>input_sequence_35829
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-------------------------------------------GGACAAAAAGGAATGGAATGAGGATCTAATTAGGCAG
ATTTTCTATCCTTTTGATGCAGATAAAATCTGCAAAATACCAATTCCGGTCTCTGATCTAACAGACCAAATAGCCTGGCA
CTAGGAAAAGAATGGAATTTTCACAGTTAGAAGCGCATACAAGTTGGCTGCAGCGGGCCTCCCACAAATGATTCAAAATT
CGTCAAGCTCATCTAGAGATCCTAATGACCGGAGCATTTGGGACCTAATTTGGAAGGCAAAAGTTCCCAGAAAAATTCGT
ATCTTCGGTTGGAGGGT-------------GGCCACAAATACGCTCGCCACAAAGGAGAACAAATGGAAGAGGACCCTTG
AGATAGATGCAACCTGCGACATCTGCGGTAATGGTGTAGAAGATGAGTTCCATGATGTGATCTCATGCACAAAAAGAAGG
AGCCTAAGACATGCTATGAGAGATGTCTGGAATTTACCTGTAGAAAATAGATTTTGGCATACATGTGAAGATTGGTTGCA
AGTTCTTCTCGACACGGAAAATGAGGATACACGAGCCAAAATCCTGCTACTTCTCTGGCGCTGTTGGTTCCTCAGGGAAG
ATTGCATCCGCAATGATGGCAAAGAATCAGTCAGCAGGTCAGTA-AATTTCTGACAAAGTACGCCGAGGAGCTACAGAAT
GCAACTAAACCAAAGGATTGGACAGTGGGAAGGGGTACTGGAGATAAGCTTGCGCGACCAA--------CTGATAACATG
AACAGGAAATGGGCTCCCCCTGCTGAAGGAGCTGCCAAGATCAACTCCTATGCTGCCTTTTTAGCTGATACCGGAGAGAG
CTCTGCTGGTGCGGTTGCAAGAGACAGCAGAGGACAAGTTTTCGTAGCCGTCTGCAAGAAACTTCCACTCTGTCATAGCT
GGAT-GAGGCTGAGTCCCGGGCTGTCCTAGTTGGCCTTCAAACCCTATCAGCCTTCTTTAATGGACAGGTGATCGTTGAG
ACAGATAACCTGATCGTGGCAAAGGAATTGGCCAGTCTGACCCCCTCACGTTCACCACTCTATGGCCTTCTAAGGGACAT
TCAGACTGCTACTGCGGCATTCGACACATGCAGTTTCAGCTGTGTGAGGAGAGACATCAATAAGCTTGCACATGGACTAG
CAGCTTTGACCAGGAGCGATGGAGATCAAGTGGTGTTTGCAAATGTCCCGGACAGCCTGAGACCACTGATGATTTCGGAA
TATACACCCGACCGTACTGGTAACTCTGAGTAGTTTTTTATTCTACTCTAGATCTTAAAAAAACATGGTCTAATATTTTA
TAAAATTGATTTGGTCCAATTTTGCAACAAATATATGGTAGGTCCTTCACAAAAAA-CTCATTTTAGGCATTCAAAATAT
CTCTCCGACATGTCATATGTGGTCTAGTGTGATTTCAAAATATTTCTTAACTATTTATATTGAACTTTTTTATTTATTCA
TAACTCAATTTGTCATTGAATTCAT--------------------T----------------------------------
-----------------------------ATACATTATACATTATTCATTAC-AATTTTTTCCTATTACCGGGTGTAGTT
ACTCCCACTTTTGTTTCATACGTTTTAGGTAGTATCTATCATATGGGAGAGTATGTACGCATAGTATGTAGTATGTAAGA
ATGTTTAGGTAGTATATATACTATTTTTGAGGTAGTATGTTGTATATTTTGAGCATACTCCTTTGTACGTACAAATATGT
ACGTATTTCACAAATATTATAAAAATATGGGCTCACATGCAATTTTTTCACATAACTCGCTTTAGAGTATCTTAGATATA
GTATGTGAACATACTAAAAATAATAAAGTGGAGTATATACTACCACATAATAGTATGTGAGAAATGGGTGTAACTACACC
CGGTAGTAGGATGCATTTTCCCTATATATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGACTTTTATTTTGGATCCTTGAAAATATTTGGTTACAATTGGTTTTACGAAAAATCTG----A------------
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>chr4A_1_TraesCS4A01G427700
CTTGCGACAAGGTGATCCCCTTAGTCCATATCTTTTCTTGTTTGTTGCAGACGGGCTAGTGCACTTGCTCAAGAAGGAGA
TGGCTGAGAACAATTTGACCCCCATAAAGATTGCTAGAAATAGCCCAGGCATATCAAACCTGCTGTTTGCGGATGACATC
TTGATCTTCTTCAAAGCGACGCCGGATCAGGCTGAATCTATCAAGAGAGTTCTAAATTCTTTTCAGAGGTCCACGGGGCA
