>input_sequence_35558
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---------ATGACGGAGCGGCAGGACGAGGCGTGGTGCTCGTGCTCGCCGAGGCAGTGCAGGATTTGCCACGAGGAGGA
AGGGGACGACGGCTGCGCAACCGC------------AACCGCCATGGAGTCTCCCTGCGGATGCTCTGGCTCCCTCAAGG
TATATGTCGTGTATACATGGATTGCTATCATTCTGGCTGTTGTTCTGCCCAATTCCTTGGGTGTT-CCCTTCTCCCGATC
GGTGCCGTTTCTTGATGGTT-GATCTG----CGTGTTCATGTCGTGTTCTC-----CAGTATGCTCACAGGGGGTGCGTG
CAGAGATGGTGCGACGAGAAGGGGAGCACCGTCTGCGAGATTTGCCTCCAGGTAACTCGGCCTTCTCTGGTTCCGTTGCA
TCTCCTTGAAAAAATCTCACTGGAATCCTCGCGTGTCCAGTTATTTCGC----TTGATCATCATTTCCTACCGTCCGTTT
ATCCATGGGAATTTCC-TTTTTTGAAAAACTTCTATTCTAATCTT---------------------TGCCTGATCATCAT
TTCCTACTGTTTTATCCATGAGAATTTCCATTTTTTACTTAAAAAA--------TATATAGCAAAAAAAA----------
------------GAGGACTAGGCTATGGGAGGATGAACCAACTCTGTTCGCCCTTTTCCACGATTTCCGGAATTGAGACC
CGTGTGAGTGAGTGCTTCACAGCTTGGGTAGGACTCCTGTAAAGAGTAGATGT--TTTTAGCATACCGAGTACTGTACAA
TCTTTTCATAGATAGAACTCTCCGCT-GCTTGTTTCCTTGCTTTTGTTTAACATGTTTTTTTGCTGTCCAGAATTACGAG
CCTGGATACACCGTTGCTCCCAAGAAAACTCAAGTTGCTCATGTCGCAGTCACCATCAGGTGCCGCCCCTCCCCACTCAT
TT----TCTCCCTCTC-----CTCTCTTGGTAACTGGGACCGGTGCTGGTACGCGCAAAGAGGCTATAGAACGTAGTGAA
TGCTGAATAGTAAAACCTTACTCCTAATTCATGTCTAGTGAGTGACATGCAACTGTCATCAACCATTTGGAATGCCCAAT
AAAACATTCGGATCCTGACCTGGTTGCCGGGGTTCACAATAGCGAGGCACGACCAGTATACAAAAATT------------
--------------------------------------------------------------------------------
----------------------CAAACCATTCAGGTAAATAAACAAGAATACCAATCAAACAGCAGCTGTCCGTCTCACT
CTACGCGGCATGGCATCTTGTTTCTTTAGGACGGGGGGAAAGCAAAGAACAAATGATCATTGACAGAGCCGCCGACCGGT
ACGTGGATTCGGTCCAGCTGTTTCGCCAGCCAAGTTGTACAGTACCAAATACCAACCGCCTTGTCCTGATTATTCTCCCC
ATGAGATGGCAGATAAGATGCCCTCCGTTTCACATCTGTACAACCGTGTCCTGCACTCCTGCAGCACCATGCCATTGCAG
CCTTGCAAAACTGCAAACGAGTCAACCCGTCTCTTGGTTCGCACTACTGCAGAGA-----TAGGTACCATCTGTTCAACA
ATGCAATGAGAATACGAGATGGCATGAATGGTCCAGAGGGTCAAATGTTGAATCCTGTCATCGCCAT----CACACGTTA
ACCTGTTGTTCGTGGTGCAGAGGGAGCCTGGAGGTCCCAAGGCAGGATTATGAGGCACCGGAGGATGCCGTGTTGATCGG
GCTCGACGCGGCGGTGGGTGACCCGGCCTACGCCGAGTGCGCGAGCGCCGCCGGCAGAAGTGCTGCCTGGTGCCGGTCGG
TGACGGTGACGGTACACCCCTGACCGAGACTTTGAACCACATTGCCATGTTCAGAACTTCAGATGCGAATGGCGTTGAAC
TCTGACCGAATTCTGCTTGTCCATGCAGTTCACTGTTGTGTTGCTGCTGAGGCATCTCATCGCCCTGGTGACCGTCGGCG
CCGCGAATCAGTACGCCTTCAGCCTGCTGACGGTGAGTTCTATCCATGATTTTTCCCTCGGATAAATAAACAAAT-AAAG
GTGATCCATGATTGTTTGACATGTGTTCCTTTTCTTTGAAGATATACTTGCTGAGGGCGAGTGGGATCTTGCTGCCGTTC
TACGTCCTCATGCGGCTCATCTCCGCGGTGCAGCACGGCCAGATGCAGTACCGGCTGCAGATGCTCCAGGTGCGTTGCGT
CGTCCGAGTTTTAGGCGCTGGTTGCAGGGGAGGTTCCAGTGAGCAAGTTTTTGACACCTGTTTCTTGCTGCAGGATCAAA
