>input_sequence_34402
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATGGCGGAGCAGCCGCACGCCGAGGACGCGGG
CCACAAGCCGGAGACCCTGATGGAGAAGATCGCCGACAAGCTCCACGTCGGCGGCGGCGACCACTCCTCCTCGTCCTCCG
ACTCCGACAAGGAGGAGCAGCCGCGCCCCTCGGCTCCGCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCGGCCGCCTCC
GAGGTCACCACCGCCTCCTTCGCCGCCTCCGCCACCGCGGCGGCGGCCGACGCCAAGAACAAGATGTTCCGCCTCTTCGG
CCGCGAGCAGCCCATCCACAAGGTCCTCGGCGGAGGCAAACGTATGGCCC-ATTACCGATCTAACCGATGCTCGTTTTTT
AGTGCCTTTGCTTGAAACGCGTAGATCGGATCGGAATATGTGGATCTGGACGGGTTTGGGTCTTGGGTTTCGTACTAGAT
CTGGT-----------ATTGGGTAGTGCAGGTGAGGTTTAAGCCTTCTTTTTTTTGGGCGGCTGGGTTTGTTCAGATCCA
CAGGGACGGCGCGTCACCAAAGCCAACGCAACTGCAGCGACCTGATTTACGCTTGTGGTTTCGAATTTGGTCAATGCAGG
CTGTCTTCGTATGAGTTTTGCCGTGATTGTGCGATCTGATCTTCAAGATTCCCCCCTTGTGTTTATGGTGCTAATAAAAT
GGATACT--------------------------------------GTCCATATGGCTGGGCTGCTAAAATAGGATATTAA
TATTCCATATGGTTGGGCTGCTAAAATAGGATATTACTATTAATAGTACCGTTGAGCATTACCTGCGCTTGAATCTATG-
TTGTCAGTTTGTGGCAGAATCATCCTCAGGCGCTCAGTGAATTCTCTGCTGTGTCCTTGCTAAGTCGCTAGTGTATAGAA
ACATTGTTTCTTGTATGAGAATTATCATCATATATGACTTCTAGGTTTGTTTTCTCTGAATTTTAAATAAAGAAACAGTA
AATCTTGTGGTGTTATTGCTACTTCTTCCCTTTCTCAAACTTCCAAACATTTTGGAAATATTGAAGTTCAGCTTAAGATT
CTCTATAGAATTACCATGATTTTGGAGCACCTATGCGCCATTAGTCGTTACACATTGCAATATAACTAATACTCATGGAC
TAAAGAAATAGAACTACAATGTGGTTTCTGTGTATGGTACATTTGTGTCTTGT--TTTTTGCTTTGTACTTGAGCTGTTA
ACCATAGGCTGAAAACATGCAAATCTAGAGGGCATCCTTACTCTGTTGCGAATCCTTAATGGGTAGCAGAGGTTAAACAC
CTAGTTGTGTTTTCTTGCCTTCCATTGTCACTCCATAAATTTTCGCAGACCATCCTGCAATTTTTTTGAACTGTTATATT
CTATTTCTACTCCTTAAACACTGCCAAATTTTATCCCCGTCTTGTATTATATTGTGATTAAGGTGTCATTTGTGAGCACA
TGCTATGTAATTTCATGATCTGCCAATCTTGCTGTTGTATTCACTTTGTTTCTCTATTCTGCAGCTGCTGACGTGTTTAT
GTGGAGGAACAAGCACATCTCTGCTGGAGTACTAGGTGGTGCAACTGCAATCTGGATCCTTTTTGAATTGCTTGGCTACC
ATCTTCTGGCTTTCCTTGGCCATGCTCTCATATTCTCTCTGGGTGTTCTCTTTCTATGGTCTAATGCCTCATCATTCATT
AACAAGTAAGCTATCTTCATCTCAGTATCACAGATTACATGTGCATACCCTTGCACGTTCAAGAGCTAGTACTTCAAAAT
GAGTTCTAAATTCTGCCACACATTTCAGGTCTCCCCCAAGGATTCCCGAGGTGATCATTCCTGAAGATCTGGTTGTCAAC
ATTGCACTATCTACACGTCATGAGATCAACAGAGCCTTCGCAAACCTTCGTCAGATTGCTCTTGGCCGCGACATAAAGAA
GTTCCTTATTGTATGTCTGTTCTGCCATTGTTTACCAAGCGTTGTTCCTACATCAATCTGGATTTACCTCATTTAACTAT
TTTTTACAAAATTGTAGGTGATTGCTGGTCTATGGCTGCTTTCCATTCTTGGTAGTTGCTGCAACTTCTTGACGCTGTTC
TACATTGGTGAGGGATCTCAACTGAGTATACCATTTTTAGCACCTCTTCTTCCCAATGTGGATTTGGTTTTTACAGTGGA
TCTTTCTCTTCTATGTCAAACAGTTTTTGTGGTTCTGCACACAGTGCCAGTAATCTACGAGAAGTATGAAGATCAGATTG