GTTGTTGAGCGCGAGTGAGTGCTCGCTCTTGTTTAGCGAGGCCTGCCCGGCCGATACACGGGAAGAAATAAAAGGTATT-
CTTGGTGTGTCGTCACACACCTTTGAGAGTAAATACCTCGGGCTGCCTACCCCTGAAGGGAGGGTGAAGGATGACCAGTT
CCAACCTATCATGGATAGATTCCGAAAAAGGTGTAATGACTGGTCAGAAAAATTTATGTCATTCGCAGCCAAGGAGGTTC
ATGTGAAATCGGTTGTGCAAGCGCTTCCCACCTTCATCATGAGTGTTTTTTTGCTCTCAAAAGGCTTCTGCGAGAAATAT
GAGAGAATGATCAGGGACTTCTGGTGGGGGGATGAGAGGGGTCATAGAATGGTTCATTGGATGTCATGGGAACGGATGAC
AACGCCCAAAAGAGT-GGGGGCAGAGGCTTCAGAGATATGCACCTGTTTAACCAGGCCCTTCTGGCAAAGCAAGCTTGGA
GACTTATTCAGAACCCAGATAGCTTTTGCACCAGAGTTCTCAAATCTAAGTATTATCCTAATGGAAATTTATTGGATATA
GTTTTTGCTTCGGACGCATCCCCTGTGTGGAGAGATATTGAGTTCGGTCTGGAACTCCTAAAAAGAGGCCTAATATGGCG
TGTGGGAGATGG-AAAAGAATCCATATTCAAAGATGCCAATGGATTCCAAGGAGAGAAGGGCTTATGACAGCGACGTTCA
TTCGAAGGTCCAGGATTCGATGGGTTAACCAACTCATATTGCCGGACAAAAAGGAATGGAATGAGGATCTAATTAGGCAG
ATTTTCTATCCTTTTGATGCAGATAAAATCTGCAAAATACCAATTCCGGTCTCTGATCTAACAGACCAAATAGCCTGGCA
CTAGGAAAAGAATGGAATTTTCACAGTTAGAAGCGCATACAAGTTGGCTGCAGCGGGCCTCCCACAAATGATTCAAAATT
CGTCAAGCTCATCTAGAGATCCTAATGACCGGAGCATTTGGGACCTAATTTGGAAGGCAAAAGTTCCCAGAAAAATTCGT
ATCTTCGGTTGGAGGGT-------------GGCCACAAATACGCTCGCCACAAAGGAGAACAAATGGAAGAGGACCCTTG
AGATAGATGCAACCTGCGACATCTGCGGTAATGGTGTAGAAGATGAGTTCCATGATGTGATCTCATGCACAAAAAGAAGG
AGCCTAAGACATGCTATGAGAGATGTCTGGAATTTACCTGTAGAAAATAGATTTTGGCATACATGTGAAGATTGGTTGCA
AGTTCTTCTCGACACGGAAAATGAGGATACACGAGCCAAAATCCTGCTACTTCTCTGGCGCTGTTGGTTCCTCAGGGAAG
ATTGCATCCGCAATGATGGCAAAGAATCAGTCAGCAGGTCAGTA-AATTTCTGACAAAGTACGCCGAGGAGCTACAGAAT
GCAACTAAACCAAAGGATTGGACAGTGGGAAGGGGTACTGGAGATAAGCTTGCGCGACCAA--------CTGATAACATG
AACAGGAAATGGGCTCCCCCTGCTGAAGGAGCTGCCAAGATCAACTCCTATGCTGCCTTTTTAGCTGATACCGGAGAGAG
CTCTGCTGGTGCGGTTGCAAGAGACAGCAGAGGACAAGTTTTCGTAGCCGTCTGCAAGAAACTTCCACTCTGTCATAGCT
GGAT-GAGGCTGAGTCCCGGGCTGTCCTAGTTGGCCTTCAAACCCTATCAGCCTTCTTTAATGGACAGGTGATCGTTGAG
ACAGATAACCTGATCGTGGCAAAGGAATTGGCCAGTCTGACCCCCTCACGTTCACCACTCTATGGCCTTCTAAGGGACAT
TCAGACTGCTACTGCGGCATTCGACACATGCAGTTTCAGCTGTGTGAGGAGAGACATCAATAAGCTTGCACATGGACTAG
CAGCTTTGACCAGGAGCGATGGAGATCAAGTGGTGTTTGCAAATGTCCCGGACAGCCTGAGACCACTGATGATTTCGGAA
TATACACCCGACCGTACTGGTAACTCTGAGTAGTTTTTTATTCTACTCTAGATCTTAAAAAAACATGGTCTAATATTTTA
TAAAATTGATTTGGTCCAATTTTGCAACAAATATATGGTAGGTCCTTCACAAAAAA-CTCATTTTAGGCATTCAAAATAT
CTCTCCGACATGTCATATGTGGTCTAGTGTGATTTCAAAATATTTCTTAACTATTTATATTGAACTTTTTTATTTATTCA
TAACTCAATTTGTCATTGAATTCAT--------------------T----------------------------------
-----------------------------ATACATTATACATTATTCATTAC-AATTTTTTCCTATTACCGGGTGTAGTT
ACTCCCACTTTTGTTTCATACGTTTTAGGTAGTATCTATCATATGGGAGAGTATGTACGCATAGTATGTAGTATGTAAGA
ATGTTTAGGTAGTATATATACTATTTTTGAGGTAGTATGTTGTATATTTTGAGCATACTCCTTTGTACGTACAAATATGT
