>input_sequence_34470
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----------------------------------------------------------------ATGGAGGTGATGGATG
TGGGCATTGGGATGGAGCGCAGGAAGAGGCCTAGGAAAGCGAGTGGAAAAGCTGCCGAAGCAGAGGCGGCGGCGGCGGCG
GCTGCGGAAGCTGCTAGGGCGGCGGCGGAAGAAGAAGCTGCTG---------------GGTGGGAGGAGTTCGAGAAACG
GATGGCAAACCCTCCGACGGCCGAGGAGCTGCGCGCGAGCGAGGAGAGCTGGGAGAAGTTCTGCAGCGAATCGTGGGAGA
GGTTCCGCGATAGGTGGATCGATGTCTGGTCGCACGGCATGATTCCCTTCGACGCCGTCAGTAAGCGGCCAGTGCTGCCA
ATATC-TTTCAGTTTCCTTCTTA----CCAGGATCCTTGGTTGCTCACGTAATATACGTATA------------------
-----ATTGTTGGGTGCAGCGCAAATCCCCTGCATGCGTTTCACGGACGCCAACTTGAGGCACCCTGATTTCCGGAACAT
CCTCTATCCGGAGGACACACTGCAGATCGTCTCCGTCCAAGTCAAGGACCTTACTGGTGGCTTGCAATGGCCCCTCGATG
TCTACGGTGTCGTCGCCGTACGCGATGGGGTGGATCGCTTGCGAAATGTGGTTTTCAGCCGTGAAAGGGACGACTGCCAA
AGCATCAATGAGCAGGTTCGTGAAAACTGTATTTTCCCACTATAGGACATGGATTGATTAGAATAGAGAAGTAGCAATGG
GAACATAATTCACTATCTTTTTGTGCTTCACCAAACATTCATTA----TCAAACTTGGTCTTACTAGTGTAGTGTATGTG
TATCTAGAATCAAGTCATAAGCTTTACGACTCATGCCTACAAACA-----------------------------------
-------------------AACTCGAGTTTACATAGATGTAAATCTGCTAGTAGCTTTTGCCTAATGGTTTCGAAGATAA
CAGCATCTCGAAGCCATACATGGATCAGTAGGCAAAGTTCCAGCGGATT-TTTTTTACATGATGCATATGTCCAGTTTTT
GCAAAAAAATAAAATAAAAAAAATCTATGTAATGCCTCTGTTTGCAGCGCATTTGCAGGTCTTTAAACTGGACGTGCTTT
CCTGTGCTTGAGTATACAGATTTCATACTATTATTCTTGTTATTTTGTACTCCCTCCATTCAATATAAGTCATTTTAGAG
ATTTCAATACGGACTACATACAGATGTACTTCCTCCGGTCTTTTTTAGTTTGCATATAAGATTTGTCTGAAGTCAAACCT
CGTAAACTTTGACCAAGTTTATAGAAAAATATACTAGCATTCATAATGTGAAATCAACAACATTAAATGCGTCATGACTT
TAATTTTCATATTATATAAATTTAGAAATGTAGATGTTAATATTTTTTCATATAAATATGGTCATACTTTATGAAGTTTG
ACTTCAGACAATTCTTATATGCAGAGTAAAAAGGACCGGAGGGAGTATATAGACGTAATTTAAAGTGTAGATTCATTCAT
TTTGCTCCGTATGTAGTCCATATTGGAATCTCTAAAATGACTTATATTTAGGAACAGAGCGAGTAGCAGTATAATCCATC
ATTGTTTGATGAATTGAATATATTTCTCTGCGGTCTTATTGTTGATGAACAGAACTTTTTGTTACTTTTACTTGTAATTA
GTTAATAGATGAATTACGTTCCAGTGAATACATTCTCATTTTTTATCAACATTTGGTGGATTGAATACTTTCCATTG-GA
GTCTTAATTATTGATGAAAGACAAATATATTAC----ATCGTTTACTTGATTAGTTAATTGATGCATACAGGGTTCATAC
CTAACACTGACAGGTCCTAGTCGCGGTGTTGTCATGTCGCATGATAACTCACATTTGGAGGTTATGCTCAAAATGAAGGG
TACTACTGAATATGAAGATAAAGATTTAAACAAATTTGTGGATTCATACAGGCTGGGCTGCTTCCTTCCTATTGAGTACA
CTAGCAAGTTTTGCACAGTGGAGATGCAATATTACACTGCTTTTAGTTCCGTGGAGGCCACGATTTTTGTTCGAGTCTTT
AAAGGGCGATGGCCACAAGGTTTTCGAGGTGTACTAACTGCTAGTACCTTGAAGCAAAGAGACGTCCAAATCTCACTGCT
GCAACTTAATGATGATGAATTGTCTGTTAATGCTGATGGCTTTGTTAAGCTATCAAGACGTGTTATTTGTGTTGAAAAGG
ATGGGAAGCTGGGGCTGTCTATCTTCCAACAGGGTGATGGTGGGAAAGAAGGCCGAGCGATAGCTGGTATTTGGATTGAA
GCTGAAGATGCCGGAAAAGCCACTCATTACATGCCTGTGGAGGCGCTCGACTGCTGGATGGAAGTTACAGTTGCCTGGTC
TCTTTTCAGACTTTGA----------------------------------------------------------------
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----------
>chr3D_1_TraesCS3D01G515800
GGTAAAAGGGGTTGAGCTTAGCAACCTAGTAAGAACCAACACTAAACTGTGAGGCGACCCATCACTTAAAACTTTAGTAT
TAAGTTTTCCTTTGATTTTTCATAACAAAGGGTTTCTAGACTCTGGATTGAGGCAGGAGTAGGATCGAATAGTTGTAATC
-TTTTTAAAATGCATTAACATTTTTGGAAAAAGGTATGAATGTTTTTAAAATCACACAAATATTTTATTAAACACACATG
