>input_sequence_34679
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-----------------------------------------------ATGGCGCAAATCATCGACGGCAAGGCCATCGCC
GCCGAAATCAGGCGCGAGATCGGCGCCGAGGTCGCCGTGCTCTCGTCCGCCCACAGCATCGTGAGCCCCTATCTCGCCCG
ACGCCGCCGCTCGACCAATCGACCAGCTGTGGATTGGGATAATGTCCGTGACGCTGACTTTTTCCTTCTGTCGCAGGTGC
CGGGGCTGGCGGTGGTGATCGTGGGGAACAGGAAGGACTCGCAGACGTACGTGCAGATGAAGCGCAAGGCCTGCGCCGAG
GTCGGCATCCGCTCCTTCGACGTCGACCTCCCCGAGGACATCGCCGAGGCCGCGCTCGTCGCCGAGGTCCACCGCCTCAA
CGCCGACCCCGCCGTCCACGGTATCCCCTCCGCAGTCGAATCGGATATACAGTAGTCTTCCTTTCGTGGTACTGGGAGAA
CATGAATGCTGTGTTTGGCACTGTGAGTCTCTCCTGTGTCAGACTGCTTGTGCCGTAGATGCAGTCATTCCTACCTGGTT
CGTTCAGATGAATTTGGAGACGGTTAAATTCGGTCCTAGTTGCGCTCGAGATGGTGAGCCTTTGTGGAGGTGATGCCATT
CGTTTACTGCTTGGGATTCCCTGGCCCGGATTTGCTCTACAGTTGAGTTAGTGTGAAAGAGTAGAGAAGTCTGATCCTGT
TTATTCATGTACAGTTCAATCCTTTGCACTGGAACGTTGTTTACTGGGCGACACTCTGTTTTCAGGCGTCCTGGATCCCA
AATTTTAGCCCGGAATGGCATCAGTTTTCACCATTATGTGTGTTTTCGTTCCCAATTTCTGAGAGATTTGCTTGATTGGG
AATATAATTCTGAACTGGAACATTGTTTCACGGGGTGATACACTTTGGTTGTTCTTAAGTTGTTTCAGGCGTGCCGGAGC
CCAAAATTTTGGCCCAGAATAGCATCAGTACTCATCATCTTGTGTGTTCTATTCCCCAGTTTCTGAGGGATTAACTTTGA
TTGGGAATGTAATTTTAAGTGGTCGCTTCACTGGATTAGGCATGGACTTTAGTTATTTCAAGTCACCTGTGAAGAGAATG
ACATGCCCTAGTTCACATCAGCACAATGACTACTATTTGGGGGAATTATTGCTTCGCTGATGGTTGGAATTTTCTGTTGG
GCGTATGCTTGTAAATCATGCATTCATGTTAGTGCCTAGTTAGTTTTGTTCTCATGCTCTTGGGCCATAGGAGATTTGTT
ACCTGACTTCGATCACCATCTCTAGCTTCTGGCACAAGCCATCAGTTTCCTTAGAGAGCAAATATGAAGCTATAGGGCAC
AAAATGGAGCTTTAGTCGATCAGGTTCTCTTTTTGAAATGTGGT---------CTTAAATTTTCAGTTAAGTACTATTTT
GATATGATTTACTTCGTTGCTAGAATGTTGCTTTGCTAGCTCTGGGCTCTACGCTTCTACAGTCTGGTATTTGGAATTCT
TACTCCTACATGTAGCAAAGCTTGTATACTGACTCTATTGAGTATTTCCTTTTGCACCAGGAATTCTTGTTCAGCTTCCA
TTGCCCAAGCATATCAACGAAGAAAATATCTTAAACCAGATCTCCATTGAGAAAGATGTCGACGGCTTTCATCCTTTGAA
CATTGGCAAGCTTGCAATGAAAGGCAGAGATCCACTGTTCGTACCTTGCACGCCAAAGGTATCGATTGCAGCACTTAAGC
ACGGCATTTCTCAACACTGGTTTGACTGCAGTTTTCATTTGTAACATCTTTGCCTTCGTGTTTTTGTTCACTTATATGAA
GGGATGCATGGAGCTCCTGTCACGAAGTGGCGTCACTGTAAAAGGAAAACACGCAGTTGTGGTTGGGCGTAGCAACATCG
TGGGTTTACCAGTATCCCTTCTCCTTCTGAAAGCGGACGCTACCGTGTCGATCGTGCATTCACGGACCCCAAATCCCGAA
ACAATTGTCCGTCAAGCAGACATTGTCATTGCAGCAGCTGGCCAGGCCATGATGGTACATTATTCTGCGGCGATAAGCCC
ACCCTATTTTATGGCG----TTGCCTTAATTCTGACTGCTGTGTTCTCTTGGCTGTTAGATCAAGGGAGACTGGATCAAA
CCAGGCGCAGCGGTCATCGACGTCGGGACAAACTCCATCGACGACCCAACCAGGAAGTCTGGGTACAGACTCGTTGGCGA
TGTGGATTTCTCGGAGGCAAGCAAGGTCGCGGGTCACCTGACTCCGGTCCCCGGAGGCGTCGGGCCGATGACCGTGGCGA
TGTTGCTGAAGAACACGGTGGACGGCGCCAAGAGGGGTATAGTCAGCTGA------------------------------
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>chr1A_1_TraesCS1A01G092700
CAAAGCACCGGCTCACTGAAGAGGATGGCGCTTCGGGGAGAAAGAGGCAACACTCCCAGATGGGAAGGGCCGCTTGGGGA
