>input_sequence_35044
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-----------------------------------------TTAGGTCTACCTTTTACAAGATTCCCTATTTATCGTGAG
AATGAAGCGCATGAGTAGAATGCCCACAAGGAAGGCCCATTCATGGTGGTGGGACAGTCATATTAGTCCCAAAAACAACA
AATGGCTAGCTGATAATCTAGAAGGTAATGACTCTATTCTTGTTTCTTCAATTGCTTATGTACCAGATACTTCTGTCACT
TGCTAGGAGTAGCTATCTTTAGCACCATGTCAATTTCCTTCTCTGATGTTTCATCCTGCAATCTATTTACACTTGCAACC
TTTTCTGAACAAACAGAGATGGATAAGCAAGTTAAAGAGATGCTGAAGCTCATTGAGGATGAAGGAGATTCTTTTGCAAA
GAAGGCTGAGATGTATTACCAAAGGCGGCCTTTGCTTGTCACCCATGTTGAAAATTTCTACCGCATGTATCGTGCTCTTG
CTGAGCGTTATGACAATGTGACTGGGGAACTACGAAAAAACATGCCATCATCTCTCAAATCACAGGGCTCAGGTATATCT
GAATCTGACTCTGAGGCACAGTCTACTCCCGCATCTCCTGAGTCTGAAAAGAAGACCTCAAAACAGAAGGGTAAAAAGGG
AAGCGATGGATCATCATCATCTTCTTCTTCTGATTCTGATTCCGAGGTTGATGAAGTGAACCAAGAGAATGGCAATGGGA
TTACTCATGCACTGAACGAACGAGTTATTGAGCTAGAAGATGAGCTCAAGGAAGCAATGGAGAAACTTGAGGCACTCGAG
GAAAAGAATATGCGGTGCCAATGTGAAAACCTTGAAGAGAAGTTGCTAACTTCACAATCAGAAATCAACAGCCTTCAGAA
GGATCTTGAAGAAAAGGTCCGTTCATTGGAGAGTATCAAAGAAATTAGCAGTGAAAAGGAGGATTTGGAAGCTGCCGTTC
TGGAAAACAAGAACAAGTTCGAGGAATTAAAAGGAGAGATGGCCTTAGCAGCTAAGCATCATGAGGCCCAACTTTCATAT
CGTGACCTTGAAATTGAGAAATGCAAGCGGGAGCTTGAGGAAGTATCTGAGAGGTATACCTATGGTAAGTCTACTCTTGA
GACTGAAATCGGAGAGCTCCAAGAAGTGGTCAAGAACTTGGAAGGGAACTTGGCCAAACTGTCGGAAGAGAAGTTGCAGC
TTGAGGCACAGGTTATGGACCTTGAACAAACATCTCACAGCCTAGATGATTCATCTGCTGAAATTAAGAAGCTACAGAAG
GTAATCAAGGATCTGCAAGCAAGACTGGAAAATGATTCAAATGAGAAGAGAGTGCTCGAGGAACGTGCTATCGAGTTTGA
GCAAGTTCATAGGGAGTTGGAGGATTCGAGGGCTGAAACAGTGGAGCTACAAACTAGAATTGAGAAACTCAAAGCTGATC
TGGAAGGAGCACTTCAAGAGAAATTGATGTTGGAGGGCTGTGTCAAGGATCTGGAACATGCCATTGCTAGTAAGTTGGAG
AAATCCTCTCTTGAGAAGTCCTCTCTCGATGCTGAGATCCTACAACTGTCAGAAGCTAATGCTTCTCTTGAAGACAAGTT
GTCATCCACAGAGGCGCAGCTTAAGCAACTTCATGCCGAAAAGGCAGAAGCATCTGCTGAGAGTGAGAAGCTGATCTCTG
GATTGAAGCAAGATATTGCCAATCTTAAGACAGAGCTCGAGTTAGTGTCCTCACAGAAAGCTGCAGTTGATAATAAGGTG
TCTGGTTTGCTGAGTGATCTCACAACTTGTGATGAAAAGATGAAGGAGATGGATAGCCACTTGCATCAGCTGCACCTGGA
GCATGTGCAAGTGATTGCAGAGGCAGATGCTGCACGGAAGTCCGTGGCAGAACTGCGTGCACGGGTGCGTGAGCTCGAGG
AAGAGGTTGAGAAACAGAAGCTCATGGCCTTCGACAGCGCAGAGGGGAAGCGGGAGGCGATCAGGCAGCTGTGCTTCTCG
CTCGAGCACTACCGCGACGGGTATCAGCAGCTCCGGCAAGTTCTTCAGGGCCACAAGAGGCCGATGGTGATGGCAACGTG
ATCAGCCAGCCAGCAGCTTGCTGGATCCTCTTCTCTCTGGATGCCTAAAGTCAGTATGTCAATGTAATGTAAACATCCCT
TTCCCCTTCCCCTTTCTTCATGTAGCTTCGGTCTACTCCTTAGTAGTCTTGGT-AAAGCTTGTGCTTTGTAGTTGCTTCA
GCTACTGGTACTGTCTATTGTGTGTGATGTAATATATTATGGACCATTATGGCATTCCTTTTCAAAATCAATCTGCCTGT
TGCTGC--------------------------------------------------------------------------
