>input_sequence_34637
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-------------------------------------------------------------------ATGGCGGTAGCTG
GAGCCGGGGCAGCGTATCGCTT------CCACCCGCACGGCGCCGGCTTCGGCCGCTCGATGGCGTTTCCCCCGCCGCCG
GGATCCGGCTGCCCCTACAGCTCCGGAGCCTCGTTGAGCTCTGCCGCCTTCGGTGCGGCCACCGGGCCCGGGGTGCTTCA
GCAGGAGCTGGACGTCCTTGACTACTTGTCCGACGACGGCGGGGTGCCCGGCACGGCCGGCGCGCCGCTGCCGGTTGAGG
CGGCGGTCGTGCCGGATGTTGGCTACTGTGATCATACGAGGTGAGTTTATATGATTCAGTTCCTGCATGCCAAGAAGACC
CA-AGATACACATTGTGATGTGAATCAAGTCGCATGTATACACAAACACCAAGAGCGTGCA-AGTTTTGATCTGATCGGT
TTGGGGATTGTTCTGGGCATAAATTTCAGTAGGGCGGCCGCGGTGGCGGCGAGCGGCAAGATCGCGTTCCGGACTAGGTC
GGAGGAGGAGATACTGGAAGACGGCTACAAGTGGAGGAAGTACGGCAAGAAGTCTGTCAAGAACAGCCCTAACCCAAGGT
ATCCAAAACGAACGAATTCATTCACTTTTCTATAGATCATCAGAT---------------TTGGGTTGGAAAAGTTTGGC
TTGGGGTTGCAGGAAGGGATTAATTGGCATGTACTATATAGCTCTCCTCATTTACTCAAGTGTGATTGACCATAA-TTTG
GGTGAAATCGCTAAAATTTTGATGAGTTTCTTTCTCCAGTTCTCTCCCATCCCGTGGTTCATGATTTCTAGCTGGTAGTT
TCA-TGGCCT-AGTTTCTAGGTCAGCTGGTATGGATCAGGCAGATTCTGTAGCTGGTGGACCAATTCTGTTGCATTTTGC
TTGGTTCTTGCTTGGATAAACTTCCTTAAGAAAGGAA-AATCTTGG-CTAGCTTGTCGATGGACGACCGTTTATAGGTT-
-------ATTTATTTGTTCTTATTATTAGTCCATCCAATCTACGTTTAGATTCGTGACTTTAGTTTGATGATGCTGGACC
CAAGTTCCTTTTTAACAGGGAGTCGTTTTTTTTTAAACTAGGACAGGGAGTCGTTTTGGGATGTGACCAATTAAAGGGAA
ACGTATTGTATACGATGAGATCTAGTGTTTGAAGTAGCTAGGAAAAAAGATGATGAATTCTCGGCAAAAAAGAAAA-GAA
GATGAATTCAAGGTCTCAATTTGCTATTCTTCTGTCGATCCAGAAATCCCTGTTTGTTAAGCCGTCTAAGATGTACAATC
AAATGTAAATTGCTCAAGAAATCCTTATCCTCGCTCGCTTGAGTTGTACAATATTTAATGTAAGTTGCACAAAAATATGT
GTAATTCCAGGCTAAGAAATGTGTGACTGCTCAATTGCGAAATTAGACTTTTTGAGTGTGGTTACTAAACAACAATTT--
------------------T---------------------TCAACATAAAATTTACACATACTTTCAATTGGTAACCATC
TAA-TTATTGTTGGGTTATGATCCTAAAGCTTGTAGAGTTGACCAAGGTATAAATAAATCTTGACCGGCATAGCCTTTGG
ACACTTCCATAGAAATCTCAATTTGTGCAAATTATTGCTGTCTAACATATGCGTCTAGTTCCATAATTTTATTTTGTTTT
GGGGAA--GTGTCTAGTTCTACATTGTAATGAGACAAATTGCAGTTTTATGTTTTGTGAAATTTTCATAAAACTTTTGTG
CAGCACATGGTTTCCGTTGCAT-TTTTATGATGTAATGAGCCTTGATTTTACAATGAATTTTCGAGGGGTGAACACTAAA
ATCTACCAGAAATATGTCACTAAATATTTGAATCTTCTTGTACACGTTTACCATGTCTATATAAACAAACTTACACTTGA
TCCATCAATCAGTTAGGATCTGTTGGCAAGTCTTAAATTTCCCCTATTAGTTCTTTGCCAGAAAAAACTATTACTTCTTA
TAGAGGAAAAATAACCTCTTACTTTTTCTTAGCGTAAATCCCTTGCTATGAGAGGAATGGACTAGCAAATTTCTTGCCCC
TTAGGCCCCTCAGGTCCTCATGGTCCATGGCCTCATGACAAAATCTTAGGCGCCG--TCAATAGCCTAAGATTTTATTTA
ATCTAAATTTCATTTATTATCACTGCAGGAACTACTACCGGTGTTCAACGGAGGGGTGCAGCGTGAAGAAGAGGGTAGAG
AGAGACAAAGACGACGCAAACTATGTAGTGACGATGTATGAGGGGGTTCACAACCATGCGAGCCCTGGCACAATTTACTA
TGCTGCTCAAGATCCTGCTTCAGGCCGCTTCTTTGTTACTGGGACGCATCAACTAGCTCCTTGA----------------
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>chr3A_1_TraesCS3A01G248700
GGCCGACCAGCTCCGACGGAAGAGATGACCACCACCGCCGACTGCACCGGCCAGAACAGATCCGACCGGAGGTGCCGCCG
ACGAGACCACCGGGCCCTCCATGCCGCCGCCGCCGATCTGAAGGCAGATTGCACGCCACCGCAGCCGCCGCCGCCGCCCG
AACAGAACATCATATATTTTTTCCCGGTGTATATACAGGAGATATGATAAATGACGCGCCACTTCTCACTCACACCTGTG