GAGAAGAGCGGAGGGGATCGAAAGGAAAGAGGCGAAAGGCTTAGTTGAGCCGAGGAGATAAGATAGAAAGGGCATAAGCG
ATGTGTTTGTCCCACATAGACACATGGAGCAAGGGGAAGGCGACAGATGATACGTGAGAATCAATCAGTCTAAAAGAAAG
CATTTTCCTAAAGTAATTCAT--TTTTTTGTGTAGTTATGGGATGTATATGCGTTGGATGCTCGGAGCAAACCTACGGAG
TTCACTTCATATTATTTTTGAAGTATAGCATTCTGTTAACTTCAACCCAGAGGCCAGAAGTTATTGTCTTTATATGGTAC
AATATTCTGTCACATGCTTCATATGTTTTTTT-------AATTACAAATCGAGAGCACTTTACATTTGCTTTAGCATTAG
GTTCTCTAGTTATTTTA-----TTTTATTTTA---TATGAAACACAGTACAGAAGCAGGGCCCAGGGCCTATTTACGCAG
AAAGCCCAATCAGAAACA--------------------------------------------------------------
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GCCCACGTAGGTAGCAGGCTCAGAATTATCTAACCCACACCAGCACTCGAGTATTATTATTAGCC---------------
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-------------------------------------------------------------------------TAAAGCC
AACAGAAAACAGCACTCGAGTCTCAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGAGAATCTAGTGGTACCCCAATGGCGCAAATCATCGACGGCAAGGCCATCGCC
GCCGAAATCAGGCGCGAGATCGGCGCCGAGGTCGCCGTGCTCTCGTCCGCCCACAGCATCGTGAGCCCCTATCTCGCCCG
ACGCCGCCGCTCGACCAATCGACCAGCTGTGGATTGGGATAATGTCCGTGACGCTGACTTTTTCCTTCTGTCGCAGGTGC
CGGGGCTGGCGGTGGTGATCGTGGGGAACAGGAAGGACTCGCAGACGTACGTGCAGATGAAGCGCAAGGCCTGCGCCGAG
GTCGGCATCCGCTCCTTCGACGTCGACCTCCCCGAGGACATCGCCGAGGCCGCGCTCGTCGCCGAGGTCCACCGCCTCAA
CGCCGACCCCGCCGTCCACGGTATCCCCTCCGCAGTCGAATCGGATATACAGTAGTCTTCCTTTCGTGGTACTGGGAGAA
CATGAATGCTGTGTTTGGCACTGTGAGTCTCTCCTGTGTCAGACTGCTTGTGCCGTAGATGCAGTCATTCCTACCTGGTT
CGTTCAGATGAATTTGGAGACGGTTAAATTCGGTCCTAGTTGCGCTCGAGATGGTGAGCCTTTGTGGAGGTGATGCCATT
CGTTTACTGCTTGGGATTCCCTGGCCCGGATTTGCTCTACAGTTGAGTTAGTGTGAAAGAGTAGAGAAGTCTGATCCTGT
TTATTCATGTACAGTTCAATCCTTTGCACTGGAACGTTGTTTACTGGGCGACACTCTGTTTTCAGGCGTCCTGGATCCCA
AATTTTAGCCCGGAATGGCATCAGTTTTCACCATTATGTGTGTTTTCGTTCCCAATTTCTGAGAGATTTGCTTGATTGGG
AATATAATTCTGAACTGGAACATTGTTTCACGGGGTGATACACTTTGGTTGTTCTTAAGTTGTTTCAGGCGTGCCGGAGC
CCAAAATTTTGGCCCAGAATAGCATCAGTACTCATCATCTTGTGTGTTCTATTCCCCAGTTTCTGAGGGATTAACTTTGA
TTGGGAATGTAATTTTAAGTGGTCGCTTCACTGGATTAGGCATGGACTTTAGTTATTTCAAGTCACCTGTGAAGAGAATG
ACATGCCCTAGTTCACATCAGCACAATGACTACTATTTGGGGGAATTATTGCTTCGCTGATGGTTGGAATTTTCTGTTGG
GCGTATGCTTGTAAATCATGCATTCATGTTAGTGCCTAGTTAGTTTTGTTCTCATGCTCTTGGGCCATAGGAGATTTGTT
ACCTGACTTCGATCACCATCTCTAGCTTCTGGCACAAGCCATCAGTTTCCTTAGAGAGCAAATATGAAGCTATAGGGCAC
AAAATGGAGCTTTAGTCGATCAGGTTCTCTTTTTGAAATGTGGT---------CTTAAATTTTCAGTTAAGTACTATTTT
GATATGATTTACTTCGTTGCTAGAATGTTGCTTTGCTAGCTCTGGGCTCTACGCTTCTACAGTCTGGTATTTGGAATTCT
TACTCCTACATGTAGCAAAGCTTGTATACTGACTCTATTGAGTATTTCCTTTTGCACCAGGAATTCTTGTTCAGCTTCCA
TTGCCCAAGCATATCAACGAAGAAAATATCTTAAACCAGATCTCCATTGAGAAAGATGTCGACGGCTTTCATCCTTTGAA
CATTGGCAAGCTTGCAATGAAAGGCAGAGATCCACTGTTCGTACCTTGCACGCCAAAGGTATCGATTGCAGCACTTAAGC
ACGGCATTTCTCAACACTGGTTTGACTGCAGTTTTCATTTGTAACATCTTTGCCTTCGTGTTTTTGTTCACTTATATGAA
