>input_sequence_35069
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-------------------ATGGAGACCGGGATTGTGTGGCTGGTGCAGGCCATCCTCGGAACACTCCGAATCGACAAGC
TGGATGCGTGGATCCGCCAAGCCGGGCTTGCCGACGACATCGAGAGGCTCCGGTGCGAGATCGAGAGGGCCGAGGTGGCG
GTCAGCGCAGTGAGGGGGCGGGCGGCCGTGAACGAGCCGCTGGACCGGTCTCTCGCTCGCCTCAAGGACCTGCTCTACGA
AGCCGACGATGTGGTCGACGACCTCGACTACTGCAGGCTCCAGCAGCAGGTCCAAGGAGGTACGCGTAGCCCCTGTAGAT
CCATCATATGCGGTACAAAGAGAG---ATTTCATCACATGCCTCACACTAGTTTGCACTTGGATCATATGCGCATTTACC
ATGTCAATTTGATAAGAGCAGCATCCCGATAGTGTATCGGAGGAGACCAAAATGCCACCGGGCAAAACAGCAGCTGTTCT
GCTCTTATTTCTACCCTTCAGACTTCCCTAAATAGGCCCCATATATAACTCTATCCCTAAAGAAAATGGCAGGTCACATG
ATCATCTTTGATTCTTTTTCACTAATGCACTCAATAGCAGTGAAACAAGTAGGTCCAAATAGCACTGAATAGTCAA----
------TACCATGTGGGGAAA-----AAAAGAGGAACTGATAGAGCACTGGACAC--TGTCGTTAAGTGTTCACATCCGT
G-TTCTTTCTTTTCTTTGGGTTTGGATCAGGCGAACTGCCTTGCTCATCAAATAGGCACATAACAAATGGGCAAAGAAAA
AATGGGCAATATTATTAATTATTACCACAGAAAAGCCTGGTCAAATTATTGTTCTACCTGGTCAAA-TTTCATTGGAAAA
GTGGGCATATGATATGATCGAAGTCAAAACTTTTGAGAAGCATGTGATCAAATCCCTAGTCGCTCTCCCTACCGAAATGT
GGCACGACACCCTCACCAAAGATTTATTTTT-CTTCC-------------------------------------------
---------------------------------------------------------------------------AAAGT
TTGATGGGGTCATCTTGTACAGATGAATAGTGATTAGTAGG-AGTACTAATATAGTGAAGGATTTCGTAATTTAATTGGG
GTCAACTTGTTAGCCACCGGCCTGCTCCCACTTTCAGTCCAGCGGACTCACAAACACACACGAAGTGAATTTGTGATTGT
CCTCCACACCGAGTTAACTGAACAAGAGAGAACAGAGGAGAGAAAACAGAGTAACCTGTACACAGTAGTTTTTCAGGCAA
TGAATGCCAAATTTCCGTTCTACTTCTCCAGCAACAAATGCTAGTTTATTTATACATGGACACAACCGACTCTTAACAGA
ACTCTCTACAATCTTGTTGAGCTGGCATACATCGTTCTGGACCAAGTTCAGCACAACAACCATGTAATACACTCATGACA
GTTCCAACAAATGAAACCTGTCACAAACCAACTTGTTCAGTTGCGCAACACATAGTACTCCCTCAGTCCGGAAATACTTG
TCGCATAAATGGATAGAAATTGATGCATCTAGAACTAAAATACGTCTAGATGCATCCATTTTTCCGACAAGTATTTCCGG
ACTGAGGTAGTATATCAAAGACCAGAACAAGGTTTATACTAACACAACTGATCCCAGTACTTAAACACAGCTCAAGGGCC
CTGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGAGAGTTTTTGTCAAGCAT--GCATGCTAATTCACCTCTTTTTTTTCTGCAGTTGCATGCGGTGATCCTGGC
AGAATGCATGAAGCAGAGCGAGTAGATGAGAGATCGAGGGGAGGTGATGCTAATATACTTGGTACCAGTGGTGGCAAGAA
ATGGTCCAAAGCATGGTGTGATTTTGATATCACAGAGGAAAACAACGGAAAGCCTGTGAAAGCAAAGTTTAAACACTGTC
AAAAAGCAGTTAAATGCGGAAGTGACAGAGGGACGTCAATCTGGAACAACCATGTCAAGAGTCAGGGTTGTAAGAACTCC
AGAGCAACTGACCAGCCGCCAAACTCTTCATGGTACATATTTTAA-----------------------------------
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>chr2B_1_TraesCS2B01G487600
AACTTGGGAGAACTGAAGTATGGAAGAGT--AGAACAAATGAGAAGTGTATGTGTTATCTGCATAATGTACAATGCAAAT
