>input_sequence_35552
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------------------------------------------------------------------------------AT
GGTGGTTCTTGCCAAGGGCGAGCTCGAGCAGATAGCGCTGCCGGCGGCGCAGCCGCCGCTGGCCCACGTCCGGGCGATCG
ACCTGTCCGCCGCCCCGGGGCCCGGCCGCGCGGCCGCGGCGCGCGCGCTGGTGTCCGCGTGCGAGGAGCAGGGCTTCTTC
AAGGTGACCGGCCACGGGGTGCCGCCGGAGCTCGTGCGCGCCGCGGAGGCGGCCGCGGCGGAGTTCTTCGCGCTGCCGCA
GGCCGAGAAGGAGGCCGCCGCGGGCCGGCCGCTCGGGTACGGCAGCAAGCGGATCGGCGTCTCCGGCGACCTCGGGTGGA
TCGAGTACGTCATGCTGGGGGTCACCCCCGCCGGCGCGCTGCCCGCCGCCTCCTTCACGTCCTGGACATTGCCGTGCGCG
GG---CGCCGCCGTGGCGTCACTGTCCGAGCCCCCCTGCCCCTTGCGGTGAGTTCGTTCGCTCGCCACCCATGCACGCGT
-ACATTTTACATGCGCCCTCCGCGTCTGCACCGGCA-------CCCCCTCCCTCCGCTGACAAACACATGCACATGCACA
TGCA----------CACATGCCACGCCACGTTTTTCTTCCCGCCCTCTCATGATCTGCTCTGCTCAAAATGCGTGTTCGA
ACAGTCCAATCACTGTCA---GTTGGAGAGCATTACCTGAACTCCTAAAGTG---TACCAAAAGTGAATCTTAGCTAGCA
ACACCAGTCAATTTGCCAGGTCCCTAA---------------------------AACACGAAGCTGTGGGATTTTTTTTC
-GTTGAATAGTTTAGAG----------TTCCTGAAAAGCAAA--TTTGAAAATATAA---GGAGAATTTCCGTGGATAAG
GTCGGCCTTTCGTGGCCGCGTGGAGCTTCACTATTTATCGCGGCCGACGTACGGAGGCGGCGAATCTTTAACGTTTGACT
CACGTGCGGCGGCGACGTAACGGTCGGCCCGTTCCTTTCGATCACTCTCTACTTGCCGTGCTGCTCCGTTCGCACGTGTC
GGCGTCGCCGCGCATCCGTGTCGACGCGCCGCCCGTCCAGCT------------ACGTACGTACGCTGCCTTTCTGCCGC
------TCCGGTGACGTGCTGCCGTTTGCACTCCACACC------------------GCCGCGCCCCATCTCTATCCGCA
TCTCTTTTGACATCATTCATTAATCGGTGTCGCCGAGAAATGC---ATTGAGTGATATTTTGGTGGTCTTTTTTTTGT--
-TGTCAGGGATCTTCTGGAGGAGTACGCGGCGGCGGTGCGGCGGATGGCGTGCGGCGTGCTGGAGCTGATGGCGGAGGGG
CTGGGGGTCGCGCCGGCGGACGCGCTGTCGCGGCTGGTGTCGGACGCGGAGAGCGACAGCATGGTCCGGGTGAACCACTA
CCCGCCGCGGCCGGAGCTGCAGGGCCGCCTCCTGACGGGGTTCGGCGAGCACACGGACCCGCAGGTCATCTCCGTGCTCC
GCTCCAACGGCACGTCCGGGCTGGAGATCTGCGCGCGCGACGGCTCCTGGACCGCCGTGCCGCCCGACGCCGACTCCTTC
TTCGTCAACGTCGGCGACGCCCTGCAGGTACGTACACCCTACACGTCGCGCTGCTCCTGCTCTGCTACACCTACACCTAC
ACCTACACCTACACGGTAGGAGTAC--TTCTCTCAAGGACGTAA-------GTTCGGTGCATGCTACTCTAGATGCTGCT
ACTGCTGTTGCACGTCACTTTTACTGTGGGGGTGCAT----------GGATCTCCAGGCGAGCAAACGAGATCGAGTCAA
TAATGAT-----CAGTGCCCGGTCTCGAGCCTTCTCTCGAGTGTCCACATCAAACAAGG---GCAGCAGCAGTGCAGCAC
GAGGCTACATATATAGCAC------------------TGTATGTGCATGCATACGGCCAGCACGCAGTCGTGTACAGTAC
AGGGCCCGCCCCCTTGAGCCCTGCACGTGAAAACCCTGGCATGATGAATGCTGATAATGCGAGCATGCAT--ATGCATGC
ATGAATTAATAAGACACTAGTATTACTACTACGCAGAGACT-----------------------AGTTTCAGGTGCAACG
CATCGTATTAATTTGGTCCT----------------CGTGCATGCAGGTGTTGACGAACGGGAGGTTCAGGAGCGTGAGG
CACAGGGTGGTGGTGAGCAGCGAGAGGCCGAGGGTGTCCACGATCTTCTTCGGGGGCCCGCCGTTCGGCGAGAGGCTGGC
