>input_sequence_34307
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----GCCGATACCCTGCCGCCGCCGCCGCCGCCGCCTTGTTCGGAGAAATGGGGAAAAAAGCCATCCGATACGCCGTGGT
CAGTACT-----------ACTATCTTCCCC--TCTCCTGTTCTTCACTCGCAAATCTGTCCGGAAGGAG-----AAGTGA
CGCTGGCGCGGCCGTCATCGTCTGTCTCGTCGCAGGTGGATGCCTTCGCGGCTGAGCCGTTCAAGGGCAACCCCGCCGCA
GTATGCCTCCTCGAAGAGGAGGGCGCCTCCGCGGCCGTGGACGACCGGTGGATGCAGTCCGTCGCCGCCGAGTTCAACCT
CTCGGAGACCGCCTTCCTCGCCCGGGACTCCTCCGGGGGAGCCGGCGCAGCCCCGCGGTTCCACCTCCGATGGTTCACTC
CCGTCACCGAGGTATCC---TGGCTCCCCATCCATCTCGTCCACAAATCCCAGAGCCCCCTC-TTACGACCAGTATCGAC
CTGAACTTCTGAACATGTTGATTTGCACAGTTACCTACCTTGACTCATCATTTCATTGT----TTTCAGGTTGACCTCTG
CGGCCACGCGACGTTGGCCTCTGCGCACTTCCTCTTCACGACTGTTCTTCCGGAGCATGGCAAGCTGGAGTTCATGACCA
GGTCCGGGATCCTGACTGCCAAGAAAGTCCCCGCACCAGGGAGCACTGGCGTCCCTGGTGAGGAGCAGGGGAAGCTGTTT
ATTGAGCTGGATTTCCCCATGATTGGTTTTCTGGAATGCAACGAAACGCCGTCGATTCTGGAGACCCTAAACGGTGCACC
CATTGTCAGCGTTCACAAATCGGCTACCGACGGCGACCTCATTGTACTGTCTCTCCCCATA--TTTTTGT-------TTC
CATAGTTACATTTGAGGATCAACTTCCTCATTTTATAATGGAGCATGCTGGTGCGAATGTATG-----------------
------------------------------------------------GTCTTTCAGAAACATTAATTGTCAATAAAAAT
CTTGCATGATTTTCAGGTGGAACTTTCTTCAGGAAAAGAAGTTGTTAATATCCTTCCTAGCATCGATGAAATTAAAAACT
TGGCCTGCAGGGGTCTTATTTTTACAGGACCGGCGCCGGCTGGATCTGGTTATGACTTCTTTACACGTTTCTTCTGCCCA
AAATTTGGGATAGATGAGGTGATGTCCTTTGTTAGTCCAAAGCA---TATAGAAACGGCAAAACTTATTTAACTTACCAC
ATCATCGACCATTTTTTGTACTTCAATATGTACTTAGCTAACTAAAAATGAG----TGCATGATTGCCTCTCCCAAGTTG
CGGTACCTAATTATGCTCATGTGTAATGTT------TACATCTTTCAGTCTGGTTACCATAGTCATGTAGTCTATTGAGT
TGTCTACTTCCAGCTTGTTCTGAGCCTTCCTTGTCTCG-------ATTTCGTAAT-------------------------
--------------------------------------------------------TAGTAGTGTTAACTAGGCAGTT--
----TTTACCTTGCAGTTGTTACAGATAATTTCACCAAGGAATTGGAATGTCTTGT------------------------
-------------------------------------------------------------------------ATTACAT
AGGAGTAGTTGAACACTAAGTATATACTCCCTCCGTCCCAAAATAAGTGTTGCTGATTTAGTACAACAT-----------
------------------------------------------AAGAAAAAACTCATTCATTCAACATTTACCATTGGGCG
TATATTGGCATTCGATATTCTCCATGTAATACATCTTCCTGTTCCAT--AACTCATACCCTTTGATCACTATATTTCGAC
AGGACCCTGTTACTGGCGGTACACATTGTGTTTTGGCACCCTATTGGGGTAGAAAGCTGGGGAAGCAAAAAATGACGGCA
TTTCAAGTATGTGCTTAGCTGTGTTTTCAGCAATTTAATTGATATAAACTAAAAAAATATTTTATTTA--AAAAATGGTG
CTGCAACATGCACTCGATCAGCTGAACCATGATGTTGG---CTTTCCTTCAT------------ATGTATCATCAGGCAT
CTCCAAGGGGTGGAACACTATACCTGCAACTGGATGACGCAAATCAGAGAGTGCAGATCCAGGGAGAAGCTCTTACTGTG
ATGGATGGAACGCTCCTAGCCTAGCCAGCATGCCTTTAGCAATTTGGCATCCATCTACTCGTATATGCCTTGAAGGACAA
CCATTCATCCATCTACTCGTATATTCGTGGAGTTATAATATGACTTTGGATGGTGGTGATTCTGTTTGTTGTTATATGCT
-TGTTGAACAGTTAACTGCTTATGGGTACAAAAAATA-----AAAAACATCCTGAGCTCTTCTAGAGACCTGAACAATGT
CCGGCAATTGCGGATACCGATGGGGGCTTGTCTGAGGGGAAGTGATTTCATTGTATTTCCGTGCCACAAATGCCATGTAT
TGGGCTTGACGAGATGACATCCAACTTGCCGAAGGCACTATATGGTGTTTGTTGC-------------------------
--ATAATGAGGAGTATGGACTGTATGGT----------------------------------------------------
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>chr3A_1_TraesCS3A01G182800
TTTTGTTTCAGGGGTTTTCTATTGTGGTGAGCCTGTTCTTGTGCCACAGTTGCGGCAGTTGTCGGCAGATTTCACCCACA
AGACAAACACAAAGTTTGAGTTTCACAAGGAGAACTTCTAGTACTGTAACTTGTATAAGAACATGTCTATGCCATGCTTC
ATCAGGTGAATTATATGGGTTGTATTATTATTATTATTTTGTAAAGGCAGGGAAATAAAATGGGAG--GTTTTGCCTAGT
CTTGTGTTCAGTCTTGTTTACTCTATGTTGTTAAGGAGTATA--------AGGTTTAGGAATCCTATTAGACCATGTTTC
CTTTCCTTGTACCCAAGTCTTGTGTAAGATATATGCTCCTTGGACTTTGC------------------------------
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-----------------------------------------------------------------------------AAT
