>input_sequence_35182
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-------------------------------------------------------------------------------A
TGGGCGCTGCCTACTACCTCAGGTGCTTTGGGTTTGGCGGGTGCGTGCACCCTCACCCCGCTGCGGTTGCTGACCGCCAA
GGTACGTGCATACGTACGTACGTATGTTGTGTAAACAATTAAT----------ACCTGTAATACTTGCGTGCATTTTTGG
CCACTTTGAGTAATATATTCAGATGGAGGAACTCCTTCCTCGGTGATTCTCAAAAAAAAAAGAAAAATACATGTAATACT
TACGTGCATCGATCCCGTGCTA----ATTGTTCTCGTTAGCTGGTGTATATATACGTGTACTGTCTCTC---TGTTCTTC
ATATGGTTTCACCACTCAAATTTGAGCTTTGACACCCTCAAAAAGAATTTTGAGCTTTGACTAGTATGGGAAGAACAAGA
ATATATACTTGC-------TACGTATAGTTGGCCACTAATAAC---TAGTAGTAATTTCATTTTTCTCCAAGAGT-----
-----------------------AGCTAGCTAGCTAGGACCAATTGTCCTAGCCATCCTGCATCGGACTCGGTA------
----------------------------------GGGCCGGAGGAGGAGCCAGCCGGCCTGTGG---TATGTGCCGGGTG
CGAAAGCCAGCCGCGGTAGCGTACGGCGGCGCGTGCATGCATGCGTGCCGGAGCACGGCAGACATCTCCACAAAGCAACC
AAACCTTCTT---TGGCGTCGCCTCGCTTCGACACATACGTACATGCCCAGGCCCAATCATCATTAGCACCACTATCCCC
CTTCATTAGCCTGCCGACTTAACTAGCCGGT---TTATCCACACGTATATAGCTAGACCGTTTCGCATATGTGAGATGTC
CATTCACCAAAG---AATTCACCTTGCTTGTTCATTATCTCGCCGGCCGGCACCCAGAGAGATCAGAGATGGCCGTCGGT
ACCATGATGTTCAAGTGTTTCGGCCCGTGGCCGTGCACGCGGCGGCGTCACCCGCAACAAGGTAGCCAGCCCCAGCCGCC
CACAGAGCTCGCGCGCGCGCTCACCACGTCGTC----------CTGCACGCATCGACCGTGCACATCTTTGATGATTTCC
ATCAGCTGCTTCTCGTACGCCTGCTAATCCTTTCTTTCTTTGGTGATGGCACGCAGGAGCTCGCCACCGTGACCCCAAGA
AGCCGACGGGCCAGCTGCAGAGCGCGGCGTCGTCGGCCTCGGCGTCGTCCTCGTCGGGGCTGGACTTCCGGGAGGAGTAC
ACCAGCGCGTTCCGCACCGAGTCCTACAACGACTTCTGGGCGCGGGTGCTGGACATCACGCTCGCCCACGGCGCCGCCCT
CGTGCCCAGGCCCGCCTCCGCCACCAGCGCCGCCTCCAAGCGCCTCTCCTCCTACCGCGTCTTCGCCGAGCACCTGCTCG
ACCCCGACCAGGCCGCCGCCGCCGCCGCGCTCGCCTCCGCGCGCAACCGCCCGGACGTGCACGGTCTCCTCTCCGCCTAC
TACGACGAGACGGCCGGCGCCTCCTTCCTCTGCAGCCACCTCCTCAAGGACATCGAGCAGATCCGCCTCCGCTACCGCCC
GCTCAAGGCCGCGCTCCGCGGCAGGCTCGGCCCCGGCGGGAGCCTCGCCGACGTCTCCGCCGCGCTCGGGAGGCCATTCA
CCGCGCTGGCGGCCACGCAGGGCAGGCTCGGGGACGCGCGGCTCAGCTCCGCGGAACTCCTCAAGGGCCTCGACTGCGGC
AGGAAGGCCGCGCGCCGCAGGATCAGGACGCTCGCCCGGCTCAGGCAGGCGCTCTCGGTGTCCTTCGTCACGGTCGTCGC
CGTCGTGGCTGTCGTCGGCGCGTGCGTCGGCGTGCACGTCCTGGCGGCGTTCGCGGCGTTCCCGATGATGTCGCCCGCGT
GGATGGGGCTCTTCAGC---------------------------------------------------------------
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---------------------------------------------------------------------GGCCGCGCGGC
GCGCCGGGCGCTGGTGCAGCTGGAGGCCGCGGCCAAGGGCACCTACATCCTCAACCGGGACATGGACACCATCAGCCGGC
TGGTGGAGCGGGTGCGCGACGAGGGGGAGTACATGCTCGCGCTGCTGCAGCTCTGCGTGGCCGAGGAGGCCGCCGCCGGC
GCCGGTGCCGGGAAGGGGAGGCTGGTGCGGGAGGTGCTGAGGCAGCTGTGCAAGAACGAGGAGAGCTTCAGGCAGCAGCT
GGACGAGCTGGAGGAGCACCTCTTCCTCTGCTTCATGACCATCAACAAGGCCAGGAGCATGGTCATCAAGTTCATGAGCA