GTTTGGGCCACCTGTCGGTGACATATGACTGGGAATTTTATC--------------------------------------
---------TGCATGTGGCCATCGCAAAAGAATGCAAGTA---TAGATGACAACATGTGAACATCTCGCAAGCCCAGGCC
CCAAACCAAAGGAGGTGTGGGAATACATTCATTGGCAAGAAATGGGGAGAGACAACAACTAATAACAGATGGATAACAGT
ACAGAGCTATTAGAGTTTTGGTGGCAATAATAACAGATGGATACAACAAGAGCAAACTAGAGTTTTGCTGCCAAAAGGAA
AATGAAAAGAGCAAACTAGCTATAGTTGACGTTTCAAAGACTCGCCTTGACGCAGTCTCTGTTGCGAACTCATATATT--
------------------CGTCGTCGCTGTCGATCGACATTGCACACCTAACATTCCGTTGTATCCATCTCCGTTCGCCT
CGGCGAGCATCAGTAGTAGTAGGCGAAGCGTACGTGTAACCGCGCGCCTGCGATTTGTCAGAGCTGAGCCGTGC--CCCA
TGCACAAATAACGAGCCAATAGGGCCAG----------------GCAGGCAACAATTCGAAACGTGCGGGTACTGCATGC
GTCCCTCGCTCTCAC-------------------TGTCGCACATACTGCTACTTGCACAGCGTAGAGACGGCGGCCGCGC
GCGCCGAAGCTTCCGCTGAGACGGGACCAGCAGGAGGAAGCTCGCCGCGAAAGCCCGGCGCCCGAACGACGCCGCGCCGC
TATAAATATACGACGCCTCGCCCGCTTGTCGTGCTCTCTCCCCATGCACTGATCCATCGGCATACGCATGGCGGTAGCTG
GAGCCGGGGCAGCGTATCGCTT------CCACCCGCACGGCGCCGGCTTCGGCCGCTCGATGGCGTTTCCCCCGCCGCCG
GGATCCGGCTGCCCCTACAGCTCCGGAGCCTCGTTGAGCTCTGCCGCCTTCGGTGCGGCCACCGGGCCCGGGGTGCTTCA
GCAGGAGCTGGACGTCCTTGACTACTTGTCCGACGACGGCGGGGTGCCCGGCACGGCCGGCGCGCCGCTGCCGGTTGAGG
CGGCGGTCGTGCCGGATGTTGGCTACTGTGATCATACGAGGTGAGTTTATATGATTCAGTTCCTGCATGCCAAGAAGACC
CA-AGATACACATTGTGATGTGAATCAAGTCGCATGTATACACAAACACCAAGAGCGTGCA-AGTTTTGATCTGATCGGT
TTGGGGATTGTTCTGGGCATAAATTTCAGTAGGGCGGCCGCGGTGGCGGCGAGCGGCAAGATCGCGTTCCGGACTAGGTC
GGAGGAGGAGATACTGGAAGACGGCTACAAGTGGAGGAAGTACGGCAAGAAGTCTGTCAAGAACAGCCCTAACCCAAGGT
ATCCAAAACGAACGAATTCATTCACTTTTCTATAGATCATCAGAT---------------TTGGGTTGGAAAAGTTTGGC
TTGGGGTTGCAGGAAGGGATTAATTGGCATGTACTATATAGCTCTCCTCATTTACTCAAGTGTGATTGACCATAA-TTTG
GGTGAAATCGCTAAAATTTTGATGAGTTTCTTTCTCCAGTTCTCTCCCATCCCGTGGTTCATGATTTCTAGCTGGTAGTT
TCA-TGGCCT-AGTTTCTAGGTCAGCTGGTATGGATCAGGCAGATTCTGTAGCTGGTGGACCAATTCTGTTGCATTTTGC
TTGGTTCTTGCTTGGATAAACTTCCTTAAGAAAGGAA-AATCTTGG-CTAGCTTGTCGATGGACGACCGTTTATAGGTT-
-------ATTTATTTGTTCTTATTATTAGTCCATCCAATCTACGTTTAGATTCGTGACTTTAGTTTGATGATGCTGGACC
CAAGTTCCTTTTTAACAGGGAGTCGTTTTTTTTTAAACTAGGACAGGGAGTCGTTTTGGGATGTGACCAATTAAAGGGAA
ACGTATTGTATACGATGAGATCTAGTGTTTGAAGTAGCTAGGAAAAAAGATGATGAATTCTCGGCAAAAAAGAAAA-GAA
GATGAATTCAAGGTCTCAATTTGCTATTCTTCTGTCGATCCAGAAATCCCTGTTTGTTAAGCCGTCTAAGATGTACAATC
AAATGTAAATTGCTCAAGAAATCCTTATCCTCGCTCGCTTGAGTTGTACAATATTTAATGTAAGTTGCACAAAAATATGT
GTAATTCCAGGCTAAGAAATGTGTGACTGCTCAATTGCGAAATTAGACTTTTTGAGTGTGGTTACTAAACAACAATTT--
------------------T---------------------TCAACATAAAATTTACACATACTTTCAATTGGTAACCATC
TAA-TTATTGTTGGGTTATGATCCTAAAGCTTGTAGAGTTGACCAAGGTATAAATAAATCTTGACCGGCATAGCCTTTGG
ACACTTCCATAGAAATCTCAATTTGTGCAAATTATTGCTGTCTAACATATGCGTCTAGTTCCATAATTTTATTTTGTTTT
GGGGAA--GTGTCTAGTTCTACATTGTAATGAGACAAATTGCAGTTTTATGTTTTGTGAAATTTTCATAAAACTTTTGTG
CAGCACATGGTTTCCGTTGCAT-TTTTATGATGTAATGAGCCTTGATTTTACAATGAATTTTCGAGGGGTGAACACTAAA
ATCTACCAGAAATATGTCACTAAATATTTGAATCTTCTTGTACACGTTTACCATGTCTATATAAACAAACTTACACTTGA
