>input_sequence_35634
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-----------------------------ATGGATCATACTCAACCCAGGGATGGGCATGGCAATGAACCTGTGCCTTTA
GGTAGCTATACTTAACCTGTGCTCTGTTCTGCTGTTTATCTTAGTTCTATGATAAAATAGTAATACTCTTGTTTCAATCT
CAGGTCAGATGCTTTTTGAGCATTCGGGTAGTGATGCACCCCTTAGACTTGGTCCTCCAGGCTTTGGGAGTATGGCAAGT
AGATCAAATGACGTTCCATCTTCAAGTCATGCTACACAGTTTCCAGGTCATAGAGTTGTGAACCTAGGGACCTCACATGT
TTCATTAGTTCCCTATCGCACTGCAAGATCCAGCGGCCATGTACCATATGATGCTCAGCCGAAACCTGCCCTAAGTTCCC
ATGTGGACAACAGAATGGTTGCAATGAAGCGAAAGAACCTCCTTCCTTCAGTGGAGGGAATGGACGCTGTTGACTATTAT
GTTGGCAGCTCTTCCAACAGTCACTTCTCTGATCTTGTGCAGCCAAATCCTAGTGCACTTACTGAGCCCTTGCATCCGCA
AGTGCCTTTAAGCGTTGGTCCAAGCAACTGGATTGACCAACGCTTAGTTAATCAAGAAGGATCTCAGAGGAATGTCAGAG
CACGTCATGATAGTGCTAATGTTTCGTTGGAACCTAGGCCAGCTTCAACTTACACACCAAGTAACAATCATCAGCTGCCA
TTCCATTCAGCCACAAGTGCTTTCGTAAGTACGGCAGCAGAAAGGAACCAAGCACCTTTTTCTGTGCCAACAAGAACATT
ACCTTCAGGTTAGTAACTAATTCTTTGCTTAATGTACTTGATGCGTCTTTATTGTCTTGCTAATGCACTCCCCCAAGTTT
TTCCCTTGACAATTAGCATCTCATGCGGTCTTCTGTTCACATCTTTAATTATGGTATGAGGTTGCTTTTGTGACTTGATT
TTAGTAGTTACCTGCGGCTGATTTTCAGTCCTGTGATACAATTTTACCAGAAAAATGCGA--ATTATCAGTGCCCCAAAT
CATCTTGTATATGATATAGCATACGAGGTTGTTGTTTTTATGCTATTTATAAATTTCT-----TTCAAACTTACGGTCTA
TGTATTTTGACTG--TTTAGGTGGCACTGGGATCACTGGTAGGATCTACCATCATCCTATGCCTATGCATAGCAGCAGCT
CAAGTGTTGCTGCTGCCCCAACTGTCCATGGTTCTTCAAACAGTGCGATGTTTGCCAATGCTGGCTTTCCTGCTCCTAGA
GCTGTTCATGGCTCAGGTGCTGCTGCTGCCCCAACTGTCCATGGATCTTCAGACAGTGCGGTATTTGCTAATGGTGGCTT
TACTGCTCCTAGAGCTGTTCATGGTGGCGCCGTTCCTAGCTACGGCCATCCATCCTCCACAGTTTCCTCTGGCTCAAGAG
CATTTTCCCATGATGCAGTCATTCCGAACTATCCTGCTTCTACCTCTACATCCATTAGG---ATCAATGTGCCATCTCCT
ATCAGTACTGCGGCATCTTCTAGGCATGCAAGGGTATCCATGGCACATGCCAGCACTGGAATGAATAGATTCGTAGATAG
GAGCTCATTCCATTTGATCGCTGAGACACAGGTAGAGGTCTTGTTTCGTGTTTTCAGGTAATTAAGCTGGTATCCATTTA
AGTTTGAATATTTTTATTGATCTAGCTGCTGTTTGTGTAGCGGGTTATGATGGAGCAGTTGGCTTTCTATCAACAATCAA
GACAAGCAGCTGCTGACCCCCACAGGGACTTGAGACTGAACATTGATGAAATGAGTTATGAGGTATAATCATGGTCGTTT
GCTTCTTCTACTCTGGAAACTTCAGGATCTTTTCTT-AACCTTTTCCGTCTTGTATGTACAGGAACTGTTGGCCTTGGAG
GAATCCATAGGTACTGTGAACACCGGCCTTGCCGACGAAAAGATTTCAGGTTGTGTGAAAGAAGTGGTCTGTTGCAGTTC
TGATGAGGAGCAAGACGAGGAAGATGATGGGCGCTGTCTAGTCTGCCTGGTACGAATTTCTTATGCTCCTAATTTCCAGT
TCCATGTTGAAAAATTCATTACAGGCATGCCCTGAATCGTTTGCTCCTCCAATTCTGAT-TATGATTTTTG-------AA
CTATGGCAGGAGGAGTACAAAGACAATGATCTCCTAGGGATACTGAAGTGCAGGCACGACTTCCACACCGACTGCATCAA
GAAGTGGTTGCAAGTGAAGAACGCATGCCCGGTATGCAAATCCGCCGCGGCTTAG-------------------------
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>chr3A_1_TraesCS3A01G103000
AGATTTATCCTGATTTCTTTGATTGATT----CCCAGTAGTTGCCGTTTCTCGCCAATTATAGTACGAGTAGTAGTATCT