GATAGAATAATCATGAATGTCATGCAAAATTGAAGTATGGAAGAATTTAGAACAAAGAAGAAGTGTCTTCGTTTTCAGCT
TTGCTAAGCACAAGTGTGGAATCTTTCGGATTAGTAACATGTGGCAGAATCCAATATGGTGGAGAGAGTATCCAACGGTC
AAGACTACTCGGATTTGCCACCT-CTGAACCGTTAGATCGGCTCCATCCAATAACCGATATTCGAAGTTAATCATACACA
ATATCATGGTAAGATATAGGAATATAG------ATATAGATATTTTCATTCCTTCTGCGCGCATCTTGTGTTACCTG---
AAAAAAATTATGCCCGTACCTCTGGCGGTCTCTCCTTCTGCCCACCCCTCCTCTCCCCGATTGAGGCGGCGCCCTCCTTG
CCTTCCCTCCAGGTGCTCCACATCTCTCAAGCGGCGGCGCCTCTCCTCTTCCCATCAGGGTCTTTCGTGCTCGCCGCTGC
CTCACATCGGAGAAGCTCCTTGGTCTCTGGACGTGGAGGTGGAG-------CTAAGGGCACCTTGATCTCACGACCTGTC
CTCCGAATGAATTGTTTTTCTTCGGACTTGCATATATACAGTTATCTGGCCCCACAAATAAACCGATATATGATTAGATA
TACATAACGTTACAGACATATACAGAGTCTTATACAACACAAAAAGACCATATACATAAACATATGTGCGAATCTTGGCG
CAGATCAACGGCCCATAAA---GTGCGTGCC-----------------------------------TTGTTTCGTCCGAA
TTCAATCGAAGGAAAAAAAAAAACTTCGCGCTGAAGTTCATCTCACTG--AAAAAAAAGAGAAGTCGCCGCTGCATTGTA
TATTGCTCTCCTCGGCTCGACTGCTCTGTTCTTCTTCCCCATCCCCGCACTTTCCTCCACCGACCATCCTCCGGCGAACA
ACCGCTTCTGCCGGATCTGATGGAGACCGGGATTGTGTGGCTGGTGCAGGCCATCCTCGGAACACTCCGAATCGACAAGC
TGGATGCGTGGATCCGCCAAGCCGGGCTTGCCGACGACATCGAGAGGCTCCGGTGCGAGATCGAGAGGGCCGAGGTGGCG
GTCAGCGCAGTGAGGGGGCGGGCGGCCGTGAACGAGCCGCTGGACCGGTCTCTCGCTCGCCTCAAGGACCTGCTCTACGA
AGCCGACGATGTGGTCGACGACCTCGACTACTGCAGGCTCCAGCAGCAGGTCCAAGGAGGTACGCGTAGCCCCTGTAGAT
CCATCATATGCGGTACAAAGAGAG---ATTTCATCACATGCCTCACACTAGTTTGCACTTGGATCATATGCGCATTTACC
ATGTCAATTTGATAAGAGCAGCATCCCGATAGTGTATCGGAGGAGACCAAAATGCCACCGGGCAAAACAGCAGCTGTTCT
GCTCTTATTTCTACCCTTCAGACTTCCCTAAATAGGCCCCATATATAACTCTATCCCTAAAGAAAATGGCAGGTCACATG
ATCATCTTTGATTCTTTTTCACTAATGCACTCAATAGCAGTGAAACAAGTAGGTCCAAATAGCACTGAATAGTCAA----
------TACCATGTGGGGAAA-----AAAAGAGGAACTGATAGAGCACTGGACAC--TGTCGTTAAGTGTTCACATCCGT
G-TTCTTTCTTTTCTTTGGGTTTGGATCAGGCGAACTGCCTTGCTCATCAAATAGGCACATAACAAATGGGCAAAGAAAA
AATGGGCAATATTATTAATTATTACCACAGAAAAGCCTGGTCAAATTATTGTTCTACCTGGTCAAA-TTTCATTGGAAAA
GTGGGCATATGATATGATCGAAGTCAAAACTTTTGAGAAGCATGTGATCAAATCCCTAGTCGCTCTCCCTACCGAAATGT
GGCACGACACCCTCACCAAAGATTTATTTTT-CTTCC-------------------------------------------
---------------------------------------------------------------------------AAAGT
TTGATGGGGTCATCTTGTACAGATGAATAGTGATTAGTAGG-AGTACTAATATAGTGAAGGATTTCGTAATTTAATTGGG
GTCAACTTGTTAGCCACCGGCCTGCTCCCACTTTCAGTCCAGCGGACTCACAAACACACACGAAGTGAATTTGTGATTGT
CCTCCACACCGAGTTAACTGAACAAGAGAGAACAGAGGAGAGAAAACAGAGTAACCTGTACACAGTAGTTTTTCAGGCAA
TGAATGCCAAATTTCCGTTCTACTTCTCCAGCAACAAATGCTAGTTTATTTATACATGGACACAACCGACTCTTAACAGA