GGGATGCATGGAGCTCCTGTCACGAAGTGGCGTCACTGTAAAAGGAAAACACGCAGTTGTGGTTGGGCGTAGCAACATCG
TGGGTTTACCAGTATCCCTTCTCCTTCTGAAAGCGGACGCTACCGTGTCGATCGTGCATTCACGGACCCCAAATCCCGAA
ACAATTGTCCGTCAAGCAGACATTGTCATTGCAGCAGCTGGCCAGGCCATGATGGTACATTATTCTGCGGCGATAAGCCC
ACCCTATTTTATGGCG----TTGCCTTAATTCTGACTGCTGTGTTCTCTTGGCTGTTAGATCAAGGGAGACTGGATCAAA
CCAGGCGCAGCGGTCATCGACGTCGGGACAAACTCCATCGACGACCCAACCAGGAAGTCTGGGTACAGACTCGTTGGCGA
TGTGGATTTCTCGGAGGCAAGCAAGGTCGCGGGTCACCTGACTCCGGTCCCCGGAGGCGTCGGGCCGATGACCGTGGCGA
TGTTGCTGAAGAACACGGTGGACGGCGCCAAGAGGGGTATAGTCAGCTGATTTGCTGCGTGATTTGGTAATGTGGGGATG
ATGTTGTAACTGGGTGCATAGACTAAAATCGGTTCCCCATTTTGTCATGTCTTGCGCTATTTCGAGATCAATAAACGACG
CTCTGTCGCTCACCAGTTGGGGTGTCCC-----TTTTTTGGCAAACTAAAACCCTGCTTTGGCTGGCGCTCTACCCTACA
TACGCAGTCGCCGCTGGCGAGGCAGGGACGAAGCAAATCCAGGTGCGTTCGAGATAGAGTAGATGTGGCCTCTGAGCACC
TCTCTGCTCAGCAACCACACACTGAAGCCTGAAGAAACCACGGGAGCTGATTAACCCCTTGCACGGGCACAAGGCACCGC
ACGTGGATAAGGCGATTTGGCGGTGGTGGCCGCCTGGCCGGCGGTATTTTCGGCTGGGGAAAAAGAAGGTGGGGTGTAGG
TTGAAGAAGGGCTGCTGACCGTTGGATCTGTATCCGATGTCCCAAATGAATTGACCGGCCCTAAAACAATTTTCAATCAA
TTTACCTGTAGCCTATCCCCACTGTACCAAAATATAAAACGCTTTTTCAGTTCAATTTTAAATGCAAACACTACTACTGC
CTCTGTACCAAAATATAAGAGCATCTCCAACAGCTGTGCGGCAGCGCGGTGCGCTAATTTTTTTTTTGCAGCGCTGAAAT
AGTGTTTTTGCGCGCGGGAGGTTTACCATATGCACAAAAACAACTCGACGGCCCCACATGCAGCAACCCGTGCGCACAAG
CCGGCACCCCAAGCGCACAAGCCGGCACCCTAAATTTGCAACCCCGCAGCCCGCGTGCTTTGCTGGAGCGTTTTTCTTGG
TCATTTATATAGCACCTCTGTTGGAGATGTTCTAAGACGTTTTTGCAGCTTTTGCAGCTGCAAAAACATCTAATTTGCAG
TCTAATATTTTGGTAGGGAGGGAGTAGATCCGAAGCTATCTGTAC-GTAAGTTTGGAATTCAGGGATTTTATTCCACCAA
GCACTCAACATATAAG
>chr1D_4
---AGCACCAGTTCATCGAAGGGGATGGCGCTCCGAGGAGAAAGAGGCAACGCTCCCCGAAAGGAAGGGGCGCTTGGGGA
GAGAGGGGCAAAGGGGATCGAAAGGAAGGAGGCGGGAGGCTCAGCTGGGCCGGGAAGATAAGATAAAAAGGGCATAAGCG
ATGTGTTTGTCCCACGGGGACACATGGAGTAAGGGGAAGGAGACAGATGATACGTGAGAATCAGTTGGTCTAAAAG-AAG
CATTTTCCTAAATAAATTTGTTGTTTTTTGTGTATACATGGGTTGTATATGCGTTGGACGCTCACAGCAAATCTATGG-G
TTCACTTCATATTATTTTTTAAGAACAACATTCTGTTAACTTCAATTGAGAAATTTTTCTGCT-----TTTGTATTGTAT
AATATTCTGTCACATGCTTCATATGTTTTATTTTTTTAAAATTACAAATCGAAAGCACTTTACATTTACTTTAGCATTAG
GT--TCTAGTTATTTTA-----TTTTATTTTATTTTATGAAACACAGTACAGAAGCATGGCCCAGGGCCTATTTACGTAG
AAAGCCCAATTAGAAATAA-------------------------------------------------------------
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--CCATGTAGGTAGTAGGCTCAGAATTATCTAACCCACAC-ACCACTGGAATACTATATACTCCCTCCATTCCAAAATAT
AGTGCGCCCACGCTTTCTAAGGTCCAACTTTAACCATAAATTTAACCAACGAGACCGACTGCGGCGCAAGAAAAAATTAT
ATAATCGAAAACTTCTTTCGAATACGAATTTACTGGTATAATTTTTGCTCCCGTCACAATCCGTCTCATTGGCTAAATTT
ATGGTTAAAGTTGAAGCATGGGAATAGAGAAAACACTATATTTTGGAACGGATGGAGTACTGTATATTAGCCTTAAAAAC
AACAGAAAACAGCACTCGAATCTCAGTCGTCGTCGCTGCAAGGAGAGAGAGA---------GA-----------------