GAAGGAACGCATCAAGAATGCAACACGGGGTGCCCGGTCAGAGACAACAGCAGCATGTGATTCTTGTTGTGTGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr1A_1_TraesCS1A01G206100
AGGTCACCAACTCCGCGTCAGTCGTGCCCCGACGCCACGACGACCAAGCCGGCATGTCTGCGGCCGCCGCTGACATCAAG
GAAAAGTAGAACATGGATGGTCGCCGCCGGTTGGGTCCCATGAAGGCCAACGCTGCCGCCTCACCGGGTTGCACAGCCGG
TGACTTGCC-------CGGGGCATAGGCCACGGCGTCCGTCTTTTCCGTTCCA-AAAACCAATTTTAATTTGTGCTTCGC
GGTAGCAGAGGGTGGCTACTCTTCCCCTCCCGCTAAAGCATGTCCCTACGGGGTTTAGGGCAGTCCGATGAGCGGGCTGC
CGGACAAAGGGAAGACATGTCATGGAAATGAAGACCCGCCGCGGCCAACTATAGGCTAGTTTAGCCTAGTCTGGTATAGT
TTAGTTAAATA------------TAAAGGTTTTCATCTGGTTTGTATGAAAATTATCCAGTTCGCATGTAATTTGTTTGA
TCAGATTCAAATTCTGTTTTAAATGTACCTGGATAACTTTGAATGACCGGCTTTTTCTTTAGTATTTGTGGACGAATGCG
GTGTCTGATCTATGGGTCGGTCTTGGAGATGCTCTG---AATACC---AACGAGTGTAGTACCAACGGGT---GTACGAC
ACACAACACATGTATGGCAGGAAGTATGGCAACAATCCGGTCGTACA----AAGCACGCCGAGGCCCAGATCGAC-----
----------CAGGAGCTAGCTAATTGAAG-CCTGCCCGTTGCGGCGGCCCGGAACCAACTAGCAACTGCCGTGGCCGTT
CCCAGAGCGTTCGGGGCCACCACCTGTCGCGCATTTGGATTTCCGTGGCCCCTTTCGGTTTCTCCTCCTCGCCTCGTCGT
ACCTATTTAATGCCACCTATGTTCCAGAAAAACCTTATTCAATGCCATCCCCATTCAGGGAAAGGGGAGAGAATCAGAGG
AGCAGCAGCCAATAGCCGCCCGCGGAGATAGCCAGAGCCGGAGCCAGAGAGGAAGGCTGGAATTCGAGAGATCGGAGGGA
GGGAGGAGGATGACGGAGCGGCAGGACGAGGCGTGGTGCTCGTGCTCGCCGAGGCAGTGCAGGATTTGCCACGAGGAGGA
AGGGGACGACGGCTGCGCAACCGC------------AACCGCCATGGAGTCTCCCTGCGGATGCTCTGGCTCCCTCAAGG
TATATGTCGTGTATACATGGATTGCTATCATTCTGGCTGTTGTTCTGCCCAATTCCTTGGGTGTT-CCCTTCTCCCGATC
GGTGCCGTTTCTTGATGGTT-GATCTG----CGTGTTCATGTCGTGTTCTC-----CAGTATGCTCACAGGGGGTGCGTG
CAGAGATGGTGCGACGAGAAGGGGAGCACCGTCTGCGAGATTTGCCTCCAGGTAACTCGGCCTTCTCTGGTTCCGTTGCA
TCTCCTTGAAAAAATCTCACTGGAATCCTCGCGTGTCCAGTTATTTCGC----TTGATCATCATTTCCTACCGTCCGTTT
ATCCATGGGAATTTCC-TTTTTTGAAAAACTTCTATTCTAATCTT---------------------TGCCTGATCATCAT
TTCCTACTGTTTTATCCATGAGAATTTCCATTTTTTACTTAAAAAA--------TATATAGCAAAAAAAA----------
------------GAGGACTAGGCTATGGGAGGATGAACCAACTCTGTTCGCCCTTTTCCACGATTTCCGGAATTGAGACC
CGTGTGAGTGAGTGCTTCACAGCTTGGGTAGGACTCCTGTAAAGAGTAGATGT--TTTTAGCATACCGAGTACTGTACAA
TCTTTTCATAGATAGAACTCTCCGCT-GCTTGTTTCCTTGCTTTTGTTTAACATGTTTTTTTGCTGTCCAGAATTACGAG
CCTGGATACACCGTTGCTCCCAAGAAAACTCAAGTTGCTCATGTCGCAGTCACCATCAGGTGCCGCCCCTCCCCACTCAT
TT----TCTCCCTCTC-----CTCTCTTGGTAACTGGGACCGGTGCTGGTACGCGCAAAGAGGCTATAGAACGTAGTGAA
TGCTGAATAGTAAAACCTTACTCCTAATTCATGTCTAGTGAGTGACATGCAACTGTCATCAACCATTTGGAATGCCCAAT
AAAACATTCGGATCCTGACCTGGTTGCCGGGGTTCACAATAGCGAGGCACGACCAGTATACAAAAATT------------
