>input_sequence_35842
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-------------------------------------------------ATGGGGACGCAAGCGGCGCCGGCGACCAGCG
AGATCGCGGCGGTGGGTGTAATAGGCGCGGGGCAGATGGGCTCGGGCATCGCCCAGCTCGCCGCCGTGGCCGGCTGCGGC
GTCTTCCTCCTCGACTCCGACCCCGCCGCCCTCTCCCGCGCCGCCGCCTCCATCTCCTCCTCCCTCGGCCGCCTCGTCTC
CAAG----------------TGAGGACCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCTGTTCGTTGACACTTCTAGTCT
CGCCTGGTCACAGGTTGCGTGCGATGACTCCGTGAAGCGGATAAAGTGCGTCTCCGATGTGGAGGAGCTGCGGGGCGTGG
ATCTGGTGATTGAGGCCATTGTTGAGTCCGAAGATGTCAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCT
TCTGCCATTCTTGCCTCCAACACCAGCTCCATTTCTATAACCCGGCTTGCCTCCGCTACCAGCCGCCCCTCTCAGGTGAC
CACTAATCAGGCTTATCTCAGCAGTCGCTTTCAGCTACACCAGTTGCTTGCTTGTCCGGAATTTACATAGGATGGTGATG
CAGACCTTATCAATTGCAAGTGGGGCGGCAGTTTG-GAGTTATAACGACCCCGTTTGTTATGTTGGCGGCTAAATTTGCC
TCTGTCATGCATGCTACTCCCTCCGTTCCTAAATACTTGTCTTTCTAGGCATTTCAACAACAAGTGACTACATACGGAGC
AAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATCCGTATGTAGTAGTCATTTGAAATGTCTAGAAAGACAAA
TATTTAGGAACAGAGGGAGTATTACATAGGATTGCATACTCTACAACTTCAGAACATGTCT------------CAAGGCA
CTCCTGTAGCTTCTTAATTTTATCAATTCTCTCGTTTTCATGTCTTTATTGTTTTTGGAGCTTCTCTCCATGATAATAAG
AAGTTAAAGAGATTTCCATGTTACAGGTGATCGGCATGCACTTTTTCAACCCTCCTCCTATAATGAAGCTGGTTGAAATC
ATACGAGGAGCTGATACGTCAGAAGAGATTTTCTCTCGAGTTAAATCTTTTTCTGAAAGGTAAGTGAAAGCATCATATTG
CCCTGCCTAAGCTCACTTTAACATAGCCTTAAATGTGATCTTGTTTCTGCGTATTACTATAGCAACTCTGAAGTGGAACC
TACTTATGTAACTGGTTGCTGTTTAGATATAAAGTTCTATCCAGAACAAGCGTTCTGTAAACACAAACGTACCACTTCCT
ATTGTTAATGGATTCGTTGAGAACACAACAAACTTGCTATACTCTGGAGTTTAGGTATATTTTAGGTTCCAAGTCAGTCT
TTACCTGGTAACCTAGCATTTTCATTGTAAAGAAAATGTGTCTTACCTTTGAAAGACCTCATTTGGCCTGTTTAGTTTTT
GGTGTGAACAATATTTTTAGCCCC---GAGAACTACCATGCTACCTACTAAACCACTTAAAATTTGTGCCACATACGTGG
ATGCATTAGCGCAGATCTTAGACTAAGGTATAATTGGTTCAGCCAAGCTGACTCTG-----ATTTCCCTTTTAACCTTGA
AATTGTCTAATGATTTTGATCTTTGCAGGATTGGGAAGACCGTTATATGTTCACAAGATTACCCTGGCTTCATTGTGAAC
CGCATCCTAATGCCGATGATCAATGAAGCATTTTGGGCACTTTACACTGGGGTAGCAACCAAAGAGGACATCGACACAGG
GATGAAGCTCGGCACGAATCATCCAATGGGCCCTCTGCAGCTTGCGGACTTCATAGGGTTAGATGTTTGCCTCTCAGTAC
TTAGGGTGCTCCACAACGGGCTAGGAGATAACAAGTACAGCCCTTGCCCTCTGCTTGTCCAATATGTCGACGCCGGACGA
CTTGGAAAGAAGCGGGGACTAGGCGTGTACTCTTACGGGAGAAGCTCTTCATCCGTTAAACCCAAGTCGTCCCTGTGA--
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---------------------------------------------------------------
>chr3A_1_TraesCS3A01G327700
CACGCGCAGGCGTGGCCGAGTTACAGGCTTACAGCAGCGAGCAATCGGACAGCATCGGAGCATCCCATGGGCGACCCAAT