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---------------------------GAGAATCTAGTGCTACCCCAATGGCGCAAATCATCGACGGCAAGGCCATCGCC
GCCGAAATCAGGCGCGAGATCGGCGCCGAGGTCGCCGTGCTCTCGTCCGCCCACAACATCGTGAGCCCCTATCCCACCCG
ACGCCGCAGCTGGACCAATCGACCAGCTGTGGATTGGGATAATGTCCGTGACGCTGATTTTTTCCTTCTGTCGCAGGTGC
CGGGGCTGGCGGTGGTGATCGTGGGGAGCAGGAAGGACTCGCAGACGTACGTGCAGATGAAGCGCAAGGCCTGCGCCGAG
GTCGGCATCCGCTCCTTCGACGTCGACCTCCCCGAGGACATCTCCGAGGCCGCGCTCGTCGCCGAGGTCCACCGCCTCAA
CGCCGACCCCGCCGTCCACGGTATCTCCTCCGCAGTCGAATCGGATATACAGTAATCTTCCTTTCGTGGTACTGGGAGAA
CATGGATGCTGCGTTTGGCACTGTAATTCACTCCTGTGTCAGTCTGCTTGTGCCGTAGATGCAGTCATTCCTAGCTGGTT
TGTTCAGATGAATTTGGAGATGGTTAAATTCGGTCCTGGTTGCACTCGAGATCAC--GCCTTTGTGGCTGGGATGCCATT
CGTTTACTGCTTGGGATTGCCTGG-CCGGATTTGCTCTTCAGTTGACTTAGCGTGAAAGGATAGAGAAGTCTGATCCTGT
TTATTCGTGTATAGTTCAATCCTTTGAAATGGAACGTTGTTTACTGGGCGACACTCTGTTTTCAGGCGTCCTGGGTCCCA
AATTTTAGCCCGGAATGGCATCAGTACTCACCATTATGTGTGTTTTCTTTCCCAATTTCTGAGAGATTTGCTTGATTGGG
AATATAATTCTGAACTGGAACATTGTTTCACGGGGTGATACACTTTGGTTGTTCTTAAGTTGTTTCAGGCGTGGCGGAGC
CCAAAATTTTGGCCCAGAATAGCATCAGTACTCATCATCTTGTGTGTTATGTTCCCCAGTTTCTGAGGGATTAGCTTTGA
TTGGGAATGTAACTTTAAGTGGTCGCTTCACTGGATTAGGCATGGACTTTAGTTATTTCAAGTCACCTGTGAAGAGAATG
ACATGCCCTAGTTCACATCAGCACAATGACTACTATTTGGGGGAATTATTGCTTCGCTGATGGTTGGAATTT-CTGTTGG
GCGCATGCTTGTAAATCATGCATTCATGTTAGTGCCTAGTTAGTTTTGTTCTCATGCTCTTGGGCCATAGGAGATTTGTT
ACCTGACTTCGATCACCATCTCTAGCTTCTGGCACAAGCCATCAGTTTCCTTAGAGAGCAAATATGAAGCTATAGGGCAC
AAAATGGAGCTTTGGTCGATCAGGTTGTCTTTTTGAAATGTGGTTGCCAGTTTCTTAAATTTTCAGATAAGTACTATTTT
GATATGATTTACTTCGTTGCTAGAATGTTGCTTTGCTAGCTCTAGGCTCTACGCTTCTACAGTCTGATATTTGGAATTCT
TATTCCTACATGTAGCAAAGCTTGTATACTGACTCTATTGAGTATTTCCTTTTGCACCAGGAATTCTTGTTCAGCTTCCA
TTGCCCAAGCATATCAACGAAGAAAATATCTTAAACCAGATCTCCATTGAGAAAGATGTCGACGGCTTTCATCCTTTGAA
CATTGGCAAGCTCGCAATGAAAGGCAGAGATCCACTGTTCGTACCTTGCACGCCAAAGGTATCGATTGCAACACTTGAGC
ACGGCATTTCTCAACACTGGTTTGACTGCAGTTTTCATTTGTAACATCTTTGCCTTCGTGTCTTTGTTCACTTATATGAA
GGGATGCATGGAGCTCCTGTCACGAAGTGGCGTCACTGTAAAAGGAAAACACGCAGTTGTGGTTGGGCGTAGCAACATCG
TGGGTTTACCAGTATCCCTTCTCCTGCTGAAAGCGGACGCGACCGTGTCGATCGTGCATTCACGGACCCCAAATCCCGAA
ACAATTGTCCGTCAAGCAGACATTGTCATTGCAGCAGCTGGCCAGGCCATGATGGTACATTATTCTGCGGCGATAAGCCC
ACCCTATTTTATGGTGTTGCTTGCCTTAATTCTGACTGCTGTGTTCTCTTGGCTGTTAGATCAAGGGAGACTGGATCAAA
CCAGGCGCGGCGGTCATAGACGTCGGGACAAACTCCATCGACGACCCAACCAGGAAGTCTGGGTACAGACTCGTTGGCGA
TGTGGATTTCTCGGAGGCGAGCAAGGTCGCGGGTCACCTGACTCCGGTCCCCGGAGGCGTCGGGCCGATGACCGTGGCGA
TGTTGCTGAAGAACACGGTGGACGGCGCCAAGAGGGGTATAGTCAGCTGATTTGCTGCGTGATTTGGT-ATGTGGGGATG
ATGTTGTAACTGGGTGCCTAGACTAAAATCGGTTCCCCATTTTGTCATGTCTTGCGCTATTTCGAGATCAATAAACGACG
CTCAGTCGCTCACCAGTTGGGGTGTCC---TTTTTTTTTGGCAAACTAAAACCCTGCTTTGGCTGGCGCTCTTCCCTACA
TACGCAGTCGCCGCTGTCGAGGCAGGGACGAAGCAAATCCAGATGCGCTCGAGATAGAATAGGTGTGGCCTCTGAGCACC