--------------------------------------------------------------------------------
----------------------CAAACCATTCAGGTAAATAAACAAGAATACCAATCAAACAGCAGCTGTCCGTCTCACT
CTACGCGGCATGGCATCTTGTTTCTTTAGGACGGGGGGAAAGCAAAGAACAAATGATCATTGACAGAGCCGCCGACCGGT
ACGTGGATTCGGTCCAGCTGTTTCGCCAGCCAAGTTGTACAGTACCAAATACCAACCGCCTTGTCCTGATTATTCTCCCC
ATGAGATGGCAGATAAGATGCCCTCCGTTTCACATCTGTACAACCGTGTCCTGCACTCCTGCAGCACCATGCCATTGCAG
CCTTGCAAAACTGCAAACGAGTCAACCCGTCTCTTGGTTCGCACTACTGCAGAGA-----TAGGTACCATCTGTTCAACA
ATGCAATGAGAATACGAGATGGCATGAATGGTCCAGAGGGTCAAATGTTGAATCCTGTCATCGCCAT----CACACGTTA
ACCTGTTGTTCGTGGTGCAGAGGGAGCCTGGAGGTCCCAAGGCAGGATTATGAGGCACCGGAGGATGCCGTGTTGATCGG
GCTCGACGCGGCGGTGGGTGACCCGGCCTACGCCGAGTGCGCGAGCGCCGCCGGCAGAAGTGCTGCCTGGTGCCGGTCGG
TGACGGTGACGGTACACCCCTGACCGAGACTTTGAACCACATTGCCATGTTCAGAACTTCAGATGCGAATGGCGTTGAAC
TCTGACCGAATTCTGCTTGTCCATGCAGTTCACTGTTGTGTTGCTGCTGAGGCATCTCATCGCCCTGGTGACCGTCGGCG
CCGCGAATCAGTACGCCTTCAGCCTGCTGACGGTGAGTTCTATCCATGATTTTTCCCTCGGATAAATAAACAAAT-AAAG
GTGATCCATGATTGTTTGACATGTGTTCCTTTTCTTTGAAGATATACTTGCTGAGGGCGAGTGGGATCTTGCTGCCGTTC
TACGTCCTCATGCGGCTCATCTCCGCGGTGCAGCACGGCCAGATGCAGTACCGGCTGCAGATGCTCCAGGTGCGTTGCGT
CGTCCGAGTTTTAGGCGCTGGTTGCAGGGGAGGTTCCAGTGAGCAAGTTTTTGACACCTGTTTCTTGCTGCAGGATCAAA
GAAGGAACGCATCAAGAATGCAACACGGGGTGCCCGGTCAGAGACAACAGCAGCATGTGATTCTTGTTGTGTGAGG----
------AGTGGATGTTGTCCGCTAGAATAGTCTTAAATGTATTATTATTGATGTTGATCAGGGAGCAATTAGGAAAAAAG
AAAGAGAAAGAAAA-ATTGTTCATAAGCTTTCCGGTGTGTATGTGCACATATATTTCATT-CAGTGATGAATG-AATCAA
CAACTCCAAATCCAGCTTTTCTTTTATCAAGACAGTGCAACCCTCAGCTCTTGATAATCTCAAAATATACAGGCTGCGAA
GATGGACTTTCTCGGGGTCTATATAAAGCTTACACCAGCAGACAAGTACTTCCTCCATCCGGAGTTAGTCATCCGGAATA
ATTTGACACTCAAACTGATTTGTTTAGCAAAGTACTTTCTCCATTCCAAATTACTCGTTACAGAAATGGATATATTTAAA
ATTAAAATATATATAAATACATTGACAAGTAATTCGAAATGAAGGAAGTAGTTATGAACTTTAACTTCCCGCTTTATTCA
TATGATGTCATATGGTACCGTGAATATGATCAAAGAGCATTCATGGTAAGAGCATTTACAGTCGGACGCCTAAAATCATA
AGAAGAAAAAAAATCTCAAACACCTAGCTGACTGGCATCTATCTTATCCAACACAAAATTCGGAACGGATATGGGGAAGA
GCATCTACAGCCGGACGCCTCAAACTATAAAAAGAAAAAACAAATCGGTCTCAAACGCCTAGCTTACCGGCATCTATCAT
ACCCAACACAAATTTGGGGCGGCCAGGCGCGTCCGTCTCGTCGGACTTATGTTAGGATCCCGCACAAAATCACTCTGAAA
CCCAACGGTCTGACAGTCGTCTCCTTTGGGAGGTGTGAACGTCGCGTGGCCCGCTCCGGTCAAAGTCTGGTTATTTAAGC
TGGACAGTGACCCCCCTCCCCTTCCCAGCCCTAGCCACATCCACTTCCCTCCCTCTTCGCGCCACCAGCCCGAGCCACAT
CCACTCCCTCCCCGCCTCCCCCTCTTGGCTCGCCGTCCGCAACAACC
>chr1D_3
--GTCGCCAACTCCGCGCCGGCCGTGCCCCGGTGCCACGACGACCAAGCCGGCATGTCCGCGGCCGCCGCCGATATCGAG
GAAAAGTAGAACATGGATGGCCGCCTCCGGGTGGGTCCCACAAAGGCCACCGCCGCCGCCTCATCGGGTTGCACAGCGCG