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>chr3D_1_TraesCS3D01G096700
TATTATACAATTTACTGAGATCCAAGATAGGTGTCTCTGTCCTGTCACGACTTGAAAAATGTACTAGTTGACAATACAAT
TTACTAGTTGAGTTGTCGTATGTTGATTCCTCTCCTCACCCCATGGCTGCATGTGTCCACCTAGGTGTAAGCCAGGCCAT
GTTTCGTGGTTGACAGACAAATGTTATTTTGTACTATTAAACTTGGCCGGCCTCAATTATTGGTTGAATAGAAGTTGACT
ACAGCTCAACTGCAATTTCAAATTTCACCTTAAACCCTGGCCTTTTGATCCGTGTGGGGTCAGGACAAATGTGACGTCCT
TGCCTGTGATTGAATTTATTCTGAGTTCACTGAATTATGC-TCTACTCTGACCTAACAAGGGGCAGGTAGCTGCCACATC
TTTTGCGCTGTGGTGTGCGATAAGCTGTGAACCAAGTCCAGCCATGCTTCTATGATGAATTAGTTGTCCAACTAACATTG
GTACCCACAATATTCAATCAATTTCGCTGTAATAGTTTTTCATCATTGGCTGATAATATCATGATTTACACATGAATAAT
GATAGGCTGCATCTTCTTGGTAGTTAATCAGTTTTCTGGTCCCTGCATTATGGAGGTTGCCTTGCATAGTCCTTTCCCTC
TTCCTCTTGAATAGAGTGAACCAGTACTTTTCTGTACATAGGCGGTGCAGACCTTCATACTTCATACCATTCATGGTTTT
TAATTTTATGCATTTTGGATATTTTCTTTCTTTCCATCTATTATTCTTATGGGTGTACTCAGGCCGTGCCTTCTTGTTTT
CTGTTGTCACAAATACTTGCAATGGTATTCTGGTAATCTAGCCATAAGCTAACCTTGCAAGCGTCTTTTTTGTTCCCCCC
CTAATTTCACCACATATTACGAGGAAAGTGTTTTTTTAATTGCAGTCTTGCAGATCACCCTTTAGCACAAGAGTCATCAA
CTTGTATGTTTCACATTCTCATTTTTGCCTCCATCTCATGATTAGGTCTACCTTTTACAAGATTCCCTATTTATCGTGAG
AATGAAGCGCATGAGTAGAATGCCCACAAGGAAGGCCCATTCATGGTGGTGGGACAGTCATATTAGTCCCAAAAACAACA
AATGGCTAGCTGATAATCTAGAAGGTAATGACTCTATTCTTGTTTCTTCAATTGCTTATGTACCAGATACTTCTGTCACT
TGCTAGGAGTAGCTATCTTTAGCACCATGTCAATTTCCTTCTCTGATGTTTCATCCTGCAATCTATTTACACTTGCAACC
TTTTCTGAACAAACAGAGATGGATAAGCAAGTTAAAGAGATGCTGAAGCTCATTGAGGATGAAGGAGATTCTTTTGCAAA
GAAGGCTGAGATGTATTACCAAAGGCGGCCTTTGCTTGTCACCCATGTTGAAAATTTCTACCGCATGTATCGTGCTCTTG
CTGAGCGTTATGACAATGTGACTGGGGAACTACGAAAAAACATGCCATCATCTCTCAAATCACAGGGCTCAGGTATATCT
GAATCTGACTCTGAGGCACAGTCTACTCCCGCATCTCCTGAGTCTGAAAAGAAGACCTCAAAACAGAAGGGTAAAAAGGG
AAGCGATGGATCATCATCATCTTCTTCTTCTGATTCTGATTCCGAGGTTGATGAAGTGAACCAAGAGAATGGCAATGGGA
TTACTCATGCACTGAACGAACGAGTTATTGAGCTAGAAGATGAGCTCAAGGAAGCAATGGAGAAACTTGAGGCACTCGAG
GAAAAGAATATGCGGTGCCAATGTGAAAACCTTGAAGAGAAGTTGCTAACTTCACAATCAGAAATCAACAGCCTTCAGAA
GGATCTTGAAGAAAAGGTCCGTTCATTGGAGAGTATCAAAGAAATTAGCAGTGAAAAGGAGGATTTGGAAGCTGCCGTTC
TGGAAAACAAGAACAAGTTCGAGGAATTAAAAGGAGAGATGGCCTTAGCAGCTAAGCATCATGAGGCCCAACTTTCATAT
CGTGACCTTGAAATTGAGAAATGCAAGCGGGAGCTTGAGGAAGTATCTGAGAGGTATACCTATGGTAAGTCTACTCTTGA
GACTGAAATCGGAGAGCTCCAAGAAGTGGTCAAGAACTTGGAAGGGAACTTGGCCAAACTGTCGGAAGAGAAGTTGCAGC
TTGAGGCACAGGTTATGGACCTTGAACAAACATCTCACAGCCTAGATGATTCATCTGCTGAAATTAAGAAGCTACAGAAG
GTAATCAAGGATCTGCAAGCAAGACTGGAAAATGATTCAAATGAGAAGAGAGTGCTCGAGGAACGTGCTATCGAGTTTGA