TCTCTGCTCAGCAACCACACACCGAAGCCTGAAGAAACCACGGGAGCTGATTAACCCCTTGCACGGGCACAAGGCACCGC
ACGTGGATAAGGCGATTTGGCGGTGGTGGCCGCCTGGCCGGTGGTACGTTCGGCTGGGGAAAAAGAAGAAGGTGG---GG
TTGAAGAAGGGCTGCTGACCGTTGGATCAGTATCCGATGTCCCAAATGAATTGACTGACCCTAAAACAATTTTCAATCAA
TTTACCTGTAGCCTATCACCACTGTACCAAAATATAAGACGCTTTTTCAGTTCAATTTAAAGTGCAAACATTACTACTGC
CTCTGTACCAAAATATAAGACATTTTTGCAGTTCAATTTAAA--------------------------------------
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---------------------------------------------------------CTGCAAAAACGTCTAATTTGCAG
TCTAATATTTTGGTATGGAGGGAGTAGATCCGAAGCTATCTGTACTGTAAGTTTGGAATTCAGGGATTTCATTCCACCAA
GCACTCAACATACAAG
>chr1B_4
---AGCACCAGTTCACCGAAGGGGATGGCGCTTCAAGGAGAAAGAGGCAACGCTCCCTGAAGGGAAGGGCCGCTTGGGGA
GAGAGGGGTGGAGGGGATCGAAAGGGGAGAGGCGGGAGGCTCAGTTGGGCCGAGAAGATAATATAGAAACGGCATAAGCA
ATGTGTTTGTCCCATAGGGACAGATGGAGTAAGGGGGAGGCAACAGATGATATGTGAGAATCAATCGGTCTAAAAG-AAG
CATTTTTCTAAAGAAAATCATCGTTTTTTGTGTAGACATGGGTTGTATATGC-TTAGACGCTCAGAGCAAACCTACGGAG
TTCACTTCTTATTATTTTT-AAGAATAGCATTATGTTAACTTCAATCCAGAAGTTTTTCTTCCTC-----TATATTGTAC
AATATTCTGTCACATGCTTCATATGTTTTATTTTTAAAAAATTACAAACCGAGAGCACTTTACATTTGCTTTAGCATTAG
ATTTCTAGCGTTATTTAGGGGTTTTCATTTTATCTTATGAAACACAGTACAGAAGCAGGGCCCATGGCCTATTTACGTAG
AAAGCCCAATCAGAAACATCCCACGTAGGTAGCAGGCTCAGAATTACAAACCGAGAGCACTCTAAGTCTACTGGTACCCC
AATAGCACAAATCATCGACGGCAAGGCCATCGCCGGCAAAATCAGGCGCGAGATCACCGTCGAGGTTGCCACGCTCTTGT
TCGTCCACAACGTCGTGAGCCCCTTTCCCATCCGACGTCGCCACTGGACCAATCGACGAGCTATGGATTGGGATAATGTC
GGTGACGCTAACTTTTTTCTTCTGTCGCAGGTGTCAGGACTTTTTCCTTCTAGTCTAAGAATTGAATCTGGGTGGGCGGG
TTCTAAAAAGAAGGATTTTTGTGACACCTAATTATGCACTTATTTTCACAAGGTTCCAGCAATGATGTGTGAGTATTGTA
CAATTATCATTTTAAAGTTTTTTAGAAATGTTATCTAGTTACTTTTTTAGTTGACTAGATAATTGCACCTGCATCGCAAC
CGGAGCATATATAATCTAGTAGATTAGCATGTGGCTGCATGTCTATTATTATATTGATGCGCTAAAATCTTAGTAATTTT
TTATGCGCAATAACCATGATTTGCTTGTCATCTTATTGTTAAGCACTTATTGGGTAAGAACTTACTCCCTTTGTAAACTA
ATATCCTTTTAGATCACTAGAGTAGTGATTTAAAAAATATTAGTTTATATAGGCAAGTTAATAAGATGTGGGACAGTTGA
TTCGATTTTAGAGAAATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGGGGGCATAATAGAGAGGTTGGAAGAAGAAAAAGTGAAACATAAACCTTGCATTCTTTTTAAAAAATTTA
GAACCTTGCATTATTTTTGAGTAGTAGAGATATTATCCAGTTACTTTTTTATGGGCTTATCCAGTTACCTTTTTTTAGAA
AAAATGTTTATCCAGTTACCTATATCGAGGTTCCCATTTGCGCACAGGGCCTATTTATACAGAAAACCCAATCAGAAACA
GCCCACGTAGGTAGCAGGCCCAGAATGACTTAACCCACAC-AGCACTCGAGTCCCCTA----------------------
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---AAAAAAAAGAACTCGAGTCGCAGTCGTCGTAGCTGCAAGTAGAGAAGGAGAGAGAGGGGA-----------------
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---------------------------GAGAATCTAGTGCTACCCCAATGGCGCAAATCATCGACGGCAAGGCCATCGCC
GCCGAAATCAGGCACGAGATCGGCGCCGAGGTCGCCGCGCTCTCGTCCGCCCACAACATCGTGAGCCCCTATCCCACCCG
