>input_sequence_34435
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---------AATATCAATTAGAGGGACCAGTTTCCAAGGCTTTGTTTGTGGTTCATGAATCATCGTTTGCTAAATTTTTT
TGGAAGTCAGCCGAAC----------------------------------------------------------------
--------------------------------------------------------------------TTAGTTTATAAG
AAAAAAAGGTTGGCCATATAAATGGAAAAATATGCGAAGTCTT-AGTGGACAAAAAGGATTATTGCAATACACACGCCAA
ACACAATTTAATTATCCTATGGAAATTTTGTTAATCTACATACAAAATAGGTCATTTCTCTATAATCATTTGGTTAATGC
AATCAAACCCGGGTTGCTGGAGCTAAGGGGTGAAAGGAAAAGAGCACAGTTTAGGGATGGTGGAGCTGTGCAAAATGCGT
GACTGATGCCTAGCTAGGAAATTAC--CAAAACTAAGCTGTGGGTCGAACAAATTCACCAAATGCATTCATGCGCGACGC
ATGAGAAGCTGGCGCGAGCAAATTAAGCATGGAGGTACGTAGTTGCCGGACGCGTGCTGCATCTCCAGGTCGCGCGCTAA
CTGATTCAGTTTGTATGTCGCGTGCACTCGA---------------------------TCTGCGCGCGAGAACATGTACG
CTCAATCTGCCCATATATACCACCTTTCTTCTGCAAAGCCAGCCACACCATCGATCTCCATCTCCACAAATTTCACCGGA
GAAGCATGGCCTCCATGGCGGTGGCCAGGATCGCCGCCGTCTTGACCGTGGCGGCGCTCTTCGCCGCGGCGGGGGCAGCG
GATCCCCAACCCGCAAAGGGAGCACATTGCTGGCGGTACTACTCTTCCTGCATGCACAAGTGCGACGGCTACCGTGATGC
CGCCGCCCGCTCCGTCAATCGTACTCAGCCCGCCGTCCACACAACCGTCGACGATGGTGCAGCAGCCGCCTCCATCCCCG
TCAACTCTATCGATGGCACTGCAGCAATCACACACTCCACCGATGGCACTCTAGCCGCTGTCGACAAAACCGATGGTGCA
GTCGCCCATATCGCCGACGGCTACGACGACAGGGACGACGATGACAAGGGCGACAAAAAGGATGACGATGACTACGG---
---TGATAAGAATGACAAGGACGACGATGATAAGGATGACAAGGATGACGACGATGATGATAAGGACAACAAGGACGACG
ACGACAACGACGATGATAAGGACGACGATGATGAGAATGATGATA---ACGATGACGACGACGACGACGACCACGACGA-
-----CAGCC---GCAGCGACTGGCGGAAGTACTTCAAATGCAAGAAGATGTGCATCGTGGACTGCTACAGGAGCCTGCC
GCCGGTGTGCTACAAGATGTGCATCTCGGAGACCTGCCTCAATCACCCACCCTGTACGTACTCCAAAAAAGCAACATGCG
TCTTACCTGGCCTGTTTATTTGGGCTTTTACTTATTCTTTTATAGTTTTTCCACTTTACCAAAAAAGTCACTAAAGCTTC
TAAATAGGGTTTTTTTTTGCTTCGGCTCTTGTCTTATGAGTATATACCAAAAGCCGAAGCAAAAAAAAACACCTATTTAG
GAACTTTTTTGGTTTTTTACCAAAGTGAAAAAGCTAAAAAAGTAGAAGCAAAAACCCAACCAAAGAAGGTCATAAATTGC
GCGTACATATAAGAATCACTCCATTTACCATGCCTTTGATTTACAGATAAACAGGCGGATTGCTACAAATCATGCGGGCA
CAAATGCTTGGACCACCACCACCACCACCACCATCACCATCACCACCACCACCCAAGCCCGGGTCCAAAGCCCCCGAGTC
CGAAGCCACCAAAGCCGGAGCCAAAGCCGACGCCACCAAAGCCCACACCTCCAAAGCCCGCTCCACCGAAGCCCATGCCG
CCACCGTCGCCCATATCGCCGCCGT------------------------------------------------CGCCCAT
GCCGCCGAAACCAACCCCGCCGAAGCCGCTGCTA------------------------------AAGCGGCCGTGCCATC
CTAATGCACGGAAGCC-------------AAGGCTACCGTGTCCGTCGAAGACTAACTCGAAACCGAAGGCAAAGTCGAA
GCCGAAGCCACCGTGCCCGTCGTCGGCCACTGTATCTGTGTCGACCAACACTAGCAACAACTGATGGTTATACACCATGA
CGTCTATGCGCACATATTTGAAACAGAGCTTGTCATATATATAGCACAAAGCCATTATGAGTAT----------------
------------------------------ATATAGATTATTGTATAAGGTTACTCTATAGATGAAGAACTAATTCATCA