TGCTTGTATGCGAGGCGCCGTGTAGCAGGGGGAGC----------GACCATTTTGGTCCGCTTTGGGTACCGCATCGAGC
GAATTTGAAATTTTACTCGCGCACCTGTTCGCGGATAGGCATGCCGTAGTTTTTATTTATCACCTGCCATATCCGGGTCC
AGGTTCAGAACTCTAGAATCGCTGTTTGTTGTACAATCCCTGGCACCAAT------TCTTGGTCGTCGATTGATCCGTCG
ATATGCTCTCGTTGGCGTGGGACGGGATGCTTGTTTGTACTGTTTATTATTACTTGTGGCCTAGGTGACTCTTAATTTGA
TGATAGAACAGAGTCAGTCGTGTGCATGCTAGGTTGCTCCTCCTTCTGACAAAGGAAACAAAACGGATTGCACTCTGATG
GGTTTGCTTAATGACCCTTGCTGCCCTGCTCTCAGCAACCAGTTTGGTC-------------------------------
AAATAACATGTTTTCCCTGTGCATCTGTTGACTGATAACCTTGCCCTGTTTCTATCAGCTGCTATAT-------------
---TCTTGAACAAGAATTTGTTGTTAGAAGCCAGTATACTCCATTTAGAAGGGCAATGTTCACC-CCTTTTGTCGTAATT
CTTCACATTTGCAAAGTATCTCACCTTCAAGTGCTAATTACCTAATAATATAGCACAAAGTCCATTTCTTTCGCTAAAGT
AATGGGTGGATTTACTAATCAATCTACCTTCCTAGCTTTGTAGGAGTATATGAA-GTCAGTTTCATGTTTGTATACCTGA
GTTGCGGCGGTAGCTCAGTCCATAATCCGTGTTCAACTTAATGCTAGCACATTGTTTTCAGTTAGACTAGCATTTTTTGT
CCGATTCTAGACTATTGATGTTCATTCAATTTGTGTTTCCAGGTTAAGGGCAACCAGACAGGGCTGTTTCTTGGCTGGAC
ATCATCTGAACCATCTCCAAGTGCCAGAGATGGATCATACTCAACCCAGGGATGGGCATGGCAATGAACCTGTGCCTTTA
GGTAGCTATACTTAACCTGTGCTCTGTTCTGCTGTTTATCTTAGTTCTATGATAAAATAGTAATACTCTTGTTTCAATCT
CAGGTCAGATGCTTTTTGAGCATTCGGGTAGTGATGCACCCCTTAGACTTGGTCCTCCAGGCTTTGGGAGTATGGCAAGT
AGATCAAATGACGTTCCATCTTCAAGTCATGCTACACAGTTTCCAGGTCATAGAGTTGTGAACCTAGGGACCTCACATGT
TTCATTAGTTCCCTATCGCACTGCAAGATCCAGCGGCCATGTACCATATGATGCTCAGCCGAAACCTGCCCTAAGTTCCC
ATGTGGACAACAGAATGGTTGCAATGAAGCGAAAGAACCTCCTTCCTTCAGTGGAGGGAATGGACGCTGTTGACTATTAT
GTTGGCAGCTCTTCCAACAGTCACTTCTCTGATCTTGTGCAGCCAAATCCTAGTGCACTTACTGAGCCCTTGCATCCGCA
AGTGCCTTTAAGCGTTGGTCCAAGCAACTGGATTGACCAACGCTTAGTTAATCAAGAAGGATCTCAGAGGAATGTCAGAG
CACGTCATGATAGTGCTAATGTTTCGTTGGAACCTAGGCCAGCTTCAACTTACACACCAAGTAACAATCATCAGCTGCCA
TTCCATTCAGCCACAAGTGCTTTCGTAAGTACGGCAGCAGAAAGGAACCAAGCACCTTTTTCTGTGCCAACAAGAACATT
ACCTTCAGGTTAGTAACTAATTCTTTGCTTAATGTACTTGATGCGTCTTTATTGTCTTGCTAATGCACTCCCCCAAGTTT
TTCCCTTGACAATTAGCATCTCATGCGGTCTTCTGTTCACATCTTTAATTATGGTATGAGGTTGCTTTTGTGACTTGATT
TTAGTAGTTACCTGCGGCTGATTTTCAGTCCTGTGATACAATTTTACCAGAAAAATGCGA--ATTATCAGTGCCCCAAAT
CATCTTGTATATGATATAGCATACGAGGTTGTTGTTTTTATGCTATTTATAAATTTCT-----TTCAAACTTACGGTCTA
TGTATTTTGACTG--TTTAGGTGGCACTGGGATCACTGGTAGGATCTACCATCATCCTATGCCTATGCATAGCAGCAGCT
CAAGTGTTGCTGCTGCCCCAACTGTCCATGGTTCTTCAAACAGTGCGATGTTTGCCAATGCTGGCTTTCCTGCTCCTAGA
GCTGTTCATGGCTCAGGTGCTGCTGCTGCCCCAACTGTCCATGGATCTTCAGACAGTGCGGTATTTGCTAATGGTGGCTT
TACTGCTCCTAGAGCTGTTCATGGTGGCGCCGTTCCTAGCTACGGCCATCCATCCTCCACAGTTTCCTCTGGCTCAAGAG
CATTTTCCCATGATGCAGTCATTCCGAACTATCCTGCTTCTACCTCTACATCCATTAGG---ATCAATGTGCCATCTCCT