ACGTATTTCACAAATATTATAAAAATATGGGCTCACATGCAATTTTTTCACATAACTCGCTTTAGAGTATCTTAGATATA
GTATGTGAACATACTAAAAATAATAAAGTGGAGTATATACTACCACATAATAGTATGTGAGAAATGGGTGTAACTACACC
CGGTAGTAGGATGCATTTTCCCTATATATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGACTTTTATTTTGGATCCTTGAAAATATTTGGTTACAATTGGTTTTACGAAAAATCTG----AATAAATAATATC
ATATTACTCAGACTATATCCAGCCC-ATAATGTATTATAGTGAGTTCGCATACATTTTT-CATAGTATGCTTAAACATCT
AAATAAACTATTAAAGTGCTTTGGAGCATATGTATCTAACAAATAATTTGGTAGAATATTTTAGACTATGTT--TCTAGC
ATATAACTTGGTGGAGGTTCCAGGAGTACAAGTCTATCAAGTGTATGTGTAACTAAATAGATAATTCTAGAGTGTATGAA
GTGTCAACTAGTAATATGTACTCGAAACCCCATTTTT--GCTCTTTTGTTCAGGTTGCTTGTTTCAAATTAATTTGACAC
TCGGAGCTAAAATCGTGCAGTTGATAGCATCCATGTGTATTTTGAACTTGAACTTTCATATGTTTG-ATGTTGGTCATTT
GATTATTATTATTATTA---TTATTTGACAATGATTCTCCTTAGAGAAAACTGGTGTCATGTGCCTCAACATGTAACCCC
ATTTCAAAAATACCATCAACTTTGATTTTCTCCAACTCACACAAAACCAACATAATCCATATGAAATCAACTCAATCCGG
TAAGTTTTCAACCCACAGGCTGATAT-AAAAAACATTCATGGTTCCAAAAATAATGGTTACACTACAAGAAATACGGTCA
ATTATGACTCCCCATTTTGGTCGTTGATTCCTCATTCTTATCGTTTATTGACCTTTTTTGACCAAATTCAGAAGGTCAAC
AGTTGGCCGTCAAGAACGAACAAACATGACCTTTTGGGAAATTTGGTTGTAGCTAGACTAATGACAAAAATTTCAGAAAG
GTCATTACCCATTTGCCTGAGCCACATAGGATCTGATGTGGCTGAGCTGACGTGGAATTGTTAGTGATCAAATGGAATCA
TCATAAATTTCATAGCCCAGTCCACCAATCTAGCCTACATGGGCCTGGCCCAATCAAGCCTACATGGGCCTGACCCAACC
ATTAAAAATTCCACAGGCCAATCCACCAATGTAACCAAC
>chr3D_1
CTTGCGACAAGGTGA-CCCCTCAGCCCATATCTTTTCTTATTTGTCGCTGACGGACTAGTGCACCTGCTCAAGAAGGAGA
TGGTTCAGAACAACCTGACCCCCATAAAGATTGCTAGAAATAGCCCAGGCATTTCAAACCTCCTGTTCGCTGACGACAGC
TTGATCTTCTTCAAAGCAACGCCGGATCAGGCTGAATCTATAAAGAGGGTACTAAATTCTTTTCAGAGGTGTATTGGACA
GTTACTGAGTGCGAGCAAATGCTCACTCCTATTCAGT-----------GGCCGAAACACGAGAAGAGGTAAAAAAGCACC
CTTGGATTGTCTTCGCACACTTTTGAGAGCAAATACCTCAGGCTGCCAACACCGGAAGGAAGGATGAAAGATGACCACTT
CTAACCTATCATGGATAGATTGTGGAAAAGATGTAATGATTGGTCAGAAAAATTTATGTCGTACGCAGCTAAGGAGGTTC
ATGATCAATCGGTTGTGCAGGTGCTCCCCACCTTCATCTTGTGCGTATTCATGCTTTCCAAAGGCTTCTGTGAGAAATAT
GAAAGAATGATCAGGGATTTCTGCT-GGAAGATGAGGATGGTCACATGAAGGTTCATTGGATGTCATGGGAACGGTTGAC
AAAACCCAAAAGAGCAGGGGGCATCGGCTTTAGAGACATGCACCTGTTTAACCAAGCCCTCCTAGCGAAGCAAGGATGGA
GACTCATTCAGAACCTAGATAGTCTATCTGCCAGAGTCCTCGAATTCAAGTATTATCCTCACGGTAATATCATGGATACA
ATTTTTACTTCTGACGCATCTCCTATGTGGAGGGCTATTGAGTTCGGCTTGGAGCTACTAAAAAGAGGCCTAATCTGGCA
TGTGGGAGATGGCAAAAGAATCCAAATCCAAAGAGACCAATGGATCCCAAGGAGAGAAGGGCTTATGACGGCAAAATTCA
TCGAGAGGTCCAGGATCCATTGGGTTAACCAACTCATACAGCCAGATAAAAAGGAGTGGAACGAGGACCTAATCAGATAG
ACTTT-TATACATTCGATGCAGATGAAATATGCAAAATCCCAATCCTGGCCTTAGATGCGACAGATGAAATCGCTTGTCC
CTTTGAAAAGAATTGAATCTTCATGGTTAGGAGCGCGTACAAGTTGGCTGAGGCTGGCCTCCCACAAATGATTCAAAACC
CGTCTAGTTCATCCAGGGATCCAAATGATCGCAGTATTTGGGACCTAATTTGGAAGGCAAAAGTACCCAGGAAAGTTCGT