ACTCTCTACAATCTTGTTGAGCTGGCATACATCGTTCTGGACCAAGTTCAGCACAACAACCATGTAATACACTCATGACA
GTTCCAACAAATGAAACCTGTCACAAACCAACTTGTTCAGTTGCGCAACACATAGTACTCCCTCAGTCCGGAAATACTTG
TCGCATAAATGGATAGAAATTGATGCATCTAGAACTAAAATACGTCTAGATGCATCCATTTTTCCGACAAGTATTTCCGG
ACTGAGGTAGTATATCAAAGACCAGAACAAGGTTTATACTAACACAACTGATCCCAGTACTTAAACACAGCTCAAGGGCC
CTGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGAGAGTTTTTGTCAAGCAT--GCATGCTAATTCACCTCTTTTTTTTCTGCAGTTGCATGCGGTGATCCTGGC
AGAATGCATGAAGCAGAGCGAGTAGATGAGAGATCGAGGGGAGGTGATGCTAATATACTTGGTACCAGTGGTGGCAAGAA
ATGGTCCAAAGCATGGTGTGATTTTGATATCACAGAGGAAAACAACGGAAAGCCTGTGAAAGCAAAGTTTAAACACTGTC
AAAAAGCAGTTAAATGCGGAAGTGACAGAGGGACGTCAATCTGGAACAACCATGTCAAGAGTCAGGGTTGTAAGAACTCC
AGAGCAACTGACCAGCCGCCAAACTCTTCATGGTACATATTTTAAAGAGT------------------------------
---AACATATGTTTTCCTCTGGATCCTAAAAATTTACATCCGCGCACCTGTTTTCATTTTCAACGTTTTTTT-AACTTAT
ATAATCAACCCATTACTGTGATTCTAGTAGTTGTAAAGTATTTTATCATTGGGGTGGATGTCCACCCGATAATCAAAATG
TATTTTCTCTATAAAAGAGTTGT-AAAAATAAAAATAAGAAAACATTTGCATGTATACATTGTGCTCTGAGAGGTAATAG
GTAACCTTGGACAATTTTATGCTAAATGTGGCCATATACGTCCTTCATAAAAAAGAT------GTTCTGCTTCAACCATG
AAGATTGGAGAGTGTGTGTGTTCAGAGTGCACAAAATTTCTCTTT-GTACAGAATGCATACGGGCATATTTGTATACCAA
ATTATACAA---TACATGTTATAGCATGATGTTTGTCTGGACAGTATTTCACTTTTTTCCACAGCATTTTGAATTGAAAA
AATATTGCATTTCGGATAGCACTTGGAGAAAAAGTTGCATTTCTAATAGCCAATCTACAATGTCTCTTTTTATTGCAGCA
CCTGTGATGCTACTGCAAACGCTGCACCTGTTGTAATTGGTGATTTGTTCAGCAGAAAAAAGGAGAAGAGACGAGGAGTT
GGCACAAACCACCGCAGCTAACATAAACCTTTGGCACAAGGCAGATTGTTTCAATAGGATACAGGAAATAACTCACCAGT
TACAAGACATCCTAGAGGATGTGAGTGGTGTTCTCAAGATGCATGGATCGGCCTCTATTACAAGCTCAAATGATGTGTGC
CCAACAACATCAAGTCTTAATCAGCAAAAAGTGTATGGGAGAGATTCAGAGATGAGCACCATCATAAAGATGATTACATC
TGATAAACATGAAGGTGTGTCTGTACTGCCTATTGTAGGCATTGGAGGAGTTGGCAAGACAACTCTCACACAACTCGTAT
ATAATGATCCAACAGTAAAAGAGCAGTTTGAACGGAAATGGCTATGGGTG
>chr2D_1
AAGTTGGGAGAACTGAAGTATGGAAGAGTCTAGAACAAATGAGAAGTGTATGTGTTATCTGCATAATGTACAACGCAAAT
GATAGAATAATCATGAATGA-ATGAAGAATTGTAGTATGGAAGAATTTAGAACAAAGAAGAAGTGTCTTCGTTTTCAGAT
TTGCTAAGCACAAGTGTGGAATCTTCCGAATTAGTAACATGTGGCAGAATTCAATATGGTGGAGAGAATATCCAACGGTC
AAGACTACTCGTATTTGCCACCCCCCCAACCATTGGATCGGCTCCATCCAACAACCGATATTCAAAGTTAATCATACACT
ATATCATGAGGAGATATAGGAATATAG------ATATAAATATTTTCATTCCTTCTGCGTGCATCTTGTGTTACCTG---
AAAAAAATTATGCCCGT-CCTCTATCGGTCTCTCCTTCTGCCCACCCCTCCTCTCTCCGATTGAGGCGGCACCCTCCTTG
CCTTCCCT-CAGGTGCTCCACATCTCTCAAGCGGCGGCACCTCTCTTCTTCCCATCTGGGTCTATCGTACTCGCCGCTAC
CTCACATCGGAGAAGCTCCTTGGTCTCTGGACGTGGAGATGGAGCTAAGGCCTAAGGGCACCTTGATCTCACGACCTGTC