GCTCTAGCTAAGCTGGGTACAGAGCTAATTCATCAGCTCACCAGTGATCATGCGTGTTGCTGAATATCTCATCTATGTGC
GTGTTGTGTAATGAGATTAATGTGGGAATACATCATGGGCGGAGTCAGGATTTGAACATAGGGGGGCTAAGAGGACAATG
CACATGCAAAAAA-------------------------------------------------------------------
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-----------------------------------------------------
>chr2A_1_TraesCS2A01G212500
CATTCTACTAAAGGGATGTCCTGATCCTTGGATCACTTACAAAAATGGTCTTCGCTAGGAGAATCATTCCCGCCTATCTT
TTCATCGTCATAGTAGACCTTTTGCAACGACTCACGCACCCACAAATGACCTTCTCCTTCATCCTCTAAATCCATTGTTA
CAACCACTGTGCTTTAATGCAATGATGATACCCTTATTGCAATCAAGGCCACAACATCTGCAATATCATGT-CCTTTGTT
TTAGTTATCTTGAGTAATGAAGAAGCAAGTACCTACTAAATCTTTG-TAATGTGCTATTGTAGAAGTATCTATTAATGGA
GGAAATCTTTGCTGACTCCCACCGAGGGCTTTCTCTTATGCAATACATGAGGACATGTCCGCCCGAGATTTCTTGGGCAT
GATGACACTTGGTGAAGCATTTCACCTTCCCCTGTCCATGCAAGCTCATAACAAAGTACGTCAAATCCAAAATCTTATTG
CACACATGGGTAATGGCTCTCATCCCGAGGACAAAGATATATAGGCGTATATTTAGGGATCTAGTAAATAGACGCCACGG
CGATAC-TAACTACAAATGTTTCTTCAGAGATATTAAAGCACACAAGACATACCTGTGA---------------------
--------------------TTGTGAAAATCCAAATCAAGCATGAAAATTAAAGTTTTTGGTGGGCTTCTCCTCTCGGAT
CGTCTCAACATCAGAAACAATCTCAACG-CCGTCACTACAATATTGGAGATGACCATGACTGCTTATTGTGTGGGCAACC
GATTGAGGAAACTATACATCATATGATATTCAAATGCCAATTCAGTGCAGGCTGCTAGTCGAAGCTGGGCCTTCTTTGAC
TACAAACGTTTTAAATTATGTTGTTACGTACAGAAGTAATTATAAGTTATCA-GAATACATTTCATGAATTTTTTTGTGA
TATCAAATCGAGTCGATGTTGGTGTTTTTTT---GTATAATGATGACAAAATGTATAAATACATGGCTAATGACTCTAAA
ATGGCGCCCAATATCAATTAGAGGGACCAGTTTCCAAGGCTTTGTTTGTGGTTCATGAATCATCGTTTGCTAAATTTTTT
TGGAAGTCAGCCGAAC----------------------------------------------------------------
--------------------------------------------------------------------TTAGTTTATAAG
AAAAAAAGGTTGGCCATATAAATGGAAAAATATGCGAAGTCTT-AGTGGACAAAAAGGATTATTGCAATACACACGCCAA
ACACAATTTAATTATCCTATGGAAATTTTGTTAATCTACATACAAAATAGGTCATTTCTCTATAATCATTTGGTTAATGC
AATCAAACCCGGGTTGCTGGAGCTAAGGGGTGAAAGGAAAAGAGCACAGTTTAGGGATGGTGGAGCTGTGCAAAATGCGT
GACTGATGCCTAGCTAGGAAATTAC--CAAAACTAAGCTGTGGGTCGAACAAATTCACCAAATGCATTCATGCGCGACGC
ATGAGAAGCTGGCGCGAGCAAATTAAGCATGGAGGTACGTAGTTGCCGGACGCGTGCTGCATCTCCAGGTCGCGCGCTAA
CTGATTCAGTTTGTATGTCGCGTGCACTCGATCTGCGCGCGAGAACATGTACGCTCAATCTGC-----------------
----------CCATATATACCACCTTTCTTCTGCAAAGCCAGCCACACCATCGATCTCCATCTCCACAAATTTCACCGGA
GAAGCATGGCCTCCATGGCGGTGGCCAGGATCGCCGCCGTCTTGACCGTGGCGGCGCTCTTCGCCGCGGCGGGGGCAGCG
GATCCCCAACCCGCAAAGGGAGCACATTGCTGGCGGTACTACTCTTCCTGCATGCACAAGTGCGACGGCTACCGTGATGC
CGCCGCCCGCTCCGTCAATCGTACTCAGCCCGCCGTCCACACAACCGTCGACGATGGTGCAGCAGCCGCCTCCATCCCCG
TCAACTCTATCGATGGCACTGCAGCAATCACACACTCCACCGATGGCACTCTAGCCGCTGTCGACAAAACCGATGGTGCA
