGCACAGTAGAGGAATACTCTACCTACACAAACAGGGCAGGGCAGGGCTGCCATGG
ATATCCAAG----------------TCCAACACTAGA-----GCCGATGCTGCTGGCATCACCTTTTTAGGCAGATCGCG
CAGACTTTTT-CTCCCCAGTCCCCACTG--CACCGCACCGTCGTTTGACGCGAGCACCC---------------GTGTCA
CCATCCCCCGCCGCACGCGCACCATTACACTAGAGCGAGTAGCAAATAGCACGCCGCACCGCCGCCCCACCGCGACCCGT
CACTCCGCACTCGTGGTGGAGTGGAGAGCGTGGCTGGCGGCGGGCCTGCCTCTTCCTCTTCCTAG------CTAGCGGCA
CTAGTAGGAGTAG------CCGGTAAACCCGCACCTAAACCGCAGTCTCCCATCGCCACACCCCGCGGCACGGCACGGGC
ACGGCACAGATCCGTCCACCACCACCCACACTCCCCCGCCGGGTCTCGCGCGGCGGCCAAAGCAAGCGAGCGAGCGAGCC
TTTCCGGGCCGCCTACGCCTC-GGGGCGGATGCGCGCGGATCGCGTCATGGCGGAGGGGGCCAAGCGGATCGACCTGGCC
GCGCCGCTGCGCTCGGCGCGCCTGCCATACCACAAGGCCGACCTCAACTCCGGCCCCGTCCGCCACCCCGGCGCCGTGCC
CTTCGTCTGGGAGCAGAGCCCCGGCCAGCCCAAGAGCGTCCGCACCCGCCGCCCGCCTC------CGTCCTCGCCCTCGC
AGCCGCGCCCGGAGGACAACGGCGCCAACCCTTACCATGACGCCCTGGGCGAGTGCGAGCGCGATCGCGCACTGCCAAAC
GGCGCCGCCCCCGCCCCCGCC---GCCGTGCCCCGAACTGGTGCCGCGGAGCGTGAGGCGGAGAGGGCGGAGGTCGAGC-
--CGAGGAAGGAAGCCACGACGCCGGACGTGCTGTCCGTGGCCGATGTGCTGCGGAAGGAGGAGGAGGA---CGTCGGCG
ATGACGACGAGAGGTTCTCGGACGCGCTGGACACGCTCTCCCGCACAGAGTCCTTCACCGTGAACTGCAGTG--------
-TCAGCGGTCTCAGCGGCGTGCCGGACCGCCCCGCGGGCGCGGCCGCCA---CCAGCGCCGAGCCCGGCGCCCGCGGCTT
CATGATGGACCGCTTCCTGCCGGCCGCGCAGGCGGTGGCCGTGGGCTCCCCGCAGTACACCTTCCGCAAGGCCAGTGTAG
CTGGCTCCACCGGCAACTCTGCCCGCGAGCATGCGCATGCCGCTGCGGCCAATTGGAGGATGGGCAGCGATGATGATCGC
GTCAGGAGAACGCCTGTGCAGCTCCCTTACCAGCATCTGCCTCCCAATTATTTGTCTTGCAACTATCCCAGACGCGATGA
TCATGAAGAGGAGGAGGAGGAAGAGGATGACGATGACTTCGACGTACATAGTACCCGAGGTTTTGCATCCAAGGGGTGTG
GTTTGCTCCCTGGTCTGTGTGTCAAAACCTCCTTGTTGCTACTGAATCCAATGCCTATAATGAAGGGTGGCAAGGCGCGT
CAGGGAGGGAGAGGCAGGGGATTGGCATCCAAAGGCAGGGGCCAGAAGGCACCGAGCCCTCTTGCCCGGAGCTCACAACG
CAAGAATCTTGGCTGTGATTCTAATGGGGTAAGCAGATGCACACAACAATGCTTCATGAATTCAGAGTTATGTTGCTTCT
TGACAGTTTCAGGAGTGGTAGTTCTAAACATCTCAATCTCTGTTATATTGCAGCAATACTGGGAGGAAGTTTATAAGCAC
AAGTTGGAACAGAAGTACATTAACCAAGGAGAGGATAGGAGGAGCAAGCTGACAAGTGAGTCGAACCATCTGACATTCTG
GAGTGACTCTCAAACTGGCGATGGGTCTTCACCATTCCGCCACTCCATAGGTGGTGGCATGTCTCCCTACCGCCGCGACG
TTGCCTTGTCACCATCACGTAAAGCGAATGGGTCACTTGAAGTAAGAGATAAAGATGAGAAAATGAGTAGAAGCAATGGC
TCTAGCTCACTTGGAATAGACCATGATCATGGCTCGTTGCTTGGATCAGATCACAGTAGTTTGAAGGGATCAAGCTCCAT
