>input_sequence_34405
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-------------------------------------------------------------------ATGGCTGA-----
------------------------TG---GCAAGTGCGGCGCGGAGGAGGAGGTGGAGGTCGCCGAGCCGCTGGGGCGGT
GGCCCGTGCTGTCCTACGGCGTCGGCCACATGCTCAACGACATCACCTCCGCCTGCTGGTTCACCTACCTCCTCCTCTTC
CTCCAAGAGATCGGCCTCGCCCCAAGGTAC-TACTG---CTGCAGTAACCAATGCAGCCATTTTCATCAGCATA----AA
TATCTTCTGACCCTGACCTGATCGTTCATGCCTTGCAGGGACGCAGCGATCGTGATGCTCTCAGGCCAGGTCGCGGATGG
GCTGATGACCATCGTCGCCGGGGAGATGGTACA-GAAATCAATCCAACTCGATCGAAACTTCGTGTTCTTGCCGCTCGAC
AGTGAGAACCATGATTCCATGAACAATGGCGCCTGAACAACGTGTGCTG------------------TTTGATCACCTCC
CGCAGATCGACCGGTTCGGGCGCTTCAAGCTGTGGCACATCGGGGGCTCGGTCCTCGTCGGCATCTCCTTCTCCTCGGTC
TTCGGCGGGTGCCTCCTCTGCACCATCCTGGGCACCGACTCCTACCTCGTCAGGACCATCGGCTACAGCTTCTTCGCCGC
CGTCTTTAACATCGGCTGGGCGGCCACGCAGGTCTCCCACATGTGAGCAAACGTCCTTGCTTTG----CCTCC---AAAC
TTTGACTGACGAACATTTTACAATCTGACA-AGTGTTTTGAACATTACTGATATTTGGTTGTGTTCCCAATCCTTCTGCC
TTTCAGGTCGATGGTGAACTGCATGACATCCAACCCCACGAGCCGGGTGGCCATGGCGAGCTGCAGAAACGCTTCCACCA
TGGTGAGTCCTTCCTACGACCATGCACGCACGGCCATCTTTCTTGACTTGTCTGCTTTCTCTTTGCTTCACGCCACTGCC
TCATCTCGTGCCAACATGCTTGCCTGTTCTATGATCTCTATTATGTATATACCTGTCACAACGTGACCCTGAAACAAAAA
TATGCTGACAGTGAGTGAGTGTGACAAATTACAGGTGGCTAATCTTGGTCTATATGGCATCGCGTTGGCAGTCTTTGGAA
TAGTGAAGGCAAAGACATGTGCGGACATTGTTGTTCAGGTAACCTTCTCCAAATCAGCTTTGAGTTCTAACATAACAGTA
GCTTGTGAGCAAACGATTCACCGTGATTTTATCTTCGCCCGCAGTACAAGTGGATCGCGTACGTGTCCATCTTCGTGGGG
TGCTGCTTCCTCGTGCTGTTCCACGCTGGAACGGAAGAGCCCACGTATGCTGACTTGCTGAGACTGAAAAAATAGCAGTT
CAGAATGTGCACATAAACAGTGTTTTCTGAAAGAAAATTTTCTTATGGTGTTGCTTGCAGCTTGAAGTGCGAGCCTAACT
GCAAGAAACGGGCTCGGATCGCGTGGAGCTACTGGTTCAACAAGACCCTCTACTACCAAGTCGCCCTCCTCTACATGCTT
GCCAGATTGATCACCAACGTCTCTCAGGTTAACTTACACCCTGCTCTCTAATCGCCCTAGGCTAGATGTTCTTGGTGAAG
ATCATTTCTGGTGGAATTTGATTTCT---------GAAGATTTGCTTCGGCATCATGGTGTGATGAACTTGGATTATGAA
CACTATTGTTCTGTGGTTTGCAGTCGCTCATCGCGTTCTACGTCACCAGAGATCTGAAGATGAACGAATACTCCAAAGCC
ACCGTAAGTTCTTCAGTTCATCACCACCAATTTGAG------------------------TACCGTGATCTTCTTGGTTC
AAGCGTTTGATCTTTGACGACGGGTTTCTGCAGATTCCGGCCATCATATTCTGCTGCAGCTTCTTGGTCTCCGTGGTGCT
CCAGGAGATGAGGTGGAACAGCCGGCGGCTCAAGTCGCTGCTGACGATCGGGGCGACGCTGTGGGTGATCTCCGGCGCGG
CGGTGTTCCTCCTCCCGAGCCAGATGCACAACCTCATGTACCCGCTGGCCGTGGTCATCGGCGCCGCCAACGCGCTGGTC
ATGGTGACCACCATCGGGCTGGAGAGCGCGCTGGTCGGCGAGGACCTCAACGGCTGCGCCTTCGTCTACGGCTCCCTCAG
CTTCCTCGACAAGATGTCCTGCGGCCTCGCGCTCTTCGTGCTCGAGTCCTACGACGTCGCCTCCAGCTGCGGCGAGGAAC
GGGGGCTCAACACCGTCAGCAGGTACGGCACCGGGCTCATCCCGGCCTGCTTCGCCATCCTCGCCATCGTCGTCGCCTCC
ACCCTCAGGCTGCAGGACGACGACGTTGCCCGCGCCGACCGGAGGGCCAGGGCTTCCGCCGCCGC---CGGCGCGCTGGA
AGCTCCGCTCCTCGTCTGA-------------------------------------------------------------
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>chr4A_1_TraesCS4A01G020100
AACAGCCCCAAACAACCCTTGAAAAAAAAAGAAGAGAAGAAGAACCCCAAACAAAGACATAATTAA----TACTGTAAGT
GTAGAGAAAGAAAGGAATTAA----CACTGCTTGACCATCCATGCAGCCGGGGTAAAAAAGGCCGAAACGC---------
------CGGCCCGGAGTCTGAACGGCCCGTTTCCAGTAAGAAAAAAAAGGAAGGCGGAGGAAAAACCTAAAGAAATCGCA
TCGTCTTTGTCCTGTGGCGGCACTGACGACCGCGCGCGGGCGGCGTCGACCGCGCCGTCGCCCTCCTTCCCCACCCCAGG