ACAATCAAGTTGCATCCATAACATGGTATTAGAGTCTAGGTCTACTTTT-------AGCATGCACAACTTGTGCTTGATC
CTCTACTCACGCGGTCGTTGTCTCTTTGCCGCCTCTTGGGCCTTGCAATACAATCGAGTTGCATCCATAACATATGTAAC
CTACGTTATTTTTGCAAGTTGATGCTAATAGGGTTGATTTGCATAAATGAAGTTTTTTTTAACTGGTTCAACCCCTTTAT
GGTGCTTTGCATGACGGAAAAACATCAAACCAGTTCCAACAGATAGTCTTTGGTTAGATCATTTTATCCAAAGAATTTTT
GAAAATCTTCCATTCATTCCCTCTGGTTGATATTTGCAGTTACAGCCATCAAACACAAATAACACATGATCCGCGGGGAG
GATATATGCGTCCCTCCCTGGTCTTGGGATTTCCAACACCAAAAAAAAACAACCTAGCCCTCTTAACCAAATAGATTTGG
AAATCTCTCAAAATGACACCAGTCTCTGGGCCCAACTCCTTAAGAAAAAAAATACTTGCCAACTTCTTCATTCTTCACTT
CTAAGAAGCGGGGCTCCCAAATCTGGACTGGGATTCAGAATTGCATTTTTAATGTGGGAGTTCATTTCTCGGTTTGTAAT
GGGGGCCGATACCCTGCCGCCGCCGCCGCCGCCGCCTTGTTCGGAGAAATGGGGAAAAAAGCCATCCGATACGCCGTGGT
CAGTACT-----------ACTATCTTCCCC--TCTCCTGTTCTTCACTCGCAAATCTGTCCGGAAGGAG-----AAGTGA
CGCTGGCGCGGCCGTCATCGTCTGTCTCGTCGCAGGTGGATGCCTTCGCGGCTGAGCCGTTCAAGGGCAACCCCGCCGCA
GTATGCCTCCTCGAAGAGGAGGGCGCCTCCGCGGCCGTGGACGACCGGTGGATGCAGTCCGTCGCCGCCGAGTTCAACCT
CTCGGAGACCGCCTTCCTCGCCCGGGACTCCTCCGGGGGAGCCGGCGCAGCCCCGCGGTTCCACCTCCGATGGTTCACTC
CCGTCACCGAGGTATCC---TGGCTCCCCATCCATCTCGTCCACAAATCCCAGAGCCCCCTC-TTACGACCAGTATCGAC
CTGAACTTCTGAACATGTTGATTTGCACAGTTACCTACCTTGACTCATCATTTCATTGT----TTTCAGGTTGACCTCTG
CGGCCACGCGACGTTGGCCTCTGCGCACTTCCTCTTCACGACTGTTCTTCCGGAGCATGGCAAGCTGGAGTTCATGACCA
GGTCCGGGATCCTGACTGCCAAGAAAGTCCCCGCACCAGGGAGCACTGGCGTCCCTGGTGAGGAGCAGGGGAAGCTGTTT
ATTGAGCTGGATTTCCCCATGATTGGTTTTCTGGAATGCAACGAAACGCCGTCGATTCTGGAGACCCTAAACGGTGCACC
CATTGTCAGCGTTCACAAATCGGCTACCGACGGCGACCTCATTGTACTGTCTCTCCCCATA--TTTTTGT-------TTC
CATAGTTACATTTGAGGATCAACTTCCTCATTTTATAATGGAGCATGCTGGTGCGAATGTATG-----------------
------------------------------------------------GTCTTTCAGAAACATTAATTGTCAATAAAAAT
CTTGCATGATTTTCAGGTGGAACTTTCTTCAGGAAAAGAAGTTGTTAATATCCTTCCTAGCATCGATGAAATTAAAAACT
TGGCCTGCAGGGGTCTTATTTTTACAGGACCGGCGCCGGCTGGATCTGGTTATGACTTCTTTACACGTTTCTTCTGCCCA
AAATTTGGGATAGATGAGGTGATGTCCTTTGTTAGTCCAAAGCA---TATAGAAACGGCAAAACTTATTTAACTTACCAC
ATCATCGACCATTTTTTGTACTTCAATATGTACTTAGCTAACTAAAAATGAG----TGCATGATTGCCTCTCCCAAGTTG
CGGTACCTAATTATGCTCATGTGTAATGTT------TACATCTTTCAGTCTGGTTACCATAGTCATGTAGTCTATTGAGT
TGTCTACTTCCAGCTTGTTCTGAGCCTTCCTTGTCTCG-------ATTTCGTAAT-------------------------
--------------------------------------------------------TAGTAGTGTTAACTAGGCAGTT--
----TTTACCTTGCAGTTGTTACAGATAATTTCACCAAGGAATTGGAATGTCTTGT------------------------
-------------------------------------------------------------------------ATTACAT
AGGAGTAGTTGAACACTAAGTATATACTCCCTCCGTCCCAAAATAAGTGTTGCTGATTTAGTACAACAT-----------
------------------------------------------AAGAAAAAACTCATTCATTCAACATTTACCATTGGGCG
TATATTGGCATTCGATATTCTCCATGTAATACATCTTCCTGTTCCAT--AACTCATACCCTTTGATCACTATATTTCGAC
AGGACCCTGTTACTGGCGGTACACATTGTGTTTTGGCACCCTATTGGGGTAGAAAGCTGGGGAAGCAAAAAATGACGGCA
TTTCAAGTATGTGCTTAGCTGTGTTTTCAGCAATTTAATTGATATAAACTAAAAAAATATTTTATTTA--AAAAATGGTG
CTGCAACATGCACTCGATCAGCTGAACCATGATGTTGG---CTTTCCTTCAT------------ATGTATCATCAGGCAT
CTCCAAGGGGTGGAACACTATACCTGCAACTGGATGACGCAAATCAGAGAGTGCAGATCCAGGGAGAAGCTCTTACTGTG
ATGGATGGAACGCTCCTAGCCTAGCCAGCATGCCTTTAGCAATTTGGCATCCATCTACTCGTATATGCCTTGAAGGACAA
CCATTCATCCATCTACTCGTATATTCGTGGAGTTATAATATGACTTTGGATGGTGGTGATTCTGTTTGTTGTTATATGCT
-TGTTGAACAGTTAACTGCTTATGGGTACAAAAAATA-----AAAAACATCCTGAGCTCTTCTAGAGACCTGAACAATGT
CCGGCAATTGCGGATACCGATGGGGGCTTGTCTGAGGGGAAGTGATTTCATTGTATTTCCGTGCCACAAATGCCATGTAT
TGGGCTTGACGAGATGACATCCAACTTGCCGAAGGCACTATATGGTGTTTGTTGC-------------------------