GCCGCTGCGCCAGCTGCTAGGGGACGGCGGCCGGAGCCGCTACAGGGAGTTCACCTGGAAGGAGTACAAGAGCAGCACCC
ACAAGGGCAGGCTCGCCACCGACCGCCTCTGCAGCTTCGAGAACTAG---------------------------------
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------------------------------------------------
>chr3B_1_TraesCS3B01G166100
AAGGCCCATCTAGAACGTGAGATTATTGTTCTTGGGTTCGCAAGCGATAAATATAGGCATACAGCACACGTTATCTGCGT
CTATCTCTTGCACCTGGCGAGGATTTTTTTAGCATGGACAGCTCAGCGGGGCTCCCCGTTCATGCAGTCCATTCCTATTT
TTGAAGAAGGAAATGAACCCGGACGGACATATTATCCTTGTGGTCCTCTGAGCAAGTGCTGCACAAGT----ATTTTCCT
ATTCTGCT-GGAGTGCATTGTACCACCACGCCACGGCA---AATCCACGGCATTATTGGTCCATGTATATACTATTATGC
TCAGTGTTTAAGACCCACAAGTATCTTGCCTGGCTATTCAAGAGCATTTTGCAGGTATTGGCAAAAAGACTCGTATACGT
CGTCCGCATGGTGGTAACTTGTAAGCAATATC------------------GTCAAAAGATGACCAAGATTGAAAGTGACC
CCGATCGGCCATCGCTCTGAAGGCTGAAGGCTCTGACCCAAGTAAGTTTTCTGGAAGTGTGACTATGATGGACTTTCAAG
ATTTTCTGTGTCGCCAGCAAGGAATTCTAAACCGAAAAACAAAACAATCGTAATATGTGAGCCATGTGTCATCACTGACG
TAGAAAACACACATTCCGCGTACGTACTGAAGTGCTCAGACGGCAGGGATTAAACCGGCACGGACACTAC--CGATCTAA
TGTAACGATGAGCGAAACGGCAACCCATGATGACACTAG----CGATCCGTGCCATTGGTGCTCGATCTGACGGCCCAGA
TCAACGCACTACAGCGTCACAGGTGCACAG----GCAGAGCGCGCGGAATATTCAGAGGCTGTACTTGTACCAACCCAAA
CTTCCGGCGGGCGGGCCGGTGCGCCTATAAATAGAGGGCAACGAGCTCGGCTCGTATCACTCGACTCGAAGAGCTCTCGC
GCTTGCTCGATCAAACCT--TCCTGCCCTGCTTTCTCCTCTGTTTCCTCGAGACCAAGGAAGAAGAAGCCGACCGACCAT
GGTGGTTCTTGCCAAGGGCGAGCTCGAGCAGATAGCGCTGCCGGCGGCGCAGCCGCCGCTGGCCCACGTCCGGGCGATCG
ACCTGTCCGCCGCCCCGGGGCCCGGCCGCGCGGCCGCGGCGCGCGCGCTGGTGTCCGCGTGCGAGGAGCAGGGCTTCTTC
AAGGTGACCGGCCACGGGGTGCCGCCGGAGCTCGTGCGCGCCGCGGAGGCGGCCGCGGCGGAGTTCTTCGCGCTGCCGCA
GGCCGAGAAGGAGGCCGCCGCGGGCCGGCCGCTCGGGTACGGCAGCAAGCGGATCGGCGTCTCCGGCGACCTCGGGTGGA
TCGAGTACGTCATGCTGGGGGTCACCCCCGCCGGCGCGCTGCCCGCCGCCTCCTTCACGTCCTGGACATTGCCGTGCGCG
GG---CGCCGCCGTGGCGTCACTGTCCGAGCCCCCCTGCCCCTTGCGGTGAGTTCGTTCGCTCGCCACCCATGCACGCGT
-ACATTTTACATGCGCCCTCCGCGTCTGCACCGGCA-------CCCCCTCCCTCCGCTGACAAACACATGCACATGCACA
TGCA----------CACATGCCACGCCACGTTTTTCTTCCCGCCCTCTCATGATCTGCTCTGCTCAAAATGCGTGTTCGA
ACAGTCCAATCACTGTCA---GTTGGAGAGCATTACCTGAACTCCTAAAGTG---TACCAAAAGTGAATCTTAGCTAGCA
ACACCAGTCAATTTGCCAGGTCCCTAA---------------------------AACACGAAGCTGTGGGATTTTTTTTC
-GTTGAATAGTTTAGAG----------TTCCTGAAAAGCAAA--TTTGAAAATATAA---GGAGAATTTCCGTGGATAAG
GTCGGCCTTTCGTGGCCGCGTGGAGCTTCACTATTTATCGCGGCCGACGTACGGAGGCGGCGAATCTTTAACGTTTGACT
CACGTGCGGCGGCGACGTAACGGTCGGCCCGTTCCTTTCGATCACTCTCTACTTGCCGTGCTGCTCCGTTCGCACGTGTC
GGCGTCGCCGCGCATCCGTGTCGACGCGCCGCCCGTCCAGCT------------ACGTACGTACGCTGCCTTTCTGCCGC