TGACTTGCC-------CGGGGCGTAGGCCACGGCGTCCGTCTTCTCCGC-CCC-AAAACCAAATTTAATTTGTGCTTCGG
GGTAGCGGAGGGTGGCTACTCTTCCCCTCCCGCTGAAGCATATCCCTCAGGGTCTCAGGGTAGTCTGATGAGCGGGCTGC
CGGACAAAGGGAAGACATGTCATGGAAATGAAGATCCGCCACGGCCGACTATAGACTACTTTAGCCTAGTCTGGTATAGT
TTCGTTAAATA------------TAAATGTTTTCGTCCGGTTTGTATGAAAATTATCAGTTTTGCATATAATTCATGAGG
TTAG-ATCAAATCCTGTTTGAAATGTATGTGGATAACTTTGAATGACTGGCTTCCGCTTTAGTATTCGTGGACGGATGCA
GTGTCTCGTCTGTGGGTCGGTCTTGGAGATGCTCTA---AATACCTAGTACGAGTGCAATACCAACGGGT---GTACGAC
CCACAACACATATATGGCAGGAAGTATGGCAACAATCCGGTCGTACGTACGCAGCACGCCGAGACCCAGATCGGC-----
----------CAGGAGGTTCCTAATTGAAGCCCTGCCCGTTGCGGCGGCCCGGAACCAACTAGCAACTGCCGTGGCCGTT
CCCAGAGCGTTCGGGGCCACCACCTGTCGCGCATTTGGATTTCCGTGGACCCTTTCGGTTCCTCCTCCTCGCCTCGTCGT
ACCTATTTAATGCCACCTTCGTTCCAAAAAAACCTTATTCAATGCCATCCCCATTCAGGG-AAGGGGAGAGAAGCAGAGG
AGCAGCAGCCAATAGCCGCCCACGGAGACAGCCAGAGCCAGAGCCAGAGAGGAAGGCTGGAATTCGAGAGATC----GGA
GGGAGGAGGATGATGGAGCGGCAGGGCGAGGCGTGGTGCTCGTGCTCGCCGAGGCAGTGCAGGATTTGCCACGAGGAGGA
AGGGGACGACGGCTGCGCAACCGC------------------CATGGAGTCTCCCTGCGGATGCTCTGGCTCCCTCAAGG
TATGCGTGCATGGATTTTCTTCTTCTTTC---TTGGCTGTCGTTCTGCCGGATTCCTTGTGCGTTCCCCTTCTCCCGATC
GGTGCCGTTTCTTGATGGTT-GATCTGCGTGCGTGTTCATGTCGTCTTCTGCGCTGCAGTATGCTCACAGGGGGTGCGTG
CAGAGATGGTGCGACGAGAAGGGGAGCACCGTCTGCGAGATTTGCCTCCAGGTAACCCGGCCTTCTCTCCTTCCGTTGCA
TCTCCTTGAAAAAATCTCACTGGAATCCTCGCGTGTCCGGTTATTTTACTTGATTGATCATCATTTCCTGCCGT---TTT
ATACATGGGAATTTCC-TTTCTTGAAAAACTTATATTCCAATCTTCACGTGCCCTTGTATTCATTCTGCCTGATCATCAT
TTCCTACTGTTTTATCCATGAGTATT-CCCCTTTTTACTT---AAA--------TATATAGCAAAAAAAAAAGACGGCAT
CCCAAAAAAAGAGAGGACTAGGCTATGGGATGATAAACCAACTCTGTTCGCCCTTTTCCACGATTTCCGGAATTGAGACC
CGTGTGAGTGAGTGCTTCACAGCTTGGGTAGGACTCCTGTAGTAC-TAGATGT--TTTTAGCATACCGAGTAC-----AA
TCTTTTCATAGATAGAGCTCTCCGCT-GCTTGTTTCCTTGCTTTTGTTTAACATGTTTTTTGCTGT--CAGAATTACGAG
CCTGGATACACCGTTGCTCCCAAGAAAACTCAAGTTGCTCATGTCGCAGTCACCATCAGGTGCCGCCCCTCCCCACTCA-
---------CCCTCTCCCTCTCTCTCTTGGTAACTGGGACCGGTGCTGGTACGCGCAAAGAGGCTATAGAACGTAGCGAA
TGCTGAATAGTAAAATCTTACTCCTAATTCATGTCT----AGTGACATGCAACTGTCGTCAACCATTTAGAATGCCCAAC
AAAACATTCGGATAAATAAACAAGAATCCCCACTCACCCTCTCCCTCTCTCTCTTGGTAACTGGGACCGGTGCTGGTACG
CGCAAAGAGGCTATAGAACGTAGCTAATGCTGAATAGTAAAATCTTACTCCTAATTCATGTCTAGTGACATGCAACTGTC
GTCAACCATTTAGAATGCCCAACAAAACATTCGGATAAATAAACAAGAATCCCAGTCAAACAGCAGCTGTCCGTCTCACT
CTACGCGGCATGGCATCTTGTTTCTTTAGGACGGGGGAAAAGCAAAGAACAAATGATCATTGACAGAACCGCCGACTGGT
ACGTGGATTCGGCCCAGCTGTTTCGCCAGCCAAGTTGTACAGTACCAAGTACCAACCACCTTGTCCTGATTATTCTCCCC
ATGAGATTGCAGATAATATGCCCTCCATTTCACATCTGTACAGCCGTGTCCTGCACTCCTGCAGCACCATGCCGTTGCAG