--ATAATGAGGAGTATGGACTGTATGGTGTTTGTTGCATAATGAGGACCGAACCTGGGAAATAATCCGTGCCTCGTGACC
ATCTGGTACGTGAGGTTATGTCTCACTACCAAAC--AAATCTACGTGCAGTTATAGTTTTGATTTTATGTATTT------
-------------------------------------------TACAAAACACGG-------------------------
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-TTGACATTTTTCAACCAAGTGTCTTATTTATGAACTAATTGCACA-TTTGTCACGAGACATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACGGTAGCCGCCGCTACTACAAGGAAGCT
AGGCCCCGATACCATAGCCAGGGGCAATGGTGCTACAAGGTTGGCAACAGGGGCCACCATGCGTGTTGCACTCCAACGGG
GGTGGGGTGCTGCATGGTGGCACTTCGTGCTAAAAA-GGCACATGTCGCAATGCTGCAAGAGGAGCGTTGCAACATCGAC
CGCACACAGTTGTAAGGAGTTGTGAGAAGTGCTTCGATGGCGACCGTGGTATGCTATGAAGATGCCAATGACTAAAGTGA
AGGAGGAGGGTGATGTGTGTTGTGATGGGCAGTGGATGCTACGACAGGGAGATGCCCGATGATGTCTGTTACAATAGGGC
CTCCAGGGGTGCTGCAAGAGCAGAGCAGGGATGAGGGTTCACAACATCACCCACTGCTCGCAGCATC
>chr3D_1
TTTTGTTTCAGGGGTTTTCTATTGTGGTGAGCCTGTTCTTGTGCCGCAGCTGCGGCAGTTGTCGGCAGATTTCACCCACA
AGACAAACACAAAGTTTGAGTTTCACAAGGAGAACTTCTAGTGGTGTAACTTGTATAAGAACATGTCTATGCCATGCTTC
ATCAGGTGAATTATATGGGTTGTATTATTATTATT---TTGTAAAGGTAGGGAAATAAAATGGGAGTGGTTTTGCCTAGT
CCTGTGCTCAGTCTTGTTTACTCTACGTTGTTAAGGAGTATATTAGTATTAGGTTTAGGAATCCTATTAGGTTACGTTTC
CTTTCCTTGTGCCCAAGTCTTGTGTAAGATATATGCCCCTTGGACCTTTGTTATGTGGCTGCTAGAAGGACCTTTGTTAT
GTGGCTGCTAGAAGGAGGGCACGAGAGGGCCGGGCGGGGGGCCTTTTGCCCATGGCCGGTCAAGAGGAAAGGGATTTCCT
TCTTAATTCTTGCTTGATTAGATTGACACATCTCCTTCCCTTATATAGAGAGGTTTACTTGACTTCTAAGCAAGACTTAC
TTGACCTCTAAGCAAGCGACCCTGCGGACGACATGGAGGTTTTTTGCGCAGCGAAGTGCAACTTGGAGGAGCGGCAGCTG
CAGACCACGCATCTCCCGCACACGCCGACGCGCTAGGAGGCCGCACGTAGCAGCATGTAGCCTCATCGCCGTCGACACGT
GGCAGGTAGCGATCCAAGCCGGAAGCGGTGACGGCGACGACGAAAACTTGATCTGCTGGATGGGGACGCCTTGAGACAGT
GGCGGTGCTTATGGGAACTAGGTCGTCGCAGTCCTGTCGTAGGGCATCCCATACTAGTACGAGATGACCGGCGCCGTGGT
CGCGTCCGAGGGCGGCGGCAGCGTGGGTAGCTTCTGTTGGTGTGGCGGCGGAGGAGGTGGCTGCTGGGGATGCGGCTGGG
GCGCATAGGGCCCGATGAGGAAGGCCCTGATGCCCGCCACAGCCTGCCGTAACTACAAGATTGCGGCTATCATCTGCTCC
GGGCTGAGGACGAGGGCAGGCAGCGTCGGGGCAGAGGGTGCAATCGCCCCTGAGGACGCCAGCACGTCCAATGCCGGCGC
GCCTGCTGTGTGGGGCAGCAACGCCGATGAAGACGCTGGTGGCGGCGGGTAGGTGTGCGGCGGCGGCGGATGGGAAGAAC
TTGATGGAGGGCTGGACATGATCGAATCCGGAAAAGCTGATACCAGATTGTTATGTGGCTATTAGGAGGGCGCGAGAGGG
CCGGCCGGGGGGCCTTTTGCCCACGGCCAGGCAAGAGGGAAGGGATTTCCTTCTTAATTCTTGCTTGATTAGATTGATAC
ATCTCCTCTTCTTATATAGAGAGGTTTACTTGACTCCTAAGCAAAGCTTAGTTGACCCTTAAGCAAATGACCCTTATCTC
TAATTAATTTTAAGATTAACAGGCTATACCGCCAATCCAGACCCATTAGGCCCATTACATACTCTACACAACCTTGTAAT
ACAATCAAGTTGCATCCATAACATGGTACTAGAGTCCGGGTCTTCTTTTAGCATGCAGCATGCACAACTTGTGCTTGATC
CTCTGCTCACGCCGT-----------------------------------------------------------------
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-----------------------CGTTGTCTCTTTGCCGCCTCTTGGGCC------------------------------
--------------------------------------TTGCAATACAATCAAATTGTATCCATAA--------------
-------------------------------------------------TAT------------ATGTAACCTATGTTTA
TTTTTGCAAGGTGATGCTAAGT----------------------------------------------------------
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-------------------------------------------------------GGGTTGATTTATGTGGATGTAGTTT
GTTTTAACTGGTTAAACCCCTTTCTGGCGGTTAGCATGACGGAAAAACATCAAACCAGTTCCAACATATTGTACTTCG--
-----------------------------------------GTTAGTTCATTTTATCCAAAGAATTTTTGAAAATCTTCC
ATTCATCCCCTCTGGTTGATATATGCCGTTACAGCCATCAAACACAAATAACACATGATCCGCGGGGAGG--AT------
-------------------------------------------------------------ATATGCGTCCCTCCTGGTC
TT-----------GGG-ATTTCCAACACCAAAAAGAAAATGAACCTAGACCACTTAACCAAATGGATTTGGAAGATCTCT