CTGTGAATGAATTGTTTTTCTTCGGACTTGTATATGT-CAGTTATCTGGCCCCACAAATAAACCGATATACGATTAGAT-
TACATAACGTTACAGACACATACAAAGTCTTATACAACACAAAAAGACCATATACATAGACATATGTGCGAATCTTGGCG
CAGATCAACGGCCCATAAA---GTGCGTGCCCGCACTTGCGTGC-----ATCCTCTCCCTCGTCATTTGTTTCGTCCGAA
TTCAAGCGAAGGAAAAAAAAA--CTTCGCGCTGAAGTTCATCTCACCG--AAAGAAAGGGGAAGTCGCCGCTGCATTGTA
TATTGCTGTCCACGGCTTGACTG-TCTGATCTTCATCCCCATCCCTGCACTTTCCTCCACCGACCATCCTCCGGCGAACA
ACCGCTTCTGCCGGATCTGATGGAGGCCGCGATTGTGTGGCTGGCGCAGGCCATCCTCGGAACACTCCGAATCGACAAGC
TGGATGCGTGGATCCGCCAAGCCGGGCTTGCCGACGACATCGAGAGGCTCAGGCGCGAGGTCGAGAGGGTCGAGGTGGCG
GTCAGCGCCGTGAGGGGGCGGGCGGCCGCGAACGAGCCGCTGGCCCGGTCTCTCGCTCGCCTCAAGGACCTGCTCTACGA
AGCCGACGAAGTGGTCGACGACCTCGACTACTGCAGGCTCCAGCAGCAGGTCCAAGGAGGTACGCGTAACTCCTGTAGGT
CCATCATATGCGGTACGAAGAGGG---ATTTCATCACATGCCTCACACTAGTTTGCACTTGGATCATATGCGCATTTACC
ATGTCAATTTGATAACAGCAGCATCCCCATAGTGTATCGGAGGAGACCAAAATGCCACTGGGCAAAACAGCAGCTGTTCT
GCTCTTTTTTCTACCCTTCAGTCTTCTCTAAATAGGCCCCGG--ATAACTCTGTCCCTAGAGAAAATGGCAGCTCACTAT
G-------------------------GCACTCAATAGCAGTGAAACAAGTAGGCCCAAATAGCACTCAATAGTCAA----
------TACTCAATACTACCATGTGGAAAAAAGGAACTGAGAGAGCACTGGACAATGTGTCGTTAAGTGTTCGCATCCGC
GTTTCTTTCTTTAGTTCGGATTTGGATCAGGCGAATTGCCTTGCTCATCAAATAGGCACATAACAAACGGGCAAAGAAAA
AATGGGCAATATTATTAATTATTGCCACAGAAAAGGCTGGTCAAATTATTGTTCTACCTGGTCAAAATTTCATTGGA-AA
GTGTGCATATGATATGATCAAAGTCAAAACTTTTGAGAGGCATGTGATCAAATCTCTAGTCGCTCTCCCTACCAAAATGT
GGCACGACGCCGTCACCAAAGATTTATTTTTTCTTCCCGAGTCGTGAAAATGTGTTCTCCTAATCTTCTTCACATTCTTC
TTCCATGCCGGTGACCACCCCCAAACACAACCAGTACTAGAAAGAGGCGCGTGTGTGCAGGAACGAAGGCAGAA-AAAGT
TTGATGGGGTCATCTTGTACAGATGAATAGTGATT-------AGTACTAATATAGTGAAGGATTTCGTAATTTGATTGGG
GTCAACTTGTTAGCCGCCGGCCTGCTCCCTCTTTCAGTCCAGCGGACTCACGAGCACACCCGAAGTGAATTTGTGTTTGT
CCTCCACACCGAGTTAACTGAACAAGAGACAGCAGAGGAGAGAAAACAGAGTAACCTGTACACGGTAGTTTTTCAGGCAA
CGAATGCCAAATTTCCATTCTACTTCTCCAGCAACAAATGCTGGTTTATTTATACATGGACACAACCGACTCTTAACAGA
ACTCTCTACAATCTTGTTGAGCTGGCATACATCGGTCTGGACCAAGTCCAGCACACCACCCATGTAATACACTCATGACA
GTTCCAACAAATGAAACCTGTCACAAAGCAACTTGTTCACTTGCGCAACACATAGTATATCAC-----------------
--------------------------------------------------------------------------------
-----------------AAGACCAGAACAAGGTTTATACTAACACAACTGATCCCAGTACTTAAACACAGCTCAAGGGCC
CTGTGTCTGTGCACGTGTGTGTATGTGGGTGGGG----------------------------------------------
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--------------TTTTGTCAAGCAT--GCATGCTAATTCACCT-TTTTTTTTCTGCAGTTGCATGGGGCGATCCTGGC
AGAATGCATGAAGCAGAGCGAGTAGATGAGAGATCGAGGGGAGGTGATGCTAATATACTTGGTACCAGTGGTGGCAAGAA