GAGCTCAGGGGTCGATAGAACATTGCATGAAGATTCAATGGATCACCGTTCAGGTATTGATTCAGAAGCTAGTCAGTTGA
CCCTGCCATTGGATCCAAAGGCATCTTTGAATTCAGGGTGTGATGTTCAACATGGAGGACACCAGATAGTCAGAAGTAAC
AGCATAGTGGAAGTTCAAGACAATGATATGTTGACAAAAACAATCGCCAAAGTGCCAGAATCCATTTCATTAATACCTTC
CGGAAACGCAGGATCAGTAAAACTAGATGATAGAAAAACTCATGATAGTAGTCAGGATGTTCCAGTACATTCGGAAGATA
ATATCGCCGTCAAGAAGGAAAGTATGCCTTTGCAATTTCTAATGCCGTTACCTGTCCCAAAGTCGCCTTCAGATTCTTGG
CTTTCTCGCAATTTGCCATCTGTGAAGAATAAACCACCTGCACCATCTTTTCTTGGAATCCAAGTACAGTCGAAGAAACA
AGCTCCCTGGGCCTCCACACATCCAAAGGAGAATGATCTTAAACCTCCCAGGACACGCCAAATAAGATTTGCAGATGTAA
TTCATAACTTCACTCTGTTCTGCCTATGTTTCTATTCATCTTACTTCTCAGAGCCATTACTGACTGTTTTTATTTGCCTG
CTTATTTAGGTGGTGGAGAGGCCTTATTATCTGGATACTGAGATATGATAT---------------GTATATATTCATGA
TATGATTCCTGGGGGGGACATCAGTCCTATATCTGTGACTGCCAGCGCCCAATGGTTAGGCATAGAGGTGCCCTGTTTTG
CTGTTGTAGTGATCGCTGGGTACCACTTACCAGCGATCCAGCATGTTGGTAAATTCGATGCGCATGCCTGTTTGCATACT
ATTTGCTTTATGTTGCCCAAGGTATGTTGGTAGTGGTTTAGCTCTGTTGCAAATCGTATTTCTATACAGGATTGCTTCTG
TTTGCTTCATCTTACTGTCCATAAAATATGTAATACTGTTTACTCTGTAAAAACGTTGAGTTGATCTTCAGTTGTATCAT
AGGATGCAATTCCAATATAAGTCAGCCTTTTGTTCCCAAGACATTTCCTGTGCAATGTAAAT------------------
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---------------TGTTGGTGATTGGTTTTGAGATGGAAAATGTATATCACATT------------------------
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----TTTTTGTCACCATAATGTATATAAAAATATAGCACAACTCGCATGCAGAAAAGTTGGAAACTGTGAGCTTCAGATG
TGCTCTAAAAAACAGCCTATATATTTGGTGCATGATCTCAGTTCTCAAC-----TAAGACATAGGATTCTCATAACGAAG
TGGTAATCCACGTCTGCACTCTTGTTTTGTGTTGACTTGTTACATTCTGTTTATCGAAGTGGTTGAC-------------
--------------TTGGTGCA------------------TTATGTCTCTCCGTTATTTTACGGGGAAGTATTGGTACTG
AACTTATTATTATTGAACGAGTGATTCAACTAGGACACTGCTGATGCTGTTATTTTGGTTGAGACTTAAGATATTTTCTT
GTGGCTATTAAGCATCCAAAGCTTTTGCTGCTCTTGATTCGAACACGCTTAGAGAGCAGATAGATATTCCGAACTGGTAC
TGCAAAAATGGACCTGTATGTGTTAAAAAAAGGAAAGACTGGTTTGTTCAGATACTATATGTATTCCGTATTTGC-----
--------ACTGCAAAAATGGACCTGTATGTGTTAAAAAAGGGAGACTGATTTTGTTAATCATATTC
>chr3B_1
GCAATAGTACTCCTGCAGCGTGCAGTTGAGGCATGTATGCTTGTCTGATGCCTCGCTGCCCCAGGTCCCATGTGGCGCCA
GCACCACAGGAACGGAACGGGCTCGTCTACCGTGCTGAAAGGCACGGCAGGGAGCTACAGTAGCCACGCAGTGGGAATCA
CAGACGACACTGCAGGGCCCTATAGTACTATGCACTGTAGCGAATCTACTGTAGTAAATCTGTACTGTAGCGGGCACCCT