GCAAGTTCATAGGGAGTTGGAGGATTCGAGGGCTGAAACAGTGGAGCTACAAACTAGAATTGAGAAACTCAAAGCTGATC
TGGAAGGAGCACTTCAAGAGAAATTGATGTTGGAGGGCTGTGTCAAGGATCTGGAACATGCCATTGCTAGTAAGTTGGAG
AAATCCTCTCTTGAGAAGTCCTCTCTCGATGCTGAGATCCTACAACTGTCAGAAGCTAATGCTTCTCTTGAAGACAAGTT
GTCATCCACAGAGGCGCAGCTTAAGCAACTTCATGCCGAAAAGGCAGAAGCATCTGCTGAGAGTGAGAAGCTGATCTCTG
GATTGAAGCAAGATATTGCCAATCTTAAGACAGAGCTCGAGTTAGTGTCCTCACAGAAAGCTGCAGTTGATAATAAGGTG
TCTGGTTTGCTGAGTGATCTCACAACTTGTGATGAAAAGATGAAGGAGATGGATAGCCACTTGCATCAGCTGCACCTGGA
GCATGTGCAAGTGATTGCAGAGGCAGATGCTGCACGGAAGTCCGTGGCAGAACTGCGTGCACGGGTGCGTGAGCTCGAGG
AAGAGGTTGAGAAACAGAAGCTCATGGCCTTCGACAGCGCAGAGGGGAAGCGGGAGGCGATCAGGCAGCTGTGCTTCTCG
CTCGAGCACTACCGCGACGGGTATCAGCAGCTCCGGCAAGTTCTTCAGGGCCACAAGAGGCCGATGGTGATGGCAACGTG
ATCAGCCAGCCAGCAGCTTGCTGGATCCTCTTCTCTCTGGATGCCTAAAGTCAGTATGTCAATGTAATGTAAACATCCCT
TTCCCCTTCCCCTTTCTTCATGTAGCTTCGGTCTACTCCTTAGTAGTCTTGGT-AAAGCTTGTGCTTTGTAGTTGCTTCA
GCTACTGGTACTGTCTATTGTGTGTGATGTAATATATTATGGACCATTATGGCATTCCTTTTCAAAATCAATCTGCCTGT
TGCTGCTGTGAGTCTGAAGATAATTTCTGTGTTTGCTCTTCCAAATGCTGATGAACTTGATGGTTAAAAACCTCATGACT
AT-------------TTTTTTGCCATTTAATGAGCCTCATATGATCTGACATGAATTCACATATCTATCGTCTAATTCGC
CTTTCCTGTTTATGGGATCTCCTTGTGCTGTTGTGAACTTGCCCTTCCATTTCTAAGAAGTCTGAAATACTGAAATTGTG
TTTAAAGGGAAGCAGGACTAGTATAGGAGGAACTGAGAAGCAAGACCAGTTCAGAGATCACGGCAGAAATGATGGAGGTT
GCAGCCATGACCACCTGTCTGCTGTCT-------CTGTCTCTCTGACCAGTCCATGCCTTGAGCTGCCGACCTTACTTTT
CTCCATGATTTGCTCTACAAAAGCTTATATAGTGCACCTT-GAAAG-TTTTGGAGATGACTGCATTCTTGGGAGCTGCAA
GAAATCTCAATTCTCTGGTACTAGAAACACGGCATAATTATCACAGCACATA-TCATACTGTATTTTGCAAATGCAGAAC
A--GGGAGACAGCACACCCACTAAAATACAAGGAGATGTGTGCAGGGATTGGACCATTAG-TTTAACTGATTCTTTTAAT
GCCCTGGAGATCAGGAATTCAGAAGCTTCACATGGCTAAGCGTCAGTTTTTATGGTCTGCACTTTACTCACCTGCAAGTT
TCAGGCTTTCAGAC-TTCAGTTTCTTGCCCATTTAATTGGCCAACCTCCCTCATTGATGCCTGTTTAAGCCTGCTTACCC
TACGATTCCTTGCAGTCAGTTAATTCTTTTCTTGAAGCCGCACCCGTCAGCCGTCCGATCCAGCGATCCAACGGTAGATC
TCTTTTCCTTTTCTTTGACCTTT------TTTTG---TGTGAATAAAGTTCCTTTTCTT-TGACTTCTGCATCCCC----
--TTCAAACCCACTGCTATACAAGGCCACAAAACATTGCAACTGGTTAGTTGATACTTCTCTGTTCATAAG-----CAAC
TATTTACTTTCTGC
>chr3B_1
TATTATACAATTTACTGAGATCCAAGATAGGTGTATCTGTCCTTTCACGACTTG-AAAATGTACTAGTTGACAATACACT
TTACTAGTTGAGTTGTCGTATGTTGATTCCTGACCTCACCCCATGGCTGCATGTGTCCACCTAGGTGTAAGCCAGGCCAT
GTTTTGTGGTTGACAGACAAATATTATTTTGTACTATTAAACTTGGCTGGCCTCAATTATTGGTTGGATAGAAGTTGACT
ACAGCTCAACTGCAGTTTCAAATTTCACCTTGAACCCTGGCCTTTTGATCCGTGTGGGGTCAGGACAAATGTGATGTCCT
TGCCTGTGATTGAATTTATTCTGAGTTCACTGAATTATGCTTCTGCTCTGACCTAACAAGGGACAGGTAGTTGCCACATC
TTTTGCGCTGTGGTGTGTGATAAGCTGATAACCAAGTCCGGCCATGCTTCTATGATGAATTAGCTCTCCAACTAACATTG