ATACCTATGGCGAGAAGGGGTGGATTGAGGTTAAGAAACAGTATGCTGTGTTTGATGCCAAGGTTTTGAGCAAAGTGCCG
AGGGGCCCCTTGAAAGACAAGAAGAACTAG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3A_1_TraesCS3A01G151200
TGTGCTAGGGCAGTAGTCTTACGTGGAGCGTAGTACATGCTCTTATGCTCCATGAGTGTGTAGGCTGAGAGGTACTAGCA
CTCGTCTCGACCTACACTTTTTGTCTAGTGATGCATCACACTCATTAGTGTGGTGACCAGACCAAATGGCAATGAGAGCT
AGCGACAACTGTGTACAAAGTGGTAGGGTGAGCAGTGGGTTAAGCCGCGGTGGTGTGCACGCAATGAGGGAGATGGAGTA
AGTAGCAATAATCCAAGGTTGAATTGTTACACATGGGCAATGAAAATATAATAAATCAATTAGGGCTTAAACTTCTACTT
TCTTTAGAGTTTATTAGGCAGTATTTTCCAAAAAAAGCAGTCAAGAAACATTAACAACGACCCTAAATTCATAAGAAGAG
ATGAATAGGATATTCCTTTCATGGGCTGAGTTGGATGGACGGTTTCTTAAGAAAGGCATTTTGCAAGGCATCTCGTCCAA
TCCTGGGATTGAAAATCACACGCACCATTAAATGAAAGTTTTTTCAACGTTACACTAAAATAGTGCATCATGTAACACTG
CGGTAGAACACACATCAATCTTTAGCATAACCAAAGCCAAAAATCAACTCAACATCCAACCAACTCAAGGCCATTGGGAG
TAATTCATCTCCACATTTCACGAGACCCCAAGCTATTCCTTTTCCTGTGGATTT---TTTTACTTCGGCGCTCGTGTACA
CGAAGCATTTCCCTTCAAACTCTACAGCCATGCCAGGGGACATGTTGGTCCGTGGCAAAAGCACCCCGCCGTCCGCCCTG
AA-CCCCGCCCCGGCCGCTCCCGGCCGTCCAATCCAAAACCAACGTCCCCGATCCTCCGATCAGACCTAAA-CCCCATCC
CATCTATAAAACCCCACCACGCCAGAGCACCTCCTCCCCCGCATTCTCTTGCCCCTCAACTCCCACGCGCACCGGCACCA
CCCCTTTTCTTGCGG---AGCAGCGTGAGGGTTTCGGAAAGCTAAGCCATGGCGGAGCAGCCGCACGCCGAGGACGCGGG
CCACAAGCCGGAGACCCTGATGGAGAAGATCGCCGACAAGCTCCACGTCGGCGGCGGCGACCACTCCTCCTCGTCCTCCG
ACTCCGACAAGGAGGAGCAGCCGCGCCCCTCGGCTCCGCCCGCCCCCGCCCCCGCCCCCGCCCCCGCCCCGGCCGCCTCC
GAGGTCACCACCGCCTCCTTCGCCGCCTCCGCCACCGCGGCGGCGGCCGACGCCAAGAACAAGATGTTCCGCCTCTTCGG
CCGCGAGCAGCCCATCCACAAGGTCCTCGGCGGAGGCAAACGTATGGCCC-ATTACCGATCTAACCGATGCTCGTTTTTT
AGTGCCTTTGCTTGAAACGCGTAGATCGGATCGGAATATGTGGATCTGGACGGGTTTGGGTCTTGGGTTTCGTACTAGAT
CTGGT-----------ATTGGGTAGTGCAGGTGAGGTTTAAGCCTTCTTTTTTTTGGGCGGCTGGGTTTGTTCAGATCCA
CAGGGACGGCGCGTCACCAAAGCCAACGCAACTGCAGCGACCTGATTTACGCTTGTGGTTTCGAATTTGGTCAATGCAGG
CTGTCTTCGTATGAGTTTTGCCGTGATTGTGCGATCTGATCTTCAAGATTCCCCCCTTGTGTTTATGGTGCTAATAAAAT
GGATACT--------------------------------------GTCCATATGGCTGGGCTGCTAAAATAGGATATTAA
TATTCCATATGGTTGGGCTGCTAAAATAGGATATTACTATTAATAGTACCGTTGAGCATTACCTGCGCTTGAATCTATG-
TTGTCAGTTTGTGGCAGAATCATCCTCAGGCGCTCAGTGAATTCTCTGCTGTGTCCTTGCTAAGTCGCTAGTGTATAGAA
ACATTGTTTCTTGTATGAGAATTATCATCATATATGACTTCTAGGTTTGTTTTCTCTGAATTTTAAATAAAGAAACAGTA
AATCTTGTGGTGTTATTGCTACTTCTTCCCTTTCTCAAACTTCCAAACATTTTGGAAATATTGAAGTTCAGCTTAAGATT
CTCTATAGAATTACCATGATTTTGGAGCACCTATGCGCCATTAGTCGTTACACATTGCAATATAACTAATACTCATGGAC
TAAAGAAATAGAACTACAATGTGGTTTCTGTGTATGGTACATTTGTGTCTTGT--TTTTTGCTTTGTACTTGAGCTGTTA