GTAGCACCACACTGTTCATGAGTTCCTGTAGCGCGCAGTGGAAAATCACAGAGGCACTGCCTGTAGCGCGCAGTGGAAAA
TCACAGAGGCACTGCAGGCTACTATAGCTCCTCTACCGTGCCTTCAGCACGGTAGACGAGCCGGTTCCCACAGGAACATG
CCATGGATGCGTACTATAGAGTTTTTCAGACTCCAATGCACACTTATCTCATAA-------TTTTACGAGCCCGGCCCGT
CACTGAAAGTTCTCGAATGAATTCT--------------TGCATTGTTTTGCTCGAAGAAGAA------CGTAGGATAGA
ACTGAAAATTCGCAGTGAAAAAGTAGAATGTAGAAACAGTAGAAA-ATGCAAATTAT---CAGGCGACCAAACCCTGCTC
CATCAGATCATCAGAT--TAAACAAACCAAGAGAGAGAGCCGACCAGATTCCTACTCAATTCACACACACACACGC----
------AGGCGCCTGGAGTGGCAACCCGTGCCTGCCTGCTTCATA-----ACTTGGCATCC-------------------
-GATCCGCTCACGTCTGAACACCGAGCACAGGAGGAGAAACAGCTTCACCGAGTA-------------------------
-----------GAGCAGAGTAGCCATCGAACACTGGA-----GCCGATGGTGCTGGCATCACCTTTTTAGGCAGATCGCG
CAGACTTTTT-CTCGCGAGTCCCCACCGCACACCGCACCGTCGTTTGACGCGAGCACCCACTC--------CCCGTGTCA
CCATCCCTCGCCGCACGCGCACCATTAGACTGGAGTGAGTAGCAAATAGCACGCCGCACCGCCGCCCCACCGCGACCCGT
CACTCCGCACTCGTGGTGGAGTGGAGAGCGTGGCTGGCGGCGGGCCTGCCTCTTCCTCGCCCTCGCGCCTCGTGGTGGCG
CTAGTAGGAGCAGTAGCAGCCGGTAAACCCGCACCTAAACCGCAGTCTCCCATCGCCACACTCCG-----CGGCACGGGC
ACGGCACAGATCC-----------CCCACTCTCCCCCGCCGGGTCGCGCGCGGCGGCAAAAGCAAGCGAGCGAGCGAGCC
TTTTCCGGCCACCTACGCCTC-GGGGCGGATGCGCGCGGATCGCGTCATGGCGGAGTCGGGCAAGCGGATCGACCTGGCC
GCGCCGCTGCGCTCCGCGCGCCTGCCGTACCACAAGGCCGACCTGGACTCCGGCCCCGTCCGCCACCCCGGCGCCGTGCC
CTTCGTCTGGGAGCAGAGCCCCGGCCAGCCCAAGAGCGTCCGCACCCGTCGCCCGGTTCCGCACTCGCCCTCGCCCTCGC
AGCCGCGCCCGGAGGAGAACGGCGCCACCCCTTACCACGGCGCCCTGG------GCGAGCGCGATCGCGCACTGCCAAAC
GTCAT---CCCCGCCGCCGCC---GCCGTGCCCCGAACTGGCGCCGCGGAGCGTGAGGTGGAGAGGGCGGAGGTCGAGCC
GACGAGGAAGGAAGCCACGACGCCGGACGTGCTGTCCGTGGCTGATGTGCTGCGGAAGGAGGAGGAGGA---CGTCGGCG
ATGACGAGGAGAGGTTCTCGGACGCGCTGGACACGCTCTCCCGCACAGAGTCCTTCACCGTGAACTGCAGCG--------
-TCAGCGGTCTCAGCGGCGTGCCGGACCGCCCCGCGGGTGCGGGTGCGGCCGCCAGCGCCGAGCCCGGCGCCCGCGGCCT
CATGATGGACCGCTTCCTACCGGCCGCACAGGCGGTGGCCGTGGGCTCCCCGCAGTACACCTTCCGCAAGGCCAGTGTAG
CTGGCTCCACCGGCAACTCTGCCCGCGAGCATGCGCATGCCGCTGCGGCCAATTGGAGAATGGGCAGCGATGATGATCGC
GTCAGGAGAACACCTGTCCAGCTCCCTTACCAGAATCTGCCTCCCAATTATTTGTCTTGCAACTATCCCAGACGCGATGA
GCATGAAGAAGAGGAGGAAGAAGAGGATGAGGATGACTTCGACGTACACAGTACCCGAGGTTTTGCATCCAAGGGGTGTG
GTTTGCTCCCTGGATTGTGCGTAAAAACCTCCTTGTTACTACTGAATCCAATGCCTATGATGAAGGGTGGCAAGGGGCGT