CAAAATGACGCCAGTCTCTGGGCCTAACTC---AAGAAAAAAAAATACTTGCCAACTTCTTCATTCTTCACTTCTAAGAA
GTGGGGCTCCCAAATCTGGAATGGGATTCAGAAGTGCAAGTAGATTTTTG------------------------------
--------------------------ATGTGGGAGCTCATTTCTCGGTTTGTAATG------------------------
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----------------------------------------------------------------------------GGGG
TCAATACC-----------------------------------------------------------
>chr3B_333
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----------------------TGTAAGATATATGCCCCTTAGACCTTGC------------------------------
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-----------------------------------------------------------------------------AAT
AAAGTCAAGTTGCATCCATAACATGGTCTTAGAGTCTAGGTCTTCTTTTAG-----------------------------
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----------------------CATGCATAACTTGTGCTTGATCCTC--TACTCATGCGGTTG-----------------
-------------------------TTGTCTCTTTGCCGCCTCTTGGGCC------------------------------
--------------------------------------TTGCAATACAATCAAATTGCATCCATAA--------------
-------------------------------------------------CAT------------ATGTATCCTATGTTTA
TTTTTGCGAGTTGATGCTAATA----------------------------------------------------------
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-------------------------------------------------------GGGTTGATTTGTGTAGATGTATTTT
-TTTAAAATGGTTAAACCCCTTTCTGGTGCTTAGCATGATAGAAAAACATCAAACCAGTTCCAACAGATTGTCTTT----
----------------------------------------AGTTAGTTCATTTTATCCAAAGAATTTTTGAAAATCCCCC
ATT-----CCTATGGTTGATATTTGCCGTTACAGCTATCAAATACAAATAATACATGATCCGCGGAGGATATAT------
-------------------------------------------------------------ATATCCATCCCTCCTGGTC
TT-----------GGGGATTTCCAACACCCAAAA--AAATGAACCTAGACCTCTTAACCAAATGGATTTGGAAGATCTCT
CAAAATGACACCAGTCTCTAGGTCCAAATCCTTAAGAAAAAAGTACTCCCTCTGTAAAGAAATATAAAAGCGTTTAGAT-
------CTCCCAAATTGGGAATGGGATTCAGAAGTGTAAGTAGATTTTTA------------------------------
--------------------------ATGTGGGAGCTCATTTCTTGGTTTGTACTG------------------------
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----------------------------------------------------------------------------GGGG
GTCGATA------------------------------------------------------------
>chr3B_1012
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---------------GCCGCCGCCGCCGCCGCCGCCTGGTTCGGAGAAATGGGCAAAAGAGCCATCCGATACGCCGTGGT
CAGTACT-----------ACTATCTTCCCCTCTCTCCTCTTCTTCACTCGCACATCTGTCCGGAAGGAG-----AAGTGA
CGCTGGCGCGGCCGTCATC----GTCTCGTCGCAGGTGGATGCCTTCGCGGCTGAGCCCTTCAAGGGCAACCCCGCCGCA
GTATGCCTCCTCGAAGAGGAGGGCGCCTCCGCGGCCATGGACGACCGGTGGATGCAGTCCGTCGCCGCCGAGTTCAACCT
CTCGGAGACCGCCTTCCTCGCCCGGGACTCCTCCGGGGGAGCCGGCGCAGCCCCGCGGTTCCACCTCCGATGGTTCACTC
CCGTCACGGAGGTATCC---TAGCTCCCCATCCATCCCGTCCACAAATCCCACAGCCCCCCTTTTACTACCAGTATCGAC
CTGAACCTCTGAACTTGTCGATTTGCAGAGTTACCTACCTTGACTCATCATTTCATTGT----TTTCAGGTTGACCTCTG
CGGGCACGCGACGTTGGCCTCTGCGCACTTCCTCTTCACGACTGTTCTTCCGGAGCATGGCAAGCTGGAGTTCATGACCA
GGTCCGGGATCCTAACTGCCAAGAAAGTCCCTGCACCAGGGAGCACTGGCGTCCCAGGTGAGGAGCAGGGGAAGCTGTTT
ATTGAGCTGGATTTCCCCATGATTGGTTTTCTGGACTGCAACCAAATGCCGTCGATTCCAGAGACCCTAAACGGTGCGCC
CATTGTCAGCGTTCACAAATCGGCTACCGACGGCGACCTCATTGTACTGTCTCTCTCCCCATGTTTTTGT-------TTC
CATAG---------------------------------TGGAGCATGCTGGTGCGAATGTATG-----------------
------------------------------------------------GTCTTTCAGAAACATTAATTGTCAATAAAAAT
CTTGCATGATTTTCAGGTGGAACTTTCTTCAGGAAAAGAAGTTGTTAATATCCTTCCTAGCATCGATGAAATTAAAAACT
TGGCCTGCAGGGGTCTTATTGTTACAGGACCGGCGCCGGCTGGATCTGGTTATGACTTCTTTACACGTTTCTTCTGCCCA