CATTTGTT-ATTTTTTCAAAAAGTAATTTAGTTACATGGACACTTTAAAAAATGCAAGAAGTTTTTTAGTTGCATTA-TA
TTTTTATACGTGTTTTGTTTGCTACAAAAAATACAATATTTTGACATTTTCTTTTAACTGTATGTACTCCATCCATTTTT
ATTTACTCTACTAATTAACTTTATCTTAAGTTAAAATTTGTAAACTTTGACTAAAATTATGAAAGTAATATTAACATCTA
AAATATCAAATCAATATCATAGATATATCATTAAATATATTTTTAATATATTATATAATTTTTATTATAAATGTTCATTT
AACTTTGAATAAACATTGTCAAACTTTATAAATTTAAACTGAAAAAGATATAGTAAGTAGTAGTAAATAAAAAC------
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--------------------------------AGAG--------------------------------------------
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-----------------GGAGTATTTTTAACTAGTGAAATTAAAATATCATTTTAATTTTACTTTAGGGGAAACCATAAT
TTTATCTTTTTTGAGAGAAACATAATTTTAACCGTTCGCTTTTCTTTCTATTTACGGATTATGGAGGAGCCAGCTTTTAT
TTATTTTTGAGTAAATCGGAGGAACCGGCTAGTGGGTCGGTTCTTTGCTAGGCCCATAAAAGAAGAAGCGCAGACCATGT
GGGTGGGTTTGGCCCTGGAGTATTTTACTATTTAGACAACGCGACCCCAATCCGGTCTAGGGTTCTTACCGTTTTTTGCG
ATACTAAAAA-T-TCAGATTGCGGACGGCGGTGGCGAGGTTAGATCGGTTGTTCGGAAGAGGAGATGGAGGTGATGGATG
TGGGCATTGGGATGGAGCGCAGGAAGAGGCCTAGGAAAGCGAGTGGAAAAGCTGCCGAAGCAGAGGCGGCGGCGGCGGCG
GCTGCGGAAGCTGCTAGGGCGGCGGCGGAAGAAGAAGCTGCTG---------------GGTGGGAGGAGTTCGAGAAACG
GATGGCAAACCCTCCGACGGCCGAGGAGCTGCGCGCGAGCGAGGAGAGCTGGGAGAAGTTCTGCAGCGAATCGTGGGAGA
GGTTCCGCGATAGGTGGATCGATGTCTGGTCGCACGGCATGATTCCCTTCGACGCCGTCAGTAAGCGGCCAGTGCTGCCA
ATATC-TTTCAGTTTCCTTCTTA----CCAGGATCCTTGGTTGCTCACGTAATATACGTATA------------------
-----ATTGTTGGGTGCAGCGCAAATCCCCTGCATGCGTTTCACGGACGCCAACTTGAGGCACCCTGATTTCCGGAACAT
CCTCTATCCGGAGGACACACTGCAGATCGTCTCCGTCCAAGTCAAGGACCTTACTGGTGGCTTGCAATGGCCCCTCGATG
TCTACGGTGTCGTCGCCGTACGCGATGGGGTGGATCGCTTGCGAAATGTGGTTTTCAGCCGTGAAAGGGACGACTGCCAA
AGCATCAATGAGCAGGTTCGTGAAAACTGTATTTTCCCACTATAGGACATGGATTGATTAGAATAGAGAAGTAGCAATGG
GAACATAATTCACTATCTTTTTGTGCTTCACCAAACATTCATTA----TCAAACTTGGTCTTACTAGTGTAGTGTATGTG
TATCTAGAATCAAGTCATAAGCTTTACGACTCATGCCTACAAACA-----------------------------------
-------------------AACTCGAGTTTACATAGATGTAAATCTGCTAGTAGCTTTTGCCTAATGGTTTCGAAGATAA
CAGCATCTCGAAGCCATACATGGATCAGTAGGCAAAGTTCCAGCGGATT-TTTTTTACATGATGCATATGTCCAGTTTTT
GCAAAAAAATAAAATAAAAAAAATCTATGTAATGCCTCTGTTTGCAGCGCATTTGCAGGTCTTTAAACTGGACGTGCTTT
CCTGTGCTTGAGTATACAGATTTCATACTATTATTCTTGTTATTTTGTACTCCCTCCATTCAATATAAGTCATTTTAGAG
ATTTCAATACGGACTACATACAGATGTACTTCCTCCGGTCTTTTTTAGTTTGCATATAAGATTTGTCTGAAGTCAAACCT
CGTAAACTTTGACCAAGTTTATAGAAAAATATACTAGCATTCATAATGTGAAATCAACAACATTAAATGCGTCATGACTT
TAATTTTCATATTATATAAATTTAGAAATGTAGATGTTAATATTTTTTCATATAAATATGGTCATACTTTATGAAGTTTG
ACTTCAGACAATTCTTATATGCAGAGTAAAAAGGACCGGAGGGAGTATATAGACGTAATTTAAAGTGTAGATTCATTCAT
TTTGCTCCGTATGTAGTCCATATTGGAATCTCTAAAATGACTTATATTTAGGAACAGAGCGAGTAGCAGTATAATCCATC
ATTGTTTGATGAATTGAATATATTTCTCTGCGGTCTTATTGTTGATGAACAGAACTTTTTGTTACTTTTACTTGTAATTA
GTTAATAGATGAATTACGTTCCAGTGAATACATTCTCATTTTTTATCAACATTTGGTGGATTGAATACTTTCCATTG-GA
GTCTTAATTATTGATGAAAGACAAATATATTAC----ATCGTTTACTTGATTAGTTAATTGATGCATACAGGGTTCATAC
CTAACACTGACAGGTCCTAGTCGCGGTGTTGTCATGTCGCATGATAACTCACATTTGGAGGTTATGCTCAAAATGAAGGG
TACTACTGAATATGAAGATAAAGATTTAAACAAATTTGTGGATTCATACAGGCTGGGCTGCTTCCTTCCTATTGAGTACA