------TCCGGTGACGTGCTGCCGTTTGCACTCCACACC------------------GCCGCGCCCCATCTCTATCCGCA
TCTCTTTTGACATCATTCATTAATCGGTGTCGCCGAGAAATGC---ATTGAGTGATATTTTGGTGGTCTTTTTTTTGT--
-TGTCAGGGATCTTCTGGAGGAGTACGCGGCGGCGGTGCGGCGGATGGCGTGCGGCGTGCTGGAGCTGATGGCGGAGGGG
CTGGGGGTCGCGCCGGCGGACGCGCTGTCGCGGCTGGTGTCGGACGCGGAGAGCGACAGCATGGTCCGGGTGAACCACTA
CCCGCCGCGGCCGGAGCTGCAGGGCCGCCTCCTGACGGGGTTCGGCGAGCACACGGACCCGCAGGTCATCTCCGTGCTCC
GCTCCAACGGCACGTCCGGGCTGGAGATCTGCGCGCGCGACGGCTCCTGGACCGCCGTGCCGCCCGACGCCGACTCCTTC
TTCGTCAACGTCGGCGACGCCCTGCAGGTACGTACACCCTACACGTCGCGCTGCTCCTGCTCTGCTACACCTACACCTAC
ACCTACACCTACACGGTAGGAGTAC--TTCTCTCAAGGACGTAA-------GTTCGGTGCATGCTACTCTAGATGCTGCT
ACTGCTGTTGCACGTCACTTTTACTGTGGGGGTGCAT----------GGATCTCCAGGCGAGCAAACGAGATCGAGTCAA
TAATGAT-----CAGTGCCCGGTCTCGAGCCTTCTCTCGAGTGTCCACATCAAACAAGG---GCAGCAGCAGTGCAGCAC
GAGGCTACATATATAGCAC------------------TGTATGTGCATGCATACGGCCAGCACGCAGTCGTGTACAGTAC
AGGGCCCGCCCCCTTGAGCCCTGCACGTGAAAACCCTGGCATGATGAATGCTGATAATGCGAGCATGCAT--ATGCATGC
ATGAATTAATAAGACACTAGTATTACTACTACGCAGAGACT-----------------------AGTTTCAGGTGCAACG
CATCGTATTAATTTGGTCCT----------------CGTGCATGCAGGTGTTGACGAACGGGAGGTTCAGGAGCGTGAGG
CACAGGGTGGTGGTGAGCAGCGAGAGGCCGAGGGTGTCCACGATCTTCTTCGGGGGCCCGCCGTTCGGCGAGAGGCTGGC
GCCGCTGCGCCAGCTGCTAGGGGACGGCGGCCGGAGCCGCTACAGGGAGTTCACCTGGAAGGAGTACAAGAGCAGCACCC
ACAAGGGCAGGCTCGCCACCGACCGCCTCTGCAGCTTCGAGAACTAGCCAG----CGACCAGCCGCCTGACAGAGACTAG
CTTCCGTGCGTTACG--TATATACTGCAGGCTATATACTTATGTGTGTGTGTGTGTGTG---TGGTCATGGTCATAGTTA
ACTAATGAAGCCCCGGATATTCAAAA------------------------------------------------------
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------------------------------------------------CGCTCCCGTGCACACGTGCTCTCGCTATCTCG
GCCTCTTTGTCGTTGAGAATGAGACCACCTCTTGTAGCCGGCCCGTATCTCACAAT----------AAATACGTGATATT
CCTATTTGAACTGTAAGGCTCACCTTATTACGCACATAAAGGTAAAGCCATTAGAAAAGCAGGTGCATTTCCCTCAAAAA
AAAAAGAAAAAAGAAAAGCAGGTGCATGAAAGAACAGAAATTGGAGCAGTTGGAGCAATTAGACGAAAAAAATATACAAT
AGCGCAAATTGCTTTTGGAGGCCGAGCTCCATGGAGACCCCCAAATGCAAAAATCAAATTTCGTAAAAATTCATAATCTA
TATCTCAAAAAACTTTGGAAAAAAATACAAAGATAGATGAAGGCATAGTGCACAAGTGTGTAAATTTTTAGGACGAAATA
CATTGAAATGAGGGATGTGCAAAAAAGACAGATTTGAGGCTTTTTAACACATGATATTATTCATCCTCCTAGATCACGAA
TTTGTCTTTTTTATACAGGTCGCATTTCAACGCACATCCCGAGAAAAAAAATCATGGTATAAATTTTCTTTTCCCTCACA
AATCAATAACTTGACTATTTTTAAGTTATGGCAAGTATAGAATTGCCGACACATTGGTAAAGGCATTTTAATACATTTTT
TTAGCTTTGCATTGATATATAGAAAAGTACTGGTTCCTAACACAAACTTGCATTTATCACTAAGTTTTCATTGACTACGA