CGAGCCACGCACAAACCAGATAAGGTTAGGAGAGACAAGGGCACTTTGGTCCTTTCAAGCGCAGATAAATGAAAAAACTA
AAGAAAAAACAGGAAAACGGGGGAAATGGCATAGTAATCAAGATGTCCATGAGCTGGGTGGCATTTTTGAGAAGGCCATC
TTGAGAGTGGTATTTTTGCGAAGCCCAATCTTTAAAGTGGCAAATGTCTAATTTTCTCGTGTTACTCCTGTTGGAAATAT
GAGCAATTTACCGAATGATTTTATTAACAGAAATACTAGATAAAACATGACTAATATAGTAGAGAAAGCATGACTAATAT
AGTAGAGATAAAACAAGTCATGCGTTCTGACAGAGAAAAGGAAAATAGCTTCTGCATATATGAACCGTAGCCTATCATAT
CTAAAGTAGACAGAAT----------------------------------------------------------------
--CAGAACCTTCAACAGGAAAGACAAGAACACGTACT-------------------------------------------
--CTGCCATGTCGTCGAGGAGGTCGTGGACGTCGGGGAAGAA---------------GTCGTCGTCGGCAACCGAATCGC
CCGTGATGAAGCAGCCAGTAGTCGTGGACTTG------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------GGAGCGCGCGTGGATG
TCCCTCTTGTTCTCATGCTCATACATGTGGGGAAAGAT-CTCTCTTATAAAGAGGTCCAACTCCCTCTAAACTAGCAATG
TGGGACTAAACTTTTGTTCCACCTCTTGCCTTACACAAATGAGCTGCGTGGGCCTCTAGGATTTATTAGGAATTTTTGAA
ACTGCTATTGGGATAGGCCCAAAATAGACAAAATTCCAGCAACTCGCATTGTGAGTAGTCTAAGCAAGATCAAGCAGTAT
CGGCCCCACGACCACCACGCCAGAGCATACGCC-ATACGCCCAGGGCTGAAGCGTAGCAGGTGCAGAGAACACGACACGG
AAGGCAGAGATAACCCCAACAAAC---------TCCGAAGAAACGAAGCATGGGGACGCAAGCGGCGCCGGCGACCAGCG
AGATCGCGGCGGTGGGTGTAATAGGCGCGGGGCAGATGGGCTCGGGCATCGCCCAGCTCGCCGCCGTGGCCGGCTGCGGC
GTCTTCCTCCTCGACTCCGACCCCGCCGCCCTCTCCCGCGCCGCCGCCTCCATCTCCTCCTCCCTCGGCCGCCTCGTCTC
CAAG----------------TGAGGACCCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCTGTTCGTTGACACTTCTAGTCT
CGCCTGGTCACAGGTTGCGTGCGATGACTCCGTGAAGCGGATAAAGTGCGTCTCCGATGTGGAGGAGCTGCGGGGCGTGG
ATCTGGTGATTGAGGCCATTGTTGAGTCCGAAGATGTCAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCT
TCTGCCATTCTTGCCTCCAACACCAGCTCCATTTCTATAACCCGGCTTGCCTCCGCTACCAGCCGCCCCTCTCAGGTGAC
CACTAATCAGGCTTATCTCAGCAGTCGCTTTCAGCTACACCAGTTGCTTGCTTGTCCGGAATTTACATAGGATGGTGATG
CAGACCTTATCAATTGCAAGTGGGGCGGCAGTTTG-GAGTTATAACGACCCCGTTTGTTATGTTGGCGGCTAAATTTGCC
TCTGTCATGCATGCTACTCCCTCCGTTCCTAAATACTTGTCTTTCTAGGCATTTCAACAACAAGTGACTACATACGGAGC
AAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATCCGTATGTAGTAGTCATTTGAAATGTCTAGAAAGACAAA
TATTTAGGAACAGAGGGAGTATTACATAGGATTGCATACTCTACAACTTCAGAACATGTCT------------CAAGGCA
CTCCTGTAGCTTCTTAATTTTATCAATTCTCTCGTTTTCATGTCTTTATTGTTTTTGGAGCTTCTCTCCATGATAATAAG
AAGTTAAAGAGATTTCCATGTTACAGGTGATCGGCATGCACTTTTTCAACCCTCCTCCTATAATGAAGCTGGTTGAAATC
ATACGAGGAGCTGATACGTCAGAAGAGATTTTCTCTCGAGTTAAATCTTTTTCTGAAAGGTAAGTGAAAGCATCATATTG
CCCTGCCTAAGCTCACTTTAACATAGCCTTAAATGTGATCTTGTTTCTGCGTATTACTATAGCAACTCTGAAGTGGAACC
TACTTATGTAACTGGTTGCTGTTTAGATATAAAGTTCTATCCAGAACAAGCGTTCTGTAAACACAAACGTACCACTTCCT