CTAGCAAGTTTTGCACAGTGGAGATGCAATATTACACTGCTTTTAGTTCCGTGGAGGCCACGATTTTTGTTCGAGTCTTT
AAAGGGCGATGGCCACAAGGTTTTCGAGGTGTACTAACTGCTAGTACCTTGAAGCAAAGAGACGTCCAAATCTCACTGCT
GCAACTTAATGATGATGAATTGTCTGTTAATGCTGATGGCTTTGTTAAGCTATCAAGACGTGTTATTTGTGTTGAAAAGG
ATGGGAAGCTGGGGCTGTCTATCTTCCAACAGGGTGATGGTGGGAAAGAAGGCCGAGCGATAGCTGGTATTTGGATTGAA
GCTGAAGATGCCGGAAAAGCCACTCATTACATGCCTGTGGAGGCGCTCGACTGCTGGATGGAAGTTACAGTTGCCTGGTC
TCTTTTCAGACTTTGATCTTATCCTCGTGACAAGTTAAATTTATGTTTGCTTTTGTTGCTAGACTGGTTTATGTAACTGT
AGACAAGTGGCTTGACAATTAGTGTGAACTGGTGCGTGCTTTGTGTAGTAACTAGTAACCGGAGATTGGTGCTTTTGTAT
GGGCAAATTTGGATACCACTTTAAGTGTTCTTGGATTCTCTTTCTAATTCTGCTAAGTAACGTGAAATGCCTCTTGTTCT
GATTTTAGTGTTTTAGAAGCTCTCACAGAGATTTTATTATCTATAATTGGAATGTTCTCTCTGAGAGAGACAAGCTGTTG
TTAATCAGCACACATTGTATTTTGGGGCTAAAATG---------------------------------------------
--------------------------------------------------------------------------------
-------AA-----------------------------------------------------------------------
-------------------------------------------------------------ATTGTCCTTAAACTTGTCA
TTTGGGTTCAAAGCCATCAGAATCACCG-ATCTGTTTTTGTGAAAATATGAGGCCAGTTTAGATCTTTCCTTTAGTACCT
TGTACCGCCATATTCAGCACTCGTGTTAACCATGGCAAGCTGATGTAGTTGACTTAGCGA---------TTTTTTTAAAA
CAAGACAAGATTTGTGATTTTCATTGATTAAGTGAGTCTTAGACATAATCCCATAAGGTGGGTAAAAAGAAGATTACTCT
TGTGGCATTACATTACTCGCGCTTGGCATTCACGATCTCCCAAAGCAAAGCTTCATCCTAGTCCCCCCGTGTTCCTGCCC
TGGCGACACAGGCGGAAGACCCAAACCGCGCCACCGACTACCCTCCTCGTCGCTCTCCCTCCCCTCGCCGTTGCTGGACG
ACGCTGCCGAGCTAAGCTCGCACGACAGATGGTGGCAGCGGGGCCCTGTTCTCGCCTGGCGGCGGCAGATCTCGGTGGGG
GAGGCTCGGTCCACCTCGGCTACACCGGACGGTTTTTCCGGCAATTTCGCGCAGTGGCGCTCATCTCCAGCTATTCGAAG
GGGTTGGCCTTTTTTCTCTGCGGTGCAGCAGCTGGCTCGCGGATCGGACCTTCGACGGCGGCCAGGGTGTGATGGCAGCT
CCCCTTCTGC
>chr3A_1
GGTAAAAGGGGTTGAGCTTAGCAACCTAGTAAGAACCAACACTAAACTGTGAGGCGACCCATCACTTCAAAATTTAGTAT
TAAGTTTTGCTTTGATTTTTCATAACAAAGGGTTTCTAGACTTTGGACTGAGGCATGAGTAGGATCGAATAGTTGTAATC
-TTTTTAAAATGCATTAACATTGTTGGAAAAAGGTATGAATGTTTTTAAAATCACACAAATATTTTATTAAACACACATG
CATTGGTTATTTTTTTCAAAAAGTAATTTAGTTACAAGGACACTTTAAAAAATACAAGAAGTTTTTTAGTTGCATTATTA
TTTTTATATGTGTTTTGTTTGCTACAAAAAATACAATATTTTGACATTTTCTTTTAACGGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAG--------------------------------------------
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-----------------GGAGTATTTTTAACTAGTGAAATTAAAATATCATTTTAATTTTACTTTAGGGGAAACCATAAT
TTTATCTTTTTTGAGAGAAACATAATTTTAACCGTTCGCTTTTCTTTCTATTTACGGATTATGGAGGAGCCAGCTTTTAT
TTATTTTTGAGTAAATCGGAGGAACCGGCTAGTGGGTCGGTTCTATGGTAGGCCCATAAAAGAAGCGCAGACC-------
--------ATGGCCCTGGAGTATTTAACTTTTTAGACAACGCGACCCCAATCCGGTCTAGGGTTCTTACCGTTTTTTGCG
ATACTAAAAA-T-TCAGATTGCGGACGGCGGTGGCGAGGTTAGATCGGTTGTTCGGAAGAGGAGATGGAGGTGATGGATG
TAGGCATTGGGATGGAGCGCAGGAAGAGGCCTAGGAAAGCGAGTGGAAAAGCTGCCGAAGCAGAGGCGGCGGCGGCGGCG
GCTGCGGAAGCTGCTAGGGCGGCGGCGGAAGAAGAAGCTGCTG---------------GGTGGGAGGAGTTCGAGAAACG
GATGGCAAACCCTCCGACGGCCGAGGAGCTGCGCGCGAGCGAGGAGAGCTGGGAGAAGTTCTGCAGCGAATCGTGGGAGA
GGTTCCGCGATAGATGGATCGATGTCTGGTCGCACGGCATGATCCCCTTCGACGCCGTCAGTAAGCGGCCAGTGCTGCCA
ATATC-TTTCAGTTTCCTTCTTA----CCAGGATCCTTGGTTGCTCTCGTAATATACGTATA------------------