AAATTTGGGATAGATGAGGTGATGTCCTTTGTTAGTCCAAAGCA---TATAGAAACGGCTAAACTTGTTTAACTTACCAC
GTCATCCACCATTTTTTGTACTTCAATATGTACTTAGCTACATAAAAATAAG----TGCATGATTGCCTCTCCCAAGTTG
CAGTACCT-ATTATGCTCATGCGTAATGTT------TACATCTTTCAGTCTGGATACCATAGTCATGTAGTCTATTGAGT
TGTCTACTTCCAGCTTGTTCTGAGCCTTCCTTGTCTCGATTTGCAATTTCGTAAT-------------------------
--------------------------------------------------------TAGTAGTGTTAACTAGGCAGTTAT
AGTTTTTACCTTGCAATTGTGACAGATAATTTCACCAAGGAATTGGAATGTCTTGTACTCCCTCCGTCTCAAAATAAGTG
TCTCAAC--TTTGTACTAGCTCTAGTACAAATTTGTACTAAGCTTGAGACAGTTATTTTGGGATGGAGAGAGTATTACAT
AGGAGTAGTTGAACACTAAGTATATACTCCCTCCGTCCCAAACTAAGTTTTGCTGATTTAGTACAACATTGTACTAACTT
TGTACTAAATCAGCAACACTTATTTTGGGACGGAGGGAGTATAAGACAAAACTCGTTCATTCAACATTTATCATTGGGCG
TATATTGGCTATCGATATTCTCCATGTAATACATCTTCCTGTTCCAT--AACTCATACCCTTTGATCACTATATTTTGAC
AGGACCCTGTTACGGGCAGTATACATTGTGTTTTGGCACCCTATTGGGGCAGAAAGCTGGGGAAGCAAAAATTGACGGCA
TTTCAAGTATGTGCTTAGCTGTGTTTTCAGCAATTTAATTGTTATAGACTCAAAAAATATTTTATTTA--AAAAATGGTG
CTGCAACATGCACTCGATCAGCTGAACCATGATGGTGG---TTTTCCTTCAT------------ATGTATCATCAGGCGT
CTCCAAGGGGTGGAACACTATACCTGCAACTGGATGACGCAAATCAGAGAGTGCAAATCCAGGGAGAAGCTCTTACTGTG
ATGGATGGGACGCTCCTAGCCTAGCCAGCCA----TTGGCAATTTGGCATCCATCTACTCGTATATGCTTTGAAGGACTA
CCATTCATCCATCTACTCGTATATTTACGGAGTTATAATATGACTTTGGATGTTTGTGATTATATTTGCTGTTATATGCT
-TGTTGAACAGTTAACTGTTTATGGATATAAAAAAT--------------------------------------------
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>chr3B_1012
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---------------GCCGACGCCGACGCCGACGCCGTGTTGGTGGAAATGGGCAAGAAAGCCATCCGATACGCCGTGGT
CAGTACTGTACTGTACTTACTATCTTCCCC--TCTCTTCTTCTTCACTCGCACGGTCGCA-----CCTGTCGGAAAGTGA
CGTTGGCCGGGCCGTCGTG----GT-------CAGGTGGATGCCTTCGCGACCGAGCCGTTCAAGGGCAACCCCGCCGCG
GTGTGCCTCCTCCACGACGACAAC---------GCCGCGGACGAGCGGTGGATGCAGTCCGTCGCCACCGAGTTCAACCT
CTCGGAGACCGCCTTCCTCGTCCGCGACTTCTCCCGGCCCGCCAGCGCCGCCCCGCTCTTCCACCTCCGATGGTTCACTC
CCGTCACCGAGGTAACCACATAGCCCTCCGTCCATCTCCTCGCAAAATCCTCGGATCCCCTTTCTACTGCCAGCATCGAC
CGATCTGAAGAACCCGTC---------GACTGGCCTGCATTGACTCCCACCACGCGTCGTCGCTTTCAGGTCGACCTGTG
TGGGCACGCGACGTTGGCCTCCGCCCACTTCCTCTTCACGGCCGTTCTCCCGGAGCATGGCATGATCGAGTTCATGACCA
AGTCCGGTATCCTGACTGCGAAGAAAGTTCTTGCGCCAGGGGGCGCAGGCGAGGCC---------CACGGGAAGCTGTTT
ATTGAGCTGAATTTCCCCATGATTGATTTCCTGGACTGCAACGAGATGCCGTCGATTCCGGAGACCCTAAACGGCGCACC
AGTGGCCAGTGTTCACAAATCGGCGGCCGACGGTGATCTCATTGTACTGTCTCTCCCCTGT--TTTACCTG---------
CATCATTACATTCCAAAATAAACTTCCCCATTTTAAGATGGGGCATGTTGGTGC--------------------------
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>chr3D_1015
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------------------GCCGCCGACGCCGACGCCGCGTCCATGGAAATGGGCAAGAAAGCCATCCGATACGCCGTGGT
CAGTGCT-----------ACTATCCTCCCC--TCTCCTGTTC---ACTCGCACGGTCGCA-----CCTCTCGGAAAGTGA
CGTTGGCCCGGCCGTCGTG----GCCTCGTCGCAGGTGGACGCCTTCGCGACTGAGCCGTTCAAGGGCAACCCCGCCGCG
GTGTGCCTCCTCGAGGACGACAAC---------GCCGCGGACGAGCGGTGGATGCAGTCGGTTGCCACCGAGTTCAACCT
CTCGGAGACCGCCTTCCTCGTCCGCGACTTCTCCCGGCGCGCCAGCGCCGCGCCGCTCTTCCACCTCCGATGGTTCACTC
CCGTCACCGAGGTAACCACATAGCCCTCCGTCCACCTCCTCCCAAAATCTTCGGATCCCCTTTCTACTGCCATCATCGAC
CGATCTGAAGAACCCGTC---------GACTGGCCTGCATTGACCCCGAGCACGCGTCGTCGCTTTCAGGTCGACCTGTG
TGGGCACGCGACGTTGGCCTCCGCCCACTTCCTCTTCACGGCCGTTCTCCCGGAGCATGGCATGATCGAGTTCATGACCA
AGTCCGGTATCCTGACTGCGAAAAAAGTTCCCCCGCCAGGGGGCGCAGGCGAGGCC---------CACGGGAAGCTGTTT
ATTGAGCTGAATTTCCCCATGATTGATTTCCTGGGCTGCAACGAGATGCCGTCGATTCCGGAGACCCTAAACGGCGCACC
AGTGGTCAGTGTTCACAAATCGGCGGCCGACGGTGATCTCATTGTACTGTCTCTCCCCCTT--TTTTT------------