TCGGGGCCCCCCTTCCCCCCACTCG-------------------CTCGCCTCGCCAGCTACGTCCTATAAATACCACCGC
CTGCCTGCTCATCGGACCAAGCCATC--------------ATTCGCCTCGCCGGCCGCCTCCAC----------------
--------CTCTCG--------CTCCCGGCCGACGTCGGAG-----GCGCCCGGTACGTGCCCGC-------GGCCGCTC
TTGTTCCCCCCTCTTGCGCGCGCGGCGCCTCCTCAGGCCCCGCCATGGCTCGTTCGTTCCTTCGACGAATGCTTTGGTTC
TGTCTTTGATTCGTCCTCTCTCTCCGGGAAGTTTTTTCTTAGAAAGATGCGAGTTCGCTGCTGGGATTCAGGGACGGGTT
GGGTTGA----GGCCGACTGTTTACGGTCCATTCGTTCATTGTGTGTGTCGCGCTGCTGCGAACCACTTTCCTTCCTTAT
TGTCATAATATCGGTTACAGCTATGCGAACTAGTACTACTTCTTGCCTTGTTATTCCAGCAACATTTTAATTACTCCCCA
AATTCACGCCCTCGAACCCCGCCGAAACTTCCGTGCCACACGAATCCCTCCCTTCCAAAGCTAGCTCTTCCGCTGAAGCG
CCTTTAAATAACGCCTGCTCTCGTCTGGTCTGGTCTGGTCTGTGGGCGACTAGCAGCTGCAGTAGTAG---ATGACACAG
CTTCGGCTTTGGTTTTCGCAGGGGTGATTCAGAATCTTGGTTCGTAGCAGAGGTTCCGAACCGAGCCATGGCTGA-----
------------------------TG---GCAAGTGCGGCGCGGAGGAGGAGGTGGAGGTCGCCGAGCCGCTGGGGCGGT
GGCCCGTGCTGTCCTACGGCGTCGGCCACATGCTCAACGACATCACCTCCGCCTGCTGGTTCACCTACCTCCTCCTCTTC
CTCCAAGAGATCGGCCTCGCCCCAAGGTAC-TACTG---CTGCAGTAACCAATGCAGCCATTTTCATCAGCATA----AA
TATCTTCTGACCCTGACCTGATCGTTCATGCCTTGCAGGGACGCAGCGATCGTGATGCTCTCAGGCCAGGTCGCGGATGG
GCTGATGACCATCGTCGCCGGGGAGATGGTACA-GAAATCAATCCAACTCGATCGAAACTTCGTGTTCTTGCCGCTCGAC
AGTGAGAACCATGATTCCATGAACAATGGCGCCTGAACAACGTGTGCTG------------------TTTGATCACCTCC
CGCAGATCGACCGGTTCGGGCGCTTCAAGCTGTGGCACATCGGGGGCTCGGTCCTCGTCGGCATCTCCTTCTCCTCGGTC
TTCGGCGGGTGCCTCCTCTGCACCATCCTGGGCACCGACTCCTACCTCGTCAGGACCATCGGCTACAGCTTCTTCGCCGC
CGTCTTTAACATCGGCTGGGCGGCCACGCAGGTCTCCCACATGTGAGCAAACGTCCTTGCTTTG----CCTCC---AAAC
TTTGACTGACGAACATTTTACAATCTGACA-AGTGTTTTGAACATTACTGATATTTGGTTGTGTTCCCAATCCTTCTGCC
TTTCAGGTCGATGGTGAACTGCATGACATCCAACCCCACGAGCCGGGTGGCCATGGCGAGCTGCAGAAACGCTTCCACCA
TGGTGAGTCCTTCCTACGACCATGCACGCACGGCCATCTTTCTTGACTTGTCTGCTTTCTCTTTGCTTCACGCCACTGCC
TCATCTCGTGCCAACATGCTTGCCTGTTCTATGATCTCTATTATGTATATACCTGTCACAACGTGACCCTGAAACAAAAA
TATGCTGACAGTGAGTGAGTGTGACAAATTACAGGTGGCTAATCTTGGTCTATATGGCATCGCGTTGGCAGTCTTTGGAA
TAGTGAAGGCAAAGACATGTGCGGACATTGTTGTTCAGGTAACCTTCTCCAAATCAGCTTTGAGTTCTAACATAACAGTA
GCTTGTGAGCAAACGATTCACCGTGATTTTATCTTCGCCCGCAGTACAAGTGGATCGCGTACGTGTCCATCTTCGTGGGG
TGCTGCTTCCTCGTGCTGTTCCACGCTGGAACGGAAGAGCCCACGTATGCTGACTTGCTGAGACTGAAAAAATAGCAGTT
CAGAATGTGCACATAAACAGTGTTTTCTGAAAGAAAATTTTCTTATGGTGTTGCTTGCAGCTTGAAGTGCGAGCCTAACT
GCAAGAAACGGGCTCGGATCGCGTGGAGCTACTGGTTCAACAAGACCCTCTACTACCAAGTCGCCCTCCTCTACATGCTT
GCCAGATTGATCACCAACGTCTCTCAGGTTAACTTACACCCTGCTCTCTAATCGCCCTAGGCTAGATGTTCTTGGTGAAG
ATCATTTCTGGTGGAATTTGATTTCT---------GAAGATTTGCTTCGGCATCATGGTGTGATGAACTTGGATTATGAA
CACTATTGTTCTGTGGTTTGCAGTCGCTCATCGCGTTCTACGTCACCAGAGATCTGAAGATGAACGAATACTCCAAAGCC
ACCGTAAGTTCTTCAGTTCATCACCACCAATTTGAG------------------------TACCGTGATCTTCTTGGTTC
AAGCGTTTGATCTTTGACGACGGGTTTCTGCAGATTCCGGCCATCATATTCTGCTGCAGCTTCTTGGTCTCCGTGGTGCT
CCAGGAGATGAGGTGGAACAGCCGGCGGCTCAAGTCGCTGCTGACGATCGGGGCGACGCTGTGGGTGATCTCCGGCGCGG
CGGTGTTCCTCCTCCCGAGCCAGATGCACAACCTCATGTACCCGCTGGCCGTGGTCATCGGCGCCGCCAACGCGCTGGTC
ATGGTGACCACCATCGGGCTGGAGAGCGCGCTGGTCGGCGAGGACCTCAACGGCTGCGCCTTCGTCTACGGCTCCCTCAG
CTTCCTCGACAAGATGTCCTGCGGCCTCGCGCTCTTCGTGCTCGAGTCCTACGACGTCGCCTCCAGCTGCGGCGAGGAAC