ACCATAGGCTGAAAACATGCAAATCTAGAGGGCATCCTTACTCTGTTGCGAATCCTTAATGGGTAGCAGAGGTTAAACAC
CTAGTTGTGTTTTCTTGCCTTCCATTGTCACTCCATAAATTTTCGCAGACCATCCTGCAATTTTTTTGAACTGTTATATT
CTATTTCTACTCCTTAAACACTGCCAAATTTTATCCCCGTCTTGTATTATATTGTGATTAAGGTGTCATTTGTGAGCACA
TGCTATGTAATTTCATGATCTGCCAATCTTGCTGTTGTATTCACTTTGTTTCTCTATTCTGCAGCTGCTGACGTGTTTAT
GTGGAGGAACAAGCACATCTCTGCTGGAGTACTAGGTGGTGCAACTGCAATCTGGATCCTTTTTGAATTGCTTGGCTACC
ATCTTCTGGCTTTCCTTGGCCATGCTCTCATATTCTCTCTGGGTGTTCTCTTTCTATGGTCTAATGCCTCATCATTCATT
AACAAGTAAGCTATCTTCATCTCAGTATCACAGATTACATGTGCATACCCTTGCACGTTCAAGAGCTAGTACTTCAAAAT
GAGTTCTAAATTCTGCCACACATTTCAGGTCTCCCCCAAGGATTCCCGAGGTGATCATTCCTGAAGATCTGGTTGTCAAC
ATTGCACTATCTACACGTCATGAGATCAACAGAGCCTTCGCAAACCTTCGTCAGATTGCTCTTGGCCGCGACATAAAGAA
GTTCCTTATTGTATGTCTGTTCTGCCATTGTTTACCAAGCGTTGTTCCTACATCAATCTGGATTTACCTCATTTAACTAT
TTTTTACAAAATTGTAGGTGATTGCTGGTCTATGGCTGCTTTCCATTCTTGGTAGTTGCTGCAACTTCTTGACGCTGTTC
TACATTGGTGAGGGATCTCAACTGAGTATACCATTTTTAGCACCTCTTCTTCCCAATGTGGATTTGGTTTTTACAGTGGA
TCTTTCTCTTCTATGTCAAACAGTTTTTGTGGTTCTGCACACAGTGCCAGTAATCTACGAGAAGTATGAAGATCAGATTG
ATACCTATGGCGAGAAGGGGTGGATTGAGGTTAAGAAACAGTATGCTGTGTTTGATGCCAAGGTTTTGAGCAAAGTGCCG
AGGGGCCCCTTGAAAGACAAGAAGAACTAGAAATGAGTGGTACCGTGT-------------AATGATGGTGACTGGTTCG
TGGCTGCCCTTGTGGTCTGAGCACCAAATTTCTCACCAGTTGTCTTGTGTTATGT--AAGGCTGTTTTCATTGTTTGCGA
CTTTGATGAGAGTAGCCCTGGGTAGCTTACCCTCCAACAGTAATGCAGAGGCAGCACTTGTTTCGCTGTACCGCTGTTTG
ATTTTTGATCTGTTAAGGTGTCGCATGGGTACGGTTTCTAGACGCTGATTTTGCTACTTGCGTTGCTGCAGTTTGGAGTA
TTGATGATGTTT-GTCAACTCGTTGGGCTTTAGATGTCATC---TACTCGTTTCTATTGTACTACT---ATCACTGTTGC
AACACAACTTT------TATTAAAGCCCAGTCTGCGTGTGTTGGTCTCAAACATTGTGCTACATATTCATATGTCAGGAC
TGCAGCGGGAAGTGTTATTTCTTCAGTTAGCGCTAGTTGCGGCTACAGATAACGATTCAGTAGATGGAGGGTTGAGATCG
AGCCTCGCTTTACCGTTCTGTGTCAACCGTTAGATGTCTACTGTTCCGTTTCAATCGTTACTGTTACGTTTCACCTGTTG
CCGGGAGGCTTTCCATCTATAAAGGCAGCCGGGTTGTGGCTGGCCAGACCATGGAATCTTCTTTATGAATTGCCTATATG
GCCAACTACTCTACAGCTAATACACACACAGCCCGATCTGGGTGAACTTTTCCCCAATTCGTCTTCCATCTCTCTCCTTC
TTGATCATCTCTATAGCTTGGTCTTGACAAAGAGGCTTTCCATCTATAAAGGCAGCCGGGTTGTGGCTGGCCAGACCATG
GAATCTTCTTTATGAATTGCCTATATGGCCAACTACTCTACAGTTAATACACACACAACCCGATCTGGGTGAACTTTTCC
CCAATTCGTCTTCCATCTCTCTCCTTCTTGATCATCTCTATAGCTTGGTCTTGACAAATAAATTGGTATTCAGAGCAAGG
TTTTTCCTCGGCCACAAA
>chr3B_682
TTCCTTGTGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTTGGTTTTCCTCGTGTGCTCGTGTACA
CGAAGCATTTT-CTTCAAACTCTAC--------CAGGGGACATGTTGGTCCGTGGCAAAAGCACCCCGCCGTCCACTCTG