ATCAGTACTGCGGCATCTTCTAGGCATGCAAGGGTATCCATGGCACATGCCAGCACTGGAATGAATAGATTCGTAGATAG
GAGCTCATTCCATTTGATCGCTGAGACACAGGTAGAGGTCTTGTTTCGTGTTTTCAGGTAATTAAGCTGGTATCCATTTA
AGTTTGAATATTTTTATTGATCTAGCTGCTGTTTGTGTAGCGGGTTATGATGGAGCAGTTGGCTTTCTATCAACAATCAA
GACAAGCAGCTGCTGACCCCCACAGGGACTTGAGACTGAACATTGATGAAATGAGTTATGAGGTATAATCATGGTCGTTT
GCTTCTTCTACTCTGGAAACTTCAGGATCTTTTCTT-AACCTTTTCCGTCTTGTATGTACAGGAACTGTTGGCCTTGGAG
GAATCCATAGGTACTGTGAACACCGGCCTTGCCGACGAAAAGATTTCAGGTTGTGTGAAAGAAGTGGTCTGTTGCAGTTC
TGATGAGGAGCAAGACGAGGAAGATGATGGGCGCTGTCTAGTCTGCCTGGTACGAATTTCTTATGCTCCTAATTTCCAGT
TCCATGTTGAAAAATTCATTACAGGCATGCCCTGAATCGTTTGCTCCTCCAATTCTGAT-TATGATTTTTG-------AA
CTATGGCAGGAGGAGTACAAAGACAATGATCTCCTAGGGATACTGAAGTGCAGGCACGACTTCCACACCGACTGCATCAA
GAAGTGGTTGCAAGTGAAGAACGCATGCCCGGTATGCAAATCCGCCGCGGCTTAGGGCTGGAGAGGAAGCAGAATAACCG
ATGTTCCTCTCCATTGATTCTAGATTGAGATTGAGTTATGC-GGTCCCCGGTCCATTCTTTGGTGCCTGA--GCCATGGA
AATAAGTGCGCTAGGACGACTTGTTTCGTGGGT-TGCTGTAGCTGTGTTATCATGTCTTGCTGTAAAAACTTTCATTCAA
CAAGCAATTGGTAGAGATATTCTCCAGCCATTTATTTATCTGTGTATCACATGTTGAGCCGTTGTGAGGTGTGATGGCGA
ATCATCCCCTTGTACATTGGTGCCTGTTAACTTATATGGTTTTGATACTCAGCTGTCAGGTTGTTGGCATGAGACCAATA
ATGTGGCTTGACGTCGTTGGGTATGCGCATGTCGTCGTTGGCTCGTT--------GGCTGTGACAGTTTGACTACTTGCT
CTGGTAATTCCCTTCTGTGAAACTAGTAAAACAAAAGGTTAGTACTCCCTGTGTAAACTAATATAAGATCTTTTAGATCA
TTATAA--AAATATCTTATTAGTTTCTAGACTAATATAAGATCTTTTAGA---TATTAGTCCTCTGAAAACTAATAGAAG
AT-----------CTAAAAAGATCTTATAGTAGTGATCTAAAAGATCTTATATATTTATTAGTTTTCTTGAACTATA---
---TACTTCCTCCGTTCCTAAATATAAGTCTTTGTAGAAATTTCACTATGCACTACATACGGAGCAAAATGAGTGAATCT
ACACTCTAAAATGTATCTACATACATCCGTATGTGGTTCATAGTGGAATCTCTCCAAAGACTTATATTTAGGAACAGAGG
GAGTATTTGTTAGTACTAGTTTACAGAGGGAGTACTTGCCACCCCCCAAGATCCAAGATGGGCTTCACAAAATTGCAACC
AGTTCGTAAACTTTGATTACCAAGTCATTTTCTCATTTTTATTGATTGTCTTTTTTATTTTTCTACTTACGTGTGGGTAA
CCGGTTATGTACCGGCTTCGACCGAGCCACCTGCAGCTCTGCCGTCGCC
>chr3B_1
AGATTTATCCTGATTTTTTTGATTGATT----CCCACTAGTTGCTGTTTCTCTCCAATTATAGTACGAGTAGTA---TCT
TGCTTGTGTGTTAGGCGCCGTGTAGCAGGAGGAGCCGCTCTCGGCGACCATTTTAGT-CGCGTTGGGTACCGCATCCAAC
GAATTTGAAATTTTACTCGCGCACCTGTTCGCGGATAGGCATGCCGTAGTTTTTATTTATCACCTGCTGTATCTGGGGCC
AGGTTCAAAACTCTGGAATCGGTGTTTGTTGTAGAATCCCTGGCACCAATAAGCATTCTTGGCCGTGGATTGATCTGTCG
GTATGCTCTTGTTGGCGTGGGACGGGATGCTTGTTTGTACTGTTTAGTTCTC----GCCTAGATAAGA---TTAATTTGA
TGATAGAGCAGAGTCAGTCATGCGCATGCTAGGCTGCTCC-CCGTCTGACAAAGGAAACATAT-GGATTGCACTCTGATG
GGTTTGCTTAATGACCCTTGCTGCCCTGCTCTCAGCAATCAGTTTGGTCGCTTTTGGTTAATTGATCAAAGAAAACTTAC
AAATAACATGTTTTACCCGTGCATCTATTGACTGATAACCTTGCCCTGTTTCTATCAGCTGCTATTTCTAGGGGAACTTA
AATTCTAGAACAAGAATTTGTTGTTAGAAGCTAATATACTCCATTTAGAAGGGCAATGTTCCCCTCCTTTTGTCGT----