GGGGGCTCAACACCGTCAGCAGGTACGGCACCGGGCTCATCCCGGCCTGCTTCGCCATCCTCGCCATCGTCGTCGCCTCC
ACCCTCAGGCTGCAGGACGACGACGTTGCCCGCGCCGACCGGAGGGCCAGGGCTTCCGCCGCCGC---CGGCGCGCTGGA
AGCTCCGCTCCTCGTCTGAATCAGTTCCCGCCCTCTGTTCGTATGTGGGAAAGAATTTGGGAAATGCTGATCCTTTTTCA
ATTAGATTTGAAAAAGGAAGGTAAGATAAGATG--TGCTATCATCGTCGACATGCCGGTGGTAATCGTGTAATGCAGCTC
TTTTCAATTAGATTTGGGAAGATGCTCGTCAGTTGTTTATCACATACCATCAGACAGTCCCAGCTCCAATTTTGAGTG-A
AGTTTCAGGCGCATAATAAAATTCAGGAGTATTTAACGAAAAACTACCACATCTCGTCAAATCGTGCCTATAAAGTACCA
CTTGACAAATTTGTGCCAAAAACTATCACTTTTTAACTAATTTTTTCTCAAAAACACTAGTGATTGCGT-GGCCGAAATT
AAACATGA-TTATGACAGGGTTGGCCCACACGTAGGCGATGACATGGC--ACAGTAGTCAACTCCGTTAGAT--------
------------------TGAC------------CGTTATGACATATGGGGCCCGTATGTCAGTGTTGGTAAAATTTCTC
AAGTTTCTAATGAACATACTAATTACATTTTTTTCTG------------------------------AGAAACACA---T
ACTAAATGCAACTAGTTAGGCTAATCTAACCACGCGGGCCCTGTGGACAGTGGCCCATCTAATCCTAACAAACCACTAAC
CCATCCCT-AAC-CTACCCACTAACCCATCACCTAACCAATTCTT--ACCGCTCGCGCCGCTCTGCCCAGGCCGTCGGTG
GATACGCCGCCGGAATACTGCCGGCCGGGACGCGCCGTGGGAAGGCCCAGGCCGCCGCCCGGTGTCTCGCCGCACCTGCA
GGTCGCGCCACGGGGAGGCCCAGGCCGCCTCCCTATGGCTCGCCTCTCCAGATATGGCCGCGCCATAGCTTTCCTCCTTG
CGCCGACGAGGCCACCGGCCGTCCCCCGTTCATTCTTCATGTCCAGAAGATCCGCCACCTCGCGCCGGTCATTTCCACGG
AAGAACTCGTCCGCGGTTGTACTGCACCAACCGAATGAAGCCGTCTTCCTCGCCGGCACCC
>chr4B_37
------------------------------------AAGAACAACCCCAAACAAGACACAGCTGCTACTGTACTGTAAAT
GTAAGAAAAAAGAAGAATTAATTAGCACTGCTTGACCATGCAGCCGGCCGGGGTAAAAAATGCCGAAACGCCGGTCCGGG
GGAGGGCGGACCGGAGTCTGTACGGCCCGTTTCCAGTA--AAAAAAAAGGAAGGCGGAGGAAAAACCTAAAGAAATCGCA
TCGTCTTTGTCCTGTGGCGGCACTGA--------------CGGCGTCGACCGCGCCGTCGCCCTCCTTCCCCAG----GG
TCGGGGTCCCCCTTCCCTTCCCCCACTCGCTCGCCTCGCCTCGCCTCGCCTCGCCAGCTACGTCCTATAAATATCACCGC
CTGCCCGCTCATCGGACCAAGCCATCCACCATCCCCGCGCATTCGCCTCGCCGACCGCCTCCAC----------------
--------CTCTCTCTCTCTCTCTCCCGGTCGACGTCCAAG-----GGGCCCGGTAAGTGCCCGT-------GGTCGCTC
TTGTTCTTCCCTCCTTAACCTTA-----------AGGCTCCGCCATGGTTC--------------------------TTC
TGTCTTTAATCCGTCCTCCGCGGAGACC---------CTTAGAAAGACGCGGATTCGCTGCTGGGATTCAGGGACGGATT
GGGGGGCCGATTGTGTAGTAGTATATCG---TCCATTCATTGTGTGTGTCGCGCTGCTGCCAACCAGTTTC----CTTAT
CGTCGTCATATCGGTTACCGCTATG-----------TACTTCTTGCCTTATTATTGCAGCAACATTTAT-TTACTCCCCA
AATTCATGCCCTTGAATCCCGCCGAAACTTCCGTGTCACACGAATTCCTTCCAAAATTAGTACTA-CTTCCACTGCAGCG
CCCTTAAATGC-------------CTGGTCTCGTCTGGTCTGTGAGCAACAAGCAGCTGCAGTA---G---ATGACACAG
TTTCGGCTTTGTTTTTTGCAGGAGTGATTCAGAATCTTGGTTCATAGCAGAGGTTCGGAACCGAGCCGGCGGTGGTACTA
CTAG---TGCTGCTGCTCCATGGCTGATGGCAAGTGCGGC---GAGGCGGAGGTGGAGGTCGCCCAGCCGCTGGGGCGGT
GGCCCGTGCTGTCCTACGGCGTCGGCCACATGCTCAACGACATCACCTCCGCCTGCTGGTTCACCTACCTCCTCCTCTTC
CTGCAAGAGATCGGCCTCGCTCCAAGGTTAGTAATG---CTGTAGTAACCAGTGCAGCCATTTTCATCAGCACA----AA
TATCTTCTGAACCTGACCTCATCGTTCATGCCTTGCAGGGATGCAGCTATCGTGATGCTCTCAGGCCAGGTTGCGGATGG
GCTGATGACCATCGTCGCCGGGGAGATGGTACTAAAAATCAATCTAACTCGATCGAAACTTCGTGTTCTTGCCGCTCGAG
AGTGAGAATCA----------------------TGAACAATGTGTGTTG------------------TTTGATCA--TCC
CGCAGATCGACCGGTTCGGGCGTTTCAAGCTGTGGCACATCGGGGGGTCGGTCCTCGTCGGCATCTCCTTCTCCTCGGTC
TTCGGCGGGTGCCTGCTCTGCACCATCCTCGGCACCGACTCCTACCTCGTCAGGACCGTCGGCTACAGCTTCTTCGCCGC
CGTCTTCAACATCGGGTGGGCGGCCACGCAGGTCTCCCACATGTGAGCAGACGTCCTTGCTTTG----CCTCCTTCAAAC