AGTCCTCTCCCCGCTCGCTCTTGGCCGTCCAATCCAAATCCAACGTCCCCGATCTTCCGATCAGACCTAAA-CCC-ATCG
CATCTATAAAACCCCACCACGCCAGAAATCCTCCTCCCCCGCATTCTCTTCCCCTTCAACTCCCACGCGCACCGGCACCT
CCCCTTTTCTTGCGGAGGAGCAGCGTTAGGGTTTCGGAAAGCTAAGCCATGGCGGAGCAGCCGCACGCCGAGGACGCCGG
CCACAAGCCGGAGACCCTGATGGAGAAGATCGCCGACAAGCTCCACGTCGGCGGCGGCGACCACTCCTCCTCCTCGTCGG
ACTCCGACAAGGAGGAGCACCCGCGCCCCTCGGCCCCGCCCGCCCCCGCCCCCGCCCCCG------------CCGCCTCC
GAGGTCACCACCGCCTCCTTCGCCGCCTCCGCCTCCGCGGCGGCGGCCGACGCCAAGAACAAGATGTTCCGCCTCTTCGG
CCGCGAGCAGCCCATCCACAAGGTCCTCGGCGGAGGCAAACGTATGGCCCCATTACCGATCTAACTGATGCTCGTTTTTT
AGTGACTTTGCTT-AAACGCGTAGATCGGATCGGATTATGTGGATCTGGACGGGTTTGGGTCTCGGGTTTCGTACTAGAT
CTGGTATAAGGCACTGATTGGGTAGTGCCGGTGAGGTTTAAGCCTTCTTTTTT--GGGCGGCTGGGTCTGTTCAGATCCA
CAGGGACGGTGCGTCACCAAAGCCAACGCTACTGGAGCGACCTGATATACGCTGTTGGTTTCGAATTTGGTCAATGCAAG
CTGTCTTCGTATGGGTTTTGCTGTGGTCGTGCGATCTGATCTTTAAGATTCCTCCCCTGTATTTATTGTGCAAA---AAT
GGATACTGGTTTTTGATAGTAATAGTAAGTTTATGCTCTGTCGTAGTCCATATGGCTGAGCTGCTAAAATAGGATATTAA
TATTTCAGTTGGCT-GGCTGCTAAAATAGGATATTACTATTAATAGTACCGTTGAGCATTACCTGCGCTTGAATCTATGT
TTGTCAGTTTGTGGCAGAATCATCTTCAGGCGCTCAGTGAATTCTCTGCTGTGTCCTTGCTAAGTCGCTAGTGTATAGAA
ACATTGTTTCTTGTATGAGAATTATCATCATATATGACTCTTAGGTTTGTTTTCTCTGAATTTTAAATAAAGAAACAATA
AACCTTGTGGTGTTATTGCTACTTCTTCCCTTTCTCAAACTTACAAACATTTTGGAAATATTGAAGTTCAGCTTAAGATT
CTCTATAGAATTACCATGATTTTGGAGCACCTATGCGCCATTAGTCGTTGCACATTGCAATATAACTAATACTCATGGAC
TAAAGAAATAGAACTACAATGTGGTTTCTGTGTATGGTACATTTGTGTCTTTTCGTTTTTGCTTTGAACTTGAGCTGTTA
ACCATAGGCTGAAAACATGCAAATCTAGAGGGCATCCTTACTCTGTTGTGAATCCTTAACGGGCAGCAGAGGTTAAACAA
CTAGTTGTGTTTTCTTGCCTTGCATTGTCACTCCATAAGTTTTCACAGAGCATCTTGCAACATTTTTTAACTGTCATATT
CTATTTCTACTCCTTAAACACTGCCAAATTTA---TCTGTCTTGTATTATATTGTGACTAAGGTGTCATTTGTGAGCACA
TGTTATGTAATTTCATGATCTGCCAATCTTGCTGTTGTATTCACTTTGTTTCTCTATTCTGCAGCTGCTGATGTGTTTAT
GTGGAGGAACAAGCACGTCTCTGCTGGAGTACTAGGTGGTGCAACTGCAATCTGGATCCTTTTTGAATTGCTTGGCTACC
ATCTTCTGGCTTTCCTTGGCCATGCTCTCATATTCTCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCCTCATCATTCATT
AACAAGTAAGCTATCTTCATCTCAGTATCACAGATTACATGTGCATACGCTTGCACGTTCAAGAGTTAGTCCTTAAAAAT
GAGTTCTAAATTCTGCCACCCATTTCAGGTCTCCCCCAAGGATTCCCGAGGTGATCATTCCTGAAGATCTGGTTGTCAAC
ATTGCGCTATCTACACGTCATGAGATCAACAGAGCCTTTGCAAACCTTCGTCAGATTGCTCTTGGCCGCGACATAAAGAA
GTTCCTTATTGTATGTCTGTTCTGCCATTGTTTACCAAGCGTTGTTCTTACATCAGTCTGGATTTGCCTCATTTAACTTA
TTTTTACAAAATTGTAGGTGATTGCTGGTCTATGGCTGCTTTCCATTCTCGGCAGTTGCTGCAACTTCTTGACGCTGTTC
TACATTGGTAAGGGATCTCAACTTTGTATACCATTTTCAGCAACTCTTC---CCTATATGGATTTGGCTA--ACAGTGGA