CTGCTGCAAGCCGGT----GATCACTGATCAGCAGGGCACACTTCGGATTGTACATAATAGCA------------TT--C
TTTTTTCATAAAACAGCAAGAAAAAAACCCCGAAAAA--GTGAGATAAAAATTGGGATTTGAA-----------------
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>chr4A_1_TraesCS4A01G414000
CAGGGATATATGTTCCAGGATCAAAAGCCGTCTCGATCTCGATTGGTGTCGCGTGTGCGTGGCGCTCTGAGTATGTCATT
TCTTCATTGATTAGCTGGTTCGGAATTTCCTAAAACAACAGCAATTCTCATGCATATGTTACTACGTCGGTCGATCTTCA
CGTACTGCAGTCGCCGATGAGGTCGATGTGGTGGTCGCCGGTACGCACGCACGCACGCACGATGGCGTCGGCGGCCGGAG
TCGAGGTCGGTGGAAGGCGTGCCCGCGCCACCTTTCCCGATCGAACTCGCAAGGACAGACGCAAATCCAGTCATCCATCC
ATCCATCCATCCATCCATCCCCAGGTTCCGCGCCGCCACCCACGCAGGATGAGACGAGGATCCCATCGTGGAGCCGGCGG
GCCAC---------------------------------GCGCGAAGGCAACGCGCCGGCGATGGATAGATAGATGCTGGC
CCGCGTCCG------------------------------TCCGACGGGCCTCCGCACGCGGCCCCTGGAAACCCGACGAC
GACGACGATAACGATGGCTTGGTCGAGCCTAGCCTTGTGTCGTAGCTGCGTTCCTTCCTTTTTGATGATGGTGGCTTTGT
GTTTGCCTTGGAGTGGTTGCCAACCTCGACCGGCCGGTCTTGGGCATGCTTCCAAGCTTCGTCGTCGTCCTCCAACTAGC
TCCAACCGATGATTGGATTTGGAAGGAAGGTCGATGGCTTGCCTTTCCGCCCAAGCTAGCTACGATCCACTGCACCACCA
CCGCAGACACGGCGGTGTCTTAACGGCCGGAGCGCCGAGGCCGACAGGCTTTATAAGCTAGCCA--------------GC
CTGTGCTTGTCCCATCACAG------------GG---CAGCCTCATTGTTTCACTTGGACGGGAAGAGACACGTACACAG
ACACTACGTCCTAGCT------------TAGCCACCCTGGTCAAAGGGAG---CAGACATACCTCCGCCTGTTGTATATA
CGTACGCGCACA--------C----ACGGGAGTGGCTAGCATCGGCGAAACAGTGCATGCACTAATTGGTTTTTCATCCA
TGGGCGCTGCCTACTACCTCAGGTGCTTTGGGTTTGGCGGGTGCGTGCACCCTCACCCCGCTGCGGTTGCTGACCGCCAA
GGTACGTGCATACGTACGTACGTATGTTGTGTAAACAATTAAT----------ACCTGTAATACTTGCGTGCATTTTTGG
CCACTTTGAGTAATATATTCAGATGGAGGAACTCCTTCCTCGGTGATTCTCAAAAAAAAAAGAAAAATACATGTAATACT
TACGTGCATCGATCCCGTGCTA----ATTGTTCTCGTTAGCTGGTGTATATATACGTGTACTGTCTCTC---TGTTCTTC
ATATGGTTTCACCACTCAAATTTGAGCTTTGACACCCTCAAAAAGAATTTTGAGCTTTGACTAGTATGGGAAGAACAAGA
ATATATACTTGC-------TACGTATAGTTGGCCACTAATAAC---TAGTAGTAATTTCATTTTTCTCCAAGAGT-----
-----------------------AGCTAGCTAGCTAGGACCAATTGTCCTAGCCATCCTGCATCGGACTCGGTA------
----------------------------------GGGCCGGAGGAGGAGCCAGCCGGCCTGTGG---TATGTGCCGGGTG
CGAAAGCCAGCCGCGGTAGCGTACGGCGGCGCGTGCATGCATGCGTGCCGGAGCACGGCAGACATCTCCACAAAGCAACC
AAACCTTCTT---TGGCGTCGCCTCGCTTCGACACATACGTACATGCCCAGGCCCAATCATCATTAGCACCACTATCCCC
CTTCATTAGCCTGCCGACTTAACTAGCCGGT---TTATCCACACGTATATAGCTAGACCGTTTCGCATATGTGAGATGTC
CATTCACCAAAG---AATTCACCTTGCTTGTTCATTATCTCGCCGGCCGGCACCCAGAGAGATCAGAGATGGCCGTCGGT
ACCATGATGTTCAAGTGTTTCGGCCCGTGGCCGTGCACGCGGCGGCGTCACCCGCAACAAGGTAGCCAGCCCCAGCCGCC
CACAGAGCTCGCGCGCGCGCTCACCACGTCGTC----------CTGCACGCATCGACCGTGCACATCTTTGATGATTTCC
ATCAGCTGCTTCTCGTACGCCTGCTAATCCTTTCTTTCTTTGGTGATGGCACGCAGGAGCTCGCCACCGTGACCCCAAGA