CGGGGAGGAAGAGGCAGGGGATTGGTATCCAAAGGCAGGGGCCAGAAGGCACCGAGCCCTCTTGCCCGGAGCTCACAACG
TAAGAATCTTGGCTGTGATTCTAATGGGGTAAGCAGATGCACACAACAATGCTTCATGAATTCAGAGTTATGTTGCTTCT
TGACAATTTCAGGAGTGGTAGTTCTAAACATCTCAATCTCTGTTATATTGCAGCAATACTGGGAGGAAGTTTATAAGCAC
AAGTTGGAACAGAAGTACATTAACCAAGGAGAGGATAGGAGGAGCAAGCTGACAAGTGAGTCGAACCATCTGACATTCTG
GAGTGACTCTCAAACTGGCGATGGGTCTTCACCATTCCGCCACTCCATAGGTGGTGGCATGTCTCCCTACCGCCGCGACG
TTGCCTTGTCACCATCACGTAAAGCAAATGGGTCATTTGAAGTAAGAGATAAAGATGAGAAAATGAGTAGAAGCAATGGC
TCTAGCTCACTTGGAATAGACCATGATCATGGCTCGTTGCTTGGATCAGATCACAGTTCTTTGAAGGGATCAAGCTCCAT
GAGCTCAGGGGGCGATAGAACATTGCATGAAGATTCAATGGATCACCGTTCAGGTATTGATTCAGAAGCTAGTCAGTTGA
CCCTGCCATTGGATCCAAAGGCATCTTTGAATTCAGGGTGTGATGTTCAACATGGAGGACACCAGATAGTCAGAAGTAAC
AGCATAGTGGAAGTTCAAGACAATGATACGTTGACAAAAACAATCGCCAAAGTGCCAGAATCCATTTCATTAATACCTTC
CGGAAACGCAGGATCAGTAAAACTGGATGATAGAAAAACTCATGATAGTAGTCAGGATGTTCCAGTACATTCGGAAGATA
ATATCGCCGTCAAGAAGGAAAGTATGCCTTTGCAATTTCTAATGCCGTTACCTGTCCCAAAGTCGCCTTCAGATTCTTGG
CTTTCTCGCAATTTGCCATCTGTGAAGAATAAACCACCTGCACCATCTTTTCTTGGAATCCAAGTACAGTCCAAGAAACA
AGCTCCCTGGGCCTCCGCACATCCAAAGGAGAATGATCTTAAACCTCCCAGGACACGCCAAATAAGATTTGCAGATGTAA
TTCATAACTTCACTCTGTTCTGCCTATGTTTCTATTCATCTTACTTCTCAGAGCCATTACTGACTGTTTTTATTTGCCTG
CTTATTTAGGTGGTGGAGAGGCCTTATTATCTGGATACTGAGATATGATATCTTCCTTTGAGACCAGTATATATTCATGA
TATGATTCCTGGGGGGGACATCAGTCCTATATCTGCGACTGCCAGCGCCCAATGGTTAGGCATAGAGGTGCCCTGTTTTG
CTGTTGTAGTGATGGCTGGGTACCACTTACCAGCGATCCAGCATGTTGGTAAATTCGATGCACATGCCTGTTTGCGTACT
ATTTGCTTTATGTTGCCCAAGGTATGTTGGTAGTGGTTTAGCTCTGTTGCAAATCGTATTTCTATACAGGATTGCTTCTG
TTTGCTTCATCTTACTGTCCATAAAATATGTAATACTGTTTACTCTGTAAAAACGTTGAGTTGATCTTCAGTTGTATCAT
AGGATGCAATTCCAATATAAGTCAGCCTTTTGTTCCCAAGACATTTCCTGTGCAATGTAAATGGCATCTCTCTGGTGATG
CATGTCTTGCTAGTTTCCAGTAATACTGGCATTACCTACTGGAACAGCATATA-GTGCCTTATCTGGTTTTGTGTAGACA
GACAGACTTCGTCATGTCATAGCCTTTTTCTTGTATTTTTCAAAACAAGCTTATTCAGTGTATGTCATGTCTAGCAATTG
CATCTGTCAGGTTT-TGTTGGTGATTGGTTTTTAGATGGAAAATGTATATCACATTTTTTTTTCACCATAAAAAGGGCAA
CCTGGTGCATGTAGCTCCCGCTTGCGCAGGGTCCAGGGAAGGGTCCGACCACTTTGGGTCTATAGTACGCAGCCTTTCCC
TACATTTTTGTCACCATAGTGTATATAAAAATATAGCACAACTCGCATGCAGAAAAGTTGGAGACTCTGAGCTTCAGATG
TGCTCTAAAAAACAGCCTATATATTTGGTGTATAATCTCAGTTCTCAAC-----TAAGACATAGGATTCTCATAACGAAG