ATTGTTAATGGATTCGTTGAGAACACAACAAACTTGCTATACTCTGGAGTTTAGGTATATTTTAGGTTCCAAGTCAGTCT
TTACCTGGTAACCTAGCATTTTCATTGTAAAGAAAATGTGTCTTACCTTTGAAAGACCTCATTTGGCCTGTTTAGTTTTT
GGTGTGAACAATATTTTTAGCCCC---GAGAACTACCATGCTACCTACTAAACCACTTAAAATTTGTGCCACATACGTGG
ATGCATTAGCGCAGATCTTAGACTAAGGTATAATTGGTTCAGCCAAGCTGACTCTG-----ATTTCCCTTTTAACCTTGA
AATTGTCTAATGATTTTGATCTTTGCAGGATTGGGAAGACCGTTATATGTTCACAAGATTACCCTGGCTTCATTGTGAAC
CGCATCCTAATGCCGATGATCAATGAAGCATTTTGGGCACTTTACACTGGGGTAGCAACCAAAGAGGACATCGACACAGG
GATGAAGCTCGGCACGAATCATCCAATGGGCCCTCTGCAGCTTGCGGACTTCATAGGGTTAGATGTTTGCCTCTCAGTAC
TTAGGGTGCTCCACAACGGGCTAGGAGATAACAAGTACAGCCCTTGCCCTCTGCTTGTCCAATATGTCGACGCCGGACGA
CTTGGAAAGAAGCGGGGACTAGGCGTGTACTCTTACGGGAGAAGCTCTTCATCCGTTAAACCCAAGTCGTCCCTGTGAAG
TGTGAACATATCCATGCGGCTGTTGAGCAAAGAAATGAAATCGTGTGTGTACTCTCTGGACGAAAACAAAAGGACGAAAA
GTAGTAGTACTTGTGGTCACTGAAACAATGGGTGTACTTTGTATGCACTTTGTATATCAGTGGAAGAAAACAAAACGACG
AAAAGTACTAGTACTTGTGGTCACTAGCATCGGAATATAACAGG------------------------------------
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CTCACGCGGGCTTGGATTTGTAGAATCGTCAAACAAGCTTATCTAAAACAATGGGTGTTTACTGGTTCCAGTTACCATGT
GAATCTTTTACATGTAAAAATCATGAAATTTACATA--CTAAGGG-CCTGAAAATCCATGCCCTGCGCTGTTCCGTACTC
TATGCTGACTGTGGTATAG----TATGCAGTTTCAAGCGTTACAGTCTTACAAGTTACAATGATCAGATCGGCAGCTCCA
GAAATGACCCCTACGCTGTCGGAACGTGCACAGCACACAGCAGCAGCCGTGCTGTCCAAGCACAGCAA------------
------------------------------------------------GTCACCAGAGAAAGACATCACGACCTTGAACC
AAAAGAAGCCACTGAACACGAACGATACCAAGTTTTTTTTTA-CACACATCATATTCCCCTCTATATTTAGCCCGATAAG
AAACTG-AAATTTGTGAGGTTCAGATAAAAGAATCCAACAAGTTCTCCAGACGAGTGTCAGTTGGTAACATATACTCCCT
CCGTTCGGAATTACTTGTCTCGAAAATGGATGTATCTATAACTAAAATACATCTAGATACACCCATTTCTGTGACAAGTA
ATTCCGAACGGAGGGAGTACATGACTGTGCTATGCTCTAGGTGAGACTGGGCCTTCACACGGATCAAACTTCACAATCGT
TCTTGCATCAGGGAGCAAAGGGTGCTTGAGTGGTCTGTGCCCTTTCTTGTACCAATAATTGATAATGTACGCTTCCAGTT
TTCTAACCTGAGGAATTAACACAAAGTCAGAATCAACTTGAGACTATGCAAAATATCTACGAA
>chr3A_376
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-------------------------------------------------------ATACTAGATAAAGCATGACTAATAT
AGTAGAGATAAAACAAGTCATGCGTTCTGACAGAGAGAAGGAAAATAGCTTCTGCATATATGAACCGTAGCCTATCATAT
CTAAAGTAGACAGAATAGCAAGTAGCATATATGAAGTAGAACCTAACATGTGTAGGACAAGGACTAGAACAAGGAACTGT
CGCAGAACCTTTAACAGGAAAGACAAGAACACGTACGGGATAGCAGCAGCAGAAGCGCTGTACTTGGGGTCGGTGTCCTC
GCCTGCCATGTCGTCGAGGAGGTCGTGGACGTCGGGGAAGAAGTCATCGTCGGGGAAGTCGTCGTCGGCGATCGGATCGT
CCGTGATGAAGCAGCCAGTAGTCGCGCTGAGCGCTCCCCAAAAACCTTATCACCCTTCTCCCGTACAGGACTCAAAAGGT
GCGGTTTCGGAGGCCTACTGTCCTGACCTGCGGTGCACGCCGCAAGCCGGGATGGGGAAGATCGTAGCAGCAGCGCAGTG