ACGCCGCCGCTGGACCAATCGACCTGCTGCGGATTGGGATAATGTCCGTGACGCTGACTTTTTCCTTCTGTCGCAGGTGC
CGGGGCTGGCGGTGGTGATCGTGGGGAGCAGGAAGGACTCGCAGACATACGTGCAGATGAAGCGCAAGGCCTGCGCCGAG
GTCGGCATCCGCTCCTTCGACGTCGACCTCCCCGAGGACATCTCCGAGGCCGCGCTCGTCGCCGAGGTCCACCGCCTCAA
CGCCGACCCCGCCGTCCACGGTATCTCCTCCGCAGCCGAATCGGATATGC-----TCTTCCTTTCGTGGTACTGGGAGAA
CATGGATGCTGTGTCTGGCACTGTAATCCACTCCTGTGTCAGTCTGCTTGTGCCGTAGATGCAGTCATTCCTAGCTGGTT
TGTTCAGATGAATTTGGAGATGGTTAAATTCGGTCCTGGTTGCACTCGAGATCAC--GCCTTTGTGGCTGGGATGCCATT
CGCTTACTGCTTGGGTTTCCCTGG-CCGGATTTGCTCTTCAGTTGACTTAGCGTGAGAGGATAGAGAAGTCTGATCCTGT
TTATTCGTGTATAGTTCAATCCTTTGAAATGGAACGTTGTTTACTGGGCGACACTCTGTTTTCAGGCGTCCTGGATCCCA
AATTTTAGCCCGGAATGGCATCAGTACTCACCATTATGTGTGTTTTCGTTCCCAATTTCTGAGAGATTTGCTTGGTTGGG
AATATAATTTTGAACTGGAACATTGTTTCACGGGGTGATACACTTTGGTTGTTCTTAAGTTGTTTCAGGCGTGCTGGAGC
CCAAAATTTTGGCCCAGAATGGCATCAGTACTCATCATCTTGTGTGTTCTGTTCCCCAGTTTCTGAGGGATTAGCTTTGA
TTGGGAATGTAATTTTAAGTGGTCGCTTCACTGGATTAGGCATGGACTTTAGTTAT---AAGTCACCTGTGAAGAGAATG
ACATGCCCTAGTTCACATCAGCACAATGACTAATATTTGGGGGAATTATTGCTTCGCTGATGGTTGGAATTTTCTGTTGG
G-GCATGCTTGTAAATCATGCATTCATGTTAGTGCCTAATTAGTTTTGTTCTCATGCTCTTGGGCCATAGGAGTTTTGTT
ACCTGACTTAGATCACCATCTCTAGCTTCTGGCACAAGTCATCAGTTTCCTTAGAGAGCAAATATGAAGCTATAGGGCAC
AAAATGGAGCTTTGGTCGATCAGGTTGTCTTTTTGAAATGTGGTTGCCAGTTTCTTAAATTTTCAGATAACTACTATTTT
GATATGATTTACTTCGTTGCTAGAATGTTGCTTTGCTAGCTCTAGGCTCTACGCTTCTACAGTCTGATATTTGGAATTCT
TATTCCTACATGTAGCAAAGCTTGTATACTGACTCTATTGAGTATTTCCTTTTGCACCAGGAATTCTTGTTCAGCTTCCA
TTGCCCAAGCATATCAACGAAGAAAATATCTTGAACCAGATCTCCATTGAGAAAGATGTCGACGGCTTTCATCCTTTGAA
CATTGGCAAGCTCGCAATGAAAGGCAGAGATCCACTGTTTGTACCTTGCACGCCAAAGGTATCGATTGCAAC-CTTAAGC
ACGGCATTTCTCAACACTGGTTTGACTGCAGTTTTCATTTGTAACATCTTTGCCTTCATGTCTTTGTTCACTTATATGAA
GGGATGCATGGAGCTCCTGTCACGAAGTGGCGTCACTGTAAAAGGAAAACACGCAGTTGTGGTTGGGCGTAGCAACATTG
TGGGTTTACCAGTATCCCTTCTCCTTCTGAAAGCGGACGCAACCGTGTCGATCGTGCATTCACGGACCCCAAATCCCGAA
ACAATTGTCCGTCAAGCAGACATTGTCATTGCAGCAGCTGGCCAGGCCATGATGGTACATTATTCTGCGGCGAGAAGCCC
ACCCTATTTTATGGTG----TTGCCTTAATTCTGACTGCTGTGTTCTCTTGGCTGTTAGATCAAGGGAGACTGGATCAAA
CCAGGCGCGGCGGTCATCGACGTCGGGACAAACTCCATCGACGACCCAACCAGGAAGTCTGGGTACAGACTCGTTGGCGA
TGTGGATTTCTCGGAGGCGAGCAAGGTCGCGGGTCACCTGACTCCGGTCCCCGGAGGCGTCGGGCCGATGACCGTGGCGA
TGTTGCTGAAGAACACGGTGGACGGCGCCAAGAGGGGTATAGTCAGCTGATTTGCTGCGTGATTTGGTAATGTGGGGATG
ATGTTGTAACTGGGTGCCTAGACTAAAATCGGTTCCCCATTTTGTCATGGCTTACGCTATTTCGAGATCAATAAACGACG
CTCAGTAGCTCACCAGTTGGGGTGTCTTTTTTTTCTTTTGGCAAACTAAAACCCTGCTTTGGCTGGTGCTCTG-------
--CGCAGTCGCCGCTGGCGAGGCAGGGACGAAGCAAATCCAGATGCGCTCGAGATAGAGTAGATGTGGCCTCTGAGCACC
TCTCTGCTCAGCAACCACACACTGAAGCCTGAAGAAACCACGGGAGCTGATTAACCCCTTGCACGGGCACAAGGCACCGC
ACGTGGATAAGGCGATTTGGCGGTGGTGGCCGCCTGGTCGGCGGTACGTTCGGCTGGGGAAAAAGAAGAAGATGG---GG