-----ATTGTTGGGTGCAGCGCAAATCCCCTGCATGCGTTTCACAGACGCCGACTTGAGGCACCCTGATTTCCGGAACAT
CCTCTATCCGGAGGACACACTACAGATCGTCTCCGTCCAAGTCAAGGACCTTACTGGTGGCTTGCAGTGGCCCCTCGATG
TCTACGGCGTCGTCGCCGTACGCGATGGGGTGGATCGCTTGCGAAATGTGGTTTTCAGCCGTGAAAGGGACGACTGCCAA
AGTATCAATGAGCAGGTTCGTGAAAACTGTACTTTCCCACTATAGGACATG----GATTAGAATAGAGAAGTAGCAATGG
GAACAGAATTCACTAAATAAACTTGTATA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATCTCAAAGCCATACATGGATAAGTAGGCAAAGTTCCAGAGGGAATTTTTTCACATGATGCATATGTCCAGTTTTT
GCAAAAAAATAAAATA-AAAAAATCCATGTAATGGCTCTGTTTGCAGCGCATTTGCAGATCTTTAAATTAAACGTCCTTT
CCTGTGCTTGAGTATACATATTTCGTATTATTATTCTTCTTATTAT----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------GTATAATCGATC
ATAGTTTGATTAATTGAATATATTTCTCTGCGGTCTTATTGTTGATGAACATAACTTTTTGTTATTTTTACTTGTAATTA
GTTAATAGATGAATTATGTTCCAGTGAATACAATCTCACTTTTTACCAACATTGGATGGGTTGAATATATTCCACTA-GA
GCCTTAATTATTACTGAAAGACAAATACATTAC----ATCGTTTACTTAATTAGTTAATTGATGCATGCAGGATTCATAC
CTAACACTGACAGGCCCTAGTCGCGGTGTTGTCATGTCGCATGATAACTCACATTTGGAGGTAATGCTCAAAGTGAAGGG
TACTACGGAATCTGAAGATAAAGATTTAAACAAATTTGTGGACTCATACAGGCTGGGCTGCTTCCTTCCTATTGAGTACA
CTAGCAAGCTTTGCACAGTGGAGATGCAATACTACACTGCTTTTAGGTCCGTGGAGGCCACGATTTTTGTTCGAGTGTTT
AAAGGGCGATGGCCACAAGGTTTTCGAGGTGTACTAACTGCTAGTACCTTGGAGAAAAGAGACGTCCAAATCTCACTGCT
GGAACTTAATGATGATGAATTGTCGGTTGATGCTGATGGCTTTGTCAAGCTATCAAGAGGTGTTATTTGTGTTGAAAAGG
ATGGGAAGCTGGGGCTGTCTATCTTCCAACGGGGTGCTGGTGGGGAAGAAGGCCGAGCGATAGCTGGTATTTGGATTGCA
GCTGAAGATGCCGGAGAAGCTACTCATTACATGCCTGTGGAGGCGCTCGACTGCTGGATGGAAGTTACAGTTGCCTGGTC
TCTTTTCAGACTTTGATCTTATCCTCGTGACAAGTTAAATTTATGTTTGCTTTTGTTGCTAGACTGGTTTATGTAACTGT
AGACAAGTGGCTTGCCAATTAGTGTGAACTGGTGCGTGCTTTGTGTAGTAACTAGTAACTGGAGATTGGTGCTTTTGTAT
GGGCAAATTTGGATACCACTTTAAGTGTTCTTGGATTCTCTTTCTAATTCTGCTAAGTAAGGTGAAACGCCTCTTGTTCT
GATTTTAGTCTTTTAGAAG--CTCACAGAGATTATATTATCTATAATTGGAATGTTCTCTCTGAGAGAGACAAGCTGTTG
TTAATCAGCACACATTGTATTTTGGGGCTAAAATG---------------------------------------------
--------------------------------------------------------------------------------
-------AA-----------------------------------------------------------------------
-------------------------------------------------------------ATTGTCCTTAAACTTGTTA
TTTGGGTTCAAAGCCATCAGAATCACTA-ATCTGTTTTTGTGAAAATATGAGGCCAGTTAGC-TCTTTCGTTTAGTACCT
TGTACCGCCATATTCAGCACTTGTGCTAACCATGGCAAGCTGATGTAGTTGACTTAGCGAATTTCAA--TTTTTTTAAAA
CAAGACAAGATTTGTGATTTTCATTGATTAAGAGAGTTTTAGACATAATCCCATAAGGTGGGTAAAAAGAAGATTACTCT
TGTGGCATTACATTACTCGCGCTTGGCATTCACGATCTCCCAAAGCAAAGCTTCATCCTAGTCCCCCGCGTAGTG-----
TGGCGACATAGGCGGAAGACCCAAACCGCGCCGCCGGCTACCCTCCTCGTCGCTCTCCCTCCCCTTGCCGTCGCTGGAGG
ACGCTGCCGAGCTAAGCTCGCGCGGCGGACGGCGCCGGCGGGGCCCTGTTCTCGCCTGGCGGTGGCAGATCTCGGTGGGG
GAGGCTCTGTCCACCTCGGCTACAGTACGCAGTTGTTCCCACGACTTCGCGCAGCGGCGCTCATATCCGGCGATTCAAAG
GGGTTGGCCTTTTTTCTCTGCGGTGCAACAGCTGGCTCGCGAATCTGACCTTCGACGACGGC------------------
----------
>chr3D_41
----------------------------------------ACTAAACTGTCAAGCGACCCATCACTTAAAACTTTAGTAT
TAAGTTTTGCTTTGATTTTTTATAACAAAGGGTTTTTAGACTTTGGACTGAGGCAGGAATAGGTTCTAATAGTTAAAATC