AGCCGACGGGCCAGCTGCAGAGCGCGGCGTCGTCGGCCTCGGCGTCGTCCTCGTCGGGGCTGGACTTCCGGGAGGAGTAC
ACCAGCGCGTTCCGCACCGAGTCCTACAACGACTTCTGGGCGCGGGTGCTGGACATCACGCTCGCCCACGGCGCCGCCCT
CGTGCCCAGGCCCGCCTCCGCCACCAGCGCCGCCTCCAAGCGCCTCTCCTCCTACCGCGTCTTCGCCGAGCACCTGCTCG
ACCCCGACCAGGCCGCCGCCGCCGCCGCGCTCGCCTCCGCGCGCAACCGCCCGGACGTGCACGGTCTCCTCTCCGCCTAC
TACGACGAGACGGCCGGCGCCTCCTTCCTCTGCAGCCACCTCCTCAAGGACATCGAGCAGATCCGCCTCCGCTACCGCCC
GCTCAAGGCCGCGCTCCGCGGCAGGCTCGGCCCCGGCGGGAGCCTCGCCGACGTCTCCGCCGCGCTCGGGAGGCCATTCA
CCGCGCTGGCGGCCACGCAGGGCAGGCTCGGGGACGCGCGGCTCAGCTCCGCGGAACTCCTCAAGGGCCTCGACTGCGGC
AGGAAGGCCGCGCGCCGCAGGATCAGGACGCTCGCCCGGCTCAGGCAGGCGCTCTCGGTGTCCTTCGTCACGGTCGTCGC
CGTCGTGGCTGTCGTCGGCGCGTGCGTCGGCGTGCACGTCCTGGCGGCGTTCGCGGCGTTCCCGATGATGTCGCCCGCGT
GGATGGGGCTCTTCAGC---------------------------------------------------------------
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---------------------------------------------------------------------GGCCGCGCGGC
GCGCCGGGCGCTGGTGCAGCTGGAGGCCGCGGCCAAGGGCACCTACATCCTCAACCGGGACATGGACACCATCAGCCGGC
TGGTGGAGCGGGTGCGCGACGAGGGGGAGTACATGCTCGCGCTGCTGCAGCTCTGCGTGGCCGAGGAGGCCGCCGCCGGC
GCCGGTGCCGGGAAGGGGAGGCTGGTGCGGGAGGTGCTGAGGCAGCTGTGCAAGAACGAGGAGAGCTTCAGGCAGCAGCT
GGACGAGCTGGAGGAGCACCTCTTCCTCTGCTTCATGACCATCAACAAGGCCAGGAGCATGGTCATCAAGTTCATGAGCA
CTGCTGCAAGCCGGT----GATCACTGATCAGCAGGGCACACTTCGGATTGTACATAATAGCA------------TT--C
TTTTTTCATAAAACAGCAAGAAAAAAACCCCGAAAAA--GTGAGATAAAAATTGGGATTTGAATTGGTCTTTTTTTGGGT
TTG-GTTGTTGTACATACACGCTGCATATTGCAGAATTTGAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTGTC
GAGGGTCTCTGTCGGGCAAAGCTCAAGCAGTGCCGGCGGCGGCGAGGTCTTCCGTGGGCACGTCTCTATTGGGAAACGTA
GTAGAAAACAAAAAAAATTGTCCTATGAACACCCAAGAACAATATGAAGATGCATAAACGAGTTGTGATCAATGATCGTT
ACCGACTCTGGAGGTGCAGTGAAAGTAGACGAGTCGGTGCAGATCGTACTTGAAATCTCTCGAGCGTTGATGGTGATCCT
GCAAACCGCCCATGAATGATCCCTCGAACGGAAGACCGAAAGCACGGCCTCTCTACTTGGTTGCAAGCGTATGGTCTTCA
CGATCCAGTAGTGCTTCGCCGTCCAGAGCTAATCATCGCCGGAGAATTAGAAGGAGAAGATTAGAACCACACGGGACTTC
GAATTATGAGGATTAGAGGTGGCCAAGGCTCGCTCTAATTAGTCAACTAGGATCAACTAGAACGCGCACTAAATCAACTA
GAGGAGGATTCAAAACTTATCTAATCATAGGGTGGACATCCTCTAGTATATACTCCCTCCATCCAAAAATAAGTGACTCG
ACTTTGTACCAACTTTGTACTAAAGTTAGTACAATGTTGAGTCACTTATTTTGGAACGGAGGGAGTATATGATTGGGGGT
GGGGGAGAGGGGGCTGTCACCAAG
>chr4B_245
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----GGTCCGTCGAAGGCGTGCCCGCGCCACCTTTCC----CGAACTCGCAAGGACAGACGCA-----------------
------------ATCCATCCCCAGGTTCCGCGCCGCCACCCACGCTGGATGAGATGAGGATCCCATCATGGAACCGACGG
GCCCCACGTCGCGTTCCTGGCTCGCCACGTCCGACCATGCGCGAAAGCAACGCGCGGGAGATCTATGGATAGATTACCGG
CCCCGTCGGGGCGCTGCGCCACGGTCCGTCCAGGCCGGATCCGAAGGGCCTCGGCA----GCCCCTGGAAAACCAAACCA