CCTTGCAAACCTGCAAACGAGTCAACCCGTCTCTTGGTTCGTACTACTGCAGAGA-----TA-GTACCATCTGTTCAACA
ATGCAATGAGAATACGAGATGGCATGAATGGTCCACAGGGTCAAATGTTGAATCCTGTCATCACCAT----CACACGTTA
ACCTGTTGTTCGTCGTGCAGAGGGAGCCTGGAGGTCCCAAGGCAGGATTATGAGGCACCGGAGGATGCCCCGTTGATCGG
GCTCGACGCGGCGGCGGGCGACCCGGCCTACGCCGAGTGCGCGAGCGCCGCCGGCAGAAGTGCTGCATGGTGCCGGTCGG
TGACGGTGACGGTACATCCCTGACCAAGACTTTGAACCACATTGCCATGTTCAGAACTTCAGATGCGAATGGTGTTGAAC
TCTGACCGAATTCTGCTTGTCCGTGCAGTTCACTGTTGTGTTGCTGCTGAGGCATCTCATCGCCCTGGTGACCGTCGGCG
CCGCGAATCAATACGCTTTCAGCCTGCTGACGGTGAGTTCTATCCATGATTCTTCCCTCGGATAATAAATAAACACAAAG
GTGATCCATGATTGTTTGACATGTGTTCCTTTGCTTTGAAGATATACTTGCTGAGGGCGAGTGGGATCTTGCTGCCGTTC
TACGTCCTCATGCGGCTCATCTCCGCGGTGCAGCACGGTCAGATGCAGTACCGGCTGCAGATGCTCCAGGTCTGTTG---
----TGAGTTTTAGACGCTGGTTGCAGGGGAGGTTCCAGTGAGCAAGTTCTTAACACCTGTTTCTTGCTGCAGGAGCAAA
GAAGGAACGCATCAAGAATGCA---CAGGGTGCCCGGTCAGGGACGACAGCAGCATGTGATTCTTGTTGTCTGAGGAAAA
CAGTGAAGTGGATGTTGTCCTCTAGAATAGTCTTAAATGTATTATTATTGATGTTGATCAGGGAGCAATTAGGAAAAAAG
AAAAGAGAAAGGAACATTGTTCATAAGCTTTCCGGTGTGTATGTGCACATATATTTC-TT-CAGTGATGAATG-AATCAA
CAACTCCAAATCCAGCTTTTCTTTTACTAAGACT--GCAGCCCTCAGCTCTTGATAT-------------AGGCTGCTAA
GATGGATCTTCTCGGGGTCCAAATAAAGCTTA------CAAACAACTACTTCCTCCATCCGGAACCAGTCATCCGGAATT
ATTTGACGTTCAAACTGATTTATTTAGTAAGTACTCTCTC----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr1B_34
---------------------------------GCCACGACGACCAAGCCGGCACGTCCGTGCCCGTCGCCAACATCGAG
GAAAAGTAGAACATAGAAGGATGCCATAGCTTAGGTCCCACGAAGGCCAGCGCCACCGCATCGCTGGGTTGCACAAACGA
TGACTTTCCTGCTTCGCGGGGCATAGGCCACGGCGACCGTCTTCTCCGC-CCCTAAAACCAACCTTGATCCGTGCTTCGC
GGC-----AGGGAGGCTACTCTTCCCCTCCCGCTGAAGCATATCCCTCCAGGGATCACAACGGTCCAATGAGCCGGCTGC
TGAACAAAGGGAAGACATGTCATGGTAATGAAGATCCGCCGTGGCCGGCTATA-GCTAGTTTATCCTATTCCGGTATAGT
TTAGTTAAAATATATCTGAAATGTAAATGTTTCCATCCGGTTTGTGTGAAAACCATCCGTTT-GCATGTAATTCGGTCAG
TTAG-TTCAAATCCCGTTTTAGATGCATGTGT---------------TGGCTCCCGCATTAGTGTTCGCGGACAGATACA
TTATTTAGGTTCCGGGTCGATGTTGAGGATGGTCTAATAAATACC---TACGTGTGTAATACCAGCGAGTGTAGTACGGC
ACAGAATACATGTATGGCAGGAAGTATGGCAACAATCCGGTCGTACA----CAGCACGCCGAGACCCAGATCGGGCGGCC
CCCAGGCGCGCAGGAGCTAGCTAATTGAAGCCATGCCCGTTGCGGCGGCCCGGAACCAACTAGCAACTGCCGTGGCCGTT
CCCAGAGCGTTCGGGGCCACCACCTGTCGCGCATTTGGATTTCCGTGGCCCCTTTCGGTTTCTCCTCCTCGCCTCGTCGT
ACCTATTTAATGCCACCTTCGTTCCAAAAAAACCTTATTCAATACCATCTCCCAGTCAAGTAAGGGGAGAGAAGCAGAGG
AGCAGCAGCCAATAGCCGCCCACGGAGAT------AGCCAGAGCCAGAGAGCAAGGCTGGAATTCGAGAGATC----GGA
GGGAGGAGGATGATGGAGCGGCAGGACGAGGCGTGGTGCTCGTGCTCGCCGAGGCAGTGCAGGATTTGCCACGAGGAGGA