TTTTTAAAATTGCATTAACATTTTTGGAAAAGGTATGAGCAC-TTTTAAAATCACATGAATATTTTATTAAACACATGGG
CATTTGTTAATTTTTTCAAAAAATCTTTTAGTTACATGAACATTTAAACAAATGCAAGA--TTTTTTAGTTGCATCAACA
TTTTTATACGCCTTTTTTTGCT---AAAAAAAAGAATGTTTTGACATTTTCGTTTAGTTGAATGTACTCCATCCATTTTT
ATTTAGTCTACATATTAACTTTATGTTAAGTTAAATTTTTTTAATTTGAATATAAATATAAAA---AATGTTAACAGCTA
CAATATC-AATCAATATCATAGATTCATTATTGAATATATTTTCACATCATATATATTTTTTTATTGTAAATGGTCATTT
ATATTTT-ATGAACATTGTGAAACTTTATAAATTTAAACTTATAACAAATTATACA----TAGTAAATTAAAAC------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------AGAAGGAGTATTTTTTTTCGAGAAACACTTGTAACATTATTGATAGCC
ATAACAATTACAGGTACAATGATTTGGACCTAAGATCTAAGAAAATACAAAGTAACTTCTATAACTAAGAATTAAAATGA
AATCTCTTGTAAACACCTTCTTCGCGGTATCAATCTCTTCTCGAAGAAATACTCCAAAAACTTCGGTAAAGAGTCTGCAA
TTAGACTTGAGCAATGACATTGTCACTCTTTCACCCGCACGAACATTACTAAAAATGGTTTTTGAAAGCGCCTTGAGTCG
CCCATCTAGAAAGATGGGAAGCCTTTATCAATAAATGTATTTGGGTCCGGGATGATCCTCTAGAAGTGCAGGTCGTCGAA
TCACTATATCTTCACCATGGTGCCGATGAAAGATTTCACCTCCACAAAGAATCAAACCAACAAAAAAAAGCTTGACACAA
CAACATAAAATCATCAGATTCGAACAATTGGACCTGAGAGGACAGAAAACTCATTAACCTCATGGCACCATCAAAGAACG
AAAGGAAACTTATTTTCACACAACTATGATGATCACTGGGTCGGTTCTTAGGTCATGAAGATCCGAGGTCCCCCACCTCT
CAGCGCCAAGATGGCAGCTGAAGGCGAGGGGACCTAAATTTCTTAGATGGCGGCGGCGACGGCGGCCGAAGGAAAACCCT
AGAACAAACGCTGATCAGGAGTATTTTTAACTAGTGAAATAAAAACATAC------------------------------
----------------------TAATTTGAACTGTTCGCTTTTCTTTTTATTTACGAATGAGCTATGT------------
-------------------------------GTGGGTCGGTTCTTTGGTAGGCCCATAAAAGTAGCGCAGCCCAT-----
--GTGGGTATGGCCCTGGAGTAT------------ACAACGCGACCCCAATCCGATCTAGGGTTCTTACCA--TTTTGCG
ATACCAAAAA-TATCAAATTGCGGACGGCGGTGGCGAGATTAGATCGGTTCTTCGGAAGCGGAGATGGAGGTGATGGAGG
TGGGCATTGAGATGGAGCGCAAGAAGAGGCCTAGGAAAGCGAGTGGAAAAGCTGCCAAGGCAGAGGCGGAGGCT---GCG
GCTGCGGAAGCTGCTAGGGCGGCGGCGGAAGAAGAAG---AAGAAAGGTCCTGGAAGTGGTGGGAGGAGTTCGAGAGAGG
GCTGGCAAACCCTCCGACGCCCGAGGAGCTGCGCGAGCGCGAGGAGAGCTGGGAGAAGTTCTGCAGCGAATCGTGGGAGA
GGTTCCGCGAGAGATGGATCGATGTCTGGTCGCACGGCAAGATCCCCTTCGATGCCGTCAGTAAGCGGCCAGTCCTGCTC
ATCTCTTTTCAGTTTCCTTCTTGCCTGCCTGCATCCTTGATTGCTCGTGTAATATCCTATGATTG---------------
-----ATTGATGGATGCAGCACAAATCCCCTGCATGCGTTTCACGGACGCCAACTTCTGGCGCCCTGGTTTCCCGTACAT
GGTCATGCCGGAGGACACACTGCAGATCGTCTCCGTCCAAGTCAAGGACCTTACTGGTGGCTTGCAGTGGCCCCTCGATG
TCTACGGTGTCGTCGCCGTGCGCGATGGGGTGGATCGCATGCGAAATGTGGCTTTCAGCCGTGAAAGGGACGACTGCCAA
AGTATCACTGAGCAG-------------GTATTTTCCCACTCTAGGACATGGATT----ACAATGGACAAATAGCAATGG
CAGCAAAATTCACTATC-TTTTGTGCTTCACCAGACATTCATTACTTATCAAACTTGGTCTTACTAGTGTAGTGTATGTG
TATCTAGAATCAAGTCATAAGCTTTACAATTCATGCCCACAAACAATGTGTTTCTGAACAAAGTTGTTGCAATACTGATC
GCAACTCAATACTGATCGCAACTCGAGTTTACATAGATGTAAATCTGCTAGTAGCTTTTGCTTAATGGTTTCGAAGATAA
CAAGATGCTAAATAAACCTGTACGATCTTGA------------AGGGGAATTTTTAACATGATGCATATGTCCAGTTTTT
GCTATGAGA----------------TATGTAATGCCTCTGCTTGCAACGCATTTGCAGATCTTCAAATTAGATTTGCTTT
CCTCTGTTTGAGTATACAATTATCGTATTATTATTATTTATTATT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATC
AATGTTAGATGAATTGAATATATTTCTCTACAGTCCTATTATTGATGAAAATAACTT-------TTTTTACTTGTAATTA
GTTGATAGATGA-TTATGTTTCAATGTGTACATCCTCATTTTTTACCAACATTGGATTTATTGAATATATTCCATTGTGA