----ACGATAACGATGGCTTGGTCGA-CCTAGCCTTGTGC-----------TCCTTCCTTTTCGATGGATTTGT------
-TTTGCCTTTGAGTGGTTGCCAACCT----CGGCCGGTCTTGGGCATGCTTCCAAGCTTCGTCGTCGTCCTCCAACTAGC
TCCAACCGATGATTGGATTTGCAAGGAAGATGGGTGACTTGCCTTTCTGCCCA----AGCTACGATCCACTGCACCAC--
----AGACGCGGCGGTATCTTAACGGCCGGAGGCAGACAGA-GACAGGCTTTATAAGCTAGCCTGTGCTTGTGCTTCTGC
TTGTGCTTGTCCCGATCCATCCATCCATCACAGG---TAGCCTTGTTCTCTCACTTGGACGGGAAGGAACAC--------
----------------------------------------------------ACAGACATACCTCCGCCTCTTGTATATA
CGTACGCGCACGCACAGACGC----ACTGGAGTAGCTAGCATCGGCGAAACAGTGCA----CTCATTGGTTGTTCATCCA
TGGGCGCCGCCTACTACCTGAGGTGCTTTGGACTTGGCGGGTGCGTGCACCCTCACCCTGCCGCGGCTGCAAACCGCCAA
GGTACGTGCATACGTACGTACGCATGTTATGCAACCAATTAAT----------AC-------------------------
-----------------------------------------------------------------------TGTAATACT
TACGTGCATCTACACCGTGCTG----ATTGTTCTCGTTAGCTAGTGTAATTG--------CTGTCTCTCTGTTGTTCTGC
ATATGGTTTCACCACTCAAATTTGAGCTTC----------------------------GACTAGTATGGAAAGAACACGA
ATATGTACTTGCAACTTGCTACGTATAGTTGGCCACCAAGCACTAGTAGTAGTAACTTCATTTTTCTCCAAGGGAAGATA
CTCACTGGCTGCTAGCTAGCTAGGA-------------------------------------------------------
---------------------------------------------------------CCTGTTGTACTATGTGCCGGGTG
CCAAAGCCAGCCGCGGTAGCGTACGGCGGCGCGTGCATGCATGCGTGCCGGAGCACGGCAGACATGTCCACAAAGCAACC
AAACCGTCTTTGGTGGCGTCGCCTCGCTTCGACACATAGAT----------GCCCAATCATCATTACCACTACTATCCCC
GTTCATTAGCCTGCCGACTTAACCAGCTAGCCGGTTAGCCACACGTATATAGAGCGTTCGCAT------------ATCTC
CATTCACGAAATAAGAATTCAACCTGCTTGTTCATTAATTCGCCGGCCGGCACCCAG-------AGAGATGGCCGTCGGT
GGCATGATGTTCAAGTGTTTCGGC------CCGTGCATACGGCGGCCTCACCAGCAAGGTAG---------CCGGCCGCC
CTCAGATCGAGCTCGTGCGCTCACCAGGCGCGCCGCGCCCTAGCCGCATGCATCCATCGTGCACGTCCTGATTTC-----
--CATCCGGTTCTCATGTGTCTACTAATCCTTTCGTTTCTTGGTGATGGCATGCAGGAGCTCGCCAGCATGACCCCAAGA
AGACGACGAGCCAGCTGCAGAGCGCGGCGTCGTCGGCGTCGGCG------TCGTCGGGGCTGGACTTCCGGGAGGAGTAC
ACCAGCGCGTTCCGCACCGAGTCCTACAACGACTTCTGGGCGCGGGTGCTCGACATCACGCTCGCCCACGGCGCCGCCCT
CGTGCCCAGGCCCGCCTCCGCCGCCAGCGCCGCGTCCAAGCGCCTCTCCTCCTACCGCGTCTTCGCCGAGCACCTGCTCG
ACCCCGACCAGGCCGCCGCCGCCGCCGCGCTCGCGTCCGCGCGCAACCGCCCGGACGTGCACGGCCTCCTCTCCGCCTAC
TACGACGAGACGGCCGGCGCCTCATTCCTCTGCAGCCACCTCCTCAAGGACATCGAGCAGATCCGCCTCCGCTACCGCCC
GCTCAAGGCCGCGCTCCGCGGCAGGCTCGTCCCCGGCGGGAGCCTCGCCGACGTCTCCGCCGCGCTCGGGAAGCCCTTCA
CCGCCCTGGCGGCCACGCAGGGGAGGCTCGGGGACGCGCGCCTGAGCTCCGCGGACCTCCTCAAGGGCCTCGACTCCGGC
AGGAAGGCCGCGCGCCGCAGGATCAGGACGCTCGCCCGGCTCAGGCAGGCGCTCTCGGTGTCCTTCGTCACGGTCGTCGC
CGTCGTGGCCGTCGTCGGCGCCTGCGTCGGCGTGCACGTCCTGGCGGCGTTCGCGGCGTTCCCGATGATGTCGCCGGCGT
GGCTGGGGCTCTTCAGC---------------------------------------------------------------