AAGGGACGACGGCTGCGTAACCGCAACCGCAACCGCAACCGCCATGGAGTCTCCCTGCGGATGCTCTGGCTCCCTCAAGG
TATATGTCGTGTATACATGGATTGTTATCATTTTGGCTGTTGTTCTGCCCAATTCCTTGGGTGTTT-CCTTCTCCCGATC
GGTGCCGTTTCTTGATGGTTTGATCTG----CGTGTTCATGTCGTGTTCTG-----CAGTATGCTCACAGGGGGTGCGTG
CAGAGATGGTGCGACGAGAAGGGGAGCACCGTCTGCGAGATTTGCCTCCAGGTAACTCGGCCTTCTCTCCTTCCGTTGCA
TCTCCTTGAAAAAATCTCGCTGGAATCCTCGCGTGTCCAGTTATTTCGC----TTGATCATCATTTCCTACCGT---TTT
ATCCATGGGAATTTCCCTTTTTTGAAAAACTTCTATTCCAATCTTCGCGTGTCCCTGTATTCATTCTACCTGATCATCAT
TTTCTACTGTTTTATCCATGAGAATTTCCCCTTTTTACTT---AAAAAATACAGTATATAGCAAAAAAAAAAAAAAT---
-------------AGGACTAGGCTATGGGATGATGAACCAACTCTGTTCGCCCTTTTCCACGATTTCCGGAATTGAGACC
CGTGTGAGTGAGTGCTTCACAGCTCGGGTAGGACTCCAGTAAAGAGTACTAGATGTTTTAGCATACCGAGCAGTACAA--
--TTTTCATAGATAGAGCTCTCTGAAAGCTTGTATCCTTGCTTTTGTTTAACATGTTTTTTGCTGT--CAGAATTACGAG
CCTGGATACACCGCTGCTCCCAAGAAAACTCAAGTTGCTCATGTCGCAGTCACCATCAGGTGCCGCCCCTCCCCACTCAC
TCTCCCTCTCCCTCTCTCTCTCTCTCTTGGTAACTGGGACCGGTGCTGGTACGCGCAAAGAGGCTATAGAACGTAGTGAA
CGCTGAATAGTAAAATCTTAGTCCTAATTCATGTCT----AGTGACATGCAACTGTCATCAACCATTTGGAATGCCCAAC
AGAACATTCGGATCCTGTCCTGGTTGCCGGGGTTTACAATAG----------CCAGTATACAAAAATC------------
--------------------------------------------------------------------------------
----------------------CAAATTATTCAGGTAACCAAACAAGAACCCCAGTTATACAGCAGCTGTCCGCCTCACT
CTACGCGGCATGGCATCTTGTTTCTTTAGGACGGGGGA-AAGCAAAGAACAAATCATCATTGACAGAGCCGCCGACTGGT
ACGTGGATTCGGTCTAGCTGTTTCGCCAGCCAAGTTGTAT-----CAAGTACCAACCACCTTGTCCTGATTATTCTCCCC
ATGAGATGGCAGATAATATGCCCTCCATTTCACATCTGTACAGCCGTGTCCTGCACTCCTGCAGCACCATGCCATTGCAG
CCTTGCAAAACTGCAAACGAGTCAGCCCGTCTCTTGGTTCGTACTACTGCAGAGATACTGTA-GTACCATCTGTTCAACA
ATGCAATGAGAATACGAGATGGCATGAATGGTCCAGAGGGTCAAATGTTGAATCCTGTCATCACCATCACACACACGTTA
ACCTGTTGTTCGTGGTGCAGAGGGAGCCTGGAGGTCCCAAGGCAGGATTATGAGGCACCGGAGCATGCCCCGTTGATCGG
GCTCGACGCGGCGGCGGGCGACCCGGCCTACGCTGAGTGCGCGAGTGCCGCCGGCAGAAGTGCTGCCTGGTGCCGGTCGG
TGACGGTGACGGTACATCCCTGACCGAGACTTTGAACCACATTGCTATGTTCAGAACTTCAGATGCGAATGGTGTTGAAC
TCTGACAGAATTCTGCTTGTCCGTGCAGTTCACTGTTGTGTTGCTGCTGAGGCATCTCATTGCCCTGGTGACCGTCGGCG
CCGCGAATCAATACGCCTTCAGCCTGCTGACGGTGAGTTCTATCCATGATTCTTCCCTCGGATAAATAAACAAAT-AAAG
GTGATCCATGATTGTTTGACATGTGTTCCTTTGCTTTGAAGATATGCTTGCTGAGGGCGAGTGGGATCTTGCTGCCGTTC
TACGTCCTCATGCGGCTTATCTCCGCGGTGCAGCACGGCCAGATGCAGTACCGGCTGCAGATGCTCCAGGTGTGTTGCGT
CGTCTGAGTTTTAGACGCTGGTTGCAGGGGAGGTTCCAGTGAGCAAGTTCTTAACACCTGTTTCTTGCTGCAGGAGCAAA
GAAGGAACGCATCAAGAATGCAACACAGGGTGCCTGGTCAGGGACAACGGCAGCATGTGATTCTTGTTGTGTGAGGAGAA
CAGTGAAGTGGATGTTGTCCTCTGGAATAGTCTTAAATGTATTATTATTGATGTTGATCAAGGAGCAATTAGGAAAAAAG