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>chr3D_1018
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---------------------GCCGCCGCCGCCGCCTTGTTCGGAGAAATGGGCAAAAAAGCCATCCGATACGCCGTGGT
CAGTACT-----------ACTATCTTCCCC--TCTCCTCTTCTTCACCCGCACATCTGTCCGGAAGGAG-----AAGTGA
CGCTGGCGCGGCCGTCATC----GTCTCGTCGCAGGTGGATGCCTTCGCGGCTGAGCCGTTCAAGGGCAACCCCGCCGCA
GTATGCCTCCTCGAAGAGGAGGGCGCCTCCGCGACCGTGGACGACCGGTGGATGCAGTCCGTCGCCGCCGAGTTCAACCT
CTCGGAGACCGCCTTCCTCGCCCGTGACTCCTCCGGGGCAGCCGGCGCAGCCCCGCGGTTCCACCTCCGATGGTTCACTC
CCGTCACCGAGGTATCGACCTGAATCTCTGAACTTGTCGTCCACAAATCCCACAGCCCCACTTTTACGACCAGTATCGAC
CTGAACTTCTGAACTTGTCGATTTGCACAGTTACCTACCTTGACTCATCATTTCATTGT----TTTCAGGTTGACCTCTG
CGGCCACGCGACGTTGGCCTCTGCGCACTTCCTCTTCACGACCGTTCTTCCGGAGCATGGCAAGCTGGAGTTCATGACCA
GGTCCGGGATCCTAACTGCCAAGAAAGTCCCTGCACCAGGGAGCACTGGCGTCCCAGGTGAGGAGCAGGGGAAGCTGTTT
ATTGAGCTGGATTTCCCCATGATTGGTTTTCTGGAATGCAACGAAATGCTGTCGATTCCGGAGACCCTAAATGGTGCTCC
CATTGTCAGCGTTCACAAATCGGCTACCGACGGTGACCTCATTGTACCGTCTCCCCCCTAT--TTTTGCTTGCATAGTTA
CATACTTACATTTGATGATCAACTTCTTTGTTTTATAATGGAGCATGCTGGTACGAATGTATGAGCTGAATAACTATTTC
TCTTTGCTCCGTTTTGTGATATATATTGCTCACTTAGGTGGGTCAGCTGTACTTCAGAAACATTAATTGTCAATAAAAAT
CTTGCATGACTTTCAGGTGGGACTTTCTTCAGGAAAAGAAGTTGTGGATATCCTTCCTAGCATCGATGAAATTAAAAACT
TGGCCTGCAGGGGTCTTATTGTTACAGGACCGGCACCTGCTGGATCTGGTTATGACTTCTTTACACGTTTCTTCTGCCCA
AAATTTGGGATAGATGAGGTGATGTCCTTTGTTAGTCCAAAGCA---TATAGAAACGGCGAAACTTGTTTAACTTACCAC
GTCATCGACCATTTTTTGTACTA--AATATG---TAGCTAACCAAAAATAAG----TGCATGATTGCCTCTCCCAAGTTG
CAGTACCTAATTATGCTCATGTGTAATGTT------TACATCTTTCAGTCTGGATACCATAGTCATGTAATCTTTTGAGT
TGTCTACTTCCAGCTTGTTCTGAGCCTTCCTTGTCTCG-----------CGTAAT-------------------------
--------------------------------------------------------TAGTAGTGTTAACAACTAGGC---
AGTTTTTACCTTGCAGTTGTGACAGATAATTTCACCAAGGATC--GAATGTCTTG-------------------------
------------------------------------------------------------------------TATTACAT
AGGAGTAGTTGAACACTAGGTATATACTCCCTTTGTCCCAAAATAACCTTATTTTTGGGAATG----------------T
TGTACTAAATCAGCGACACTTATTTTGGGACGGAGGGAGTATAAGACAAAACTCGTTCATTCAACATTTATCATTGGGCG
TATATTGGCTATCGATATTCTCCATGTAATACATCTTCCTGTTCCAT--AACTCATACCCTTTGATCACAATATTTTGAC
AGGACCCCGTTACTGGCAGTATACATTGTGTTTTGGCACCCTATTGGGGCAGAAAGCTGGGGAAGCAAAAATTGACGGCA
TTTCAAGTATGTGCTTAGCTATGTTTTCAGCAATTTAATTGATATAGACTCAAAAAATATTTTATTTA--AGAAATGGTG
CTGCAACATGCACTCGATCAGCTGAACCATGATGTTGG---TTTTCCTTCAT------------ATGTATCATCAGGCAT
CTCCAAGAGGTGGAACACTATACCTGCAACTGGATGACGCAAATCAGAGAGTGCAAATCCAGGGAGAAGCTCTTACTGTG
ATGGATGGAACGCTCCTAGCCTAGCCAGCATGCCTTTGGCAATTTGGCATCCATCTACTCGTATATGCTTTGAAGGACAA
CCATTCATCCATCTACTCGTATATTCATGGAGTTATAATATGAGTTTGGATGGTGGTGATTCTGTTCGTTGTTATATGCT
-TGTCGAACAGTTAACTGCTTATGGGTACAAAAAATA-----AAAAACATCCTGAGCTCTTTTAGAGACCTGAACAATGC
CCGGCAATTGCGGATACCGATGGGGGCTTGTCT-AGGGGAAGTGATTTCATTGTATTTCCGTGCCACAAATGCCATGTAT
TGGGCTTGACGAGTTGACATCCAACTTGCCGAAGGCACTATTGTTTTCCACCATTGTAATATCATCTTTGGTATAGTCCC
ATATAAGCAGGAGTATGGACTGTATGGTGTTTGTCGCATAATGAGGGGCCGAACCTCGGTAAAATCCGTGCCTCGTGACC
ATCTGGTACGTGAGGTCATGTCTCACTACCAAAC--AAATCTACGTGTAATTATAGTTTTGATTTTATGTATTT------
-------------------------------------------TACTCCCTCTGTCCCAAAATATAAGAACGTTTTTTAC
AC------------------------TACACTAGTGTAAAAACGTTCTTATATTATAGGACGAAGGGAGTACTAAACACG
TTTGACATTTTGCAACCGAGTGTCTTATTTATGAACTAATTGCGCCTTTTGTCACGAGACAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCCGCCGCTACTACAAGGGAGCT
AGGCCTCGATACCATAGCCAGGGGCAATGGTGGTGCAAGGTCGGCAACAGGGGCCACCATGCGTGCTGCACTTCAGCGGG