GTCGCCCATATCGCCGACGGCTACGACGACAGGGACGACGATGACAAGGGCGACAAAAAGGATGACGATGACTACGG---
---TGATAAGAATGACAAGGACGACGATGATAAGGATGACAAGGATGACGACGATGATGATAAGGACAACAAGGACGACG
ACGACAACGACGATGATAAGGACGACGATGATGAGAATGATGATA---ACGATGACGACGACGACGACGACCACGACGA-
-----CAGCC---GCAGCGACTGGCGGAAGTACTTCAAATGCAAGAAGATGTGCATCGTGGACTGCTACAGGAGCCTGCC
GCCGGTGTGCTACAAGATGTGCATCTCGGAGACCTGCCTCAATCACCCACCCTGTACGTACTCCAAAAAAGCAACATGCG
TCTTACCTGGCCTGTTTATTTGGGCTTTTACTTATTCTTTTATAGTTTTTCCACTTTACCAAAAAAGTCACTAAAGCTTC
TAAATAGGGTTTTTTTTTGCTTCGGCTCTTGTCTTATGAGTATATACCAAAAGCCGAAGCAAAAAAAAACACCTATTTAG
GAACTTTTTTGGTTTTTTACCAAAGTGAAAAAGCTAAAAAAGTAGAAGCAAAAACCCAACCAAAGAAGGTCATAAATTGC
GCGTACATATAAGAATCACTCCATTTACCATGCCTTTGATTTACAGATAAACAGGCGGATTGCTACAAATCATGCGGGCA
CAAATGCTTGGACCACCACCACCACCACCACCATCACCATCACCACCACCACCCAAGCCCGGGTCCAAAGCCCCCGAGTC
CGAAGCCACCAAAGCCGGAGCCAAAGCCGACGCCACCAAAGCCCACACCTCCAAAGCCCGCTCCACCGAAGCCCATGCCG
CCACCGTCGCCCATATCGCCGCCGT------------------------------------------------CGCCCAT
GCCGCCGAAACCAACCCCGCCGAAGCCGCTGCTA------------------------------AAGCGGCCGTGCCATC
CTAATGCACGGAAGCC-------------AAGGCTACCGTGTCCGTCGAAGACTAACTCGAAACCGAAGGCAAAGTCGAA
GCCGAAGCCACCGTGCCCGTCGTCGGCCACTGTATCTGTGTCGACCAACACTAGCAACAACTGATGGTTATACACCATGA
CGTCTATGCGCACATATTTGAAACAGAGCTTGTCATATATATAGCACAAAGCCATTATGAGTAT----------------
------------------------------ATATAGATTATTGTATAAGGTTACTCTATAGATGAAGAACTAATTCATCA
GCTCTAGCTAAGCTGGGTACAGAGCTAATTCATCAGCTCACCAGTGATCATGCGTGTTGCTGAATATCTCATCTATGTGC
GTGTTGTGTAATGAGATTAATGTGGGAATACATCATGGGCGGAGTCAGGATTTGAACATAGGGGGGCTAAGAGGACAATG
CACATGCAAAAAATGCAGCACCAACGTATATATCATTTCTTTATTTCTTTAATATAGTGTCGATATCAAACAAATAATGA
CAACATTTGTTTTGCAGTTACATTGAAATAGCTACATTTTTTTATCAGCTTAGATGTATATCTACGCACAACAGGCCCAT
CAAACCATCAAACGTCGAGCTTTGTAGTAATCCACTCCTAAAATATATACAAGTAGCTATGCATTCTCATCAGTGAAGTG
GGTGGTTAAAACAAATGGCTTCAATTTTTTGTTACAGTTTTGCTAAAGCACATCTAGATGTGTCATAAGTATTGCACATC
TAAGTCTTATGTCATTGATCTTACGTTGAGATCCGTGTGGATATTTTCTTTTTCTTTTTTTCTTTTCCGCTTTATGCTTG
ATTCACTCACTTAGATATGCAATAACTAGAGCACATCTAAATGTGCCCTAAACACACCCGTAAAGTTAATATATCGATGT
ACCATACAATAGGTTCAGCTTAGACAAACCCACAAGCCGTGTTGTGAAAGCCGAGAGGGGGAGATGTTTGCCAATTAGTA
GACCAGCTTGCGGAGTTGTGGTAGATTCATACCGGGCGTGCGGGATCCTTCGTCAGTCAGGTCGTTGCTGATGCTCATGA
GGTCTGCCGCTCAATTAAGCCCTAGCTCGGTGGCGATGGCAGCTGAAACGGTTGAGGATTGTGGAGAAGTGGAGTTGGGC
AATAGCGATGTATTGTGGCAATGCTCTGTATTGGTCCAATCAACGAGTACGTAGACCAGCAGATCGACCAGATTGCAGTA
CGTGCCCTGTGGGCTATCAATTATGGGCTTGGGCTTCTCAAAACTAGATACATAGAGGTCAGGTCAAACGTGTACGTTAA
TGGTCTGAATCACTAATTAAAGAGTATTCCTATCAAAGATCACTCCTACCATTTTAGATTGCGACAACTGACGCATTGCA
TGTGCGTCACTTGTCGCAACTTGAGATTTTTTTTCGTACATCCGGTTATTCAA
>chr2B_117