--------------AATATCTCACCTTCAAGTGCTAATTACCTAATAATATAGCACAAAGTCCATTTCTTTCACTAAAGT
AATGGGTGGATTTACTAATCAATCTACCTTCCTAGCTTTGTATGAGTATATGAAAGTCAGTTTCATGTTTGGATACCTGA
GATGCGGCGGTAGCTCAGTCCATAATCCGTGTTCAACTTCATGCTAGCACATTGTTTTCAGTGAGACTAGCATTGC-TGT
CTGATTCTAGACTATTGATGTTCAATCAATTTGTGGTTCCAGGTTAAGGGCAACCAGACAGGGCTGTTTCTTGG-TAGAC
ATCATCTGAACCATCTCCAAGCGCCAGAGATGGATCATACTCAACCCAGGGATGGGCATGGCAATGAACCTGTGCCTTTA
GGTAGCT---CTTCACCTGTGCTCTGTTCTGCTGTTTATCTTAGTTG--TGATAAAATAGTAACACTCTTGTTTCAATCT
CAGGTCAGATGCTTTTTGAGCATTCGGGTAGTGATGCACCCCTTAGAATTGGTCCTCCAGGCTTTGGGAGTATGGCAAGT
AGATCAAATGATGTTCCATCTTCAAGTCATGCTACACAGTTTCCAGGTCATAGAGTTGTGAACCTAGGGACCTCACATGT
TTCATTTGTTCCCTATTGCACTGCAAGATCCAGCGGCCATGTACCATATGATGCTCAGCCGAAACCTGCCCTAAGTTCCC
ATGTGGACAACAGAATGGTTGCAATGAAGCGAAAGAACCTCCTTCCTTCAGTGGAGGGAATGGACGCTGTTGACTATTAT
GTTGGCAGCTCCTCCAACAGTCACTTCTCTGATTTTGTGCAGCCAAATCCTAGTGCACTTACCGAGCCTTTGCATCCGCG
AATGCCTTTAAACATTGGTCGAAGCAACTGGATTGACCAACACTTAGTTAATCAAGAAGTATCTCAGAGGAATGTCAGAG
CACGCCATGATAGTGCTAATATTTCATTGGAAGCTAGGCCAGCTTCAACTTACACACCAAGTAGCAATCATCAGCTGCCA
TTCCATTCAACCACAAGTGCTTTTGCAAGTACGTCAGCAGGAAGGAACCAAGCACCTTTTTCTGTGCCAACAAGAACATT
ACCTTCAGGTTAGTAACTAATTCTTTGCTTAATGTGCTTGATGCGTCTTTATTGTCTTGCTAATGC--------------
-----------------ATCTCATGTGGTCTTTCGTTCACATCTTTAATTATGGTATGAGGTTGCTTTTGTGACTTTATT
TTACTAGTTACCTGCTGCTGCCTTTCAGTCCTGTGATACAATTTTACCAGAAAAAAATGTGGATTATTAGTGGCCCTAAT
CATCTTGTATATGATATAGCGTATGAGGTTGTTGTTTTTATACTATTTACAAATTTCTCGTCTTTCAAACTCACAGTCTA
TGTATTTCGACTGTGTTTAGGTGGCACTGGGATCACTGGTAGGATCTACCATCAT------CCTATGCATAGCAGCAGCT
CAAGTGTTGCTGCTGCCCCAACTGTCCATGGTTCTTCAGACAGTGCGATGTTTGCCAATGCTGGCTTTCCTGCTCCTAGA
GCTGTTCATGGCTCAAGTGCTGCTGCTGCCCCAACTGTCCATGGATCTTCAGACAGTGCGGTATTTGCTAATGGTGGCTT
TACTGCTCCTAGAGCTGTTCATGGTGGCGCCATTCCTAGCTACGGCCATCCATCCTCCACAGTTTCCTCTGGCTCAAGAG
CAATTTCCCATGATGCAGTCATTCCGAGCTATCCAGCTGCTACCTCTACATCCGTGAGGATCATCAATCTGCCATCTCCT
ATCAGTACTGCTGCACCTTCTAGGCATGCAAGGGTATCCATGGCGCATGCCAACAGTGGAAGGAATAGATTCGTAGATAG
GAGCTCATTCCATTTGATCGCTGAGACACAGGTAGAGGTCTTTTTTCCTGTTTTCAGGTAATTTAGCTGGTATTCATGTA
AGTTTGAATACTTTTATTGATCTAGCTGCTGTTTGTGTAGCGGGTTATGATGGAGCAGTTGGCTTTCTATCAACAATCAA
GACAAGCAGCTGCTGACCCCCACAGGGACTTGAGACTGAACATTGATGAGATGAGTTACGAGGTATAGAGATGGTCGTTT
GCTTCTTCTACTCAGGAAACTTCAGGAACTTTTCTT-AACCTTTTCCGTCTTGTATGTACAGGAACTGTTGGCCTTGGAG
GAGTCCATAGGTACTGTGAACACCGGCCTTGCCGACGAAAAGATTTCAGCTTGTGTGAAAGAAGTGGTCTGTTGCAGTTC
CGATGAGGCACAAGACGACGAAGATGATGGGCGCTGTCTAGTCTGCCTGGTATGAATTTCTTGTGCTCCTAATTTCCAGT
TCCACGTTGAACAATTCGTTACAGCCATGCCCTGAATCATTTGCTCGTCCAATTCCGAT-TATGATTTTTG-------AA
CTATGGCAGGAGGAGTACAAAAACAATGATCTCCTGGGAATTCTGAAGTGCAGGCACGACTTCCACACTGACTGCATCAA