ATGATAACTTCGTAAACCTTAAGATGATATATCGGATCAATCGCTCGGAGGTACTATGTTTTAGAAAAAAGAAACAAGCA
TATGCGATGAAAAAAAATGTATGGTGGCCATTTAATGCAGGGAAGGAA
>chr3A_6
-----CCATCTAGAACGTGAGATTATCATCCTTAGGTTTGCAAGCGATAAACATAGGCATACATCACACATTATCTGCGT
CCATCTCTTGCACCCGGCGAGGATTTTTTTAGCATGGACAGCTCAGCGGGGCTCCCCGATCACGCAGCCCATTTCTATTT
TTGAAGAAGGAAATGAACCCGGG----CATATCATCCTTGTGGTTCTCCAAGCAAGCGCTGCAAAAGTGTACATCCTTTT
CCATTCTACGGAGTACATTGTACCACCACGCCACGGCATGCAATTCGCGGAATTATTGGCCCATGTACGATTATGTCCAG
C--GTTTTTAGGACCCGTAGGTATCTTGCCTGGCTACACAAGGGCATTTTCCCAGTGTTGGCAAATGGACCCGTGTACGT
CGTCCACATGGAGGTAACTTGCAAGCAATGCTGGCAATGAGCCTTTGATTGTCAAAAGATGACCGTGGCTGAAAATGACC
TTCATCTTTTGCCCATCGTT---CTGAAGGCTCTGACCGAGCTAAGTTTTCTGGAAGTGTAAC-ATGATGGAGTTTCAAG
ATTTTTTGTGTC--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATCCATGCCATTGGTGCTCGGTCCAACGGCCCAGA
TCAATCGAATGCAGCGTCACTGGTGCACGGCACGGTGCAGCGCGCGGAATATTC--AGGCTGTACTTGCACCAACCCAGC
TTGCT-------------GTGCGCCTATATATAGAGGGCAAAGAGCACGGCTCGTATCACTGGACTCGGAGAGCTCTCGC
GCCTACTCGATCGGACCT--TCTTGCCCTGCTTTCTCCTCTGTTTCCTCGAGACCAAGGAAGAAGAAGAAG-CCGGCCAT
GGTGGTCCTTGCCAAGGGCGAGCTGGAGCAGATAGCGCTGCCGGCGGCGCAGCCGCCGCTGGCCCACGTGCGGGCGGTCG
ACCTGTCCGCCGCGCCGGGGCCCGGGCGCGCGGCCGCGGCGCGCGCGCTGGTGACCGCGTGCGAGGAGCAGGGCTTCTGC
AAGGTGACCGGCCACGGGGTGCCGCCGGAGCTCGTGCGCGCCGTGGAGGCGGCCGCGGCGGAGTTCTTCGCGCTGCCGCA
GGCCGACAAGGAGGCCGCCGCGGGGCGGCCGCTCGGGTACGGCAGCAAGCGCATCGGCGTCTCCGGCGACCTCGGGTGGA
TCGAGTACCTCATGCTGGGCGTCACCCCCGCCGGCGCGCTGCCCGCCGCCTCCTTCGCGTCCTGGACATTGCCGTGCGCT
GCCGACGCCGTCGCGGCGTCGCTGTCCGAGCCCCCCTGCCCCTTACGGTGAGTTCGTCCGTTCGCCGCCCATGCACGCTG
GTCG-TTTACATTCGCGCTCCGCGTTTGCACCGGCAGGCGGCACCGCCTCCCGCCGCTGACGAACACATGCACATGCACA
TGCACATGCACATGCACATGCCACGCCACGTTTCT-TTCCCGCCCTATCATGATCTGCTCAGCTCAAAATGCGTGCTCGA
ACCGTCCAATCACTGTCAGTTGTTGGAGAGCATTACCTGAACTCCTAAAGCG---TACCAAAGGTGAATCTTAGCTAGCA
ACACTAGTCAATTTAG-------------------------CGTCAATGACCTTAACACGAAGCTGTAGGATTTTTTTTT
GGTGGAATAGTTTTGTAGTTCCTGAAATTCCTGAAAAGCAAAATTTTGAAAATACAA---GGAGGATTTCCGTGGATAAG
ATTGGCCTTTCGTGGCCGCGTGGAGCTTCACTATTTATCGCGGCCGACGTACGGAGGCGGCGAATCTTTACCGTTTGACT
CACGTGCGGCGGCGACGTAACGGTCGGCCCGTTCCTTTCGATCACTCTCTACTTGCCGTGCTGCCCCGTTCGCACGTGTC
GGCGTCGCCGCGCACCCGTGTCGACGCGCCGCCCGTCCGTCCAGCTACGCACGCACGCACGCACGCTGCCTTTCCGCCGC
TCCGGTTCCGGTGACGTGCTGCCGTTTACACTCCACACTGCCGCTGCCGCTGCCGCTGCCGCGCCCCATCCCTATCCGCA
TCTCTTTTGACATCATCCATTAATCGGAGTCGCAGAAAAATGGTATATGGAGTGACATTTTGATGGTCCATTTTTTGT--
-TGTCAGGGATCTTCTGGAGGAGTACGCGGCGGCGGTGCGGCGGATGGCGTGCGGCGTGCTGGAGCTGATGGCGGAGGGG
CTGGGGGTCGCGCCGGCGGACGCGCTGTCGCGGCTGGTGTCGGACGCGGAGAGCGACAGCATGCTCCGGGTGAACCACTA