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---------------------------------------------------------------------GGCCGGGGGGC
GCGCCGGGCGCTGGTGCAGCTGGAGGCCGCGGCCAAGGGCACGTACATCCTCAACCGGGACATGGACACCATCAGCCGGC
TGGTGGAGCGGGTGCGCGACGAGGGGGAGTACATGCTCGCGCTGCTGCAGCTCTGCGTGGCCGAGGAGGCCGCCGCCGGC
GCCGGCGCCGGGAAGGGGAGGCTGGTGCGGGAGGTGCTCAGGCAGCTGTGCAAGAACGAGGAGAGCTTCAGGCAGCAGCT
GGACGAGCTGGAGGAGCACCTCTTCCTCTGCTTCATGACCATCAACAAGGCCAGAAGCATGGTCATCAAGTTCATGACCA
CCGCCGCAAGCCAGTGATCGATCACCGGGCATCAGGGCACACTTCAGACTGTACATAATACAGTAGCAGCATTCTTT--T
TTTTTTCATAAAACAGCAAGCAAGAAAAACCGAAAAAAGTGAGATAAAAAAATAGGATTTCAATTGGCCTTTTTGGGTTT
GATTATTGTTGTACATACACGCTGCATATTGCAGAATTTGGAGTA-----------------------------------
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>chr4D_579
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-TTTGCCTTTGAGTGGTTGCCAACCTCGATCGGCCGGTCTTGGGCATGCTTCCAAGCTTCGTCGTCGTCCTCCAACTAGC
TCCAACCGATGATTGGATTTGCAAGGAAGACGGGTGACTTGCCTTTCTGCCCA----AGCTACGATCCACTGCACCAC--
----AGACACGGCGGTATCTTAACGGCCGGAGGCAGACAGA-GACATGCTTTATAAGCTAGCC------------TCTGC
TTCTGCTTGTCCCGATCCATCCATCCATCACGCATCACAGCCTCATTCTTTCACTTGGACGGGAAGAGACACGTAGGTAC
ACTACACACCCTCCACCCTAGCCCTAGCTAGCTACCCCGATCAAAGGAGCATACATACATAACTCCGCCCGTTGTATATA
CGTACGCGCACA--------CACGTACTGGAGTAGCTAGCATCGGCGAAACAGTGCA----CTGATTGGGTTTTCATCCA
TGGGCGCCGCCTACTACCTCAGGTGCTTTGGATTTGGCGGGTGCGTGCACCCTCACCCTGCCGCGGCGGCAAACCGCCAA
GGTACGTGCATACGTAAGTACGTAGGCATGTTGTGCAACAACTAATACGTACCAC-------------------------
-----------------------------------------------------------------------TGTACTACT
TACGTGCATCGATCCTGTGCTAATTAATTGTTCTCGTTAGCTAGTGTATATGTACGTGTACTGTCTCTC---TGTTCTGC
ATATGGTTTCACCACTCAAATTTGAGCTTTGAACTAGTATA-----------------------TATGGAAAGAACAAGA
ATATATACTTGC-------TACGTATAGTTGGCCACTAAGCACTAGTAGTAGTAACTTCATTTTTCTCCAAGGGAAGACA
CTCACTGGCTACTAGCTAGCGAGAGCTAGCTAGCTAGGACCGCTTGCCCTAGCTACCCTACCTATATGTGGGAGCAGCTA
GCAAGCGACCGAACACAAACGTTCGGTCGGACTCGGGCCGGAGGAGGAGCCAGCCGGCCTGTTGTACTATGTGCCGGGTG
CGAAAGCCAGCCGCGGTAGCGTACGGCGGCGCGTGCATGCATGCGTGCCGGAGCACGGCAGACATCTCCACCAAGCAACC
AAACCGTCTT---TGGCGTCGCCTCGCTTCGACACATAGAT----------GCCCAATCATCATTACCACCACTATCCCC
GTTCATTAGCCCGCCGACTTAACCAGCTAGCCGGTTAGCCACACGTATATAGACCGTTCGCAT------------ATCTC
CATTCACGAAAGAAGAATTCAACCTGCTTGTTCATTAATTCGCCGGCCGGCACCCGG-------AGAGATGGCCGTCGGT
GGCATGATGTTCAGGTGTTTCGGC------CCGTGCATGCGGCGGCCTCACCAGCGAGGTAG---------ACGGCCGCC
CTCAGAGCTCGCGCGCTCACCA-------------CGCCCTAGCCGCATGCATCCATCGTGCACGTCCTCATTTC-----
--CATCCGGTTCTCGTATGTCTACTAATCCTTTCGTTTGTTGGTGATGGCATGCAGGAGCTCGCCACCATGACCCCAAGA
AGACGACGAGCCAGCTGCAGAGCACGGCGTCGTCGGCGTCGTCG------TCGTCGGGGCTGGACTTCCGGGAGGAGTAC
ACCAGCGCGTTCCGCACCGAGTCATACAACGACTTCTGGGCGCGGGTGCTCGACATCACGCTCGCCCACGGCGCCGCCCT