ATGGTCCAAAGCATGGTGTGATTTTGATATCACAGAGGAAAACAACGGAAAGCCTGTGAAAGCAAAGTTTAAACACTGTC
AAAATGCAGTTAAGTGCGGAAGCGACAGAGGGACGTCAATCTTGAACAACCATGTCAAGAGTGAGGGTTGTAAGAACCCC
AGAGGAACTGACCAGCCGCCAAACTCTTCATGGTACACATTTTAAAGAGT------------------------------
---AACATATGTTTTCCTCTGGATCCTAAAAATTTACATCCACGCACCTGTTTTCATTTTCAATGTTTTTTT-AACTTAT
ATAATCAACCCACTATTGTGATTCTAGTAGTTGTAAAGTATTTTATCATTGGGGTGGATGCCCACCCGATGTTCAAAATG
TATTTTCTCTATAAAAGAGTTGT-AAAA-TAAAAATAAGAAAATATTTGCATGTATACATTGTGCTCTGATAGGTAACAG
GTAACCTTGGAAAATTTTATGCTAAATGTGGCTATATACGTCCTTCATAAAAAAGACAAATCAGTTCAGCTTCAACCATG
AAGATTGGAGAGTGTATGTGTTCAGAGTGCACAAAATTTCTCTTT-GTACAGAATGCATACGGGCATATTTGTATACCAA
ATTATACAAGAATACATGTTATAGCATGATGTTTGTCTGGACAATATTTCACTTTTTTCCACAGCATTTTGAGTTGAAAA
AATATTGCATTTCGGATAGCACTTGGAGAAAATGTTGCATTTCTAATAGCCAATCTACAATGTCTCTTTTTATTGCAGCA
TCTGTGATGCTACTGCAAATGCTGCACCTGTTGTAATTGGTGATTTGTTCAGCAGAAAAA-GGAGAAGAGATGAGGAGTT
GGCACAAACCACCGCAGCTAACATTAACCTTTGGCACAAGGCAGATTGTTTCAATAGGATACAGGAAATAACTCAGCAGT
TACAAGACATCCTAGAGGATGTGAGTGGTGTTCTCAAGATGCATGGATCGGCCTCTATTACAAGCTCAAATGATGTGTGC
CCAACAACATCAAGTCTTAATCAGCAAAAAGTGTATGGGAGAG-TTCAGAGATGAGCACCATCATAAAGATGATTACATC
TGATAAACATGAAGGTGTGTCTGTACTGCCTATTGTAGGCATTGGAGGAGTTGGCAAGACAACTCTCACACAACTCGTAT
ATAATGATCCAACAGTAAAAGAGCAGTTTGAACGGAAATGGCTATGGGTG
>chr2A_1
AAGTTGGGAGAACTGAAGTATGGAAGAGTCTAGAACAAATGAGTAGTGTATGTGCTATCTGCATAATGTACAACGCAAAT
GATAGAATAATCATGAATGTCATGTAGAATTGAAGTATGGAAGAATTTAGAACAAAGAAGAAGTGTCTTTGTTTTCAGGT
TTGCTAAGCACAAGTGTGGAATCTTCCGAATTAGTAACATGTGGCAGAATCCAATATGATGGAGAGAATATCCAACGGTC
AAGACTACTCGTATTTGCCACCT-CCCAATCATTGGATCGGCTCCATCCAACAACCAATATTCAAAGTTAATCGTACACT
ATATCATGATGAGATATATGAATATATATATATATATAAATATTTTCATTCCTTCTGTGTGCATCTTGTGTTATCTGGAA
AAAAAAATTATGCCCGT-CCTCTATCGGTCTCTCCTTTTGCGCACCCCTCCTCTCCCCGATTGAGGCGGCGCCCTCCTTG
CCTTCTCTCTAGGTGCTCCATATCTCTCAAGCGGTGGCACCTCCCTTCTTCTCATCTGGGTCTTTCATGGTTGTCGTTGC
CTCACATCGGAGAAGCTCCCTGGTCTTTGGACGTGGAGATGGAG-------CTAAGGGCACCTCGATATCACGACCTGTG
CTGCGAATGAATCGTTTTTCTTCGGACTTGTATACGTACAGTTATCTGACCCCGCAAATAAACCGATATAAGATTAGATA
TACATAACATTATAGACATACACAAAGTCTTATACAACACAAAAAGACCATATACATAAACATATGTGTGAATCTTGGAG
CAGATCAACGGCCCATAAAAGCGTGTGCCCCCGCACTTGTGTGCTGTAAATCCTGTACCTCCTCATTTGTTTTGTCCGAA
TTCAATCAAAGGAAAAAAGAA--CTTCGCGCTGAAGTTCATCTGACTGAAAAAGAAAGGGGAAGTCGCCGCTGCATTGTA
TATTGCTCTCCTCGGCCCGAGTGCTCTGTTCTTCTTCCCCGTCCCTGCACTTTCCTCCACTGACCATCCTCCGGCGAACA
ACCGCTTCTGCCGGATCTGATGGAGGCCGCGATTGGGTGGCTGGTGCAGGCCATCCTCGGAACACTCCGAATCGACAAGC
TGGATGCGTGGATCCGCCAAGCCGGGCTTGCTGACGACATCGAGAGGCTCCGGTGCGAGGTCGAGAGGGTCGGGGTGGCG