GGTGGGGTGCTCCATGGCGGCACTTCGTGCTACAAAAGGCACATCTCACAATGCTGCAAGAGGAGTGTTGCAACATCGGC
CACACACAGTTGTAAGGAGTTGTGAGAAGTGCTTCGATGGCGACCGAGGTCTGCTATGGAGATGCCAACGACTACAGTGA
AGGAGGAGAGCAATGTGTGATGTGATGGGCAGTGGATGCTACGACAGGGAGATGCCCGACGATGTCTGTTACAATAGGGG
GTCGAGGGGTGCTGCAAGAGCAGAGCAGGGATGAGGGTTCAGAACATCACCCATTGCTCGCAACATC
>chr3A_1021
--------------------------------------------------------------------------------
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------------------------GCCGCCGACGCCGTGTTCGTGAAAATGTGCAAGAAAGCCATCCGATACGCCGTGGT
CAGTACTGTACT-----TACCATCTTCCCC--TCTCCTCTTCTTCACTCGCACGGTCGCGTCGCGCCTCTCGGAAAGTGA
CGTCGGCCCGGCCGTCGTG----GTCTCGTCGCAGGTGGACGCCTTCGCGACCGAGCCGTTCAAGGGCAACCCCGCCGCG
GTGTGCCTCCTCGACGACGACAAC---------GCCGCGGACGAGCGGTGGATGCAGTCCGTCGCCACCGAGTTCAACCT
CTCCGAGACCGCCTTCCTCGTCCGCGACTTGTCCCGGCCCGCCAGCGCCGCGCCGCTCTTCCACCTTCGATGGTTCACCC
CCGTCACCGAGGTAACCACATAGCCCTCCGTCCATCTCCTCCCCAAATCCTCGGATCCCCTTTCTACTACCAGCATCGAC
CGATCTGAACAACCCGTC---------GACTGGCCTGCCTCGACCCCGAGCACGCGTCGTCGCTTTCAGGTCGACCTGTG
TGGGCACGCGACGTTGGCCTCCGCCCACTTCCTCTTCACGGCCGTTCTGCCGGAGCATGGCATGATCGAGTTCATGACCA
AATCCGGCATCCTGACTGCGAAGAAAGTTCCTGCGCCAGGGGGCGCAGGCGAGGCC---------CACGGGAAGCTGTTT
ATTGAGCTGAATTTCCCCATGATTGATTTCCTGGACTGCAACGAGATGCCGTCGATTCCAGAGACCCTAAACGGCGCACC
AGTGGTCAGTGTTCACAAATCGGCGGCCGACGGTGATCTCATTGTACTGTCTCTCCCCTGT--TTTACCTG---------
CATCATTACATTCCAAAATAAACTTCCCCATTTTAAGATGGG-CATGTTGGTGCTGCTATGATCATTCTCCTAAGCTAAA
CAGCTATACTGTATTCTCTTAGTTTCTCCTATC---------TCAGTTGTGCTTCTGAAAAATCAACTGCCCAATAAACA
GCTGG-TGGCTTTCAGGTGGAACTTTCTTCAGCAAAAGAGGTTGCCGACATCCTTCCTAACATCGAAGAAATTAAGAAGT
TGTCATGTGGTGGTATCATGGTTACAGGACCGGCACCTGCTGGATCTGGTTATAACTTCTTCACACGTTTATTCTGCCCG
AAATTTGGGATGGATGAGGTGATGTCCTTTCTTAGTCCAAAGTTGTGTATACAAATGGTGAAGCTTGTTTAACTTACCAA
GGTATCGAGCATTTGAGTAAAAAACAGTATG---GAGCTAAGTATAAGAAAGTCGATGCAGGAGTGCCTCTCCCAAC---
----ACCTAATTGTGCTCATGTCTCAAATATGTCACTACATCTTTCATTCTGGATAGCATAGTCCTGTAGT-------GT
TGTCTACTTCCAGCATGCTCTGAAGTCTGAACCCTGCTTGTCCTAGACAAATTAATATCATCATGAGTTACTTCTGTTTA
GCTAGAATTTTATCTATATTCACAATATCGATTAGCAGGCTAAGAGCTGCTTTGACTAGTAGTGTTATCTATGGTAGAAC
AAACTTTATCTCAGTGGATGCTTGTAATTATTGTTGAGGAATGAGGAATCGATGCCCTGCTTGCAAGTTGCAATTATAGA
GTGCCACCATTTGTACTAGTTGAAATCT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTATAGGAAAACCCTCGTTCATTTAAATTAATC--TTGGGCG
TCCATTGGCTATTGATATTGTGCATGTAATGCAGCCTCATCTTTCATACAAGTCGTAACCCCTGATTTCTGTATTTTTGC
AGGACCCTGTTACTGGCAGTATACATTGTGTATTGGGACCCTTTTGGGGTAGAAAGCTTGGGAAGCAAAAACTGACGGCA
TTTCAAGTATGC------------TTTCGACGTTTTAATTGTTTGGATGTAT----ATATTTTATTTTACAATAATAATG
CCACAACATGCGCTCAATCAGCGCTAAATCATCGTGTTAATTTTTCCTTCATGTGATCATTTCCATGTATCATCAGGCAT
CTCCAAGGGGTGGAACGCTATACCTGGAACTGGATGACGCAAATCGGCGAGTGAAAATCCAAGGAGAAACCGTTACTGTC
ATG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>SNPs
---------------------------------------------S---S------------------------------
------------------------------------------SS------------------------------------
-----------------------------------SSS---------S--------------------------------
-S----S------------------S--------------------------------------------SSS-S-----
----------S-------------------------S--------S----------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------S------------------------------------
----S-------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--------------------------------------S--------------------------
----------------------------------------------------S---------------------------
-------------------SSSS---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