--------------------------------------------------------------------------------
------------------------------------CAGCCACAAATGACCTTCTCCATCATCCTCTAATTCCATTGTTA
CCACCATTGTGCTTTGATGCAGCGACGATGCCCTTATTACACTCAAGGTGACAACATCTGCAATATTGTGTCCCTTTGTT
CTAGTCATCCTGAGTACTGGAGAAGCAAGTA--------ATCTTTGGTAATGTGCTATTGTAGAAGGATCTGTGGATGGA
GGAAATCTTTGTTGACTCCCACAGAGAGCTTTCTGTTATGCAATACATGAGAACACATCCGCCCGAGATTTTTTGGGCAT
GACGATACTTGGTGAAGCATTTCACCTTCCCCTGTCCATGCAAGCTCATAACGAAGTACGTCAAATCCAAGATCTTATTG
CACATGTGGGTAATGGCTCTCATCCCGAGAACAAAGATATATGGACATATATTTGGGGGTCTAGTAAATACACGTCATGA
CGATAC-TAACTACAAATGTTTCTTCAGAGATGTTAAAGCACACAAGATATCTACAAATGTTTCTTCAGAGATGTTAAAG
CACACAAGATATATGTGTGGTTGTGGAAATCCAAATCGAGCATGAAAATTAAAGTTTTTGGCAGGCATCACCTCTCGTAT
TGTCTCAACACAAGAAACAATCTCAAGCACCGTCACTACAATATCGGAGATGACCATGACTGCTTACCGTGTGGCCAACC
GATTGAGGAAACTATAGATCATATGATATTCAAATGCCAATTCAGTA--GACTGCTAGTTGAAGCTGGGCATTCTTTGAC
TACAAACGTTTTGAATTATGTTGTTACGTATAGAAGTAATTATAAGTACATTTAAATATATTTCATGAAAATTTTAGTGA
TATCAAATCCAGTCGTTGTTGGTGTTTTTTTTT--TATAATGATGACAAAATGTAAATATATGGCTAACAGAGCTCTAAA
ATGGCGCCCAATATCAATTAGAGGGACCAGTTTCCAAGGCTTGGTTGGTGGTTCATGACTCATCGCTTGCT-AATTTTTT
GGCAAGTCAGCCGAAA----------------------------------------------------------------
--------------------------------------------------------------------TTAGTTTATAAG
--AAAAAGGTTGGCCATATAA-TGGAAAAGGGTGCGAAGTCTTGAGTGGACAAAAGGGATTATTGCAATACAGACGCCAA
ACACAATCTAATTATCCTGTGGAAATTT-----------------AATAGGTCATTTCTCTATAATCATTTGGTTAATGC
AATCAAACCCGGGTGGCTGGAGCTAAGGGGTGAAAGGAAAAGAGCACAGTTTAGGGATGGTGGAGCTGTGCAAAACGTGT
GACTGATGCCTAGCTAGGAAATTAC--CGAAACTAAGCTGTCGACCGAACAAATTCACCAAATGCATTCATGCACGACGC
ATGAGAAGCTGGGGCGAGCAAATTAAGCATGGAGGTACGTAGTTGCCGGACGCGTGCTGCATCTCCAGGCCGCGCGCCAA
CTGATTCAGTTTGTATGTCCCGTGCACTCGA---------------------------TCTGC-----------------
----------CCATATATACCACCTTTCTTCAGCAAAGCCAGCCACACCATCGATCTCCATCTCCACACATTTCATCGGA
GAAGCATGGTTTCCATGGCGGCGGCCAGGATCGCCGTCCTCCTGGCCGTGGCGGCGCTCTTCACCGCGGCGGGGGCAGCG
GATCCCCAACCCGCAAAGGGAGCACATTGCTGGCGGTGCTACTCTTCCTGCATGCACAAGTGCGACGGCCACCATGATGC
CGCCGCCCGCTCTGCCAGCCGTACTCAGCCCGCAGTCCACACAACCGTCGATGATGGTGCAGCAGCCGCCTCCATCCCCG
TCAACTCCACCAATGGCACTGCAGCAGTCGTACGCTCCACCGATGGCACTCCAGCCAC------------CGATCATGCA
GTCGGCCACATCGGTGATGCCAAC---------GACGACGATAACAAGGACTACGACAAAGATGACGACAAGGACGACGG
CGATGATAAGGACGACAAGGACGACGACGATAAGGACGACAAG---GACGACGATGAT---AAGGATGACAAGGACGACG
ATGATAAGGATGATGATGATGACGACGATAAGGATGATGATGATGATGACGATGATGATGATGACGACGACGACGACGA-
-----CAGCGGCGGCAGCGACTGGGTTAAGTACTTCAAGTGCAAGAAGAAGTGCATCATGGACTGCTACAGGAGCCT---
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------------CCGCCACCACCACCACCGCCGCCGCCGCCACCG------CCCAAGCCCGGGTCCAAAGCCCCCGAGTC