GTCAGCGCCGTGAGGGGGCGGGCGGCCGTGAACGAGCCGCTGGCCCAATCTCTCGCTCGCCTCAAGGACTTGCTCTACGA
AGCCGACGATGTGGTCGACGACCTCGACTACTGCAGGCTCCAGCAGCAGGTCCATGGAGGTACGCGTAACCCCTGTAGAT
CCATCATATGCGGTACAAATAGGGATTATTTCATCACATGCCTCACACTAGTTTGGACTTGGATCATATGCTCATTTACC
ATGTCAATTTGATAACAGCAGCATCCCCATAGTGTATCGGAGGAGACCAAA-TGCCACCGGGCAAAACAGCAGCTGTTCT
GCTCTTATGTCTA-CCTTCAGTCTTCTCTAAATAGGTCCCAG--ATAACTCTGTCCCTAGAGAAAATGGCAGCTCACTAT
G-------------------------GCACTCAATAGCAGTGAAACAAGTAGGCCCAAATAGCACTCAATAGTGATTAAT
CAATACTACCATGTGG-----------AAAAAGGAACTGAGAGAGCACTGGACAATGTGTCGTTAAGTGTTCACATCCGT
G-TTCTTTCTTTTCTTCAGGTTCGGATCAGCCGAACTGCCTTGCTCATCAAATAGGCACATAACAAATGGCCAAAGAAAA
AATGGGCAATATTATTAATTATTACCACAGAAAAGCCTGGCCAAATTATTGTTCTACCTGGTCAAAAATTCATTGGA-AA
AGTGGGC----ATATGATCAAAGTCAAAACTTTTGAGAGGCATGTGATCAAATCTCTAGTCGCTCTCCCTACCAAAATGT
GGCACGACGCCGTCACCAAAGATTTATTTTT-CTTCCAGAGTCGTGAAAATGTGTTCTCCTAATCTTCTTCACATTCGTC
TTCCATGCCGGTGACCAACCCCCAACACAAC---TACTAGAAAGAGGTGCGTGTGTGCAGGAACGAAGACAGAAGAAAGT
TTGATGTGGTCATATTGTACAGATGAATAGTGATTACTGATTAGTACTAATATAGTGAAGGATTCCCTAATTTAATTGGC
CT------------------------------------------------------------------------------
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--------------------------------------------CAATTGATCCCAGTACTTAAACACAGCTT--GGGCC
CTGTGTTTGTGCAACTGTGTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATGGGCATGCTAATTCACCT-TTTTTT--CTGCAGTTGCATGGGGCGATCCTGGC
AGAATGCATGAAGCAGAACGAGTAGATGAGATATCGAGGGGAGGTGATGCTAATATACCTAGTAGCAGTGGTGGTAATAA
TTGGTCCAAATCAAGGGGTGATTATGATATCACAGAAGAAAACGACGGAAAACCTGTGAAAGCAAAATTTAAACACTGTC
AAAAAGCAGTTAAGTGCGGAAGCGACAGAGGGACGTCAATCTTGAACAACCATGTCAAGAGTGAGGGTTGTATGAACCCC
AGAGCAACTGACCAGCCGCCAAACTCTTCAAGGTACATATTTTAAAGAGTTTTTTTTGCGAATTTTTTCTATTTTAAAGA
GTTAACATATGTTTTCCTCTGGATCCTAAAAATTTACATCCGCGCACCTGTTTCCATTTTCAATTTTGTTTACAACTTAT
ATAATCCACCCACTATTGTGATTCTAGTAGTTGT-AAGTATTTTATCATTGGGGTGGATGTCCACCCGATATTCAAAATG
TATTTTCTCTATACAAGAGTTGTAAAAA-TAAAAATAAGAAAATATTTGCATGTATACATTGTGCTCTGATAGGTAACAG
GTAACCTTGTAAAATTTTATGCTAAATGTGGCTATATACGTCCTTCATAAAAAAGACAAATCAGTTCAGCTTCAACCATG
AAGATTGAAGAGTGTATGTGTTCAGAGTGCACAAAATTTCTCTTTTGTACAGAATGCATACGGGCATATTTGTATACCAA
ATTATACAAGAATACATGTTATAGCATGATGGTTGTCTGGACAATATTTCAC-TTTTTCCACAGCATTTTGAATTGAAAA
AATATTGCATTTCGGATAGCACTTGGAGAAAAAGTTGCATTTCTAATAGCCAATCTACAATGTCTTTTTTTATTGCAGCA
CCTGTGATGCTACGGCAAATGCTGCACCTGTTGTAATTGGTGATTTGTTCAGCAGAAAAA-GGAGAAGAGACGAGGAGTT
GGCACAAACCACTGCAGCTAACATAAACCTTTGGCACAAGGCAGATTGTTTCAATAGGATACAGGAAATAACTCGGCAGT