TTTTTCTCTTCTATGTCAAACAGTTTTTGTGGTTCTGCACACAGTTCCAGTAATCTACGAGAAGTATGAAGATCAGATTG
ATACCTATGGTGAGAAGGGGTGGATTGAGGTTAAGAAACAGTATGCTGTGTTTGATGCCAAGGTTCTGAGCAAAGTGCCG
AGGGGCCCCTTGAAAGACAAGAAGAACTAGAAACGAGTGGTACCGTGTGGA------ATGGAATGATGGCGACTGGTTCG
TGGCTGCCCTTGTGGTATGAGCACCAAATTTCTCACCGGTTGTCTTGTGTTATGT--AAGGCTGTTTTCGATGTTTGCGA
CTTTGATGAGAGTAGCCCCGGGTAGCTTACCCTCCAACAGTAATGCAGAGGCAGCACTTGTTTTGCTGTACCGCTGTTTG
ATTTTTGATCTGTTAAGGTGTCGCATGGGTACGGTTTCTGGACGCTGATTTTGCTACTTGCATTGCTGCAGTTTGGAGTA
TTGATGATGTTT-ATCAACTCGTTGGGCTTTAGATGTCATG---TACTCGTTTCTATTGTACTACTGCTATCATTGTTGC
AAAACAACTTTTTGTGCTATTAAAGCCCAGCCTGCGTGTGTT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>chr3D_686
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGTGGATTTTGGTTTTCCTTGTGTGCTCGTGTACA
CGAAGCATTTT-CTTCAAACTCTAC--------CAGGGGACATGTTGGTCCGTGGCAAAAGCACCCCGCCGTCCACCCCG
AGTCCTCACCCCGCCCGCTCTCCACCGTCCAATCCAAATCCAACGTCCCCGATCTTCCGATCAGACCTAAACCCC-ATCG
CATCTATAAAACCCCACCACGCTAGAAATCCTCCTCCCCCGCATTCTCTTCCCCCTCAACTCCCACGCGCACCGGCACCA
CCCCTTTTCTTGCGG---AGCAGCGTGAGGGTTTCGGAAAGCTAAGCTATGGCGGAGCAGCCGCACGCCGAGGACGCGGG
CCACAAGCCGGAGACCCTGATGGAGAAGATCGCCGACAAGCTCCACGTCGGCGGCGGCGACCACTCCTCCTCGTCCTCCG
ACTCCGACAAGGAGGAGCACCCGCGCCCCTCGGCGCCGCCCGCTCCCGCCCCCGCCCCCG------------CCGCCTCC
GAGGTCACCACCGCCTCCTTCGCCGCCTCCGCCTCCGCGGCGGCGGCCGATGCCAAGAACAAGATGTTCCGCCTCTTCGG
CCGCGAGCAGCCCATCCACAAGGTCCTCGGCGGAGGCAAACGTATGGCCCCATTACCGATCTAACTGATGCTCGTTTTTT
AGTGCTTTTGCTTGAAACGCGTAGATCGGATCGGAGTGGGTGGATCTGGACGGGCTTGGACCTTGGGTTTCGTACTAGAT
CTGGTATAAGGCACTGATTGGGCAGTGCAGGTGAGGTTTAAGCCTTCCTTTTT--GGGCGGCTGGGTTTGTTCAGATCCA
CAGGGGCGGTGCGTCGCCAAAGCCAACGCTCCAGTAGCGACCTGATTTACGCTGGTGGTTTCGAATTTGGTCAGTGCAAG
CTGTCTCCATATGAGTTTTGCCGTGGTTGTGCGATCTGATCTTTAAGATTCCCCCCTTGTATTTATGGTGCTAA---AAT
GGACACT--------------------------------------GTCCATATGTCTGGGCTGCTAAAATAGGATTTTAA
TATTCCATATGGCTGGGCTTCTAAAATAGGATATTACTATTAATAGTACCATTGAGTATTACCCGCGCTTGAATGTATGT
TTGTCAGTTTGTGGCAGAATCATCCTCAGGCGCTCAGTGAATTCTCTGCTGTGTCCTTGCCAAGTCGCTAGTGTATAGAA
ACATTGTTTCTTGTATGAGAATTATCACCATATATGTCTCTTAGGTTTGTTTTCTCTGAATTTTAAATAAAGAAACAATA
AACCTTGTGGTGTTATTGCTATTTCCTCCCTTTCTCAAACTTACAGACATTTTGGAATTATTGAAGTTCAGCTTAAGATT
CTCTATAGAATTACCATGATTTTGGAGGACCTATGCGCCATTAGTCGTTACACATTGCAATATAACTAATACTCATGGAC
TAAAGAAATAGAACTACGATGTGGTTTCTGTGTATGGTACATTTGTGTCTTTT--TTTTTGCTTTGAACTTGAGCTGTTA
ACCATAGGCTGAAAACATGCAAATCTAGAGGGCATCCTTACTCTGTTGTGAATCCTTAACGGGTAGCAGAGGTTAAACAA