TTTGACTGATGAACATTTTGCAACCTGACACCGTGTTTTGAGCC---CTGATATTCGGTTGCGTTCCCAATCCTTCCC--
-TTCAGGTCGATGGTGAACTGCATGACATCCAACCCCACGAGCCGGGTGGCCTTGGCCAGCTGCAGAAACGCTTCCCCCA
TGGTGAG----TCCTACGACCATGCACGCACGGCCATCTTTCTTGACCGGTTTACTTCCTCTTTGCTTCACGCCACTGCT
TCATCTCGTGCCAACATGCTTGCCTCCTCTATGAGCTCTATTAT----ATACCTGTCACAACGTGACCTTGAGACAAAAA
GATGCTGACCACGAGTGAGTGTGACAAATTACAGGTGGCTAATCTTGGTCTATATGGCATCGCGTTGGCTGTGTTTGGAA
TAGTGAAGGCAAAGACATGTGCAGACATTGTTGTTCAGGTAACCTTGTCCAAATCAGCTTTGAGTTCTAATATAACAGTA
GCTTGTGAGCAAACGATTCACCGTGATTTTATCTTCGCCCGCAGTACAAGTGGATCGCGTACGTGTCCATCTTCGTGGGG
TGCTGCTTCCTGGTGCTGTTCCACGCTGGAACAGAAGAGCCCACGTATG-----TTGCTGGGACAGAAAAAATTGCAGTT
CAGAATGTACAGATAAACAGTGTTTTCTGAAAGAAAAGTCTTCTTGTGTGGTG-TTGCAGCCTGAAGTGCGAGCCTAACT
GCAAGAAACGGGCTCGGATCGCGTGGAGCTACTGGTTCAAGAAGACCCTCTACTACCAAGTCGCTCTCCTCTACATGCTT
GCCAGATTGATCACCAACGTCTCCCAGGTTA----------------------GCACTAGGCTAGATGTTCTTAGTGAAG
ATCATTTCTTGTGGAATTTGATTTCTCGAAATACCGAAGATTTGCTTCGGTATCATG--GTGATGAACTTGGATCGTGAA
GAATATTTTCTGC-TGTTTTCAGTCTCTCATCGCGTTCTACGTCACCAGAGATCTGAAGATGAACGAATACTCCAAAGCC
ACCGTAAGTTCTTCAGTTCATCGGCTACAGCTTCTGCGTTGCCTCACAGGCGCCACGAATTACTGTGATCTTCTTGGTTC
AAACGTCTGATCTTGGACGC---GTTTCTGCAGATTCCGGCCATCATATTCTGCTGCAGCTTCTTGGTGTCCGTGGTGCT
CCAGGAGATGAGGTGGAACAGCCGGCGGCTCAAGTCGCTGCTGACGATCGGGGCGACGCTGTGGGTGATCTCCGGCGCGG
CGGTGTTCCTCCTCCCGAGCCAGATGCACAACCTCATGTACCCGCTGGCCGTGGTCATCGGCGCCGCCAACGCGCTGGTC
ATGGTGACCACCATCGGGCTGGAGAGCGCGCTGGTCGGCGAGGACCTCAACGGCTGCGCCTTCGTCTACGGCTCCCTCAG
CTTCCTCGACAAGATGTCCTGCGGCCTCGCGCTCTTCGTGCTCGAGTCCTACGACGTCGCCTCCAGCTGCGGCGAGGCCC
GCGGGCTCAACACCGTCAGCAGGTACGGCACCGGGCTCATCCCGGCCTGCTTCGCCGTGCTCGCCATCGTCGTCGCCTCC
ACCCTCAGGCTGCAGGACGACGACGTTGCCCGTGCCGACCGCAGGGCCAGGGCTTCCGCCGCCGC---CG---CTCTGGA
AGCTCCGCTCCTCGTCTGAATCAGTTCCCGCGCTCTGTTCGTATGTGGGAAAGAATTGGGGAAATGCAAATCCTTTTTCA
ATTAGATTTGAAAA-GGAAGGTAAGATAAGATG--TACTATCATCGTCGACATGC-------------------------
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>chr4D_167
TTTCCAGCAA----------------------------------------------------------------------
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-------------------------------------AACAAAAAAAAGGAAGGAGGAGGAATAACCTAAAGAAATCGCA
TCGTCATTGCCCGGTGGCAGTGACG----------GCGGGCGGCGTCGACCGCGCCGTCGCCGTCCCTCCTT-CCCCAGG
TCGGGGTCCCCCTTCCCTTCCCCCACTCGCTCGCCTCG----------CCTCGCCAGCTACGTCTTATAAATACCACCGC
CTGCCTGCTCATCGGACCAAGCCATCCACCATCCCCGAGCATCCGCCTCGCCGACCACCTCCGCCTCCACCTCTCTCTCT
TTCTCTCTCTCTCTCTCTCTCTCTCCCGGTCGACGTCCAAGCGGAGGCGCCCGGTACGTGCCCGCCGCCCGCGGTCGCTC
TTCTTCTTCCCTCCTTAACCTTA-----------AGCCTCCGCCACC-----------------------GCCATGGTTC
TCTCTTCAATTCCTCCTCCAAGGAGAGC---------CTTAGAAAGATGCGGATTCGCTGCTGGGATTCAGGGACGGATT
GGGTTGGGGCCGGCCGATGGTTTACCGTCCATCCATTCATTGTGTGTGTCGCGCTGCTGCGAACCAGTTTCCTT------
-GTCGTCATATCGGTTACCGCTAGTATAG-TAGTACTACTTCTTGCCTTGTTATTCCAGCAACATTTTAATTACTCCCCA
AATTCACGCCCTTGAATCCTGCCGAAACTT---------------CCCTCCCTTCCAAAACTAGCTCTTCTGCTGGAACG
CCTTTAAATAATGCT----------TGGTTTGCTCCGGTCTGTGAGCAACAAGCAACTGCAGTA---GTAGATGACACAG
TTTCGGCTTTGTTTTTTGCAGGAGTGATTCAGAATCTAGGTTCGTAACAGAGGTTCGGAACCCAACCGGCGGCACTACTG