CGAAGCCACCTA------AGCCAAAGCCAACGCCACCAAAGCCCACACCTCCAAAGCCCGCTCCACCTAAGCCCATGCCG
CCGCCATCGCCCA-------------------------------------------------------------------
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>chr2D_117
CAGCCA--------------------------------------------------------------------------
-------------------------------------------AAATGACCTGCTTCTTCATCCTCTAATTCCATTGTTA
CTACCAC--TGCTTTAATGCAGCGACGATACCCTTATTACAGTCAAGGCCACAACATCTGCAATATTGCGTCCCTTTGTT
CTAGTCATCTTGAGTACTGAAGAAGCAAGTACCTACAAAATCTTTGGTAACGTGCTATTGTATAAGGATCTATGGATGGA
GGAAATCTTTGTTGACTCCGACAGAGAGCTTTCTGTCATGCAATACATGAGAACACGTCCACCCGAGATTTCTTGGGCAT
GACGACGGTTGGTGAAGCATTTCATCTTCCCCTGTCCATGCAAGCTCATAACGAAGTACGTCAAATCCAAGATCTTATTG
CACACTTGGGTAATGGCTCTCATCCCGAGGACAAAGATATATGGACATATATTTGGGGGTCTAGTAAATACACATCACAA
CAATACTTAACTACAAATGTTTCTTCAGAGATGTTAAAGCACACAAG---------------------------------
--------ATATACGTGTGGTTGTGGAAATCCAAATCGAGCATGAAAAATAAAGTTTTTGTCGGGCATCACCTCTCGTAT
CGTCTGAACACAAGAAACAATCTCAAGCACCCTCACTACAATATTGGAGATGACCATGACTGCTTA--------------
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>chr2D_738
--------------------------------------------------------------------------------
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--------------------------------------------------------------CTTATTGTGTGGGCAACC
GATTGAGGAAACTATAGATCCTATGATATTCAAATGCCAATTCAGTACAGACTGCTAGTTGAAGCCGGGCATTCTTTGAC
TACAAACGTTTTAAATTATGTTGTTACGTATAGAAGTAATTATAAGTACATTTGAATATATTTCATGAAAATTTTAGTGA
TATCAAATCGAGTCGTTGTTGGTGTTTTTTTTTGGTATAATGATGACAAAATGTAAATATATGGCTAACAGAACTCT-AA
ATGGCGCCCAATATCAATTAGAGGAACTCTAAAC----------------------GAATCATCGTTTGCTAAAAAA---
TGCAAGTCAGCCGAACTTAGGCCGCGTTCGTTTTCTCTCCGCCCCTGGAACTCCGCTCCGGGAGCGGACCATACTTTACC
TGAATTTGATGGAGCTGGCAAAACCCAACTCCCCAACTCTGCGGAGCGGGGAAGTTCCGAATAGGGCTTTAGTTTATAAC
--AAAAAGGTTGGCCATACAA-TGGAAAAGGGTGCGAAGTCTTGAGTGGACAAAATGGATTATTGCAATACAGACGCCAA
ACACAATTTAATTATCCTGTGGAAATTT-----------------AATAGGTCATTTCTCTATAATCATGTGGTTAATGC
AATCAAACCCCGGTTGCTGGAGCTAAGGGGTGAAAGGAAAAGAGCACAGTTTAGGGGTGGTGGAGCTGTGCAAAACGTGT
GACTGATGCCTAGCTAGGAAATTACTGCAAAACTAAGTTGGCGGTCGAACAAATTAACCAAATGCATTCATGCGCGACGC
ATGAGAAGCTGGGGCGAGCAAATTAAGCATGGAGGTGCGTAGTTGCCGGACGCGTGCTGCATCTCCAGGCAGCGCGCCAA
CTGATTCAGTTTGTATGTCCGGTGCACTCGA---------------------------TCTGC-----------------
----------CCATATATACCACCTTTCTTCTGCAAAGCCAGCCACACCATCGATCTCCATCTCCACACATTTCATCGGA
GAAGCATGGTTTCCATGGCGGCGGCCAGGATCGCCGTCCTCCTGGCCGTGGCAGCGCTCTTCACCGCGGCGGGGGCAGCG
GATCCCCAACGCGCAAAGGGAGCACATTGCTGGCGGTGCTACTCTTCCTGCATGCACAAGTGCGACGGCCACCGTGATGC
CGCCGCCCGCTCTGCCAGCCGTACTCAGCCCGCAGTCCACACAACCGTCGATGATGGTGCAGCAGCCTCCTCCATCCCCG