TGGTAATCCACATCTGCACTCTTGTTTTGTGTTGACTTGTTACATTCTGTTTATCGAAGTGGTTGAC-------------
--------------TTGGTGCATCATGTCTCTCCGTTATTTTACGTCTCTCCGTTATTTTACGGGGAAGTATTGGTACTG
AACTTATTATTATTGAACGAGTGATTCAACTAGGACACTGCTGATGCTGTTATGTTGGTTGAGAC-TAAGATATTTTCTT
ATGGCTATTAAGCATCCAAAGACCTAGCTGCTCTTGATTCGAACACGCTTAGAGAGCAGATAGATATTCCGC--------
-----AAATCGACCTGTATGTGTTC-AAAAAGGAAAGACTGATTTGTTCAGATACTATATGTATTCCGTATTTGC-----
--------ACTGCAAAAATGGACCTGTATGTGTTAAAAAAGGGAGACTGATTTTGTTAATCATATT-
>chr3A_216
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---------------------------------------TGCATTGTTTTGCTCGAAGAAGAG------CGTAGGATAGA
AGTGAAAATTCGCAGTGAAAAAGTAGAATGTGCAAACAGTAGAAAAATGCAAATTAT---TAGGCGACCGAGCCCTGCTC
CATCAGATCATCAGATAATAAACAAACCAAGGGGGAGAGCCGACCAGATTCCTACTCAATTCACACACACGCGCGCGCGC
GCGCGTAGGCGCCTGGAGTGGCAACCCGTGCCTGCCTGCTTCATACAGTAACTTGGCCTCC-------------------
-GATCCGCTCACGTCTGAACACCAAGCACAGTAGGAGAATTTATAAGTACAAAAACAAA--CAGGGCAGGGCAGCCATGG
ATGCGTTTGCCGAGTAGAGTAGCCGTCGAACACTGGACTAGAGCCGATGGTGCTGGCATCACCTTTTTAGGCAGATCGCG
CAGACTTTTTCCTCCCCAGTCCCCACG-------GCACCGTCGTTTGACGCGAGCACCCACCACGCACGCACCCGTGTCA
CCATCCCTCGCCGCACGCGCACCATTACACTAGAGCGAGTAGCAAATAGCACGCCGCACCGCCGCCCCACCGCGACCCGT
CACTCCGCACTCGTGGTGGAGTGGAGAGCGTGGCTGGCGGCGGGCCTGCCTCTTCCTCTTCCTCT----TCCTAGCGGCA
CTAGTAGGAGTAG------CCGGTAAACCCGCACCTAAACCGCAGTCTCCCATCGCCACACCCCGCGGCTCGGCACGGGC
ACGGCACAGATCTT----------CCCACTCCACCCCGCCGGGTCGCGCGCGGCGGCCGAAGCACGCGAGCGAGCGAGCC
CTTTCCGGCCGCCTACGCCTCGGGGGCGGACGCGCGCGGATCGCGTCATGGCGGAGGCGGGCAAGCGGGTCGACCTGGCC
GCGCCGCTGCGCTCGGCGCGCCTGCCCTACCACAAGGCCGACCTCGACTCCGGCCCCGTCCGCCACCCCGGCGCCGTGCC
CTTCGTCTGGGAGCACAGCCCCGGCCAGCCCAAGAGCGTCCGCACCCGCCGCCCGCCTC------CGCCCTCGCCCTCGC
AGCCGCGGCTGGAGGAGAGCGGCGCCACCCGCTACCACGACGCCCTGGGCGAGCGCGAGCGCGATCGCGCACTGCCAAAC
GGCGCCGCCCCCGCCCCCGCCCCTGCCGTGCCCCGAACTGGCGCCGCGGAGCGTGAGGCGGAGAGGGCGGAGGTCGAGC-
--CGAGGAAGGAAGCCACGACGCCGGACGTGCTCTCCGTGGCCGATGTGCTGCGGAAGGAGGAGGAGGAGGACGCCGGCG
ATGACGAGGAGAGGTTCTCGGACGCGCTGGACACGCTCTCCCGCACAGAGTCCTTCACCGTGAACTGCAGTGTCAGCGGT
CTCAGCGGTCTCAGCGGCGTGCCGGACCGCCCGGCCGGTGCGACCGCCA---GCGCCGCCGAGCCCGGCGCCCGCGGCTT
CATGATGGACCGCTTCCTGCCGGCCGCGCAGGCGGTGGCCGTGGGCTCCCCGCAGTACACCTTCCGCAAGGCCAGTGCAG
CTGGCTCCACCGGCAACTCTGCCCGCGAGCATGCGCATGCCGCTGCGGCCAATTGGAGGATGGGCAGCGATGATGATCGC