TGTAG---------------------------------------------------------------------------
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>SNPs
SSS------S-S----S----S-------------S---------------S-----S--S-------------------
----S-S---------------------------SS-----S-----S------S-------------------------
----------------SS-----------S------------------------------------S---------S---
-------------S---------------------SS-----S---------------S----S----------------
-------------------S---S---------------------S-----S-SSSSSSS-SS-SSSS-------S----
-----------------------------S--------------------------------------------------
---S-------------------------------------------------------------------------S--
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----------------------------------------S------------S---SSSSSS-----------------
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-----------------------------------------------------------------------------SS-
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS------------S----------------------------------------
-------------------------------------------------------S-----------------S-S----
-----------S--------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------------------------------------S-------------------------------------
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----S-------------------S-S--S------------S------------------------------S------
S-------------------S----------------S-----S--------SSSSS----------SS-S---------
------------------------S-------------S-------S----S-------SS-------------------
------S----S--------------S-S---------------------------------------------------
-------------------------SS-----------------------------------------------------
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--------------------------------------------------------------------------------
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---S----------------------------------------------------------------------------
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-------------S------------S---------------------------------------S-------------
-------------------------------------------S----------------------S-------------
--S-----------------------------------------------------------------------------
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------------S---------------------------------------------------------S---------
-------------------------------------------------------------S------------------
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----------------------------------------S---------------------------------------