TCCATCAATCAGTTAGGATCTGTTGGCAAGTCTTAAATTTCCCCTATTAGTTCTTTGCCAGAAAAAACTATTACTTCTTA
TAGAGGAAAAATAACCTCTTACTTTTTCTTAGCGTAAATCCCTTGCTATGAGAGGAATGGACTAGCAAATTTCTTGCCCC
TTAGGCCCCTCAGGTCCTCATGGTCCATGGCCTCATGACAAAATCTTAGGCGCCG--TCAATAGCCTAAGATTTTATTTA
ATCTAAATTTCATTTATTATCACTGCAGGAACTACTACCGGTGTTCAACGGAGGGGTGCAGCGTGAAGAAGAGGGTAGAG
AGAGACAAAGACGACGCAAACTATGTAGTGACGATGTATGAGGGGGTTCACAACCATGCGAGCCCTGGCACAATTTACTA
TGCTGCTCAAGATCCTGCTTCAGGCCGCTTCTTTGTTACTGGGACGCATCAACTAGCTCCTTGATCAAACACTGGATAAC
ATTTGGCGTGTGATTGGTCTTCCTAGAATGAAACTTAATGGAGTTGCTTGTAAAGTTGTGCAATACCTCTTTTAAGTGTA
CATGTCTCATATTTTAGAGAGTAGATCAATCTTCTCGGTTCTAGTGACATCAACAACAACATAAGGCTTGTTCACTTTTT
TCTGCTACAAAAGACGGTTGGTTCACTAAACTAAAATTTACTAGGAAGCGAAACTTGATTTTCTTCAAATTTTTATGATG
AGATTTCGGTTGAAAGTGGCTTGAATCAGATTGAAAGTTGATAAATCGTGAGTTGAAAGTTAACTTCCATGAGGTTGAAA
CCTCATTTCTTTTTCAATCAAATACCCTCCATATCTCTTGTTGTGGTAAATGAAGTCTTCACATTTCCTAAAATATTGCT
TTTGTAGTTGAAAGCCGATGTTCATGAAGATGGAACCAAACCTTATTTAGTTAAAACTTCCTAAAAACTGTTGTTTTATA
AGTTGAAAACTTCCCATTTCCTAATTAAAATGAGTTGAAATCAATGTTCATGAATTTGAAATTTAACATGTTGCGGCTGA
AATCCTAAAAAATGTGGTCGAAGTTCGACTCTTTCCATTTGGTCGGAGATGTTCTTACAGGGGCATGTCAGGTCAAAAAC
CACTCACGTCACATTGTGTGATAGGCCCCCACAATATATAGTGCATATCGGTCAATTAATTCCTTCACCTTTTGTAGGGT
TCCAAACATGTAATACATCTTTTTATTTATCGTATGTGGAATTCCAATATAACATGTATGTTTATCTCTCCTCCCCTCTT
TATATTTAATAAATACTCTGCTAAGTCACTTGAAGCATCTAAA-AATGTATGAATTAAAGAGTTACTCTCATCAAAAGGT
GGGCACGGATAGCTAATCCACTCTTTCTCCTATTGTTCTTCCCTCTCATCCTCATCTTTTTCATCTAATGAGCTTACAAT
AATTTCTTCTTTCATTGGTTCGTGC
>chr3D_166
AACATCAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTTTCTCGGTGTATATACAGGAGGTATGATAAATGACATGTCACTCCTCACTCACACAAGTG
GTTTGGGCCACCTGTCGGTGACATATGATGGGGAATTTTATCTAAAGCTTTGCTAAACTAACACATGACATACATAAGAC
ATTAGTTGTTGCATGTGGCCATCGGAAAAGAATGCAAGTAGTATAGATTACAACATGTCAACATCTGGCAAGCTCAGGCC
CCAAAGCAAAGGAG--GTGGGAATACATTCATGGGCAAGAAATGGAGAGAGA---------------------TAACAGT
TCAGAGCTATTCGAGTTTTGGTGGCAATAATAACAGATGGATACAACAAGAGCAAACTAGAGGTTTGCTGCCAAAAGGAA
AATGAAAAGAGCAAACTAGTTATAGTTGACGTTTCAAAGACTCGCCTTGACGCAGTCTCTGTTGCTTACTCATACTATAT
TCGTCGAGGCACAGCGCCCGTCGTCGCTGTCGATCGACATTGCACACCTAACATTCCGTTGTATCCATCTCCGTTCGCCT
CGGCGAGCATCAGTAGTA---GGCGAAGCGTACGTGTAACCGCGCGCCTGCGATTTGTCAGAGCTGAGCCGTGCCCCCCA
TGCACAAACAACGAGACAAGACAATAGGGCCATACGTGGGCGTAGCAGGCAACAATTCGAAACGTGCGGGTGCTG-----
--------------C-------------------TGTCGCACATACTGCTACTTGCACAGCGTAGAGACGGCGCCCGCGC
GCGCCGAAGCTTCCGCTGAGACGGGACCAGCAGGAGGAAGCTCGCCGCGAAAGCCCGGCGCCC-AACGACGTCGCGCCGC
TATAAATATACGACGCCTCGCCCGCTTGTCGTACTAGCTCCCCATGCACTGATCCATCGGCATACGCATGGCGGTAGCTG
GAGTCGGGACAGCGTATCGCTTTCGCTTCCACCCACACGGCGCCGGCGTCGGCCGCTCGATGGCGTTTCCCCCGCCGCCG
GGATCCGGCTGCCCGTACAGCTCCGGAGCCCCGTTGAGCTCTCCCGCCTTCGGTGCGGCCACCGGGCCCGGGGTGCTTCA
GCAGCAGCTGGATGTCCTGGACTACTTGTCCGACGACGGCGGGGTGCCCGGCACGGTCGGCGCGCCGCTGCCGGTTGAGG
CGGCGGTCGTGCCGGATGTTGGCTACTGTGATCATACGAGGTGAGTTTATATGACTCAGTTCGTGCATGCATGCCAAGAC
CA-AGATGCACATTGTGATGTGAATCAAGTCGCATATATGCACAAACA-CAAGAGCGTGCAGAGTTTTGATCGGATCGGT