CTAGTTGTGTTTTTTTGCCTTCCATTGTCACTCCATAAATTTTCGCAGACCATCCTGCAACATTTTTGAACTGTTATATT
CTGTTTCTACTCCTTAAGCACTGCCAAATTTTATCTCCGTCTTGTATTATATCGTGACTAAGATGTCATTTGTGAGCACA
TGTTATGTAATTTCACGATCTGCCAATCTTGCTGTTGTATTCACTTTGTTTCTCTATTCTGCAGCTGCTGATGTGTTTAT
GTGGAGGAACAAGCACATCTCTGCTGGAGTACTAGGTGGTGCAACTGCAATCTGGATCCTTTTTGAATTGCTTGGCTACC
ATCTTCTGGCTTTCCTTGGCCATGCTCTCATATTCTCTCTGGGTGTTCTCTTTCTCTGGTCTAATGCCTCATCATTCATT
AACAAGTAAGCTATCTTCATCCCAGTATCACAGATTACATGTGCGTACCCTTGCACGTTCAAGAGCTAGTATTTAAAAAT
GAGTTCTAAATTCTGCAA-CCATTTCAGGTCTCCCCCAAAGATTCCCGAGGTGATCATTCCTGAAGATCTGGTTGTCAAC
ATTGCGCTATCTACGCGTCATGAGATCAACAGAGCCTTCGCAAACCTTCGTCAGATTGCTCTTGGCCGCGACATAAAGAA
GTTCCTTATTGTATGTCTGTTCTGCCATTGTTTACCAAGCGTTGTTCCTACATCAATCTGGATTTGTCTCGTTTAACTTA
TTTTTACAAAACTGTAGGTGATTGCTGGTCTATGGCTGCTTTCCATTCTCGGCAGTTGCTGCAACTTCTTGACGCTGTTC
TACATTGGTAAGGGATCTCAACTGAGCATACCATTTTTAGCACCTCTTCTTCCCAATATGGATTTGGCTA--ACAGTGGA
TCTTTCTCTTCTATGTCAAACAGTTTTTGTGGTTCTGCACACAGTTCCCGTAATCTATGAGAAGTATGAAGATCAGATTG
ATACCTATGGTGAGAAGGGGTGGATTGAGGTTAAGAAACAGTATGCTGTGTTTGATGCCAAGGTTCTGAGCAAAGTGCCG
AGGGGCCCCTTGAAAGACAAGAAGAACTAGAAACGAGTGATACCGTGTGCCATCGGTATGGAATGATGGCGACTGGTTCG
TGGCTGCCCTTGTGGTATGAGCACCAAATTTCTCACCAGTTGTCTTGTGTTATGTGTAAGACTGTTTTCGTTGTTTGCGA
CTTTGATGAGAGTAGCC-TGGGTAGCTTACCCTCCAACAGTAATGCAGAGGCAGCACTTGTTTCGCTGTACCGCTGTTTG
ATTTTTGATCTGTTAAGGTGTCGCATGGGTACGGTTTCTAGACGCTGATTTTGCTGCTTGCATTGCTGCAGTTTGGAGTA
TTGATGATGTTTTATCAACTCGTTGGGCTTTAGATGTCATGCACTACTCGTTTCTATTGTACCACT---ATCACTGTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>SNPs
-SSSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S---SS-S-----------
----------SS-------------SSSSSSSS-----------------------------------------S-----
-S---S-S-----S------S-----------------S---------------S--------------------S---S
--------------------------SSS---------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S--------------S-------------------------SSSSSSSSSSSS--------
---------------------------------S----------------------------------------------
-----------------------------------------------------------------S--------------
-----------------------------------S--------------------------------------------
-----------------------------------------------------SS-------------------------
---------S-------------------S----S------------------S------------------------S-
-------------------------S-----------------S----------------S-------------SSS---
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------SS------------------------------------S--
--S---------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S--------------S-------------
------------------------------------------------S----------S-------------------S
------------------------------------------------------------SS------------------
-----------------------------------S---------------------S----------------------
--S--------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------S-----
-------------------S------------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------------------------------------------------------S------------SS
-------------------------------------------------S--S---------------------------
---------S-----------------------------------------------S---------S-SSS--------
---------------------------------------------S----------------------------------
----------S------------------------------------------------------S--------------
---------------------------------S-----------------------------------S----------
----------------S----------------------------------------------------S----------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-------------S--------------------------S---------------------------------------
--S---------------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_481
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TGCAAGGCATCTCGTCCAA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_2300
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TGGGTAGCAGAGGTTAAACAC
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_670
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CCACATTTCACGAGACCCCA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>reverse_2552
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGTGTTTAT
GTGGAGGAACAAGC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_855
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAACCAACGTCCCCGATCC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------
>reverse_2696
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATGGTCTAATGCCTCATCATTCA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
>forward_2289
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AGGGCATCCTTACTCTGTTGC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------
>reverse_3829
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATATGTCAGGAC
TGCAGCGG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------