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--------------S-----------------------------------------------------------------
--------S-----------------------------------------------------------------------
------------------S-------------------------------------------------------------
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-----------------S--------------------------------------------------------------
---S-----------------------S--------------------------------------------S-------
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----------------------------------------------SS--------------------SS--S-SSSS--
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-----------------S-------------------S--------------------S--S--------S---------
--------------------SSS-S-SSS-SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S------------
---------------S-----------------------------------------------------S----------
------------S---
>forward_377
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AACTTCAACCCAGAGGCCAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_3094
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------GTGAGCCTTTGTGGAGGTGA-------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>forward_382
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------CAACCCAGAGGCCAGAAGTT------------------
--------------------------------------------------------------------------------
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>reverse_3097
--------------------------------------------------------------------------------
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--------------------------------------------------------AGCCTTTGTGGAGGTGATGC----
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>forward_3095
--------------------------------------------------------------------------------
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-----------------------------------CTAGTTGCGCTCGAGATGGT-------------------------
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>reverse_4441
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----------------------------------------TACCGTGTCGATCGTGCATT--------------------
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----------------
>forward_3096
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------------------------------------TAGTTGCGCTCGAGATGGTG------------------------
--------------------------------------------------------------------------------
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>reverse_5033
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACCCTACA
TACGCAGTCGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