TTGGGGATTGTTCTGGGCATAAATTTCAGTAGGGCGTCCGCGGTGGCGGCGAGCGGCAAGATCGCGTTCCGGACGAGGTC
GGAGGAGGAGATACTGGACGATGGCTACAAGTGGAGGAAGTACGGCAAGAAGTCTGTCAAGAACAGCCCTAACCCAAGGT
ACCCAAAACTAACGAATAAATTACATCAAAAAAAAACTAACGAATAAATTTAATTTTGGATTGAATTGGAAAAGTTTAGC
TCAAGGGTGCAGGAAGGGGTTAATTGGCATGGACTATAGCTCTACCCAAGT--------GTGTGATG-ACCATACGTTTG
GGTGAAATAGCTAAAATTTTAATGTGTTTATTTCTCCAGTTATCTT-----CCATGGTTCATGATTTCCAGCCAGTAGTT
TCACTGGCCT-AGTTTCTAGGTCAGCTGGTATGGACCAGCCTGATGCGGTAGCTGATGGAACAATTCTGTTGCATTTTGC
TTGGTTCTTGCTTGGCTAAGCATTCTTAAAAAAGGAAGAAAAAAATCCTAGCTTGTTGATGGACCCTTTAGGTTTTCCCA
AATGATAATTTATTTGTTCTTATAATTAGTTCATCAAATCCACATTTAGATCCGTGACTTTAGTTCGATGATGTTTGACC
CGATTT-----------------------------------------GA-TCGTGTTTGGATGTGACCAATTAAAGAAAA
ACGGATTGTATATGATGAGATTTAGTGTTTGAAGTAGCTAGGAAAAAAGATGATGAATTCTCGGCAAAAAAGAAAAAGAA
GATGAATTCGAGGTCTCAATTTGCTATTCTTCTGTCGATCCAGAAATCCCTGTTTGTTAAGCCGTCTAAGATGTACAATC
AAATGTAAATTGCTCGAGAAATCCTTATCCTCGGTCGCCTGAGTTGTACAATATCTAATGTAAGTTGCACAAAAATATGT
GTAATTTCAGGCTAGGAAATGTGTGACTGCTCAATTGCGAAATTAGACTTTTTGAGTGTTCTTACTAAACAACAAATT--
------------------TTCATCCGTTTCGAAAAAAAATTCAACACAAAATTTACACATAATTTCAATTGGTAACCATC
TGAGTTATTGTTGGGTTCTGATCCTAAAGCTTGTAGAGTTGACCGAGGTATAAATAAATCTTGATCGGCATAGCCTTTGG
ACATCTACATAGAAATCTCAATTGGTGCAAATTATTGTTGTCTAACATATGTGTCTAGTTCCACGATTTTATTTTATTTT
GCGGAA--GTGTCTAGTTCTACATTGTAATGAGACAAATTGCTGTTTTATGTTTTGTGAAATTTTCGTAAAACTTTTGTG
TAGCACATGGTTCCCGTTGCATCTTTTATGATGTCATGAGCTTTGATTTTACAATAAATTTTTGAGGGGTGAACACTAAA
ATCTACCAGAAATATGTCACTAAATATTTGAATCTTGTTGTACACGTTTACCATGTCTATATAAACAAACTTACACTTGA
TCCATCAATCAGTTAGGATTTGTTGGCAAGTCTTAAATTTCCCCTATTAGTTCTTTGCCAGAAACAAATATTACTTCTTA
TAGAGGAAAAATAACCTCTTACTTTTTCTTAGTGTAAATCTCTTGCTATGAGAGCAATGGGCTAGCAAATTTCTTGCTTC
TTAGGCCCCTCAGGACCTCATTGTCCATGGCCTCACAACAAAGTCTTAGGTGCGTCCTCAATAGCCTAAGACTTTATTTA
ATCTAAATTTCATTTATTATCACTGCAGGAACTACTACCGGTGTTCAACGGAGGGGTGCTACGTGAAGAAGAGGGTAGAG
AGAGATAAAGACGACGCAAACTATGTAGTGACGATGTATGAGGGGGTTCACAACCATGCGAGCCCTGGCACAGTTTACTA
TGCTGCTCAAGATCCTGCTTCGGGGCGCTTCTTTGTTACTGGGACGCATCACCTAGCTCCTTGATCAAACACTGGATAAC
ATTTGGCGTCTGATTGGTCTTCCTAGAATGAAACTTAATGGAGTTGCTTGTAAAGTTGTGCAATACCTCTTTTAAGTGTA
CATGTCTCATATTTTAGAGAGTAGATCAATC-------------------------------------------------
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>chr3B_441
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----------TAGAGTTTTGGTGGCAATAA---CAGATGGATACAACAAGAGCAAACTAGAGTTTTGCTGCCAAAAGGAA
AAGGAAAAGAGCAAACTAGTTATAGTTGACGTTTCAAAGACTCGCCTTGACGCAGTCTCTGTTGCCTGCTCATATATTCG
TCGTCAAGGCACGGCGCCCGTCGTCGCTGTTGATCGACATTGCACACCTAACATTCCGTTGCATCCATCTCCGTTCGCCT
CGGCGAGCATCGGTAGTA---GGCGAAGCGTACGTGTAACCGCGCGCCTGCGATTTGTCAGAGCTGAGCCGTGC--CCCA
TGCACAAATAACGAGCCAATAGGGCCAG----------------GTAGGCAACAATTCGAAACGTGCGGGTACTG-----
--------------CATGCGTCCCTCGCTCTCACTGTCGAACGTACTGCTACTTGCACAGCGTAGAGACGGCGCCCGCGC
GCACCGAAGCTTCCGCTGAGACGGGACCAGCAGGAGGAAGCTCGCCGCGAAAGCCCAGCGCCC-AACGACGTCGCGTCGC