GTACCCACAATATTCGATCAATTTCACTGTAATAGTTTTTCATGATTGGCTGATAAGATCATGATTTACGCATGAATAAT
GATAGGCCGCATCTTCTTGGTAGTTAATCAGTTTTCTGGTCTCTGCATTATGGAGGTTGCCTTGCATAGTCCTTTCCCTC
TTCCTCTTGAATAGAGTGAACTAGTACTTTTCTATACATAGGCGGTGCAAACCTTCATACTTCATACCATTCATGGTTTT
TAATTTTATGCATTTTGGATATTTTCTTTCTTTCCATCTATTATTCTTATGGGTGTACTCAGGCCGTGCCTTCTTGTTTT
CTGTTGTCACAAATACTTGCAATGGTATTCTGGTAATCTAGCCATAAGCTAACCTTGCAAGCTTCTTTTTTGTT-CCCCC
CTAATTTCACCACATATTACGAGGAAAGTGTTTTTTTAATTGCAGTCTTGCAGATCACCCTTTAGCACAAGAGTCATCAA
CTTGTATGTTTCACATTCTCATTTTTGCCTCCATCTCATGATTAGGTCTACCTTTTACAAGATTCCCTATTTATCGTGAG
AATGAAGCGTATGAGTAGAATGCCCACAAGGAAGGCCCATTCATGGTGGTGGGACAGTCATATTAGTCCCAAAAACAACA
AATGGCTAGCTGATAATCTAGAAGGTAATGACTCTATTCTTGTTTCTTCAATTGCTTATGTACCAGATACTTCTGTCACT
TGCTAGGAGTAGCTATCTTTAGCACCATGGAAATTTCATGCTCTGATGTTTCATCCTGCAATCTATTTACACTTGCAACC
TTTTCTGAACAAACAGAGATGGATAAGCAAGTTAAAGAGATGCTGAAGCTCATTGAGGATGAAGGAGATTCTTTTGCAAA
GAAGGCTGAGATGTATTACCAAAGGCGGCCTTTGCTTGTCACCCATGTTGAAAATTTCTACCGTATGTATCGTGCTCTTG
CTGAGCGTTATGACAATGTGACTGGGGAACTACGAAAAAACATGCCATCATCTCTCAAATCACAGGGCTCAGGTATATCT
GAATCTGACTCTGAGGCACAGTCTACTCCCGCATCTCCTGAGTCTGAAAAGAAGACCCCAAAACAGAAGGGTAAAAAGGG
AAGTGATGGATCATCATCTTCTTCTTCTTCTGATTCTGATTCTGAGGTTGATGAAGCGAACCAAGAGAATGGCAATGGGA
TTACTGATGCACTGAACGAACGAGTTATTGAGCTAGAAGATGAGCTCAAGGAAGCAATGGAGAAACTTGAGGCACTCGAG
GAAAAGAATATGCGGTGCCAATGTGAAAACCTTGAAGAGAAGTTGCTAGCTTCGCAATCAGAAATCAACAGCCTTCAGAA
GGATCTTGAAGAAAAGATCCGTTCATTGGAGAGTATCAAAGGAATTAGCAGTGAAAAGGAGGATTTGGAAGCTGCAGTTC
TGGAAAACAAGTACAAGTTCGAGGAATTAAAAGGAGAAATGGCCTTAGCAGCTAAGCATCATGAGGCCCAACTTTCATAT
CGTGACCTTGAAATTGAGAAATGCAAGCGGGAGCTTGAGGAAGTATCTGAGAGGTATACCTATGATAAGTCTACCCTTGA
GACTGAAATCAGAGAGCTCCAAGAAGTGGTCAAGAACTTGGAAGGAAACTTGGCAAAACTGTCGGAAGAGAAGTTGCAGC
TTGAGGAACAGGTTATGGAGCTTGAACAAACATCTCACAGCTTAGATGATTCATCTGCCGAAATTAAGAAGCTACAAAAG
GTAATCAAGGATCTGCAAGCAAGACTGGAAAATGATTCAAATGAGAAGAGAGTGCTCGAGGAACGTGCTATCGAGTTTGA
GCAAGTTCATAGGGAGTTGGAGGATTCGAGGGCTGAAACAGTGGAGCTACAAACTAGAATTGAGAAACTCAAAGCTGATC
TGGAAGGAACACTTCAAGAGAAATCGATGTTGGAGGGCTGTGTCAAGGATCTGGAACATGCCATTGCTAGTAAGTTGGAG
AAATCCTCTCTTGAGAAGTCCTCTCTTGATGCTGAGATCCTACAACTGTCAGAAGCTAATGCTTCTCTTGAAGACAAGTT
GTCATCCACAGAGGCGCAGCTTAAGCAACTTCATGCCGAAAAGGCAGAAGCATCTGCTGAGAGTGAGAAGCTGATCTCTG
GATTGAAGCAAGATATTGCCAATCTTAAGACAGAGCTCGAGTTACTGTCCTCACAGAAAGCTGCAGTTGATAATAAGGTG
TCTGGTTTGCTGAGTGATCTCGCGACTTGTGATGAAAAGATGAAGGAGATGGATAGCCACTTGCATCAGCTGCACCTGGA
GCATGTGCAAGTGATTGCAGAGGCAGATGCCGCACGGAAGTCCGTGGCAGACCTGCGTGCACGGGTCTGTGAGCTCGAGG