CTCAGGAACTTTGTGGCGAGAGGAAGGGGATCTTCTGGTGTGTCCCTCTGGAGAGGAGCGACCTCTCTTATATAGGCACA
GGAGAAGGACGCGAAGAGGCTGCGACGGGAGGTGAAGCAACGAAGGGAGACGAAGCGAACAGGCAGCGGCCGAAGAGGCG
CGCCGTTCGAATTCAGTGTCCACTACAGAAAAACGTTTCAACTCCCACGTGACCTTTCGTATACCCGTCGTGCGTGGCAA
AAATTTAGACATCGGCTCATTCCCGCAACCCGCGGCGCGGCGCGTCGGGGCGAGCGGCGGAGGAGGAGCGCGCGTGGATG
TCCCTCTTGTTCTCATGCTCATACATGTGGGGAAAGAACCTCCCTTATAAAGAGGTCCAACTCCCTCTAAACTAGTAATG
TGGGACTAAACTTTTGTTCCACCTCTTGCCTTGCACAAATGAGCTGCGTGGGCCTCTAGGATTTATTAGGAATTTCTGAA
ACTGCTATTGGGCTAGGCCCAAAATAGACAAAATTCCAGCA---------------------------------------
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>chr3B_862
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------------------------------------------------------------TAAGCAAGATCAAGCAGTAT
CGGCCCCACGACCACCAGTCCACCACGCCAAAGAATACGCCCAGTGCTGAAGCGTAGCAGGTGCCGAGAACACGCCAAGG
AAGGCAGAGATAACCCCAACAAAC---------TCCGAAGGAGCGAAGCATGGGGACGCAAGCGGCGCCGGCGGCTAGCG
AGATCGCGGCGGTGGGTGTGATCGGCGCGGGGCAGATGGGCTCGGGCATCGCCCAGCTCGCCGCCGCCGCCGGCTGCGGC
GTCTTCCTCCTCGACTCCGACCCCGCGGCCCTCTCCCGTGCCGTCGCCTCCATCTCCTCCTCCCTCGGCCGCCTCGTCTC
CAAGGGCCAGCTCTCCCAGGTGAAT-------CCCCTCGCCTCCCCCGCCTCGCAAATTAGGGCTAAGGTG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ACGCCGTTCGTTGACATTTCTAGTCT
CGCCTGGTCACAGGCTGCGTGCGATGATTCCGTCAAGCGGATAAAGTGCGTCTCCGATGTGCAAGAGCTGCGGGGCGTGG
ATCTGGTGATTGAGGCCATCGTTGAGTCCGAAGACGTCAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCT
TCTGCCATTCTTGCGTCCAACACCAGCTCCATTTCTATAACCCGGCTCGCCTCAGCTACTAGCCGCCCCTCTCAGGTGAC
CACCAAG--------TCTCAGCAGTCGCTTTTAACTACACCAGTTGCTTGCTTGTCCAGAATTTACATAGGACAGTGATG
CAGACCTTATCAGTTGCAAATGGGGCGGCAGTTTGTGAATTATAATGACCCCATTTATTATGTTGGCGGCTAGATTTGCC
TCTGCCGTGCATGCTA----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTACATAGGATTGCATACTCTACAACTTCAGAACATGTCTTCGAACATGTCTCAAGGCG
CTCCTGTAGTTTCATAATTTTATCAATCCTCTGGTTTTCGTGTCTTTATTGTTTTTGGAGCGTCTCTCCTTGATTATAAG
AAGTTGAAGAGATTTCCATGTTACAGGTGATAGGCATGCACTTTTTTAACCCTCCTCCTATAATGAAGCTGGTTGAAATA
ATACGAGGAGCTGATACATCCGAAGAGGTTTTCTCTCAAGTTAAATCTTTCTCTGAAAGGTAAGTGAAAGCATCATATTG
CC-TGCCTAAGATCACTTTAACATA-CCTTTAATGTGATCTTGTTTCTGTGAATTACTATAACAACTCTGAAGTAGAACC
TACTTATGTAACTGGTTGTTGTTTAGATATAA-GTTCTAGCCAGAACAAGCGTTCTGTAAACACAAATGTACCACTTCCT
ATTGTTAATGGATTCGTTGAGAACACAACAAAATTGCTATACTCTGGAGTTCAGGTAAACTTTAGGTCC-AAGTTGGTTT
TTACCTGGTAACCTAGCATTTTCATTGGAAAGAAAATGTGTCTTAACTTTGAAAGACATCAGTTGGCCTGTTTTGTTTTT
GGTGTGAACAATATTTTTGGCCCCAAGAACTG---CCATGCTACCTACTAAACCACTTAAAATTTGTGCCACATACTGG-
----ATTAGCACAGATCTGAGACT--GATATAATTGGTTCAGCCAAGCTGGCTCGAGACTTATTTGCCTTTTAACCATGA