GTCAGGAGGACGCCGGTCCAGCTCCCTTACCAGAATCTTCCTCCCAATTATTTGTCTTGCAACTATCCCAGACGCGATGA
GCATGGGGAGGAGGAGGTGGAAGAAGATGATGATGACTTCGACGTACATAGTACCCGAGGTTTTGCATCCAAGGGGTGTG
GTTTGCTCCCTGGATTGTGTGTAAAAACCTCCTTGTTACTACTTAATCCAATGCCTATGATGAAGGGTGGCAAGGCAAGT
CGAGCAGGGAGAGGTAGGGGATTGGCATCCAAAGGCAGGGGCCAGAAAGCACCGAGCCCTCTTGCCCGGAGCTCACAACG
TAAGAATCTTGGCTGTGATTCTAATGGGGTAAGCAGATGCACACAACAATGCTTCACGAATTCAGAGTTTTAT-------
------------GAGTGATAGTTCTAAACATCTCAGTCTTATTTACACTGCAGCAATACTGGGAGGAAGTTTATAAGCAC
AAGCTGGAACAAAAGTACATTAACCAAGGAGAGGATAGGAGGAGCAAGCTGACAAGTGAGTCGAACCATCTGACATTCTG
GAGTGACTCTCAAACTGGCGATGGGTCTTCACCATTCCGCCACTCCATAGGTGGTGGCATGTCTCCCTACCGCCGCGACG
TTGCCTTATCACCATCACATAAAGCAAATGGGTCATTTGAAGTAAGAGATAAAGATGAGAAAATGAGTAGAAGCAATGGC
TCTAGCTCACTTGGAATAGACCATGATCATGGCTCGTTGCTTGGATCAGATCACAGTAGTTTGAAGGGATCAAGCTCCAT
GAGCTCAGGGGTCGATAGAACATTGCATGAAGATTCAATGGATCATCGTTCAGGTATTGATTCAGAGACTAGCCAGTTGA
CTGTGGTACTGGATCCAAAGGCATCTTTGAATTCAGGGTGTGATGTTCAACATGGTGGACGGCAGATAGTCAGAAGTAAC
AGCATAGTGGAAGCTCAAGACAATGATACATTGACAGAAAAGATTGCCAAAGTACCGGAATCCGCTTCATTAATACCTTC
CGGAAATGCAGGATCAGTAACACTGGATGATAGAAAAAGTCATGATAGTAGTCAGGATGTTCCAATACATTCAGAAGATA
ATATCGCTGTCAAGAAGGAAAGCATGCCTTTGCAATTTCTAATGCCGCTACCTGTCCCGAAGTCGCCTTCAGATTCCTGG
CTTTCTCGCAGTTTGCCATCTGTGAAGAATAAACCACCTCCTCCATCTTTTCTTGGAATCCAAGTACAGTCGAGGAAACA
AGCTCCGTGGGTCTCGGCACATCCAAAGGAGAATGATCTTAAACCTCCCAGGCCACGCCAAATAAGATTTGCAGATGTAA
TACATAACTTCACTCTGTTCTGCCTATGTTTCTGTTCATCTTACTTCTCAGAGCCATTACTGACT--TTTTATTTGCCTG
CTTATTTAGGTGGTGGAGAGGCCTTATTATTTGGATACTGAGATATGATATCTTCCCTTGAGACCAGTATATATTCATGA
TATGATTCCTGGGGGGGACATCAGTCCTATATCTGCGACTGCCAGCGCCCAATGGTTAGGCATAGAGGTGCCCTGTTTTG
CTGTTGTAGTGATGGCTGGGTACCACTTACCAGCGGTCCAGCATGTTGGTAAATTCGATGCGCATGCCTGTTTGCATACT
ATTTGCTTTATGTTGCCCAAGGTATGTTGGTAGTGGTTTAGCTCTGTTGCAAATCGTATTTCTATACAGGATTGCTTCTG
TTTGCTTCATCTTACTGTCCATAAAATATGTAATACTGTTTACTCTGTAAAAACGTTGAGTTGATCTGCAGTTGTATCAT
AGGATGCAATTCCAATATAAGTCAGCCTTTTGCTTCCAAGACATTTCCTGTGCAATGTAAATAGCATCTCTCTGGTGATG
CATGCCTTGCTAGTTTCCAGTAATACTGGCATTACCTACTAGAACGGCATATAAGTGCCTTATCTGGTTTTGTGTAGATA
AAAAGACTTCGTCATGTCATAGCCTTTTTCTTGTATTTTTCAAAACAAGTTTACTCAGTGTATGTCATGTCTAGCAATTA
CATCTGTCATGTTTTTGTTGGTGATTGGTTTTGAGATGGAAAATATATATCACAT-------------------------