GAAGTGGTTGCAGGTGAAGAACGCATGCCCGGTGTGCAAATCCGCCGCGGCTTAGGGCAGGAGAGGAAGCAGAATAACCG
ATTTTCCTCTCCATTGATTCTAGATTGAGATTGAGTTATGCCGGTCGCCGGTCCATTCTTTGGTGCCTGA--GCCATGGA
AATAAGTGCGCTAGGACGACTTGTTTCGTGGGT-TGCTGTAGCTGTGTT---ATGTCTTGCTGTAAAAACTTTCATTCAA
CAAGCAATTGGTAGAGATATTCTCCAGCCATTTATTTTTATTTCTATCACATGTTGAGCCGTTGTGAGGTGTGATGGCGA
ATCATCCCCTTGTACATTGGTGCCTGTTAACTTATATGGTTTTGATACTCAGCTGTCAGGTTGTTGGCGTGAGACCGATA
ATGTGGTTTGACGTTGGTGGGTATGCGCATGTCGTCGCTGCCTCGTTGCCCACAGGGCTGTGACAG--TGACTACTTGCT
CTGGTAATTCCCTTCTGTGAAACTAGTAAAACAAAAGGTCAGTACTCTCTC--TAAACTAATATAAGATCTTTTAGATCA
CTATAG--AAA-ATCTTATTAGTTTTCACACTAATATAAGATCTTTTAGATATTATTAGTCCTCTGAAAACTAATATAAG
ATCTTTTAGCTCACTAAAAAGATCTTATAGTAGTGATCTAAAAGATCTTTTACATTTATTAGTTTTTTTGAACTATA---
---TATTTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TAGTTTACAGAGGGAGTACTTGCCACCCCCCAAGATCCAAGATGGGCTTCACAAAATTGCAGCC
AGTTCATAAACTGTGATTACCAAGTCGCTTTCTCATTTTTATTGATTGTCTTTTCATTTTTTCTATTTACGTGTGGGTAA
CTGGTTATGTACCGGTTTCGACCGAGCCACCTGCAGCTTTGCCGTCGCC
>chr3D_1
AGATTTATCCTGATTTCTTTGATTGATTGATCCCCACCAGTTGCCGTTTCTCTCCAATTATAGTACGAGTAGTA---TCT
TGCTTGTATGTTAGGCGCCGTGTAGCAAGGGGAGC----------GACCATTTTGGT-TGCTTTGGGTACCGCATCCAAC
GAATTTCAAATTTTACTCGCGCACCTGTTGGCGGATAGGCACGCCGTAGTTTTTATTTATCACCTGCTGTATCTGTGGCC
AGGTTCAAAACTCTGGAATCGCTGTTTGTTGTAGAATCCCTGGCACCGATAAGCATTCTTGGTCGTGGATTGATCTGTCC
ATACGCTCTCGTTGGCGTGGCACGGGATGCTTGTTTGTATTGTTTAGTCAGGTGTGGCTTAGATAAGA---TTAATTTGA
TGATAGAGCAGACTCGGTCCTGCGCATGCTAGGTTGCTCC-CTCTCTGACAGAGGAAACATATGAG-TTGCACTCTGATG
GGTTTGCTTAATGACCCTTGCTGCCCTGCTCTCAGCAACCAGATTGGTCCCTTT-GGTTAACTGATCAAACAAAACTTAC
GAATAACATGTTTTATCCGTGCATCTATTGACTGATAATCTTGCCCTGTTTCTATCCGCTGCTATATCTAGGGGAACCTA
AATTCTAGAACAAGAATTTATTGTTAGAAGCCAATATACTCCATTTAGAAGGGCAATGCCCCCCCCCC---GTCCTAATT
CCTCACATTTGCTAAATATCTGACCTTCAAGTGCTAATTACCTAATGATATAGCACAAAGTCCATTTCTTTTGCTAAAGT
AATGGGTGGATTTACTAATCAATCTACCTTCCTAGCTTTATAGGAGTGTATG-AAGTCAGTTTCATGTTTGGATACCTGA
GTTGCGGCGGTAGCTCAGTCCATAATCTGTGTTCAACTTAATGCTGGCACATTGTTTTCAATGAGACTAGCATTGC-TGT
CTGATTCTAGACTATTGATGTTCATTCAATTTGTGGTTCCAGGTTAAGGGCAACCAGACAGGGCTGTTTCTTGGCTAGAC
ATCATCTGAACCATCTCCAAGTGCCAAAGATGGATCATACTCAACCCAGGGATGGGCATGGCAATGAACCTGTGCCTTTA
GGTTGCTATACTTCACCTGTGCTCTGTTCTGCTGTTTATCTTAGTTATATGATAATTTAGTAACACTCTTGTTTCAATCT
CAGGTCAGATGCTTTTTGAGCATTCGGGTAGTGATGCGCCCCTTAGACTTGGTCCTCCAGGCTTTGGGAGTATGGCAAGT
AGATCGAATGACGTTCCATCTTCAAGTCATGCTACACAGTTTCCAGGTCATAGAGTTTTGAACGTAGGGACCTCACATGT
TTCCTTTGTTCCCTATCGCACTGCAATATCCAGCAGCCATGTACCATATGATGCTCAGCCGAAACCTGCCCTAAGTTCCC
ATGTGGACAACAGAATGGTTGCAATGAAGCGAAAGAGCCTCCTTCCTTCAGTGGAGGGAATGGACGCTGTTGACTATTAT