TATATATATACGACACCTCGCCCGCTTGTCGTGCTCTCTCCCCATGCACTGATCCATCGGCATACGCATGGCGGTAGCTG
GAGCCGGGGCAGCGTATCGT------TTCCACCCGCACGGCGCCGG---------CTCGATGGCGTTTCCCCGGCCGCCG
GGATCCGGCTGCCCGTACAGCTCCGGAGCCCCGTTGAGCTCTCCCGCCTTCGGTGGGGCCACCGGGCCCGGGGTGCTTCA
GCAGCAGCTGGACGTCCTGGACTACTTGTCCGACGACGGCGGGGTGCCCGGCACGGTCGGCGCGCCGCTGCCGGTTGAGG
CGGCGGTCGTGCCGGATGTTGGCTACTGTGATCATACGAGGTGAGTTTATATGATTCAGTTCGTGCATGCTAAGACACTC
AAGAGATACACATTGTGATGTGAATCAAGCCGCATATAGATGCAAACACCGAGAGCGTGCA-CGTTTTGATCGGATCGGT
TTGGGAATTGTTGTGGACATAAATTTCAGTAGGGCGGCCGCGGTGGCGGCGAGCGGCAAGATCGCGTTCCGGACGAGGTC
GGAGGAGGAGATACTGGACGATGGCTACAAGTGGAGGAAGTACGGCAAGAAGTCTGTCAAGAACAGCCCTAACCCAAGGT
ACCCA----------------------------AAACTAACGAATAAATTTAATTTTGGATTGAATTTGAAAATTTTAGC
TCAAGGGTGCAGGAAGGGGTTAATTGGCATGGACTATAGCTCTACTCAAGT--------GTGTGATTTACCATACGTTTG
GGTGAAATAGCTAAAAATTTAATGTGCTTATTTCTCCAGTTATCTT-----CCATGGTTCATGATTTCCAGCCAGTAGTT
TCA-TTGCCTTAGTTTCTAGGTAAGTTATTTTGGATCAGCCTGATGCGGTAGCTGATGGAGCAATTCTGTTGCATTTTGT
TTGGTTCTTGCTTGGCTAAGCATTCTTAAAAAAGGAA-AAAAAAATCCTAGCTTGTTGATTGACCATTTAGGTTTTCCCA
AATGATAATTTATTTGTTCTTATTATTAGTTCATCAAATCCACATTTAGATCCGTGACTTTAGTTCGATGGTGTTGGACC
CGATTT-----------------------------------------GAGCCGTGTTTGGATGTGACCAA--AAAGAGAA
ACAGATTGTATACAATGAGATCTAGTGTTTGAAGTAGCTAGGAAAAAAGATGATGAATTCTCGGCAAAAAAGAAAAACAA
GATGAATTCGAGGTCTCAATTTGCTATTCTTCTGTCGATCTAGAAATCCCTATTTGTTAAGCCGTCTAAGATGTACAATC
AAATGTAAATTGCTCGAGAAATCATTATCCTCGGTCGCCTGAGTTGTACAATATCTAATGTAAGTTGAACAAAAATATGT
GTAATTCCAGGCTAAGAAATGTGTGACTGCTCAACTGCGAAATTAGACTTTTTGAGTGTTCTTACTAAACAACATTTTTT
CATCCGTTTCAAAAAAAAT---------------------TCAACATAAAATTTACACATAATTTCAATTGGTAACCATC
TGAGTTATTGTTGGGTTCTGATCCTAAAGCTTGTAGAGTTGACCGAGGTATAAATAAATCTTGATCGGCATAGCCTTTGG
ACATCTCCATAGAAATCTCAATTGGTGCAAATTATTGTTGTCTAACATATGTGTCTAGTTCCACAATTTTATTTTATTTT
GCGGAAGTGTGTCTAGTTCTACATTGTAATGAGACAAATTGCAATTTTATGTTTTGTGACATTTTCGTAAAACTTTTGTG
CAGCACATGGTTTCCGTTGCATCTTTTATGATGTCATGAGCTTTGATTTTACAATAAATTTTTGAGGGGTGAACACTAAA
ATCTACCAGAAATATGTCACTAAATATTTGAATCTTCTTGTACATGTTTACCATGTCTATATAAACAAACTTACACTTGA
TCCATCAATCAGTTAGGATTTGTTGGCAAGTTTTAAATTTCCCCTATTAGTTCTTTGCCAGAAAAAACTATTACTTCTTA
TAGAGGAAAAATAACCTCTTACTTTTTCTTAGCGTAAATCCCTTGCTATGAGAGGAATGGAATAGCAAATTTCTTGCTTC
TTAGGCCCCTCATGTCCTCATTGTCCATGACCTCATGACAAAATCTTAGGTGCGTCATCAATAGCCTAAGACTTTATTTA
ATCTAAATTTCATTTATTATCACTGCAGGAACTACTACCGGTGTTCAACGGAGGGGTGCAGCGTGAAGAAGAGGGTAGAG
AGAGACAAAGACGATGCAAACTATGTAGTGACGATGTATGAGGGGGTTCACAACCATGCGAGCCCTGGCACAGTTTACTA
TGCTTCTCAAGATCCTGCTTCGGGTCGCTTCTTTGTTACTGGGACCCATCACCTAGCTCCTTGATCAAACATTGGATAAC
ATTTGGCGCCTGATTGGTCTTCCTAGAATGAAACTTAATGGAGTTGATTGTAAAGTTGTGCATTGCCTCTTTTAAGTGTA
CATGTCTCATATTTTAGAGAGTAGATCAATCTTCTTGGTTCTAGTGACATCAACAACAACATAAGGCTTGTTCACTTTTT
TCTACTT-AGAGGACGGTTGGTTCACTAAACTAAAGTTTACTAGGAAGCGAAACTTGATTTTCTTCAAATTTCTATGATG
AGATTTCGGTTGAAAATGGCTTGAATCGGATTGAAAGTTGATAAATCGTGAGTTGAAAGTTGACATCCATGAAGTTGAAA
CCTCATTTCGTTTTCAATCAAATACCCTCCATATCTCTTGTTGTGGTAAATGAAGTCTTCACATTTCCTAAAATATTGCT