CGTGCCCAGGCCCGCCTCCGCCGCCAGCGCCGCGTCCAAGCGCCTCTCCTCCTACCGCGTCTTCGCCGAGCACCTGCTCG
ACCCCGACCAGGCCGCCGCCGCCGCCGCGCTCGCGTCCGCGCGCAACCGCCCAGACGTCCACGGCCTCCTCTCCGCCTAC
TACGACGAGACGGCCGGCGCCTCCTTCCTCTGCAGCCACCTGCTCAAGGACATCGAGCAGATCCGCCTGCGCTACCGCCC
GCTCAAGGCCGCGCTCCGCGGCAGGCTCGTCCCCGGCGGGAGCCTCGCCGACGTCTCCGCCGCGCTCGGGAAGCCATTCA
CCGCCCTGGCGGCCACGCAGGGCAGGCTCGGGGACGCGCGGCTCAGCTCCGCGGACCTCCTCAAGGGCCTCGACTCCGGC
AGGAAGGCCGCGCGCCGCAGGATCAGGACGCTCGCCCGGCTCAGGCAGGCGCTCTCGGTGTCCTTCGTCACGGTCGTCGC
CGTCGTGGCCGTCGTCGGCGCGTGCGTCGGCGTGCACGTCCTTGCGGCGTTCGCGGCGTTCCCGATGATGTCGCCGGCGT
GGCTGGGGCTCTTCAGC---------------------------------------------------------------
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---------------------------------------------------------------------GGCCGGGGGGC
GCGCCGCGCGCTGGTGCAGCTGGAGGCCGCGGCCAAGGGCACGTACATCCTCAACCGGGACATGGACACCATCAGCAGGC
TGGTTGAGCGGGTGCGCGACGAGGGGGAGTACATGCTCGCGCTGCTGCAGCTCTGCGTGGCGGAGGAGGCCGCCGCCGGC
GCCGGCGCCGGGAAGGGGAGGCTGGTGCGGGAGGTGCTCAGGCAGCTGTGCAAGAACGAGGAGAGCTTCAGGCAGCAGCT
GGACGAGCTGGAGGAGCACCTCTTCCTCTGCTTCATGACCATCAACAAGGCCAGGAGCATGGTCATCAAGTTCATGGCCA
CCGCCGCGAGCCGGT----GATCACTGATCAGCACGGCATACTACAAACTGTACATAAT--------AGCATTCTTTCTT
TTTTTTCATAAAACAGCAAGGAAAAAATACCCAAAAAAGGTGAGATAAAAATTAGGATTTGAATTGGTCTTTTTGGTTTT
GGTTGTTGTTGTACATACACGCTGCATATTGCAGAATTTGAAGTA-----------------------------------
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>chr5A_2340
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---------------CCGCCGCTGTAGCGCTCGCGTACGCGCGCAACCACCCGAACGTCCATGGCCTCCTCTCCGCCTAC
TACAACGAGACAGCCGACGCGTCCTTCCTTTACAGCAACCTCCTTAAGGACATCGAGCAGATCCGCCTCCACTACCGCCC
GCTCCAGGCCACGCGCCGCGGCAGGCTCGTCCCCGGATGGAGCCTCACCTATGTCTCCTCCGTGCTCGGGAGGCCCTTTA
CTATGTTGGCGGCCATGCAGGGCAGGCTCGGGGACGCGCGAATCAGCTCCACGGACCTCCTCAAGGGCCTCGACTCCGAT
AGGAAGGCCGCACGCCATAGGATCAGGACGCTCGCCCGGCTCAGGCAGGCGCTC--------------------------
-GTCGTGGCCGTCCTCGGCGCGTGCGTCGGCGTGCACGTGCGGGCGACGTTTGCGATGTTCCCGATGATATCGCCAGCGT
GGCTGGGGCTCTTCAGCTACGAAGCACCGATACGTGTAAAACCTGTGTATCGCCGTCCTGTACGTCACCGATACGGCGAT
ACACAAGATACGGCAGCGATACGGGTATCCGTGGGGTATCGTGATTTTCGATTTAAAACAAAAGAAAAAAATGCCGATAC
GCCGCCGGGACGGCGCCGACACGCCGGCGACACGGGAAGCCCAGTAGAGGCCCACTCCGCCGCTCGCAAAGTCGTAACCC
TAAACAGCCAGCACTCTCTCTCTCAGTTTGCTATGCGGCAGATTGGATCGAGGATTCAGGTGCGACCGCACGAGTGCGCC
GCCAATGCCTGGATTCCATCACGGCCATCTGGACTCGCCCCGCCGCCGCTTGGAGTGTCCGCCGCTGCCGCCTGTTGGCC
GTCACCAGCAAGGTATCCCCCGGCCCCTTCCCAATCTCTGCTCTCTTCTCTGTTCCGGTGGTGCCTGGTCCTCCCGCTCT
TGCTGGCTTGCGGCGTGCTGATTATGTGTGTGCTTGCTGCTGAGTGCGTGCGTGGTGTGCGCTTGCTGCGGCGTGCGTGC
GTTCGTACTTGGTGTGTCCATCTGCGTACTTGTTCTGCAATTGTGTGCGTCCTTGCTAGCTACTGATGGGCACTGGGTGT