GTCGGCAGCTCCTCCAACAGTCACTTCTCTGATTTTGTGCAGCCAAATCCTAGTGCACTTACCGAGCCCTTGCATCCGCA
AATGCCTTTAAACATTGGTCCAAGCAACTGGATTGACCAACGCTTAGTTAATCAAGAAGGATCTCAGAGGAATGTCAGAG
CGCGCCATGATAGTGCTAATATTTCATTGGAACCTAGGCCAGCTTCAACTTACACACCAAGTAACAATCATCAGCTGCCG
TTCCATTCAACCACAAGTGCTTTTGCAAGTACGTCAGCAGGAAGGAACCAAGCACCTTTTCCTGTGCCAACAAGAACATT
ACCTTCAGGTTAGTAACTAATTCTTTGCTTAATGTGCTTGATGCGTCTTTATTGTATTGCTAATGC--------------
-----------------ATCTCATGTGGTCTTCTGTTCACATCTTTAATTATGGTATGAGGTTGCTTTTGTGACTTTATT
TTAGTAGTTACCTGCTGCCGCCTTTCAGTCCTGTGATACAATTTTACCAGAAAAATTTGTGGATTATTAGTGGACCTAAT
CATCTTGTATATGATATAGCGTATGAGGTTGTTGTTTTTATAGTATTTACAAATTTCTCGTCTTTCAAACTCACAGTCTA
TGTATTTCGACTGTGTTTAGGTGGCACTGGGATCACTGATAGGATCTACCATCAT------CCTATGCATAGCAGCAGCT
CAAGTGTTGCTGCTGCCCCAACTGTCCATGGTTCTTCAGACAGTGCGATGTTTGCCAATGCTGGCTTTCCTGCTCCTAGA
GCTGTTCATGGCTCAAGTGCTGCTGCTGCCCCAACTGTCCATGGATCTTCAGACAGTGCGGTATTTGCTAATGGTGGCTT
TACTGCTCCTAGAGCTGTTCATGGTGGCGCCGTTCCTAGCTACGGCCATCCATCCTACACAGTTTCCTCTGGCTCAAGAG
CAATTTCGCATGATGCAGTCATTCCGAGCTATCCAGCTGCTACCTCTACATCCATGAGGATCATCAATCTGCCATCTCCT
ATCAGTAACGCTGCATCTTCTAGGCATGCAAGGGTATCCATGGTGCATGCCAACAGTGGAAGGAATAGATTTGTAGATAG
GAGCTCATTCCATTTGATTGCTGAGACACAGGTAGAGGTCTTGCTTTCTGTTTTCAGGTGTTTTAGCTGGTATCCATGGG
AGTTTGAATATTTTTATTGATCTAGCTGCTGTTTGTGTAGCGGGTTATGATGGAGCAGTTGGCTTTCTATCAACAATCAA
GACAAGCAGCTGCTGACCCCCACAGGGACTTGAGACTGAACATTGATGAGATGAGTTACGAGGTATAGAGACGGTC-TTT
GCTTCTTCTACTCAGGAAACTGCAGGATCTTTTCTTTAACCTTTTCCATCTTGTATGTACAGGAACTGTTGGCCTTGGAG
GAATCCATAGGTACTGTGAACACCGGCCTTGCCGACGAAAAGATTTCAGGTTGTGTGAAAGAAGTGGTCTGTTGCAGTTC
GGATGAGGCACAAGACGACGAAGATGATGGGCGCTGTCTAGTCTGCCTGGTACGAATTTCTTATGCTCCTAGTTTCCAGT
TCCATGTTGAACAATTCATTACAGCCATTCCTTGAATCGTTTGCTCTTCCAGTTCTGATGTATGATTTTTGAACTATTAA
CTATGGCAGGAGGAGTACAAAGACAATGAACTCCTGGGAATTCTGAAGTGCAGGCACGACTTCCACACTGACTGCATCAA
GAAGTGGTTGCAGGTGAAGAACGCATGCCCGGTGTGCAAATCCGCCGCGGCTTAGGGTAGGAGAGGAAGCAGAATAACCG
ATGTTCCTCTCCATTGATTCTAGATTGAGATTGAGTTATGCCGGTCGCCCGTCCATTCTTTGGTGCCTGAGAGCCATGGA
AATAAGTGCGCTAGGACGACTTGTTTCGTGGGTTTGCTGTAGTTGTGTTATCATGTCTTGCTGTAAAAACTTTCATTCAA
CAAGCAATTGGTAGAGATATTCTCCAGCCATTTATT--------TATCACATGTTGAGCCGTTGTGAGGTGTGATGGCGA
ATCATCCCCTTGTACATTGGTGCCTGTTAACTTATATGGTTTTGATACTCAGCTGTCAGGTTGTTGGCATGAGACCGATA
ATGCGGTTTGACGTTGGTGGGTATGCGCATGTCGTCGCTGGCTGGTTGCCCACAGGGCTGTGACAGTTTGACTACTTGCT
CTGGTAATTCCCTTGTGTGAAACTAGTAAAACAAAAGGTTAGTACTCCCTGTGTAAACTAATATAAGATCTTTTAGATCA
TTAATAAAAAA-ATCTTATTAGTTTAAAGACTAATATAAGATCTTTTAGA---TATTAGTCCTCTGGAAGCTAATATAAG
ATCTTTTAGCTCACTAAAAAGATCTTATAGTAGTGATATAAAAGATCTTATATATTCATTAGTTTTTAAACTATATTTAT
TACTACTCCCTCCGTTTCATATTAATTGTCGCTCGAACGGATGTATCTA-------------------------------