TTTGCAGTTGAAAGTCGATGTTCATGAAGATGGAACCAAACCTTATTTAGTTAAAACTTCCTAAAAACTTTTGTTTTGTA
AGTTCAAACCTTCCCATTTCCTAATTAAAATGAGTTGAAATCAATGTTCATGAATTTGAAATTTAACATGTTGCAGCTAA
AATCCTAAAAAATGTGGTTGAAGTTCAACTCTTTCCATTTGGTTGGAGATGTTCTTACAGGGGCATGTCAGGTCAAAAAC
CACTCACTTCACATTGTGTGATAGGCCCCCACAATATATAGTGCATATCGGTCAATTAATTCCTTCACCTTTTGTAGGGT
TCCAAACATGTAATACATCTTTTTATTTATGGTATGTGGAATTCCAATATAACATGTATGTTTATCTCTCCTCCCCTCTT
TATATTTAATGAATACTTTCCTAAGTCACTTGAAGCATTTAAATAATGTATGAGTTAAAGAGTTACTCTCATCGGAAGGT
GAGCACATATAGCTAATCCACTCTTTCACCTTTTGTTCTTCCCTCTCCTCCTCATCTTTTTCATCTAATGAGCTTACAAT
AATTTCTTCTTTCATTGGTTCATGC
>chr3D_3430
GTAGTG--------------------------------------------------------------------------
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---------------------------AATCTTCTCGGTTCTAGTGACATCAACAACAACATAAGGCTTGTTCATTTTTT
TCTGCTACAGAGGACGGTTGGTTCACTAAACTAAAGTTTACTAGGAAGCGAAACTTGATTTTCTTCAAATTTCTATGATG
AGATTTGGGTTGAAAGTGGCTTGAATCAGATTGAAAGTTGATAAACCTTGAGTTGAAAGTTAACGTCCATGAAGTTGAAA
ACTCATTTGTTTTTCAATCAAACACCCTCCATATCTCTTGCTGTGGTAAATGAAGTCTTCACATTTCCTAAAATATTGCT
TTTGCAGTTGAAAGCCGATGTTCATGAAGATGGAACCAAACCTTATTTAGTTAAAACTTCCTAAAAAA-TTTGTTTTATA
AGTTGAAACCTTCCCATTTCCTAATTAAAATGAGTTGAAATCAATGTTCATGAATTTGAAATTTAACATGTTGCAGCTGA
AATCCTAAAAAATGTGGTTGAAGTTCAACTCTTTCCATTTGGTCGGAGATGTTCTGACAAGGCCATGTCAGGTCAAAAAT
CGCTCACGTCACATTGTGTGATAGGACCCAACAATATACAGTGCATATCGGTCAATTAATTCCTTCACCTGTTGTAGGGT
TCCAAACATGTAATACATCTTTTTATTTATCGTATGTGGAATTCCAATATAACATGTTTGTTTATCTCTCCTCCCCTCTT
TACATTTAATAAATACTTTCCTAAGTCACTTGAAGCATTTAAACAATGTATGAGTTAAAGAGTTACTCTCATCAAAAGGT
GGGCACGAATAGTTAATCCATTGTTTCTCCTTTTGTTCTTCCCTCTCCTCCTCATCTTTTTCATCTAATGAGCTTACAAT
AATTTCTTCTTTTATTGGTTCG---
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS-------S-----------------S-------------SS-S----S-----------SS---
----------------------------SS--------------------------------------------------
------------------------S-----------------------S---------S-------S------S------
-----S--------SS----------------S------------S------SSSSSSSSSSSSSSSSSSSSS-------
S-------------------------------------------------------------------------------
-------------------S---------------------------------------------SS-------------
--------------------------------------------------------------------------------
------------------SSS-----------------------------------------------------------
---------------------------------------------------------------------------SSSSS
SSSSSSSSSSSSSS-----------------------------------------------------------S------
---------------------------------------------------------------S-------S--------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------S---------------S-----------S-------------------------------------
----S-------------S-------------------------------------S-----------------------
--------------------------------------------------------------S-------S-----SSS-