CTGCTGCTGCTGCTGCTCCATGGCTG---GCAAGTGCGGC---GAGGAGGAGCTGGAGGTCGCCGAGCCGCTGGGGCGGT
GGCCCGTGCTGTCCTACGGCGTCGGCCACATGCTCAACGACATCACCTCCGCCTGCTGGTTCACCTACCTCCTCCTCTTC
CTGCAAGAGATCGGCCTCGCTCCAAGGTAC-TACTACAACTCTAGTAACCAATGCAGCCATTTTCATCAGCATGCATGAA
TATCTTCTGAACCTGACCTGATCGTTCATGCCTTGCAGGGATGCAGCTATCGTGATGCTCTCAGGCCAGGTCGCAGACGG
GCTGATGACCATCGTCGCCGGAGAGATGGTACT-AAAATCAATCTAACTCGATCAAAACTTCCTGTTCTTGCCGCTCGAC
AGTGAGAATCA----------------------TGAATAATGACGCCTGAACATTGTGTTGTTTGACTTTGATCA--CCC
CCCAGATCGACCGGTTCGGGCGTTTCAAGCTGTGGCACATCGGTGGGTCGGTCCTCGTCGGCATCTCCTTCTCCTCGGTC
TTCGGCGGGTGCCTGCTCTGCACCATCCTCGGCACCGACTCCTACCTCGTCAGGACCATTGGCTACAGCTTCTTCGCCGC
CGTCTTCAACATCGGGTGGGCGGCCACGCAGGTCTCCCACATGTGAGCAAACGTCCTTGCTTTTGCCTCCTTC---AAAC
TTTGACTGATGAACATTTTACCATCTGACAGAGTGTCTTGAACACTACTGATATTCGGTTGTGTTCCCAATCCTTATGGC
TTTCAGGTCGATGGTGAACTGCATGACGTCCAACCCCACGAGCCGGGTGGCCTTGGCGAGCTGCAGAAACGCTTCCACCA
TGGTGAG----TCCTACGACCATGCACGCACGGCCATCTTTCTTGACCGGTTTGCTTTCTCTTTGCTTCACGCCACTGCT
TCATCTCGTGCCAACATGCCTGCCTCCTCCATGAGCTCTATTAT----ATACCTGTCACAACGTGACCTTGAAACAAAAA
GATGCTGACCACGAATGAATATGACAAATTACAGGTGGCTAATCTTGGTCTATATGGCATCGCGTTGGCTGTGTTTGGAA
TAGTGAAGGCAAAGACATGTGCAGACATTGTTGTTCAGGTAACCTTGTCCAAATCTGCTTTGAGTTCTAATAG--CAGTA
GCTTGTGAGCAAACGATTCACCGTGATTTT-TCTTCACCCGCAGTACAAGTGGATCGCGTACGTGTCCATCTTCGTGGGG
TGCTGCTTCCTGGTGCTGTTCCACGCTGGAACAGAAGAGCCCACGTATGCCGACTTGCTGACACTGAAAAATTAGCAGTT
CAGAATGTACAGATAAACAGTGTTTTCTGAAAGA-AAGTCTTCTTGTGTGGTG-TCGCAGCCTGAAGTGCGAGCCTAACT
GCAAGAAACGGGCTCGGATCGCGTGGAGCTACTGGTTCAAGAAGACCCTCTACTACCAAGTCGCTCTCCTCTACATGCTT
GCCAGATTGATCACCAACGTCTCCCAGGT-----------------------------AGGCTAGATGTTCTTAGTGAAG
ATCATTTCTTGTGGAATTTGATTTCGTAAAACACCAAAGATTTGCTCCGGTATCATG--GTGATGAACTTGGATTATGAA
TACAATTGTTCTGTTGTTTCCAGTCGCTCATCGCGTTCTACGTCACCAGAGATCTGAGGATGAACGAATACTCCAAAGCC
ACCGTAAGTTCTTCAGTTCATCACCACCAATTTGAG------------------------TACTGCGATCTTCTTGGTTC
AAACGTTTGATCTTGGACGAC---TTTCTGCAGATTCCGGCCATCATATTCTGCTGCAGCTTCTTGGTGTCCGTGGTGCT
CCAGGAGATGAGGTGGAACAGCCGGCGGCTCAAGTCGCTGCTGACGATCGGGGCGACGCTGTGGGTGATCTCCGGCGCGG
CGGTGTTCCTCCTCCCGAGCCAGATGCACAACCTCATGTACCCGCTGGCCGTGGTCATCGGCGCCGCCAACGCGCTGGTC
ATGGTGACCACCATCGGGCTGGAGAGCGCGCTGGTCGGCGAGGACCTCAACGGCTGCGCCTTCGTCTACGGCTCCCTCAG
CTTCCTCGACAAGATGTCCTGCGGCCTCGCGCTCTTCGTGCTCGAGTCCTACGACGTCGCCTCCAGCTGCGGCGACGCCC
GCGGGCTCAACACCGTCAGCAGGTACGGCACCGGGCTCATCCCGGCCTGCTTCGCCGTGCTCGCCATCGTCGTCGCCTCC
ACCCTCAGGCTGCAGGACGACGACGTTGCCCGTGCCGACCGCAGGGCCAGGGCTTCCGCCGCCGCCGGCG---CGCTGGA
AGCTCCGCTCCTTGTCTGAATCAGTTCCCGCGCTCTGTTCGTATGCGGGAAAGAATTTGGGAAATGCTGATCCTTTTTCA
ATTAGATTTGAAAA-GGAAGGTAAGATAAGATGTATACTATCATCGTCGACATGCCGGTGGTAATTGTGTAATTCAGCTC
TTTCCAATTAGATTTGGGAAGACTGCACTAGTCGTCCTGTTGTTCAT-------CAGTCGCAGCTCCAATTTTGAGTAAA
AGATTCAGGCGCACAATAAAATCCAG------------------------------------------------------
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>chr1A_3569
TTCCGGTAGTG---------------------------------------------------------------------
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------------------------------ATTTAACGAAAAACTATCACATTTCGTCGAATCGTGCCTACAAACTATCA
CTTTACAAATTTGTGCCAAAAACTATCACTTTTTGACTAATTTTTCCTTAAAAACACTAGTGACTGCTTCGGCCGAAATT