TGGCCTCTGTTGTATCAACTATGATTTGCTGCTGACCTGCTGACGTGCTAGGGGGTGAAATACTGACAATATCATCTGCA
GGCCAATCTTCGGTTGAGAGGCTGGGAAGCATCAGTCATGTATTATTGGGTAAGCAAGCTACAAGCCAACGTCTTTACTG
TTTTAGGCTTTTAATGCACAAGTGTTATGTTTAGTTCAAGTTCTAATATCAGCATATGATGTATTTTGCAAGCAGCATGG
GGATTCAGTAAATTGATGATCATTCAGTCATGAAGACGACTTGATGAAAAGAGGCATGAATGCAACTTATGGGGCAGTAC
TTTGATCTATTATTCTTTGTCTTTATAGCATGCAATTTACTAATTATTTATATATACTTGCCGTATCACCGTATTGCTGT
TTTTGAAAATTATCGTATCCCGTATCGCCGTATCCGTGTCTCCGTATCGGTGCTACGTAGCTCTTCAGCGGCCGAGGGGC
GCGTCGAGCGCTGGTGCAGCTGGAGGCCGCGGCAAAGGGCACCTACATCCTCAACCGGGACATGGACACCATCAGCCGAC
TGGTGGAGTGGGTGCGGGACGAGGGGAAATACATGATGGTGCTGTTGCAGCTCTGCGTAGCGGAGGAGGCCAACACCAGA
GCCGGCGTCGGGAAGGG---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----S--S-------------------------SSSS----------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---------------------------------S--------S------------S----S---S---
---S-----------------------------------------S---------S--S---SS--S-------SSSS-S
--S----S------------------------------------S-------S---SSSS-----------S--S-SSSS
SSSS----------------------S------------SSSSSSSSSSSS-----------S----SSSS--SSSSSSS
S--------S-------------------S--------------------------------------------------
---------------------S-------S-S-S--S----------S-----SSSS---------------------SS
SSSS------------S---------------SSSSSSS-SS---------------------S----------------
S------------SSSS--S---------------------------S---------------------------SSS-S
--SSS--SS---SSSS----------------S----S-S-------SSS------------------------------
---------------------------S-----S-----------------------SSSS--S----------------
-------S-----------------------S--------------------------S--S----S---SS--------
----------------------------S-----S--------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
------------------------------------------S--------S--------------------------S-
--------------------------------SSSSS-SS-SSSSSSSSSSSSSSSSS-----------S----------
---------------------------------------SS--------------S----------------S-S-----
-----------------------------------------SS---S------S-S---S-S-SSSSS-S--SS------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-----S--------------------------------SS-SSSSSSSSSS---------------S-------------
S----------------------S---SS-S------S--------------SSS-SS--SS-SSSSSSSSSSSS--S--
-------S-------------S-S-------------SS------------------SSSSSSS----------------
SS----------------------SSSSSS-------S--------S-----S----SSSS-SSSSSSSSS--S------
-S------------------------S-SSSS------------S---S-----S-S-------S--S-SSS-SSSSSSS