GTCTTAATTATTGATGAAAGATAAATATATTACGTACATTGTTTACTTAATTTGTT-ATTGATGCATGCAGGATTCATAC
CTAACACTGACAGGTCCTAGCCGCGGTGTTGTCATGTCGCATGATAACTCACATTTGGAGGTTAAGCTCAAAGTGAAGGG
TACTACTGAATCTGAAGATAAAGATTTAAACAAATTTGTGGACTCATACAGGTTGGGCTGCTTCCTTCCTATTGAGTACA
CTAGCAAGCTTTGCACAGTGGAGATGCAATACTACACTGCTTTTAGTTCTGTGGAGGCCACAATTTTTGTTCGAGTCTTT
AAAGGGCGATGGCCACATGGTTTTCGAGGTGTACTAACTGCTAGCACCTCCAAGAAAAGAGACATCCAAATCTCACTGCT
TGAACTTAATTGTGATAAATTGCCTGTTGATGCCGATGGCTTTGTCAAGTTATCAAGAAGTGTTATTTGTGTTGAAAAGG
ATGGGAAGCTGGGGCTGTCTATCTTACAACGTGGTGCTGGTGGGGAAGAAGGCCGAGCGATAGCAGGTATTTGGATTGCA
GCTGAAGATGCTGGAAAAGCCACTCATTACATGCCTGTGGAGGCGCTCGACTGCTGGATGGAAGTTACAGTTGCCTGGTC
TCTTTTCAGCATTTGATCTCATCCTCGTGACTAGTTAAATTTATGTTTGCTTTCGTTGCTAGACTGGTTTATGTAACTGT
AGAGAAGTGGCTTGTCAATTAGTGTGAACTGGTGTGTGGTTTGTGTAGTAACTAGTAACTGGTGGTCGATGCTTTTGCAT
GGGCAAAGTTTTATACCACTTTAAGTATTCTCGGATTCTCTTTCTAATTCTGCTAAGTAACGTGAACCATGTCTTGTTCT
GATTTTAGTCCTTTTTAGAAGCTCACAGAGATT---TTATCTATAACTGGAATGTTCTCTCTGAGAGAGACAAGCCATTG
TTAATCAGCACACATTGTATTTTGAGGCCAAAATA---------------------------------------------
--------------------------------------------------------------------------------
-------AATTTGTCCTTACACTTGTAATTTGGTTAGTCTTTTTTAGAAGCTCACAGAGATTTTATCTATAACTGGAATG
TTCTCTCTGAGAGAGAAGGCGTTGTTAATCAGCACACATTGTATTTTGAGGGCAAAATAAAATTGTCCTTAAACTTGTAA
TTTCGGTTCAAAGTCATCAGAATCACTTTATCTTTTTTTGTGAAAATATGAGGCCAGTATAGATCTTTCCGTGTAGTACC
TTTACCGCCATATTCAGTGTTCGTGCTAACCATGGCAAGCTGATGTAGTAGAATTAGGGAATTTTAGACTTTTTTAAATA
AGACAAAAGATTTGCGATTTTCATTGATCAAGATAATTTTAGACATAACCCCACAAGGTGGGTAAAAAGAAGATTACTCT
TGTGGCATTACATTACTCACGCTTGGCACTCATGATTGCCCAAAGCAAAGCTTCATCCTAGT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr3A_810
--------------------------------------------------------------------------------
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-------------------------------GTGGGTCGGTTCTTTGGTAGGCTCATAAAAGTAGCGCAGCCCAT-----
--GTGGGTATGGCCCTGGAGTAT------------ACAACGCGACCCCAATCCGATCTAGGGTTCTTACCA--TTTTGCG
ATACCAAAAAATATCAAATTGCCGACGGCGGTGGCAAGATTAGATCGGTTCTTCGGAAGCGGAGATGGAGGTGATGGAGG
TGGGCATTGAGATGGAGCGCAAGAAGAGGCCTAGGAAAGCGAGTGGAAAAGCTGCCAAGGCAGAGGCAGAGGCT---GCG
GCTGCGGAAGCTGCTAGGGCGGCGGCGGCGGAAGAAGAAGAAGAAAGGTCCTGGAAGTGGTGGGAGGAGTTCGAGAGAGG
GCTGGCAAACCCTCCGACGCCCGAGCAGCTGCGCGAGCGCGAGGAGAGCTGGGAGAAGTTCTGCAGCGAATCGTGGGAGA
GGTTCCGCGAGAGGTGGATCGATGTTTGGTCGCACGGCAAGATCCCCTTCGATGCCGTCAGTAAGCGGCCAGTCCTGCTC
ATCTCTTTTCAGTTTCCTTCTTGCCTGCCCGCATCCTTGGTTGCTCTTGTAATATCATATGATTGATTGATTGATTGATT
GATTGATTGATGGCTGCAGCGCAAATCCCCTGCATGCGTTTCACGGACGCCAACTTCAGGCGCCCTGGTTTCCCGTACAT
GGTCATGCCGGAGGACACACTGCAGATCGTCTCCGTCCAAGTCAAGGACCTTACCGGTGGCTTGCAGTGGCCCCTCGATG
TCTACGGTGTCGTCGCCGTGCGCGATGGGGTGGATCGCATGCGAAATGTGGTTTTCAGCCGTGAAAGGGACGACTGCCAG
AGTATCAATGAGCAGGTTCGTGAAAACTGTATTTTCCCACTCTAGGACATGGGTC----AGATTGGAGAAGTAGCAATGG
CAGCAAAATTCACCATC-TTTTGTGCTTCACCAGACATTCATTACTTGTCAAACTTGGTCTTACTAGTGTAGTGTATGTG
TATCTAGAATCAAGTCATAAGCTTTACAATTCATGCCTACAAACAAAGTGTTTCTGAACAAAGTTGTTGCAA--------
---------TACTGATCGCAACTCGAGTTTACATAGATGTAAATCTGCTGGTAGCTTTTGCTTAATGGTTTCGAAGGTGA