AAGAGGTTGAGAAGCAGAAGCTCATGGCCTTTGACAGTGCAGAGGGGAAGCGGGAGGCAATCAGGCAGCTGTGCTTCTCG
CTCGAGCACTACCGCGACGGGTATCAGCACCTCCGGCAAGTTCTGCAGGGCCACAAGAGGCCGATGGTGATGGCAACGTG
ATCAGCCAGCCAGCAGCTTGCTGGATCCTCTTCTCTCTGGATGCCTAAAGTCAGTATGTCAATGTAATGTAAACATCCCT
TTCCCCTTCCCCTTTCTTCATGTAGCTTCGGTCTACTCCTTAGGAGTCTTGGT-AAAGCTTGTGCTCTGTAGTTGCTTCA
GCTACTGGTACCGTCTATTGTGTGTGATGTAATATATTTTGGACCATTATGCCATTCCTTTTTC-AATCAATCTGCCCGT
TGTTGCCGTGAGTCTGAAGATGATTGCTGTGTTTGTTCTTTCAAATCCTGATGAACTTGATTGCTGCAAACCTGTGACAT
GGCTCATTGTTTTTCTTTTTTGCCATTTAATGAGCCTCATATGATCTAATTTGAATTCGCATATCTATCGACTAATTTGC
CTTTT---------GGATCTCCTTGTGCTGTTGTGAACTTGCCCTTCTATTTCTATTGTCCCAG-AAGTCTGAAATTGTA
TTCAAAAGGGTAGCAAGAGTG-----------CTGAGAAGCAAGACCAGTTCAGAGATTACGGCAGAAATGATGGAGGTG
GCAGCCATGACCACCTGTCTGCTGTCTGCTGTCTCTGTCTCTGTGACCAGTCCATGCCTTGAGCTGCTGACCTTACCTTT
CTCCATGATTTGCTCTAGAAAAGCTTACATAGTGCATTCTCGAAAG-TTTTGGAGATGACTGCATTCTTGGAAGCTGCAA
GAGAAGTTTACTCCGTGGC---AGAAACACGGCATAATTATCACA--ACTTAGGCATACTGTATTTTTTAATTCCACTAA
AATGGGAGACAGCACATCCACTAAAATACAAGGAGATGTGTGCAGGGATTGGACCATTAG-TTTAACCGATTCTTTTAAT
GCCCCGGAGATCAGGAATTCAGAAGCTTCACATGGCTCAGCGTCAGTTTTCACGGCCTGCACTTTACTCACCTGCAAGTT
TCAGGCTTTCAGACATTCAGTTTCTTGCCCATTTAATTGGCCAACCTCCCTCATTGATGCCTGTTTAAGCCTGCTTACCC
TACG-TTCCTGGCAGCCAGTTAATTCATTA-TTGGAGCTGCAAACATCAGCCGTCCGATCCAGTGATCCAACGGTAAATC
TCTTTTCCTTTTCTTTGACCTTT------TTTTTTCCTGCGAATCAAGTTCCTTTTTTTCTGACTTGTTCATCCCTTCAT
ACCGATTGCTATACA-----------------------------------------------------------------
--------------
>chr3A_1
TATTATACAATTTACTGAGATCCAAGATAGGTGTATCTGTCCTTTCATGACTTG-AAAATGTACCAGTTGACAATACGAT
TTGCTAGTTGAGTTGTTGTATGTTGATTCGTCTCCTCACCCCATGGCTGCATGTGTCCACCTAGGTGTAAGCCAGGCCAT
GTTTTGTGGTTGACAGACAAATATTATTTTGTACTACTAAACTTGGCCGGCCTCAATTATTGGTTGGATAGAAGTTGACT
ACAGCTCATCTGCAATTGCAAATTTCATCTTGAACCCTGGCCTTTTGATCCGTGTGGGGTCAGGACAAATGTGACGTCCT
TGCCTGTGATTGAATTTATTCTGAGTTCACTGAATTATGCTTCTGCTCTGACCTAACAAGGGACAGGTAGTTGCCACATC
TTTTGCGCTGTGGTGTGC--------GATAACCAAGTCCAGCCATGCTTATATGATGAATTAGTTCCCCAACTAACATTG
GTACCCACAATATTCGATCAATTTCGCTGTAATAGTTTTTCATGATTTGCTGATAAGATCATGATTTACGCATGAATAAT
GATAGCCA-CATCTTCTTGGTAGTTAATCAGTTTTCTGGTCCCTGCATTATGGAGGTTGCCTTGCATAGTCCTCTCCCTC
TTCCTCTTGAATAGAGTGAACCAGTACTTTTCTGTACATAGGCGGTGCAAACCTTCATACTTCATACCATTCATGGTTTT
AAATTTTATACATTTTGGATATTTTCTTTCCAC----CTATTATTCTTATGGGTGTACTCAGGCCGTGCCTTCTTGTTTT
CTGTTGTCACAAATACTTGCAATGGTATTCTGGTAATCTAGCCATAAGCTAACCTTGCAAGCTTCTTTTTTGTT-CCCCC
CTAATTTCACTACATATTATGAGGAAAGTGTTTTTTTAATTGCAGTCTTGCAGATCACTCTTTAGCACAAGAGTCATCAA