-----------------------------------S------------------------------------S-------
--------------------------------------------------------------------------S-----
------------------S--S----------------------------------------------------------
-S-------S-------SS---SSS-SSSSS-S-S-SS-S-SS--------------------SS------------S--
-SSS--S-----------S------------S------SSS--SS--SSS-SSSSSSSS--------S------S-----
--------S-----------S---S----S-----------S---SSSSSS--S--------------S---SS------
---------------------------------------S-S---S-S-------S----S-------------------
---------------S---S-S-S-----S----------SSSSSS----------S-------S-SSSSSSS-SSSSS-
------------------------------S----S----S--S-------S-------------S-------S------
-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S------------------S---
---S----------------------------------------------------------------------------
---------S----------------------------------------------------------------------
---------------S-----------------S----S---------------S-------------------------
-----------------------------------------------------------SS-------------------
-------------------------------------------------------------S------------------
-S---------------S--------------------------S-------------------S---------------
---SS------------------S-------------S-------------S-----------S-----------S----
-S----------------------------------------------------------------S-------------
----------------------------------S------S-------------S------S-----------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------------------------SS-
---------------------S----------------------------S--SS----------------S--------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
---------------------S--S--------------------------S----------------------------
---------S----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S-S-----------------------S------------------------------------S-------
----------------------------------------------------------------S-------S-------
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----S----------------------------------------------------------------S----------
--------S-----------------------------------------------------------------S-----
------------------S-------S-----------------------------------------------------
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-----------------S-S------------------S--------------S--------------------------
-------S-----------------------S---------------S--------------------------------
-------------------------
>forward_36
----------------CGGAAGAGATGACCACCACC--------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_2046
--------------------------------------------------------------------------------
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---------------------------------------------GCTAGCTTGTCGATGGACGA---------------