ATCTTTGGATGGAGGGTACGATTGGAGGGTGGCTACAAATACCCTTGCTACTAAGAAAAACAAATGGAAAGAT-CCCTTG
ACACAGATGCAACCTCCAACATTTGTGGAAATGGCTTGGAAGACGAATTCCATGTTGTGATCACATGCACAAAAAGTAGA
AGCTTGAGATATGCTATGAGGGAGGTCTGGAACCTACCTGCAGAAAACAGGTTTTGGCATACATGCGATGATTGGCTGCA
AGTCCTGCTTGACACAAAAAATGAGGACATCCATGCCAAAATCCTACTACTCCTCTGGCGCTACTAGTTCCTCAGGGAAG
ATTGCGTTCGCAGTAATGGCAGAGAAACAATCAGCAGGTCAGTTCAGTTTCTGACTCAGTATGTTGAGGAACTAAAAAGT
GCAAATGGGCCAGAGGATTGGACAGTGAGAAAGGGGACAGGGATAGAGGAGACATGCCTACCTAGCCGCCTGATAACATG
AACATGCAATGGATTCCCCCTGTACGAGGATATGTCAAGATCAACTCTAACGCTGCTTTTTTAGCTGAAAATGGAGAGAG
CTCTGCTGTTGCTATTGTGAGAGATTGGAGAGGATATGTATTTGCGGCCGTCTGCAAAAAGTTGCTGCACTGCCATAGTG
TGGAGGAAGCCGAGGCTCGGGCTGTCCAAGTCGGCCTACAGACCCTGACTGGTTCCTTTAGTGGTAAGATGATCGTTGAG
ATGGATAACCTGATCATTGCAAAGGAGCTAGCTGCTCAGTCTCCCACGTGCTCGCCTCTCTATGGCCTTATCATGGAATC
A-AGAATGATGCAGTAGCTTTCGACACCTGCAGTTTTAGCTATGTGAGAAGAGATAGAAATAAGCTTGCACATGGATTAG
CAACTTTGACTAGGAGCGATGGAGATCAACTGATGTTTGTGAATGTACCAGTTAGTCTCAGACCACTGATGATCTCGGAG
TTTACCCCCAATTGTATTGGTCACTCTTG--AGTAGTTTTTTCTACTCTAGATCTCAAAAAAA-----------------
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>chr7B_1407
TCATAGCAGCA---------------------------------------------------------------------
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----------------------------------------------------------------------AAATTGCAGA
AGCCTAAGACATGCTATGAGAGATGTCTGCAACTTACCTGCAGAAAACAGATTTTAGCATACAGGTGAAGATTGGTTGCA
AGTTCTTCTAGACACGGAAAATGAGGACACACGAGCCAAAATCCTGCTACTTCTC-------------------------
-----------------------GAATCAGTCAGTATGTCAACTCATTTTCTGACAAAGTACGCCGAGGAGCTACAGAAT
GCAACTGAACCAGAGGTTTGGACAGTGGGAAGGGGTACTGGAGATAATCTTGCACGACCAA--------CTGATAACATG
ATCAGGAAATGGTCTCCGCCTGCTGGAGGATCTGTCAAGATCAACTCCGATGCTGCCTTTTTAGCTGATAATGGAGAGAG
CTCTGCTGGTGCTGTTGCAAGAGACAACAGAGGACATGTTTTAGTAGCCGTCTGCAAGAAACTTCCGTTTTGTCATAGCA
TGGAGGAGGCTGAGGCCCGGGCTGTCCTAGTTGGCCTTCAAACCCTGTCAGTCTTCTTTAATGGACAGGTGATCGTTGAG
ACAGATAACCTGACCGTGGCAAAGGAATTGGCTATTCTAACCCCCTCATGTTCGCCACTCTATGGCCTTCTAAGGGACAT
TCAGACTGCTGCTGCGGCGTTTGACACATGCAGTTTCAGCTGTTTGAGGAGAGACAGCAATAAGCTTGCACATGGACTAG
CAGCTTTGACCAGGAGCGATGGAGATCAAGTGGTGATTGCGAATGTCCCGGACAGCCTGAGACCACTGATGATTTCGGAA
TATACACCCGACTGTACTGGTCACTCTGAGTAGTTTC--TTTCTACTCTAGATCTCAAAAAAAC----------------
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>chr4A_2275
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------------------------------------------------------------AAACATGGCCTAATATTTTA
TAAAATTGATTTGGTCCAATTTTGAAACAAATATATAGTAGGTTCTTCACAAAAAAACTCATTTTGGGCATTCAAAATAT
TTCTCCGACATGTCATATGTGGTCTAGTGTGATTTCAAAATATTTCTTAACTATTTATATTGAACTTTTTTATTTATTCA