TACAAGACATCCTAGAGGATGTGAGTGGTGTTCTCAAGATGCATGGATCGGCCTCTATTACAAGCTCAAATGATGTGTGC
CCAACAACATCAAGTCTTAATCAGCAAAAAGTGTATGGGAGAGATTCAGAGATGAGCACCATCATAAACATGATTACATC
TGATAAACATGAAGGTGTGTCTGTACTGCCTATTGTAGGCATTGGAGGAGTTGGCAAGACAACTCTCACACAACTCGTAT
ATAATGATCCAACAGTAAAAGAGCAGTTTGAACGGAAATGGCTATGGGTG
>SNPs
--S----------------------------------------------------------------------S------
------------------------S-S---------------------------------------------------S-
-------------------------S--S--------------------------------------S------------
-----------S-------------SS----S--S----------------S-----------S---------------S
--------S-S---------------------------S--------------------S--------------------
-----------------S-----SS-------------------------------------------------------
--------------------------------------S------S----------S-----------------------
--------------------------------------S-----------------------------------------
--S---------------------------S----S----------------------------------S---------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
---------------------SS------------------------------S---S-S--------------------
---------------------------------------------S----------------------------------
-------------------------S---S--------------------------------------------------
-----------------------------------------------------------S---------S----------
--------S----------------------------------S------------------------------------
--------------------------------------------------------------------S-----------
----------------------S---------------------------------------------------------
---------------S-----------S----------------------------------------------------
---------------------S----S--------------SSS--------S------S------------S----SSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S------------S-------------
----------------SSSS----------S---------S-------------S-------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------------------S--
-------------------S------------------S---------------S------------------S------
--------S--S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-SSS---------------------------------------
---------------S-------------S---------------------S-S-----S---------------S----
-----------------------------S-S-------------------------------S----------------
S---------------S-------------------------S-------------------------------------
----------------------------------S------------S-------S--S---------------------
---------------------------S-----------S-----------------SSS-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
-------SSSSSSSSSSSSSSSSS--------------------------------------------------------
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-------SSSSSSS-------------------------------S---------------------S--S---------
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-------------S--------S-------------------S-------------------S--------------S--
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------S--S-------------------------------------------------------S--------
----------------------------S--------------S--------------------------S------S--
-----------S--------------------S-----------------------S----------S------------
---------------S----------------------------------------------------------------
-------------------------------------------S------------------------------------
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-------------------S----------------------------------------S-------------------
---------------------------------------------------------------------------S----
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>forward_267
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-------ACTCGGATTTGCCACCTCTG-----------------------------------------------------
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>reverse_1456
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---------------GAGCAGCATCCCGATAGTGT---------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>forward_1349
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GTCCAAGGAGGTACGCGTAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_3374
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ATGCGGAAGTGACAGAGGGA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>forward_2009
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TACCGAAATGT
GGCACGACA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_3438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TCC
AGAGCAACTGACCAGC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>forward_2300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AGCGGACTCACAAACACACA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_4100
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CGCTGCACCTGTTGTAATTGG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