CCCGCCGCGGCCGGAGCTGCAGGGCCGCCTCCTGACGGGGTTCGGCGAGCACACGGACCCGCAGATCATCTCCTTGCTCC
GCTCCAACGGCACCTCCGGGCTGGAGATCTGCGCGCGCGACGGCTCCTGGGCCGCCGTCCCGCCCGACCCCGACGCCTTC
TTCGTCAACGTCGCCGACGCCCTGCAGGTACGCACAC-------GCCCCGCT----CTGCTCTGCTACCTACA-------
--------CTACACGGCAGGAGTACTTTTTTCATAGGGACGGACGTACGTGGTACGGTGCATGCAATGCGA-----CGCT
GCTACTGTTGCACGTCACTTTTACTGTGTGCGTGTCA-AAGTCGATCGGATCTCCGGGCGGGCAAATCAGATCGAGTCAA
TGATGAC-----CAGTGCCCGGTCTCGGGCCTTCTCCCGAGTGTCCACATCAAATAAGCGCAGCGGCAGCAGTGCAGCAC
GAGGCTACATATATAGTGCTGCGGTACTGTATATACGTGCATGCGTACAGTTACACCCAGCGCGCGATCGTGC-----AC
AGGGCCCGCCCCCTTGTGCCGTGCACGTGAAAACACTGGCACGACGCATGCTAATAATGCATGCATGCATGCATGCATGC
ATGAGTTAATGAGAGCAAGTTTTCCCTCGCTGTGCTCCTGCTGAATTTATTTGAGACTAGTTTCAGTTTCAGGTGCAACG
CATCGTATTAATTGGGTCGGTCCTGGGGACG-----------TGCAGGTGTTGACGAACGGGAGGTTCAGGAGCGTGAGG
CACAGGGTGGTGGTGAGCAGCGAGAGGCCGAGGGTGTCCATGATCTTCTTCGGCGGCCCGCCGATGGGCGAGAGGCTGGC
GCCGCTGCGACAGCTGCTAGGGGACGGCGGCCGGAGCCGGTACCGGGACTTCACCTGGAAGGAGTACAAGAGCAGCACCC
ACAAGGGCAGGCTCGCGGCCGACCGCCTCTGCAGCTTCGAGAACTAGCTAGCGATCGACCAGCTGTCTGAC--AGACTAG
CTTCCGTGCGTTACGTATATATACTGCAGGCTATATACTTATGTGT----------------------------------
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>chr3D_33
--------------------------------TGGGTTTGCAAGTGATAAATATAGGCATACATCACACATTATCTGCAT
CCATCTCTTGCACCTGGCGAGGATTTTTTTAGCATGGACAGCTCAGCGGGGCTCCCCGTTCATGCAGTCCATTTCTATTT
CTGAAGAAGGAAATGAACCCGGACT----TATTATCCTGGTGGTCCTCTAAGCAAGTGCTGCAAAACT----ATCCTTTT
CTATTCTACGGAGTACATTGTACCACCACGCCACG----GCAATTCACGAAATTATTGGTCCATGTACTATTATGTCCAG
T--GTTTTTAAGGCCCGTAGGTATCTTGCCTGGCTACACAAGAGCATTTTCCCAATGTTGGCAAAAAGACCCGTATACGT
CGTCCACATGGAGTTAACTTGCAAGCAATACTGGCGAAAGGCCTTTGATTGTCAAAAGATGACCGAGGTTGAAAATGACC
TTGATCTCTTGGCCATCGTT---CTGAAGGCTCTGACCGAGCTAAGTTTTCTGGAAGTGTAA------------------
-----------------------------------------------------------------GTGTCATCACTGACG
TAGATAGCACACATTCCGCCTACGTACAGAAGTACTCAAACGGTGGGGATTAACCCGGCACGACGGATACCACGATCTAA
TGCCGCGATGAGCAAAACGGCAACCCATGGCGGTGCCAAGCACCGATCCATGCCATTGGCGCTCGATCTAACGGCCCATA
TCAACGCACTATAGCGTCACAGGTGCACAGCACGGCAGAGCGCGCGGAATATTCAGAGGCTGTACTTGTACCAACCTTCC
---------GGCGGGCCGGTGCGCCTATAAATAGAGGGCAACGAGCTCGGCTCGTATCACTCAACTCGAAAAGCTCTCGC
GCTTGCTCGATCAAGCCTTCTCTTGCCCTGCTTTCTCCTCTGTTTCCTCGAGAACAAGGAAGAAGAAAAAG-CCGACCAT
GGTGGTCCTTGCCAAGGGCGAGCTGGAGCAGATAGCGCTGCCGGCGGCCCAGCCGCCGCTGGCCCACGTGCGGGAGGTCG
ACCTGTCCGCCGCCCCGGGGCCCGGCCGCGCGGCCGCGGCGCGCGCGCTGGTGTCCGCGTGCGAGGAGCAGGGCTTCTTC
AAGGTGACCGGCCACGGGGTGCCGCCGGAGCTCGTGCGCGCCGCGGAGGCGGCCGCGGCGGAGTTCTTCGCGCTGCCGCA