TAACTCAATTTGTCATTGAATTCATGTTGCTTTCTATTGAAACATTTTTTAGGTGTACCAACACTTTCATTATAAATATG
CACATTTATATTAAGACTCAGTTTTTCATATAGTTACTACATTTCTCATTATAAATAGATTTTCTAGTGCC---------
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------------------------AAAGTGGAACATATTTTTTTTGTAAATAATTGTCTATAA-----------------
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------ACTTTTGTTTTGGACCCTTGAAAATATTTGGTTACAATTGGTTTTACCAAAAATCTG----AACAAATAATATC
ATATTACTCAGACTATATACAG-CC-ATAATGTATTATAGTGAGTTCGCATACATTTTT-CATAGTATGCTTAAACATCT
AAATAAACTATTAAAGTGCTTTGGAGCATATGTATCTAGCAAATAACTTGATAGAATATTTTAGACTATGTT--TCTAGC
ATATAACTTGGTGGAGGATCCAGGAGTACAAGTCTATCAAGTGTATGTGTAACTAA-TACATGATTCTAGAGTGTATGAA
GTGTCAACTAGTAATATGTACTCGAAACCCCATTTTT--GCTCTTTTGTTCAGGTTGCTTGTTTCA----AATTTGACCC
TCGGAGCTAAAATCGCGCAGTTGATAGCATCCATGTGTATTTTGAACTTGAACTTTCATATGTTTTAATGTTAGTCATTT
G---------ATTATTATTATTATTTGACATTGATTCTCCTTAGAGAAAACTGGTGTCATGTGCCTCAACATGTAACCCC
ATTTCAAAAATACCATCAACTTTGATTCTCTCGAACT-------------------------------------------
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>chr7D_2275
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------------------------------------------------------------AAACATGGCCTAATATTTTA
TAAAATTGATTTGGTCCAATTTTGCAACAAATATATGGTAGGTCCTTCACAAAAAAACTTATTTTGGGCATTCAAAATAT
TTCCCCGACATGTCATATGTGGTCTAGTGTGATTTCAAAATATTTCTTAACTATTTATATTGAACTTTTTTATTTATTCA
TAACTCAATTTGTCATTGAATTCAT--------------------TTTTTAGGTGTACCAACACTTTCATTATAAATATG
CACATTTATATTAAGACTCAGTTTTTCATATAGTTACTACATTTCTCATTAT-AATAGATTTTCTAGTGCC---------
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------------------------AAAGTGGAACATATTTTTTT-GTAAATAATTGTCTATAA-----------------
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------ACTTTTGTTTTGGATCCTTGAAAATATTTTGTTATAATTGGTTTTACCAAAAATCTG----AATAAATAATATC
ATATTACTCAGACTATATACAG-CCCATAATGTATTATAGTGAGTTCGCATACATTTTT-CATAGTATGCTTAAACATCT
AAATAAACTATTAAAGTGCTTTGGAGCATATGTATCTAGCAAATAACTTGGTAGAATATTTTAGACTATGTT--TCTAGC
ATATAACTTGGTGGAGGATCCAGGAGTACAAGTCTATCAAGTGTATGTGTAACTAAATAGATAATTCTAGAGTGTATGAT
GTGTCAACTAGTAATATGTACTCGAAACCCCATTTTT--GCTC-TTTGTTCAGGTTGCTTGTTTCA----AATTTGACCC
TCGGAGCTAAAATCGCGCAGTTGATAGCATCCATGTGTATTTTGAACTTGAACTTTCATATGTTTTAATGTTAGTCATTT
G---------ATTATTA---TTATTTGACATTGATTCTCCTTAGAGAAAACTGGTGTCATGTGCCTCAACATGTAACCCC
ATTTCAAAAAT---------------------------------------------------------------------
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>chr4A_3213
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-------------------------------------------TTGGTTTCATCAAAAATCTGAGCAAATAAATAAAATC
ATATTACTCAAACTATATACAC-CCAATAATGTTTTATAGTGAGTTCACACACATTTTTTCATAGTATGCTTAAACATCT