--ACACTGAAATACGTGTAGATACATCCATTT----------------------CAGCGACAACTAATATGGAACGGAGG
GAG-------------TAGTTTACAGAGGGAGTACTTGCCACCCCAAGATCTAT-------GCTTCACAAAATTGCACCC
AGTTCATAAACTTCGATTACCAAGTCATTTTCTCAATTTTATTGATTGTCTTTTTC-TTTTTCTATTTACGTGTGGGTAT
CTGGTTATGTACCGGCTTCGACCGAGCCACCTGC---------------
>SNPs
------------------------------------S---------------S---------------------SSS---
----------SS---------------------------------------------S------------------S-S-
-------------------------------------------------------------------SS----S---S--
-------S------S------------------S--------------------------------S--------S----
----------------------------------------------S-SS-SSS--SSSSSS-SSS--SSS---------
-------S-----------S--S-----------------S--S----------------S-SS----------------
--------------------------------------------------------------------------------
--------------S--S--------S-----------------------------------------------------
------S--------------------------S---------------------------S------------------
-S----------S--S----------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------S-----------SSS---
-S---------------------------------S----------------------------------------S---
--------------------------------------------------------------------------------
-------------S--------------------------------S----------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S---------------------S----------------------------S-----------------
-S---------S-S------------------------------------------------------------------
----S---------------S----S------------------------------------------------------
---------S-------------S-S-------S------S---------------------------------------
-----------------------------------S------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS--------S--------------------------------------------------S---
---------------S----SS----------------------------------SS-S-------S----S---S---
--------------------S--S-----------------S-------S---------------------S--S-----
-------S-----------------------------------------------SSSSSS-------------------
--------------------------------------S-----------------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--S------------------------S------S---S----------------S------------S-----------
-----------S--------------------------------S-------S--S-----S------------------
-----------------------------------------------S---------------S-------------S--
--------------------------------------------------------------------------------