AAACGTGA-TTATGACAGGGTTGGCCCACACGTAGGCGATGACATGGC--ACAGTAGTCAACTCCGTTAGAT--------
------------------TGACCGTTATGTTGACCGTTATGACATGT-GGGGCCGTATGTCAGAGTTAGTAAAATTTCTC
AAGTTTCTAATGAACATACTAATTACTTTTTTTTCTG------------------------------AGAAACACG---T
GCTAAATGCAACTAGTTAGGCTAATCTAACCACACGGGCCCTGTGGATAGTGGCCCATCTAATCCTAACAAACCACTAAC
CTATCCCT-AAC-CTACCCACTAACCCATCACCTAACCAATTCTT--ACTGCTCGCGCCGCTCTGCCCAGGCCGTCAGTG
GCTGCGCCGCCGGAGTACTGCCGGCCGGGACACGCTGTGGGGAGGCCCAGGCCGCCGCCCGGTGTCTCGCCGCACCTGCA
GGTCGCGCCGCGGGGAGGCCCAGGCCGCCTCCCTATGGCTCGCCTCTCCAGATGCGGCCGCGCCATAGCTTTCCTCCTTG
CGCCGACGAGGCCACCGGCCGTCCCCCGTCCATTCTTCATGTCCAGAAGATC-GCCACCTCGCGCCGGTCATCTCCACGG
AAGAACTCGTCCGCGGCTGTACTGCACCAACCGAATGAAGCCGTCTTCCTCGCCGGCACCC
>chr1D_3572
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------------------------AGGAGTATTTAA-CAAAAACTACTACATTTCGTACAACCGTGTCTAAAAATTGCCA
CTTCACAAATTTGTACCGAAAACTACCACTTTATGATTATTATTTTTTCTAAAACACTAGTCATTGCTTCGGCCGAAATT
AAAGATGATTTATGACAGAGTTGGCCCACACGTAGGCGTCGACATGGCAAACAGTAGTCAACTCCGTTAGAT--------
------------------TG--------------------------TGAAGCCCGTATGTCAGTCTTAGTAAAATTTCTC
GAGTTTTTAATGAACATACTAATTACCTTTTTTCCCG------------------------------AGAAACACGCGGT
ACTAAATACTGCTAGTAAGGCTAATCTAACCACGCGAGCCCAGTGGTCAGTGGCCCATCTAATACTAACAAACCACTAAC
CTATCTCTAAAC-CTACCCACTAACCCATCAACTAACCAAATCTT--ACCGCTGGCGCCGCTCTGCCCAGGCCGTCGGCG
GCCGCGCCGCCGGCTGT--------------GTGCCACGGGGATGCCCTGGCCACCGCCCGGTGGCTCGCCGCGCCTGCA
TTTCGTGCCGCGGAGAGGCCCATGCCGCCGCCCTATGGCTCGCCTCTCCAGATGCGGCCGCGCCATAGCTCTCCTCCTCG
CGCCGACGAGGCTACCGGCCATCCCCCGTCCATCTGTCATGTCCAGAAGATCCGTCACCTCGCGCCGGTCATCTCCACGG
AAGAACTCGTCCGCGGCTGCACTGCACCAGCCGAATGAAGCCGTCTTCCTCGCCGGCACCC
>chr5D_3573
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-------------------------GGAGTATTTAACCAAAAACTACCACATTTTGTGCAATCGTGCCTACAAACTATCA
CTTTACAAACTTGTACCGAAAACTACCCCTTTACGACTAATCTCTGACTAAAAACACTAGTGACTGCTTCGGCAGAAC-T
AAACATGA-TTATGACAGTGTTGGCCCACACGTAAGCGTCGACGTGGCAAACAATAGTCAACTCCGTTAGAT--------
------------------TGAC------------TGTTATGACATGT-GGGCCCGTATGTCAGTCATAGTAAAATTTCTC
TAGTTTTCAATGAACATACTAATTACTTTTTTTTCAGGAACACTTA--------------------------------GT
ACTAAATACTGCTAGTAAGGCTAATCTAACCACGCGGGCC-AGTGGTCAATGGCCCATTTAATACTAACAAACCACTAAC
CTATCCCT-AAATCTACCCACTAACCCATCACCTAACCAAATCTT--ACCGCTAGCGCCGCTCTGCCCAGGCCGTCGGTG
GCCGCATCGCCGGAGTACAGCCGGCCGGGACGTGCCGCGGGGATGCCCAGGCCACCGCCCGGTGGCTCGCCGTGCCTGCA
TTTCGCTCCGCGGGGAGGCCCATGCCGCCGCCCTATGGCTCGCCTCTCCAGATGCGGCCGCACCATAGCTCTCCTCCTCG
CGCCGACAAGGCCACCGGCCATCTCCCGTCCATCCGTCATGTCCAGAAGATCCGCCACCTCGCGCCGGCCATCTCCATGG
AAGAAATCGTCCGCGGCTGCACTGCACCAGCCGAATGAAGCTGTCTTCCTCGCCAGCACCC
>chr5D_3573
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-------------------------GGAGTATTTAACGAAAAACTATCACATTTCGTCGAACCGTGCCTACAAACTACCA
CTTTACAAATTTGTGTCGAAAACTACCACTTTTTGAATATTTTTTCCCC-AAAACACTAGTGACTGCTTCGGCTGAAATT
AAACATGA-TTATGACAGGGTTGACCCACACGTAGGCGCTGACATGGCA--CAATAGTCAACTTCATTAGATTGACCGTT
ATGTCGACCGTTATGATATG--------------------------TGAGGCCCGTATGTCAGTGTTAGTTAAATTTCTC
AAGTTTTTAATGAACATACTAATTACTTTTTTCTCAAGAAATACGTACTAAATACAACATTTTTTTTAGAAATACG---G