TCAACTCTACCAATGGCACTGCAGCAGTCGTACACTCCACCGATGGCACTCTAGCCACTGTTGACAAAACCGATCCAGCA
GTCGGCCACATCGGTGATGCCAAC---------GACGACGATAACAAGGACTACGACAAAGATGACGACAAGGACGACGG
CGATGATAAG------------GACGACAATAAGGACGACAAG---GACGACGACGATGATAAGGACGACAAGGACGATG
ATGATAAGGATGATGATGACGACGACG------------ATGATGATGATGATGATGATGATGACGACGACGACGACGAC
GATGACAACGGCGGCAGCGACTGGGCGAAGTACTTCAAGTGCAAGAAGAAGTGCATCGTGGACTGCTACAGGAGCCT---
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------------CCGCCACCG---CCACCGCCACCACCACCACCAT------CCAAGCCCGGGTCCAAAGCCCCCGAGTC
CGAAGCCACCTA------AGCCAAAGCCAACACCACCAAAGCCCACACCTCCAAAGCCCGCTCCACCTAAGCCCATGCCG
CCGCCATCGCCCACGCCACCGAAGCCAACCCCGCCCATGCCACCACCATCGCCCATGCCACCGACGCCAACCCCGCCCAT
GCCACCGACGCCAACCCCGCCCATGCCGCCACCATCGCCCATGCCACCGACGACAACCCCGCCCAAGCTGCCGAGCCCTC
CTAATACACCGAAGCAAAAGCCAAAGCCGAAGGCGCCCGTGTCCGCTCAAGACTAAGCCTAAGCCAAAACCGCCATGCCC
ACCATCA------------------GCCATTGTATCTTCGTCGACGAACACCAGCAGCAACTGATAGGTGTAAGCCATGA
CGTCTACACGCACATATTTGGAGCAGAGCTCGCAACATATATACAACATATAAGTAGAGAGATTATGGTTGCTGCGTATC
AGTATATATAGATTATTACCCCGGAAAAGAATATAGATTATTCTATAAGGTTACTCTATAGATGAAGAAGTAATTCATCA
GCTCTAGCTAAGCTGGGTATAGA---------------------------------------------------------
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>SNPs
--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------------------------------S----------
-S-------------------SS--S------------S--S------------------------SS------------
S----S----------S-------------------S-----------------------------S------SS-----
-----------S----------S---S-------S----------------S---S------------------------
--S-------------------------------------------------S-----------------S---------
-----S------------------------------------S-S-S-------S---S-----------S---S----S
--------------------------------S---------------S--SSSSSSSS---------------------
-------------------------S-----------S-----------------------S----S--S-------S--
----------SS--------------SS----------------------------------------------------
----------------S-----------------------------S---S--------S----------S---------
------------------------------S----------------SSSSS------S----------SS----S----
---------------S---------------------------------------S-S---SSSSSSSS-SS--------
------------------------------------------S---S---------------------------------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
SS-------------------S-------SSS-----------------------S----------------S-------
------------------S---------SSSSSSSSSSSSSSSSS-----------------------------------