GGCCGAGAAGGAGGCCGCCGCTGGCCGGCCGCTCGGGTACGACAGCAAGCGCATCGGCGTCTCCGGCGACCTCGGGTGGA
TCGAGTACCTCATGCTGGGCGTCACCCCCGCCGGCGCGCTGCCCGCCGCCTCCTTCGCGTCCTGGACATTGCCGTGCGCA
GG---CGCCGCCGTCGCGTCGCTGTCCGAGCCCCCCTGCCCCTTACGGTGAGTTCGTTCGCTCGCCACCCATGCACGCTG
GACATTTTACATTCGCCCTCCGCGTCTGCACCGGCA-------CCCCCTCCCTCCGCTGACAAACACATGCACATGCA--
--------------CACATGCCACGCCACGTTTTTCTTCCCGCCCTCTCGTGATCTGCTCAGCTCAAAATGCCTGCTCGA
ACAGTCCAATCACTGTCA---GTTGGAGAGCATTACCTGAACTCCTAAAGTGTACTACCAAAAGTGAATCTTAGCCAGCA
ACACCAGTCAATTTAGCCATGTCTCTCAAAGTCTGAAGAAACGTCAATGACATTAACACGAAGCTGTAGGATTTTTTTAT
CGTCGAATGGTTTTAGAGTTCCTGAAATTCCTGAAAAGCAAA--TTTGAAAATACAAGATGGAGGATTTCCGTGGATAAG
ACTGGCCTTTCGTGGCCGCGTGGAGCTTCACTATTTATCGCGGCCGACGTACGGAGGCGGCGAATCTTTAACGTTTGACT
CACGTGCGGCGGCGACGTAACGGTCGGCCCGTTGTTTTCGATCACTCTCTACTTGCCGTGCTGCTCCGTTCGCACGTGTC
GGCGTCGCCGTGCACCCGTGTCGACGCGCCGCCCGTCAAGCT------------ACGTACGTACGATGCCTTTCTGCCGC
------TCCGGTGACGTGCTGCCGTTTACACTCCACACTGCCGC------------------GCCCCATCCCTATCCGCA
TCTCCTTTTGACA---TCATTAATCAGAGTCGCGCAATAATAC---GTGGAGTGATATTTTT-TGGTCGTTTTTTTGTTG
CTGTCAGGGATCTTCTGGAGGAGTACGCGGCGGCGGTGCGGCGGATGGCGTGCGGCGTGCTGGAGCTGATGGCGGAGGGG
CTGGGGATCGCGCCGGCGGACGCGCTGTCCCGGCTGGTGGCGGACGCGGAGAGCGACAGCATGCTCCGGGTGAACCACTA
CCCGCCGCGGCCGGAGCTGCAGGGCCGCCTCCTGACGGGGTTCGGCGAGCACACGGACCCGCAGGTCATCTCCGTGCTCC
GCTCCAACGGCACCTCCGGGCTGGAGATCTGCGCGCGCGATGGCTCCTGGGCCGCCGTGCCGCCCGACCCCGACTCCTTC
TTCGTCAACGTCGCCGACGCCCTGCAGGTACGTACAC-------GTCGGGCTGCTCTGCCTCTGCTACACCTA-------
--CTACTCCTACATGGTAGGAGTACTTTTCTCTCAAGGACGTGA-------GTACGGTGCATGCTA---GA-----TGCT
ACTACTGTTGCTCGTCACTTTTACTGTGGGTGCATGTCAAGTCGATCGGATCTCCAGGCGAGCAAATCAGATCGAGTCAA
TAATGATCAGATCAGTGCCCGGTCTCGAGCCTTCTCTCGAGTGTCCACATCAAACAAGG---GCAGCAGCAGTGCAGCAC
GAGGCTACAAATATAGCAC------------------TGTATGTGCATGCATACGGCCAGCACGCAGTCGTGT-----AC
AGGGCCCGCCCCCTTGATCCCTGCACGTGAAAACCCTGGCATGATGAATGATAATAATGCGG--------GCATGCATGC
ATGAATTAATAATTATTCT----------------GAGACT-----------------------AGTTTCAGGTGCAACG
CATCGTATTAATTTGGTCCTCGTGCGGTTTCGTGGGCGTGCATGCAGGTGCTGACGAACGGGAGGTTCAGGAGCGTGAGG
CACAGGGTGGTGGTGAGCAGCGAGAGGCCGAGGGTGTCCATGATCTTCTTCGGCGGCCCGCCGTTCGGCCAGAGGCTGGC
GCCGCTGCGCCAGCTGCTAGGGGACGGCGGCCGGAGCCGCTACAGGGAGTTCACCTGGAAGGAGTACAAGAGCAGCACCC
ACAAGGGCAGGCTCGCCACCGACCGCCTCTGCAGCTTCGAGAACTAGCCAG----CGACCACCTGCCTGAC--AGACTAG
CTTCCGTGCGTTACG--TATATACTGCAGGCTATATACTTATGTGTGTGTGTGATGAATGCATGATCATGATCCTAGTTA
ACTAATGAAGCCCGGATATTGAAAACGGATTTGCTAAATCTCATCTACTACCTCCGTCCTTATTTATTGGTGCTTTCGCT