AATTGTCTAATGATTTTGACCTTTGCAGGATTGGGAAGACCGTTATATGCTCACAAGATTACCCCGGCTTCATTGTAAAC
CGCATCCTAATGCCGATGATTAATGAAGCATTTTGGGCACTTTACACTGGGGTAGCAACCAAAGAGGACATCGACACAGG
GATGAAGCTCGGCACGAATCATCCAATGGGGCCTCTGCAGCTTGCTGACTTCATAGGGTTAGATGTTTGCCTTTCAGTAC
TTAGGGTGCTCCACAACGGGCTAGGAGATAACAAGTACAGCCCTTGCCCTCTTCTTGTCCAATATGTCGATGCCGGACGA
CTTGGAAAGAAGCGCGGACTAGGTGTATACTCTTACAGGAGAAACTCTTCATCCGTTAAACCCAAATCATCTC-------
TGTAAAAATATCAGCGCGGCTGTTGAGCAAAGAAATGAAGTTGTGTATGTACTCTGTAT---------------------
----------------------------------------------------------AGTGGAAGAAAACAAAAAAGAC
GAAAGGTG--GTACTTGTGGTCACTAAGCATCGGA-ATAACAGG------------------------------------
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CTTACGCGGGCTTGGTTTTGTAGAATTTTCAAATAAGCTTTTCTGAGACAATGGGTGTTTACTAGTTCAAGGTGCCATGT
GAAACTTTCACATGTAAAAATCATGAAATTTACATATACTTGGATACCTGAAAATCCATGCCCTAGGCTGTTCTGGACTC
TATGCTGACTGTGGCATAGTAGCTATGCAGTTACAAGCGTTACAGTCTTACAAGTTACAATG--TAGATCGGCAGCTCCG
GAAATTACCCCTACGCTGTTGGAGCGTGCG-------TAGCAGCAGCCGTGCTGTTCAAGCACAACAGCAGG--------
-------------------TCAGCAAAATAAATGCACTTCTGTTGATCGTCACCAGAGAAAGACATCACGACCTTGAACC
AAAAGAAGCCGCTGAACACGAACGATATCAAGTTCTTTTTACGCACACATCATATTCCCCTCCATATTCAGCTCAATAAG
GAACGGAAATTTTCTGAGGTTCAGATAAAAGAATCCAATGAGTTCTTCAGACGTGTGTCAGTTGGTACAAC---ATATAT
--------------------------------------------------------------------------------
--------------------ATCACTGTGCTATGCTCTAGGTGAGACTGGGTCTTCACATGGATCAAACTTCACAATCGT
TCTCGCATCAGGGAGCAAAGGGTGCTTAATTGGTCTGTGTCCTTTCTTGTACCAATAATTGATAATGTACGCTTCCAGCT
TTCTAACCTGAGGAAGCAACACAAGGTCAGAACCAACTTGAGACT--GCAAGATATCTACGAA
>chr3D_862
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------------------------------------------------------------TAAGCAAGATCAAGCAGTAT
CGGCCCCACCACCAG--------CACGCCAGAGAATACGCCCAGCGCTGAAGCGTAGCAGGTGCAGAGAACACGGCACGG
AAGGCAGAGATAACCGCACCAAACAAACTGAACTCCGAAGAAACGAAGCATGGGAACGCAAGCGGCGCCGGCGACCAGCG
AGATCGCGGCGGTGGGCGTGATCGGCGCGGGCCAGATGGGCTCGGGCATCGCCCAGCTCGCCGCCGCGGCCGGCTGCGGC
GTCTTCCTCGTCGACTCCGACCCCGCCGCCCTCTCCCGCGCCGTCGCCTCCATCTCCTCCTCCCTCGGGCGCCTCGTCTC
CAAGGGCCAGCTCTCCCAGGTGAGGACCCGACCCCCTCGCCTCCCCCACCTCGCAAA-----------GTG---------
--------------------------------------------------------------------------------
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------------------------------------------------------ACGCTGTTCGTTGACATTTCTAGTCT
CGCCTCGTCACAGGCTGCGTGCGATGATTCCGTCAAGCGGATAAAGTGCGTCTCCGATGTGCAAGAGCTGCGGGGCGTGG
ATCTGGTGATTGAGGCCATCGTCGAGTCCGAAGACATCAAGAAGAAGCTGTTCGTGGAGCTGGACAGGATCACCAAACCT