CTTGTATGTTTCACATTCTCATTTTTGCCTCCATCTCATGATTAGGTCTACCTTTTACAAGATTCCCTATTTATCGTGAG
AATGAAGCGCATGAGTAGAATGCCCACAAGGAAGGCCCATTCATGGTGGTGGGACAGTCATATTAGTCCCAAAAACAACA
AATGGCTAGCTGATAATCTAGAAGGTAATGACTCTATTCTTGTTTCTTCAATTGCTTATGTACCAGATACTTCTGTCACT
TGCTAGGAGTAGCTATCTTTAGCACCATGGCAATTTCCTTCTCTGATATTTCATCCTGCAATCTATTTACACTTGCAACC
TTTTCTGAACAAACAGAGATGGATAAGCAAGTTAAAGAGATGCTGAAGCTCATTGAGGATGAAGGAGATTCTTTTGCAAA
GAAGGCTGAGATGTATTACCAAAGGCGTCCTTTGCTTGTCACCCATGTTGAAAATTTCTACCGCATGTATCGTGCTCTTG
CTGAGCGTTATGACAATGTGACTGGGGAACTACGAAAAAACATGCCATCATCTCTCAAATCACAGGGCTCAGGTATATCT
GAATCTGACTCCGAGGCACAGTCTACTCCCGCATCTCCTGAGTCTGAAAAGAAGACCTCAAAAGAGAAGGGTAAAAAGGG
AAGTGATGGATCGTCATCATCTTCTTCTTCTGATTCTGATTCCGAGGTTGATGAAGCGAACCAAGAGAATGGCAATGGGA
TTACTCATGCACTGAATGAACGAGTTATTGAGCTAGAAGATGAGCTCAAGGAAGCAATGGAGAAACTTGAGGCACTCGAG
GAAAAGAATATGCTGTGCCAATGTGAAAACCTTGAAGAGAAGTTGCTAGCTTCGCAATCAGAAATCAACAGCCTTCAGAA
GGATCTTGAAGAAAAGGTCCGTTCATTGGAGAGTATCAAAGAAATTAGCAGTGAAAAGGAGGATTTGGAAGCTGCAGTTC
AGGAAAACAAGAACAAGTTCGAGGAATTAAAAGGGGAAATGGCCTTAGCAGCCAAGCATCATGAGGCCCAACTTTCATAT
CGTGACCTTGAAATTGAGAAATGCAAGCGGGAGCTTGAGGAAGTATCTGAGAGGCATACCTATGATAAGTCTATTCTTGA
GACTGAAATCGGAGATCTCCAAGAAGTGGTCAAGAACTTGGAAGGGAACTTGGCAAAACTGTCGGAAGAGAAGTTGCAGC
TTGAGGCACAGGTTATGGAGCTTGAACAAACATCTCACAGCCTAGATGATTCATCTGCTGAAATTAAGAAGCTACAAAAG
GTAATCAAGGATCTGCAAGCAAGACTGGAAAATGATTCAAATGAGAAGAGAGTGCTCGAGGAACGTGCTATCGAGTTTGA
GCAAGTTCATAGGGAGTTAGAGGATTCGAGGGCTGAAACAGTGGAGCTACAAACTAGAATTGAGAAACTCAAAGCTGATC
TGGAAGGAGCACTTCAAGAGAAATCGATGTTGGAGGGCTCTGTCAAGGATCTGGAACATGCCATTGCTAGTAAGTTGGAG
AAATTCTCTCTTGAGAAGTCCTCTCTCGATGCTGAGATCCTACAACTGTCAGAAGCTAATGCTTCTCTTGAAGACAAGTT
GTCATCCACAGAGGCGCAGCTTAAGCAACTTCATGCCGAAAAGGCAGAAGCATCTGTTGAGAGTGAGAAACTGATCTCTG
GATTGAAGCAAGATATTGCCAATCTTAAGACAGAGCTCGAGTTACTGTCCTCACAGAAAGCTGCAGTTGATAATAAGGTG
TCTGGTTTGCTGAGTGATCTCGCAACTTGTGATGAAAAGATGAAGGAGATGGATAGCCACTTGCATCAGCTACACCTGGA
GCATGTGCAAGTGATAGCAGAGGCAGATGCCGCACGGAAGTCCGTGGCAGAACTGCGTGCACGGGTGCGTGAGCTCGAGG
AAGAGGTTGAGAGGCAGAAGCTCATGGCGTTCGACAGCGCAGAGGGGAAGCGGGAGGCAATCAGGCAGCTGTGCTTCTCG
CTCGAGCACTACCGTGACGGGTATCAGCAGCTCCGGCAAGTTCTGCAGGGCCACAAGAGGCCGATGGTGATGGCGACGTG
ATCAGCCAACCAGCAGCTTGCTGGATC--CTTCTCTCTGGATGCCTAAAATCAGTATGTCCATGTAATGTAAACATCCCT
TTCCCTTTCCCCTTTCTTCATGTAGCTTCGGTCTACTCCTTAGTAGTCCTGGTAAAAGCTTGTGCTCTGTAGTTGCTTCA
GCTACTGGTACCCTATGATGTGTGTGGTGTAATATATTATGGATCATTGTGGCATTCCTTTTTC-AATCAATCTGCC---
TGTTGCCGCGAGTCTGAAGATGATCGCTGTGTTTGTTCTCTCAAATCCTGACGAACTTGATTGCTGCAAACCTGTGACAT
GGCTCATTGTTTTTCTTTTTTGCCATTTAATGAGCCTCATATTATCTAGTTTGAATTCGCATATCTATCGAGTAATTTGC