---------------------------------------------------------------------------S-S--
-----------------------------------------S--------------------------------------
------------S--------------------------------------------------------S-------S--
-------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
--------------------------------------------------------------------S------S----
---------SS----------S--------------S-S--S--S-----------------S-----------------
-------------------------------------S-------------------------------S----------
------------S-S--SS--------------S-----------------S----------------------------
---------S-S--------------S--SS-------------------------S----S------------SS----
----S---S----SS--S-S-S--SSSSSSSSS---------S------S-S--S-S--S--------SS-SS---S---
----------S-S--------------S--------S------SSS---------------------S------------
-S--S--S--S------S-S---------S-S--SS--------S----------S--S--S---------S--------
---------S--------------SS------------S----------S---------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--S--------------S---S-----S-----SSSSSS-----------------------------
----------S-SSSSSS----------S--------------------------------------S------------
--S--S-------SSS-S---SS-S-------------------------------------------------------
---S----SS-----------S-S-----SS-S-----------------------------------S----S---S--
-----S---S-----S------------------SS---------SSS--------SS-S--S--S--SS-SSSS-SSSS
S--SSSSSSSSSSSSSSSSSSSSSS----S-------SS------S-----S----S--------S-S-S--SS------
------SS------------S-S-------S-SS-S-------SS---S-SSSS-SSS---SS-----------------
------------------------------------------S--------------------------S----------
-------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_860
--------------------------------------------------------------------------------
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----------------------------------------TTCAGTGCAGGCTGCTAGTC--------------------
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>reverse_2910
--------------------------------------------------------------------------------
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-----------------------------ACCATCACCATCACCACCAC-------------------------------
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>forward_2322
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------AGGACAACAAGGACGACG
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
>reverse_4450
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CGTAGACCAGCAGATCGACC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------