-------------------------------------------------S--------S--------SSS----------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------SS--------S-------------------------------------------------------------
-----------S------------S---------------------S---------------------------------
-----------------------------------S--S--S--------------------------S-----------
------------S--------------------S------------------------S---------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------------S-S-S-S------------------------------------
----------------------------------------------------------------------------S---
------S-------S-S--------------------S------------------------------------------
--------------------------------------------------------------------------------
-----------S-------------SS-------------------------------------------------S---
------------------------------------------------------------------S-------------
----------------S-SS-S--SSS---SS-SS-SSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS--S--S----SSS-S--S--------S-S-SSSSSSSSSSSSSSSSSSSSSS--SS---SSS--S-SS-----S----
---SSSSSSSSSSSSS-------------------------------------------------------------S--
-----S-------------------------------------------------SS--------S--------------
-S------------------------------------S----------
>forward_238
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----------------------------------------------------------ATCACCTGCCATATCCGGGT--
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>reverse_1706
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-------------------------GTTGGAACCTAGGCCAGCTT-----------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>forward_1037
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACAGGGCTGTTTCTTGGCTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_2279
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AACAGTGCGATGTTTGCCAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>forward_1918
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GCTAATGCACTCCCCCAAGT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_3236
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGGGATACTGAAGTGCAGGC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>forward_2077
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGCGAATTATCAGTGCCCCA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>reverse_3687
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CTTGACGTCGTTGGGTATGC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