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-------------------------
>forward_37
-----------------GGAAGAGATGACCACCACCG-------------------------------------------
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-------------------------
>reverse_2146
--------------------------------------------------------------------------------
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-----------------------------------------------------------------TGATGATGCTGGACC
CAAGT---------------------------------------------------------------------------
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-------------------------
>forward_237
--------------------------------------------------------------------------------
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---------------------------------------------------------GCCACTTCTCACTCACACCT---
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>reverse_2202
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-----------------------------------------GACAGGGAGTCGTTTTGGGA-------------------
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>forward_2168
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--------------------------------------------------------------------TGATGCTGGACC
CAAGTTCC------------------------------------------------------------------------
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-------------------------
>reverse_3462
--------------------------------------------------------------------------------
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---------------------AGGCCGCTTCTTTGTTACTG---------------------------------------
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-------------------------
>forward_2169
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---------------------------------------------------------------------GATGCTGGACC
CAAGTTCCT-----------------------------------------------------------------------
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-------------------------
>reverse_3465
--------------------------------------------------------------------------------
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------------------------CCGCTTCTTTGTTACTGGGAC-----------------------------------
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-------------------------
>forward_2171
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TGCTGGACC
CAAGTTCCTTT---------------------------------------------------------------------
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-------------------------
>reverse_4107
--------------------------------------------------------------------------------
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--------------------------GACTCTTTCCATTTGGTCGGAG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