CCTAAATACAACTAGTTAGGCTAATCTAACC-CGCGGGCCCAGTGGTCAGTGGCCAATCTAATCCTAACAAACCACTAAC
CTATCCCT-AAC-CAACCCACAAACCCATCACCTAACCAAATCTCTCACTGCTCGCGCCGCTCTGCCCAGGCCGTCGGTG
GCCGCGCCGCCGGAGTAATGCCGACCGGGACGTGCCGTGGGGAGGCCCAGGCCGCCGCCCGATGGCTTGTCGCGCCTGCA
GGTCGCGCCGCGGGGAGGC-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>SNPs
SS-S-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSS-----S------------SSSSSSSS-SSS------------S-
---SSS---S-S-S-------------------------S--SS-S--------------S-------------------
---------S----------S------------------S----------------------------------------
--------------------------SSSSSSSSS---------------------------------------------
------S----------SS-S-S-S-------------------------------------------------------
-----------------------------------------------------S--------------------------
-------------S---------------S-------SS-----------------------------------S-----
------SS-----S-SSS-SSSSSSSSSSSSSSS----S---------S--SSSSSSSSSSSSSSSSSSS--SS------
-------S----------SSSSSSSS-SSSSSSSSSS--------------SS------------------------S--
------S----------S-------S------S-S-------------------------------S-------S-----
S---S-S-----------S------SS-SS--------------------------------------------------
------------S---S------------------S---------------------------------------S----
-----------S--SSSSSSSSSS--------------------S--S--S-------------SSS-------------
S----------S----S-----S---------------------------------S----------SSS-S--S-----
----------------------------------------SSS-------------------------------------
--------------------------------------------------------------------------------
--S-----------------S---------------------S-------------------------------------
----------S------------------------------S-----S--------------------------------
--------------------------------S-S---------S-----------------------------------
--------S--SSSSSSSSSSSSSSSSSSSSSS-------S----------------------------------SS---
----------------------S-----------------------S---------------------------------
--------------S--------------S--------------------------------------------------
------S--------S----------------------------------------------------------------
---------S----------------------------------S----------S----------------------S-
----------------------------------------------------S---------------------------
-------SSSS------------------------------------SS--S---------------------------S
-------------------------SS-------S---------SSSS--------------------S-----------
S--------SSS---------------------------------------------------------S--S-------
----------------------S-----------------------S-----------------------S---------
--------------------------------------------------------------------------------
-----------S--------------------S-----------------S-----------------------------
--------S--S-------------------------S-S-SS-SSS---S--S-------S------------------
----------------------------------------S-----------------------S---------------
-----------------------S-------SSSSSSSSSSSSSSSSSSSSSS--S-----------------S------