--------------------------------------------------------------------------------
----TTTTTGTCACCATAATGT--------ATATAGCACAACTCGCATGCAGAAAGCCTGGAAACTGTGAGCTTCAGATG
TGCTCTACAAAACAGCCTATAAGTTTGGTGTATGATCTAAGTTCTCAAGTACAGTAAGACATAGGATTCTCATAACGAAG
TGGTAATCCACATATGCACTCTTGTTTTGCGTTGACTTGGTACATTCTGTTTATCGAAGTGGTTATCCACTCAATCTTTC
TTGTTTGATTTTATTTGGTGCA------------------TTATGTCTCTCCGTTATTTTACGGGGAAGTATTGGCACTG
AACTGATTATTATTGAACGAGTGATTCAACAAGGACACTGCCGATGC------------------------TATTTTCTT
GTGGCTATTAAGCATCAAAAGCCTTTGCTGCTCTTGATTCAAATGCGCGTAGAGAGCAGATATATACTACCTCCGTAAAC
TAATATAAGAGCGTTTAGAATACTAAAGTAGTAATCTAAACACTCTTATATTAGTTTACAGAGGAAGTACTATGTATTCT
GAGCTGGTACTGCAAAAATGGACCTGTATGTGTTAAAAAAGGAAAGACTGATTTATTCAGATACTAT
>SNPs
-----------------------S----------------------------S---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-----------------------S---------------S------SS-SSSSSSSSSSSS-----S------S------
-SS----S-----S---------S-SSSSSSSSSSSSSS-----S------------------SSSSSS-----------
-S-S------SSS--S--------SS-SS--------S-------------------SSS---S----------------
---S--------------------------------------------------------------S-S-----SSS-SS
SS---------------------------------------S----------SS-------SSSSSSSSSSSSSSSSSSS
S----S----------------S-----------SS----SSS----SSSS-S--SS-SSS-----------S-------
--SSSSSS-------------------S------S--------------S------------------------------
--------------------------S-----------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------------------------------------------S----------------
---------------------------------------------------------------------S----------
-------------SSSSSSSSSSS-----S---------------S----------------------------------
---S-S---------------------------------------------------S--S-------------------
--------------------------S------------------S----------------------------------
-------------------------------------------------------------------S------------
----------------S----------S---------S---------------S--------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------------S----------------------------------------------
S-----------------------------S-------------------------------------------------
-------------SS-------S--------------S--------------------S---------------------
-S------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S---------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------S-------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S-----------S--------------
----------------------S------------------------------------------------SS-SSSS--
-SSS-----S-------------------------------S--------------------------------------
------------------------------------------------------------------S
>forward_930
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TCCAACACTAGAGCCGATGC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>reverse_2241
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCATGAAGAGGAGGAGGAGGA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------
>forward_987
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTTTCTCCCCAGTCCCCACT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>reverse_2379
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------AATGAAGGGTGGCAAGGCG---
--------------------------------------------------------------------------------
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>forward_2343
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----GCTCCCTGGTCTGTGTGTC---------------------------------------------------------
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>reverse_3149
--------------------------------------------------------------------------------
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----------------------------TGTTGACAAAAACAATCGCCA-------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2836
--------------------------------------------------------------------------------
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---------------CACGTAAAGCGAATGGGTCAC--------------------------------------------
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>reverse_4875
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGGTAC
TGCAAAAATGGACCTG----------------------------------------------------------------
-------------------------------------------------------------------