TCTGCTATTCTTGCCTCCAACACCAGCTCCATTTCTATAACCCGGCTTGCCTCTGCTACCGGCCGCCCCTCTCAGGTGAC
CACCAATCTGGCTCATCTCAGCAGTCGCCTTTAGCTACACCGGTTGATTGCTTGTCCAGAATTTACATAGGACAGTGATG
CAGACCTTATCAATTGCAAGTGGGGCGGCAGTTTGTGAATTATAACGACCC-GTTTGTTATGTTGGCGGCTAAATTTGCC
TCTGTCATGCATGCTA----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TCACATAGGATTGCATACTCTACAACCTCAGAACATGTGTCCGAACACGTCTCAAGGCA
CTCCTGTAGTTTCTTAATTT-ATCAATCCTCT-GTTTTCATGTCTTTATTGTTTTTGGAGCGTCTCTTCACGATTATAAG
AAGTTGAAGAGATTTCCATGTTACAGGTGATAGGCATGCACTTTTTCAACCCTCCTCCTATAATGAAGCTGGTTGAAATA
ATACGAGGAGCTGATACATCAGAAGAGGTTTTCTCTCAAGTTAAATCTTTTTCTGAAAGGTAAGGGAAAGCATCCTATTG
CCCTGCCTAAGCTCACTAAG-CATAGCCTTAAATGTGATCTTGTTTCTGCGTATTACTATAGCAACTCTGAAGTGGAACC
TACTTATGTAA-----------------------------CCAGAACAAGCGTTCTGTAAACACAAACCTACCACTTCCT
ATTGTTAATGGATTCGTTGAGAACACAACAAACTTACTATACTCTGGAGTTCAGGTAAACTTTAGGTCCCAAGTTAGTTT
TTACCTAGTAACCTAGCTTTTTCATTGTAAAGAAAATGTGTCTTACCTTTGAAAGACCTCATTTGGCATGTTTAGTTTTT
GGTGTGAACAATATTTTTAGCCCCAAGGAGAACTACCATGCTACCTACTAAACCACTTAAAATTTGTGCTACATAC-TGG
ATGCATTAGCACAGATCTGAGACTAAGATATAATTGGTTCAGCCAAGCTGGCTCGAGACTTATTTGCCTTTTAACCATGA
AATTGTCTAATGATTTTGATCTTTGCAGGATTGGGAAGACCGTTATATGCTCACAAGATTACCCCGGCTTCATTGTAAAC
CGCATCCTAATGCCGATGATTAATGAAGCATTTTGGGCACTTTACACGGGGGTAGCAACCAAAGAGGACATCGATACAGG
GATGAAGCTCGGCACAAATCATCCAATGGGCCCTCTGCAGCTTGCTGACTTCATAGGGTTAGATGTTTGCCTTTCAGTAC
TTAGGGTGCTCCACAACGGGCTAGGAGATAACAAGTACAGCCCTTGCCCTCTGCTTGTCCAATATGTCGACGCCGGACGA
CTTGGAAAGAAGCGGGGACTAGGTGTTTACTCTTACGGGAGAAGCTCTTCATCTGTTAAACCCAAGTCATCTC-------
TGTGAACATATCCATGTGGCTGTTGAGCGAAGAAATGAGGTTGTGTATG-------------------------------
------------------------------------------------------------------------------AC
GAAAGGTG--GTACTTGTGGTCACCAAGCATCGGA-ATAACAGGCTTAGGGCATGTACAATGGTTGATAAGATAAGTCTT
ATCTTAATTCTTGCATGTAATTTAGAGATGACAAAAAAATATGTCTACAATGGGTCATCTCTTAGTCTTATCTTTAATAA
CTAGCTATTCCTAAAAATATGACAAGATATATTGTGCTAAGAGATCATCTCTTGTCTTCTCTTAAATAAGAGAAGACAAA
CCTTTTCTTATGATTTCTCTCTCCTTCACCTCATCATTTATCCTACGTGTCACTCCTAAGATAGCACCATTATACATGCC
CTTACGCGGGCTTGGTTTTGTAGAATTGTCAAATAAGCTTACCCAAAACAATGGGTGTTTAGGGGTTCAAGGTGCCATGT
GAAACTTTTACATGTAAAAATCATGAAATTTACATA--CTTGGATACCTGAAAATCCATGCC-TGGGCTCTTCCAGACTC
TATACTGACTGTGACACAG----TATGCAGTTTCAAGCGTTACAGTCTTACAAGTTACAACGATTAGATCGGCAGCTCCA
GAAATTACCCCTACGCTGTTGGAGCGTGCG-------CAGCAGCAGCCGTGCTGTTCAAGCACAACAGCAGATCGGCAAA
ATAAATGCACTTCAGCAGATCGGCAACATAAATGCACTTCTGTTGATCGTCAC----------------GACCTTGAACC
AAAAGAAGCCGCTGAACATGAACGATATCAAGTTTTTTTT------ACATCATATTCCCCTCCATATTCAGCTCAATAAG