CTTTT---------GGATCTCCTTGTGCTGCTGTGAACTCGCCCTTCTATTTCTATTATCCCAG-AAGTCTGAAATTGTA
TTCAAAAGGGAAGCAAGACTG-----------CTGAGAAGCAAGACCAGTCCAGAGATTATGGCAGAAATGATGGAGGTG
GCAGCCATGACCACCTGTCTGCTGTCT-CTGTCTCTGCCTCTGTGACCAGTCCATGCCTTGAGCTGCTGACCTTACCTTT
CTCCATGATTTGCTCTAGAAAAGCTTACATGGTGCATTCTTGAAAGTTTTTGGAGATGACTGCATTCTTGGAAGCTGCAA
GAAAAGTTTACTCTGTGGC---AGAAACACGGCATAATTATCACA--ACATA-GCATACTGTACTTTTTAATCCCACTAA
AATGGGAGACAGCACACCCACTAAAATACAAGGAGATGTGTGCAGGGATTGGACCATTAGTTTTAACTGATTCTTTTAAT
GCCCTGGAGATCAGGAATTCAGAAGCTTCACATGGCTAAGCGTCAGTTTTCACGGCCTGCACTTTACTCACCTGCAAGTT
TCAGGCTTTCAGAC-TTCAGTTTCTTGCCCATTTAATTGGCCAACCTCCCTCATTGATGCCTGTTTAAGCCTGCTTAGCC
TACGATTCCTTGCAGTCAGTTAATTCTTTTCTTGAAGCCGCACCCGTCAGCTGTCCGATCCTGTGATCCAACGGTAAATC
TCTTTTCCTTCTCTTTCCTTTCTTTTTTCTTTTT---TGTGAATCAAGTTCCTTTTCCT-TGACTTGTTCATCTCTTCAT
AGTTCATACCCATTGGTATACAAGGCCAAAAAACATTGCAACTGGTTTCTTAACACTTCTCTGTTCAGAAATAGCACTAC
TATTTACTTCCTGC
>SNPs
----------------------------------S--------S----------S-------------------------
--------------------------------------------------------------------------------
----S-----------------S-------------------------------------------S-------------
-------------------------------S------------------------------------------------
--------------------------------------------S-----------------S-------S---------
---------------------------SS------------------------------------S--------------
---------------S---------------------------S------------S------------S----------
-------S------------------------------------------------------------------------
-------------------------------------------------S------------------------------
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--------------------------------------------------------------S-----------S-----
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-----------------------------S--------------------------------------------------
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---S----------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
------------------------------------------------S----S--------------------------
---------------------------------------------------------------------------S----
-------------------------------------S------------------------------------------
----------------------------------------------------------------S---------------
------------------------------------------------------S-------------------------