CAACATGCTAAATAAACCTGTACAATCTTGA------------AGGGGAATTTTTAACATGATGCATATGTCCAGTTTTT
GCTATGAGA----------------TATGTAATGCCTCTGCTTGAAATGCATTTGCAGGTCTTCAAATTAGACTTGCTTT
CCTCTGTTTGAGTATACAGTTATCGTATTATTA-------TTATT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATC
AATGTTAGATGAATTGAATATATTTCTCTACAGTCCTATTATTGATGAAATTAACTT-------TTTTTACTTGTAATTA
CTTGATAGATGAATTATGTTTCAATGAGTACATTCTCATTTTTTACCAGCATTGGATTTATTGAATATATTCCACTGTGA
GTCTTAATTATTGATGAAAGATAAATATATTACGTACATTGTTTACTTAATTTGTT-ATTGATGCATGCAGGATTCATAC
CTAACACTGGCAGGTCCTAGCCGCGGTGTTGTCATGTCGCATGATAACTCACATTTGGAGGTTAAGCTCAAAGTAAAGGG
TACTACTGAATCTGAAGATAAAGATTTAAACAAATTTGTGGACTCATACAGGCTGGGCTGCTTCCTTCCTATTGAGTACA
CTAGCAAGCTTTGCACAGTGGAGATGCAATACTACACTGCTTTTAGTTCTGTGGAGGCCACAATTTTTGTTCGAGTCTTT
AAAGGGCGATGGCCACATGGTTTTCGAGGTGCACTAACTGCTAGTACCTCCAAGAAAAGAGACATCCAAATCTCTCTGCT
TGAACTTAATTGTGATAAATTGCCTGTTGATGCCGATGGCTTTGTCAAGTTATCAAGACGTGTTATTTGTGTTGAAAAGG
ATGGGAAGCTGGGGCTGTCTATCTTACAACATGGTGCTGGTGGGGAAGAAGGCCGAGCGATAGCTGGTATTTGGATTGCA
GCTGAAGATGCCGGAAAAGCCACTCATTACATGCCTGTGGAGGCGCTCGACTGCTGGATGGAAGTTACAGTTGCCTGGTC
TCTTTTCAGCATTTGATCTCATCCTCGTGACTAGTTAAATTTATGTTTGCTTTCGTTGCTAGACTGGTTTATGTAACTGT
AGAGAGGTGGCTTGTCAATTAGTGTGAACTGGTGTGTGGTTTGTGTAGTAACTAGTTACTGGTGGTCGATGCTTTTGTAT
GGGCAAAGTTTTATACCACTTTAAGTATTCTCGGATTCTCTTTCTAATTCTGCTAAGTAAGCTGAACCATGTCTTGTTCT
GATTTTAGTCCTTTTTAGGAGCTCACAGAGATT---TTATCTATAACTGGAATGTTCTCTCTGAGAGAGACAAGCCGTTG
TTAATCAGCACACATTGTATTTTGAAGCCAAAATAAATTTGTCCTTAAACTTGTAATTTGGTTAGTCTTTTTTAGAAGCT
CACAGAGATTTTATCTATAACTGGAATGTTCTCTCTGAGAGACAAGCCGTTGTTAATCAGCACACATTGTATTTTGAGGC
CAAAATAAA-----------------------------------------------------------------------
-------------------------------------------------------------ATTGTCCTTAAACTTGTAA
TTTGGGTTCAAAGTCATCAGAATCACT-----TTTTTTTGTGAAAATATGAGGCCAGTTTAGATC-TTCCGTGTAGTACC
TTTACCGCCATATTCAGCGTTCGTGCTAACCATGGCAAGCTGATGTAGGAGACTTAGGGGATTTTAGACTTTTTTAAATA
AGACAAAAGATTTGCGATTTTCATTGATCAAGAGAGTTTTAGACATAACCCCACAAGGTGGGTAAAAAGAAGATTGCTCT
TGTGGCATTACATTACTCGCGCTTGGCACTCATGATTGCCCAAAGCAAAACTTCATCCTAGT------------------
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----------
>SNPs
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--------S---------------------------------S----S--------------------------------
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-----S-----SS-----------S----------S---S-S--S--SS-SSS----SSSS--SSS---S------S---
S------S----------------SS--S---S----------S-SSSS--SSSSSSS--------S------S------
-SS---SS--S--------S--------------------S-S--SS-SS--SSS-SSSS--------S-----------
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-----------------------------------------------S-----------------SSSS--SS-SSSSSS
SS------S----------------S---S--------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-----S---------------------------S----------------------------------------------
---------------------------S-S--------------------------------------------------
-------------------------------------------------------------S------------------