---------S----------------------------------------S------SS---------------------
S-------------S----S------------------------------------------------------------
---------------------------------------------------------------S----------------
--S-----------S------SS---------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SS-
-S------------------------------------------------------S-S---------------------
--------------------------------S--------S----------------------------SSS-------
-------------------------------S------------------------------------------------
--------------S---------------------S----------------------------S-------S------
---S------------------SSSSSS-SSSSSSSS-S-SSSSS-SSSSSSSS-----S-----------------S--
--S----------S--------S-----------------------------S-----S-----------S---S-----
---S------------------------------S--------------------------------S------------
--------------------------------------------------------------------------------
---------------------------------------------S---------------------S------------
--------------------------S------------------------------------------------S----
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-S-S----------S--------------------------S--------------------------------------
---------S-------------------------------------------SS-------------------------
-----------------------------S------------------------------------------S-------
----------------S--------------------------------------------
>forward_23
---AGCCCCAAACAACCCTTGAA---------------------------------------------------------
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>reverse_1542
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---------------------AACAATGGCGCCTGAACAAC---------------------------------------
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>forward_672
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------------GTCCTCTCTCTCCGGGAAGT------------------------------------------------
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>reverse_2534
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-----------------------------------------------------CTTGCAGCTTGAAGTGCGAG-------
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>forward_1561
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---------------------AACAATGGCGCCTGAACAAC---------------------------------------
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>reverse_2683
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------------------------------------------GCTCTCTAATCGCCCTAGGC------------------
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>forward_2263
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---TGAAGGCAAAGACATGTGCG---------------------------------------------------------
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>reverse_3727
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----------------------------------------------CCATCAGACAGTCCCAGCTC--------------
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-------------------------------------------------------------