AAATAAACTATTAAAGTGCTTTGGAGCATATGTATCTACCAAATAACTTGGTAGAATATTTTAGACAGTGTGTATCTAGC
AAATAACTTGTTGGAGGTTCCTGGAGTACAAGACTATC--GTGTATGTGTAACTAAATAGATAAGTCTAGAGTGTATGAA
GTGTGAACTAGTAATATGTACTAGAAACCCCATTTCCGCGCTCTCTTGTTATGGATGCTTGTTTCA----AATTTGACCC
TCGAGGCTAAAATCACGCAGTTGGTAGCATCCATGTGTATTTTGA------ACTTTCCAATGTTTTAGTGTTGGTCATTT
CATTATTATTATTATTA---TTATTTGACACTGATTCTCCTTAGAGAAAACTAGTGTCGTCTGCCTCAACATGTAACCCC
ATTTCAAAAACACCATCAACTTTGCTTCTCTCCAACTTGCGCAAAACCAACGTAATCCACATGAAATCAACTCAGTCCGG
TAAGTTTTTAATCCTCATGCTAATATCAAAAATCATTCGCTGTTCCAAAAAGAATGGTTAACACAA--------------
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>SNPs
---------------S-----S--S--------------S-----S--S-----S---------S---------------
---S-S-------SS-------------------------------------S--------S-----S--S--S----S-
-----------------S-----------------------S-----S--S-------------------SS-SS--S--
---SS----S-----SS-S-----S---S-S--S--SSSSSSSSSSSS------S-----S-----SS-----SSSSSS-
-----SS----S--S-----S--------S---------S-------S--S--S-----S---S----S--------S--
-S-------------------SS-S-----S--------S--------------------S-S------S----------
---SSS-------------S-S---S------------S--S-S--S--SS----S--S-----------S---------
--S--------------S-----S-S--SS------SSS-----S-SS-S-------------------------S----
--SS----------S--------SS-----S-----S-----------------S-----S--S--S-------SS----
----S----------S------SS-S-SSS-------S---S---SS------------S-S--S---S-SS------S-
S-----S----S--------S---S-------S-S------------SS----S--S-----------------S----S
------------------------S--S------SS---------S-----------------------S--S-SS----
-SSSS-----------S-SS------------------SS---S--S--------S-----S-----S-----S--SS--
-S---S---S-S--S---------S----S--------S-----S-S--S--SS---SSS-----SS----S--S--S-S
--SS---------S----S----SS-----S-----S-------------SS--S-----------------------SS
----S--S-----S--S-----S-----S--S--S-----------------------------S-----S---S-----
-----S--S------------------------S--------S--S--S--S---S-S-----------SSSSS------
-S-S-----------S-S----S--S--S-----SS-S-----S--S-------S-------S-------------S--S
--------------------------------S-------S------S--------------------------------
---------S-----------------S----------------------------------SS-S--------------
-----S-S----S-S------S---------------------S--S---------------------------------
------S-----S----------------------------------------S--------------------------
------------S------------S----S---S-------------S---------------------SS--------
------------S-----------------------S-----S-----------------------S------------S