--------------S---S-------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
----------------------------------------------S-----------S---------------------
----------------------------------------------------------S---------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------------------S------S-------------
S------------------------------------------------S------------------------------
-S---------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------------------------------------------------S-------------------------
---------SS-----------------------------------------------------------------S---
-----------------S---S-------------------------------------------------S--------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------------S------------------------
-------------------------------------S------------------------------S-----------
--------------------------S-----------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------S----------------------------------------------
-------------S-----------------------------SS-SS-SS-SSS-------------------------
------SS--------------------------S-----------SS-SS-S-SSS-SS-S------------------
----------------S------------------------------S-S------------------------------
-----------------------------------------------SSSSS--S-------------------------
--------------------------------------------------------------------------------
-----------S-----S-------------------------S-S----------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S----
-----S--------------------------S-S------S-----------------------S------S--S----
-----------S-----S--------------S-----------S--S-----------------S------------S-
-S--------------------------------------------S---S-------S---------S-----S-----
--------S-SS-------S---------------------------------------S-------------------S
S--S-------------------------------------S-----------S--------S----
>forward_1637
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-----------------TTGTCTCTTTGCCGCCTCTT-------------------------------------------
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-------------------------------------------------------------------
>reverse_2939
--------------------------------------------------------------------------------
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----------------------------------------------------------TGGAGACCCTAAACGGTGCA--
--------------------------------------------------------------------------------
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-------------------------------------------------------------------
>forward_2166
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------------------------------------------------------------------TCTCGGTTTGTAAT
GGGGGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4182
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---------------------CACATTGTGTTTTGGCACCCT--------------------------------------
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-------------------------------------------------------------------
>forward_3301
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-GGCCTGCAGGGGTCTTATTT-----------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_5676
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---------------------------------------------------------------------------AAGCT
AGGCCCCGATACCAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