GAACGGAAATTTTCTGAGGTTCAGATATAAGAATCCAATGAGTTCTCCAGAAGCGTATCAGTTGGTAACAACATATACAT
--------------------------------------------------------------------------------
--------------------ATCACTGTGCTATGCTCTAGGTGAGACTGGGCCGTCACACGGATCAAACTTCACAATCGT
TCTCGCATCAGGGAGCAAAGGGTGCTTAATTGGTCTGTGTCCTTTCTTGTACCAATAATTGATAATGTACGCTTCCAGCT
TTCTAACCTGAGGAAGCAACACAAGGTCAGAACCAACTTGAGACT--GCAAAATA--------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S----------------
------------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-----------S------------------------S-------------------------------------------
---------------------------------------------------------------------S-S--S----S
------------------------S-SSSSSS------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S----S--------------------------------S----
--------------------------------S------------------------------------------S----
------------S----------------------------SSSSSSSSSSSSSSSSSSS--------------------
-----------------SS---SSS-SSSS-SS-----------S-----------------------------S-----
--------------------------------------------------------------------------------
-------------------S--S-------------------------------------------S-------------
-------------------------------------------S------------------------------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---------
--------------S------------S-----S---------------------------S-S----------------
-------------------S--------------S---------------------------------------------
-----------------------------------------------------S--------------------------
---S----S----S-----------------S-------------------------S--------------SS------
--------------------------------------S-----------------------------------------
----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
---------S-----------------S----S----------------------------S------------S-----
-----S-------------------------S-----------------------------------------------S
-----------------S---------S---------S------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------S------S----------------------------------------
---------------------------------------------------S-----S-S-------S------S---S-
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
----------S-------S--------S----------------------S---SS---------S----------S---
-------------------------------------------------S--------------S-----------S---
--------------------S-----------------------------------------------------------