TTTTGTGTCAAATTTTGATCTTAGATTTAACTAACAAAAGGTTAATGCATGTAACAGAAAATAATATCATTGGGAACTAT
GTTTAAATACGAATCCGATGATATAATATTTTGTGACATGCATTATTATTTTCTTAGTTAAATTTATGAGTAAAATTTGG
CACAAAATATTAAGGGGACTAATAAACCAGGACGAAGGTAGTAGATGAGAAATAACAAAGTCTCATTTAACTCCTACATA
TCATTTGAGTAATCAAACAAAAAATAAAAATAATAAACCTGCATGAATCTTCATCAAAATCAAGTGGTATTGGGAGTTAG
ATGTGACTTGGTTAAGTCTCATACATCTAGATGAAAGCTAGACACACCCGCTCCCGTGTACAAGTGCTCTCGCTATCTGG
GCCCCTTTATCGTCGAGAATGAGACCACCTCTTGTATTCGGCCCGTATCTCACAACAAATAAATAAAAATACGTAATATT
CTTATTTGAACAATAAGGTTCCCCTTATTACGCAGATAAAGGTAAAGCCATT----------------------------
-----------AGAAAAGCAGGTGCATGAAAGAACAGAAATTGGAGCA--------------------------------
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------------------------------------------------
>SNPs
SSSSS---------------------SS-S--------S------------------------S-----S----------
-S-----------------------------------------------------------------------S------
------------------------SSS----------------------S-------------S----------SS-SS-
S-SS-SSS------S-----------------------------S-----S----------------SSSSSSSS-SSSS
-SS--S----------SS-S----------------SS------------S-SS--S-------------S---------
-----S-----S---------S--------SS--------------------------------S--S------S-----
SS----SSSSSS-SS--SSSSSS---------------S-SS------------------S--S--------S-------
-----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
----S-S------------S-------S-----S----S----SS--------S--------SSSSS-------------
--SSS--------S---------------SS-SSS-S-S----------S-------------------S----------
------------------------------------------------------------------------------SS
S-S-SSSSS-----------------------------------------------------------------------
----------------------S---------------------------------------------SS-S--------
------S-----------------S--------------------------------------------S------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------S----------S------------------------------------S----------------------S
--------------------S-----------------------S---------------------------------SS
------------S-------------------------------------------------------------------
------------------------------------------------------------S--------------S----
--------------------------------------------------------------------------------
--------------SS-SSSSS-SSSS----------------------------------------S-----------S
---S---------S-SS-------------------------------------S---------S---------------