SS--S-S-S--------S-S--S-----------S--SS------------S----------------S-----------
--S-----S----------------------------S------SSSSSS------------------------------
--------------------------------------------------S-----------------------------
----------------------S----------S----------------------------------------------
----------------------------------S-----------------------------S---------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
-------------------------------------------------------S-------------------S----
--------------------------------------------------------------------------------
---------S-----------------------------------------------------------------S----
--S-----------------------------------------------------------------------------
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--------------------------------------------------------------------------S-S---
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-----S--------------------------------S-----------------------------------------
-----------------------------------------------------------------------------S--
-S--S----------------------------------------S--S-----------SSS----------------S
--------------------S------SS------------------------S--------------------SS-SS-
SSS------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_609
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-----------------------------TAGCCTTGTGTCGTAGCTGC-------------------------------
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>reverse_2059
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----------------------------------------------------------GAGATCAGAGATGGCCGTCG--
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>forward_1665
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---------------------------------------------GTCCTAGCCATCCTGCATCG---------------
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>reverse_2625
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----------------------------------------------------------------TCTCCTCTCCGCCTAC
TACG----------------------------------------------------------------------------
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>forward_2232
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----------------------------------------------------TCGACCGTGCACATCTTTGA--------
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>reverse_5297
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----------------CGCCGTCCAGAGCTAATCAT--------------------------------------------
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------------------------