S-SS----------S-------------------------------S----S----------------------------
--------------------------------S-S-------------S----S--------------------------
----------S-------S-------------------------------------S-----------------------
----------------------------------------S---------------------------------------
------------S--------S-----------------S---------------S------------S-----------
-----------------------------------------------------------------S--------------
S-------------------------------------------------------------------------------
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--------------------------------SS-SS------SS------S----SSS--SSSSSSSS-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS--------SS----SS-SSSSSSS----S-SSSSS-S--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------S----------------------------------------S--------------------------
------------------S---S---------------------------------------------------------
--------------------------------------S-------S---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSSS--------S-
---------------S-------------------------------------------------S--------------
------------------------------S-------------------------------------------------
---------------------------S---------SS-S----------S-------S--------------S-----
--------S--S--S--S---S----------S-----SSS----------S--------SSSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_965
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-----------------------------------------------------------------TGACAGCGACGTTCA
TTCGA---------------------------------------------------------------------------
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>reverse_1877
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGTTTTCGTAGCCGTCTGCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_1175
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CATACAAGTTGGCTGCAGCG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_2956
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACACC
CGGTAGTAGGATGCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_1338
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ATACGCTCGCCACAAAGGAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_2957
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CACC
CGGTAGTAGGATGCAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CTGCTACTTCTCTGGCGCTG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_3679
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
TCGGAGCTAAAATCGTGCA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