S-S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
---------------------------S----------S-------------------------------S---------
---------------------------S-----S--S-----------S-------------S-----S-----------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
-------------S------------------------------------S-----------------S-----------
-------------S-----------------------SSSSSSS-----------------------------SSSSSSS
SS----S----------------------------------------------S------------SS-S-SSSSS----
---S--------------------------S---SS------------------------------SS------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SSSSS--
----------------------------------------------------S--------S------------------
--------------SSSSSS-S-SS--SSSSSSSS---------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S------------S--------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-------SS-------
-----------------------------------------------------SSSSSS-----S-----S--S------
-------------S-SSSS-SS---S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---S---------------S-
---S----S----S----------------------SS-----------------S------------------S-----
-S---------SS-----S--S------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_412
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------------------------------------------------------------------------GTATACGT
CGTCCGCATGGT--------------------------------------------------------------------
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>reverse_1775
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GCCAGGTCCCTAAAACACGA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_588
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TGTCGCCAGCAAGGAATTCT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2629
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------GCCGACTCCTTC
TTCGTCAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_674
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TCCGCGTACGTACTGAAGTG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_2792
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GATGCTGCT
ACTGCTGTTGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>forward_2654
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCCTTC
TTCGTCAACGTCGG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>reverse_4585
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTCAACGCACATCCCGAGA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