AAAAGAGAAAG--------TTCATAAGCTTTCCGGTGTGTATGTGCACATACATTTC-TTTCAGTGATGAATGAAATCAA
CAACCCCAAATCCAGCTTTTCTTTTACCAGGACTGTGCAACCCTCGGCTCTTGATAATCTCAAAATATACAAGCTGCGAA
GATGGACTTTCTCGGGGTCCAAATAAAGCTTACACCAGCAAACAAGTACTTCCTCCATCCGGAATTAGTCATCCAGAATT
ATTTGACACTCAAACTGATTTATTTAGCAAGTA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>SNPs
SS---S-----------S-S-S---------SS-------------------------S-----------S------S--
--------------------S----S--------------S--------S---S--------------------------
-------------------------------------------S----SS--S---------S-----------------
------S---------------------------S------S-----S-----S-S------------------------
----------------------------------S-----------S---------------------------------
---------------------------S---------S--------------------SS--S----------S---S-S
-S--S-------S--------------SS------------------S-----SSS----------S-------S----S
------SS---S-----------------------S------------S---------S---------------------
---------------------------------------------------S-----------S---------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------SS------S---------------------------------S------------S------
---------------------S-----------------S---------------------------------SSSS---
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------SS----------
--------------------------------------------------------------------------SSS---
--------------------------------------S-----------------------------------------
-----------------------------SS---------SSS-------------------------------------
------------------------------S-------------------------------------------------
--------------------------------------------------------------------------SS-S--
----------------S--------------------------------------------SSSSSSS------------
-------------------------------------------------------------------------------S
-S------------------------------------------------------------------------------
---------------S--------------------SSSS---------------------------------------S
-------------------------------------------SSSSSSSSS---------------S------------
--------------------------------------------------------------------------------
--------------------------S-----------------------S---S-------------------------
-------------------------------------S--------------------------------------S---
------------------------------------------------S--------S----------------------
----------------S---------S---------------S-------------------------------------
-----------------------------------------S--------------------S-----------------
--------------------------------------------------------------S-----------------
---------------------------------------------------------------------SS---------
--------------S---S-------------------------------------------------------------
----------------S-------------------------------------------------------S-------
----------------------S---------------------------------------------------------
----------S----------------------------------------S----------------------------
--------------------------------S-----------------------------------------------
------------------------------------------------------------------------S-------
----S---------S----------------------------------S--S----------------------S----
--------------------------S--------------S--------------------------------------
--------------------S-----------------------------------------------------------
---SSSS--SSS---------------------------------------------S----------------------
--------------------------S------S----------------------------------------------
-------------------S-S------------------S----------------------S---------------S
---------------------S--------SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_275
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CTACTCTTCCCCTCCCGCTA---------------------------------------------
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>reverse_2375
--------------------------------------------------------------------------------
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------------------------------------------------------ATCAAACAGCAGCTGTCCGT------
--------------------------------------------------------------------------------
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>forward_1430
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGTAACTCGGCCTTCTCTGG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_2529
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATACCAACCGCCTTGTCCTG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>forward_2212
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTCACAATAGCGAGGCACGA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_4170
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GCCGGACGCCTCAAACTATA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