-------------------S--------------------------------------------------------S---
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------------------------S-------------------------------------------------------
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--------------------------------------------S-----------------------------------
---------------------S----------------------------------------------------------
------------------------------S-------------------------------------------------
-------------S--------------------------------------------S---------------------
--------------------------------------------S-----------------------------------
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------------------------------------------------------------------S-------------
-----------S--------------------------------------------------SSS------------S--
--S---S--------------S---S---------S----S-----S--------------S-S-SS------SSSSSS-
SS---------------------------------------------S-SS-------S-----------S------S--
----SSSSSSSSSS---------------------------------S-------SS-SSS-S-S--SS----------S
--S---S--S-SSSSSSSSS-SSSSSSSSSSS--------------------------S--------------------S
------------------------------------------S------------------------S--------S---
-----------------S---------S--------SSS--------------------------------S--------
----SS-SS-S---S---SSSS-----------------------SS------S-------------SS--S-S--SS-S
--------------------------------------------------------------------------------
--------------------------------------------------S-S--S------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S------------S---
---------------------------------S----------S---------------------S-S------S----
------S-----S--S------------S------------------SS--S-S-------------S--S------S--
---------S----
>forward_391
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---------------------------------------------------CCTAACAAGGGGCAGGTAGC---------
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>reverse_1958
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-------------------------------------GATGGCCTTAGCAGCTAAGC-----------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>forward_1916
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AGGAGGATTTGGAAGCTGCC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>reverse_3832
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATGCAGAAC
AGGGAGACAGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