--S------S---------------S-----------------S--SSS------S------------------------
----------------S--------------------------------------------------S-S----------
------------------------S--S----------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---
---------------------------------------------------S------------S---------------
----------------S----------------------------S-------S-S-----------SS-----------
------------------------------------------------S------------------S----S-------
------------------------------------------------------------------------S-------
-----------S------------------------------S-------------------------------------
--------S----------------------S------------------------------------------------
------------------------------------------------------S-------------------------
-S--------------------------S----------------S----------------------------------
------------------------------------S-------S---------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S--------------------------------------------S--------------------
-------------------------------------------------------------------S------------
---------S---------SS------------S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------SS----------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------S----S------------------------------------------
-------------------------------------------------------------------SSSSSSSSSSSSS
--------S-----------------------S---S----------------------------S-----S------S-
---------------------S--S-S--S--S-S-S-------------------------S-----------------
-------S----------------SSSSS-S---S----SS-S-S---------S---------S---S--S----S---
---------------------------S-------------S---S-----------S----SSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_1840
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------------------------------------------------------------AGAAGAAGCGCAGACCATGT
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>reverse_3571
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--------------------------------------------------GGAACAGAGCGAGTAGCAGT----------
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>forward_3009
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-----------------------------AGGCAAAGTTCCAGCGGATT-------------------------------
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>reverse_4285
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--------------------------------------------AAAGAAGGCCGAGCGATAGC----------------
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>forward_4162
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--------------------------------------------------------------CGTCCAAATCTCACTGCT
GC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_5589
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--------------------------------------------------------------------AGCTATTCGAAG
GGGTTGGC------------------------------------------------------------------------
----------