---------------------------------------------S--------------------------S-------
--------------------------------------------------------------------------------
-----------------------S--S-----------------------------------------S--S-SSSSSSS
---------------------------------------S-S----S--------S-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SSSSS
S----SSSSS----------------SSSSSS-S-S--------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--S------------S----------S------S----------------------------------S--S-S------
---S------------------------------------SS-SS--------------------S---------S----
--------------S-------------------------------------------------S---------------
-----S-------------S---S-----SSSSSSSS------------------S--------S--S------------
--------------------------------------------------------------------------------
----------S----------------S------------SS--------------------S-----S---S-S-----
S---S----S---S------------------------SS-------------S----------------SSSSS-S-S-
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--S---------------------------------------------------------
---S-----------------------S-S---------S--------------------------------------S-
---------------SS-------S-------S------------SS----------------
>forward_102
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--AGCCACGCACAAACCAGATA----------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2329
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AGGCTTATCTCAGCAGTCGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_146
--------------------------------------------------------------------------------
----------------------------------------------TGGTCCTTTCAAGCGCAGAT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_2352
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CAGCTACACCAGTTGCTTGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_1792
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCTCCAAGTGAGGACCCGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------
>reverse_2832
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CGGCATGCACTTTTTCAACC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>forward_2510
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------ATGCTACTCCCTCCGTTCCT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------
>reverse_4545
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CAGATCGGCAGCTCCA
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
