>input_sequence_34232
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-------------------------------------------------------------ATGTGTGGAAAGATGGATG
AGGTTCACCTCCACATGGAGCACAAGGTATGATTTTGTTCAAGCTGGCTGCTGGCAATCGATCTATCTTTGTCTTGTCAA
AATTAAAATGCTAATTTTTGAAGTTTTGGTA----CTTGTCACAAAACAAAAATAGTGTTGACAAGTCGATTTATGTTCA
CCAATTTAGAGCCTACCCGGTGGAGAATTTGGAGGAGTTCGTGCCTCGATGTCCAAACCTCCGACGTCTAGCACTTCTAG
GCCAAACAGCATGGTTGTCAAGGTAACTTGGATTAGTTTCTCGTCTTAGAATCAACAAAGTTGTTTTATGAACAGATGC-
---ATGATTCAGAGAAATATTTTGGCCCTCAATTTGCAGAAAGTGTGCCCACGGGAGTACATCCCGCCGCACATCGTGGC
GGAGGCAATCTCGACGCTGCACGGCCTCGACCTGCGGTGGTCGGGGCCGATCACGCCCAGCGAGCGGCTCTACGTGGAGC
AGTACGTGATGGCCAAGTACCCGCAGTACTCTCACGGACTCATTGAGGAGGAAAGCTGTGACAAGGACGACCTCTACTCC
ACCTACTATAGCACCGGCAGCATGTCTGCCTCGCCCGAGGGCGGATCCGGCGAGCGGCGGAGGCCGTCGCCGACGGGGTC
CCCGTCGTCGGCGAGGCCTGACATCGACATGGTCAGGTTGGAGCCGTCGCGTCTGCTGGACATCCTGACCAAGAAGTCTT
CCTTCACGGGGAGCTTCATCTCCATACCGGAGATCCAGGCCAGGAACAGGGTGCTCCGGCACTGCGGACTCACCGACGAT
GAGTACCTCGTGCTCTTCGCCGCCACGCCCAAGGACGCCATGATGCTGGTAGGTTCAGTTGCAACTTCCTC--TTCTTTT
TAAAGAAAAGGGTATCCCTCCGCCCCATTTTTATCAGAAACAAGGCAAGAAAATAACCCT-----CAG----GCAGAGCC
AAAGTAATAGTGATCTAGAAAATTCTTATCTTTCTTTACAGAAGGAG---------------------------------
-------------------------------------------TAGATAAATTAATAGAGGTCCTTGAACTACT-CTCTC
TAAACTTCATTGCTTTTACATATGACGGTTAACTGGGTT--------TTTTTTTCATATCCTAAAGAAGGTTGAGAACCC
CGGCCTTTGCTGGCTTGAAGAGAGTCCTAGTTTTCTAGTTTGCCTTTGAGCAGATTGTAACCAAATGTTAGTTGATTAAT
GAAGCTTCCAATTTCGATGCAAAAATTAAAAACCCGGCCTGTACATCATA-TTTTAAAGTTATCA--TGTGATTTATTCA
AACGATTACATAA-----------TAGATGGTGACACAAATCCAAAAGACATACCAAATGCACATACGGCCACGAGGAGC
ATCTTCAGGAAAGATGCCGAT-AATGTAGGGCTATATATAAATCAGCAACCCTGGAATTTTTTTGAGTGGCAACAGAGTA
TGTTTTATTATGAGAATCTACAACATCC----------------------------------------------------
-------------------------------TATAAAATTCCTGCAAGCCAAAAAGGGCCTAAATGTCCAAGTACCTTTT
GTTTGTCTTCACTTGCAATGTGTCTTTATGCTCATAGTAAAGCCTAGTAAGTATTTAC----------------------
--------------------------------------------------------------------------------
------------------TGCCTTCATTCAAATAAATAAGTCGCACTCATTTAAGATCTAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTTACCAAT
GAATTTACCCAATAAATTATGAGTTATGTGTGACAAATACAT--ATACCATTGAATCCTTGAATTTGTATTCAAAAAAAG
TTCTCAATTGTGTACTTTTAA-GTCACGTAACTTATATGT----------------------------------------
----------------------------------------TATTATTGGTCTAATTGATGGTCAAAACTGAATTTCGAAA
TATGAGTGTGCCTTAAT-------------------------------CATTAGAATGGAGGGAGTATATAATTGGATCC
ACCTGAAACTTTGTACGCAGATAGGCGAGAGCTACCCCTTCTTCCGGAGCAACTACTACATGTCAATCCTAGCCGACGAC
CGCGACTGCATCCACGCATTTGCGGCGTACAAGGAGGCCAAGGTCATCGCGGCGCCGGAGTCGTGGCTGGATCTCCGCAT
CAAGGGCTCACAGCTCAGCCAGTACTTCCGCCGCAAGTCAAAACTCACGCACAAGGGCCTCTTCGCCTACCCAGCCGTCT
CCGCCGCAGCCCCCGCCACCGACGACGGAATCGCCCCGCCACCGCCGCGCTACTCCATGCACTGGGTCTCCGAGGCGCAC
CGCAACGGCTGGCACGTGCTCCTGGACGCCACCGCGCTGGTCGTCGGCGAGGACCGGCTGCCGCTGTCGCTGCACCGGCC
GGACCTCGTGCTGTGCACGCTCGACGACACGCACTCGCAGCAGCCGTCCGCCAAGGTGACATGCCTGCTCGTCAGGAGGC
GGTCCTTCGACACCTCCGCCCTG------CCGCAGCCGCAGCAGAAACAGTGA---------------------------
--------------------------------------------------------------------------------
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--------------------
>chr3A_1_TraesCS3A01G138700
TTCTCACATATGAGTGGGCTCAGGTTAACAACCTGTTTCACAGCTCAGCCCAAACAATCGAGGTCCACAGACCAGCAAGA
TCAGCACACAGACGAACGTCTTACGTTCTGGGCTCACTCAGTCGCACTGTTTGATACTGTATACGTTGATGTATCCTATA
TTTTCGCTGCTTCCATCGATTTCTGCAAAACCCAAGTCAGGAACCAACACCAGCAATTTCGGGAGCATGTGAGCTCGAGC
ACTGAATTGTTGCGTCCACTATACCGCTAGACTAAGTCAATATACTTTGCATGGTGCAGCACGCTACC-TAGCACTTTTA
AATTTG---TTGATAGTTAAGTATGCCGTTGAACGAAATGG---------GACATTTTCTGTACACAACGTACACACCAT
A--CTCTGATCGAACGGACACATAACGCTGGCCAAGTAAGTTGGACGGTGTAGGTGTTGCATCCGGCACCGCACACGTCA
GACAAGAATCATCGTAGCAGAACTCGCTGTTGAAAAAACACTTTTACAGACTAAGAAAGACCAAGCGGCCAATAATGGAG
GGATGAGCACGGCATATACCTTTAGCTGGGTTCCATGGACCCATACTAATCAATTAGTTAATCAACCGATCCTCAAAAAA
AATTTAGTTAATCAACCAATTAACAAAATAGCTGTCGTTGCGCGTCACATAAAACAACTAGGGATTTCTTGTCAGCAAAA
TTTGTTTATGCTCCCATGAGAGGGACATCCATATTTGTTATATGTTCAACTACTAGTGCACAACCGGGGTGACACGCGCA
TAA--AATAAAGAGCCATTTCTTCCTTCTTCCTTCGGAACCAAACTCAGAAGCAACCAAGGCAGGGATCCAACATCTAAA
CCGAGGCGACCTTTCTTGCTACATATCCCTCTGCATCACGACCTTGTACTTACTTGACTTCACCTTGCACTCCCACAGTC
AT---ATAGCTAGTTGCCACTTGGTTGCCTTTCTAGA-CCATCAGACCAAGAACACACAGCATGTGTGGAAAGATGGATG
AGGTTCACCTCCACATGGAGCACAAGGTATGATTTTGTTCAAGCTGGCTGCTGGCAATCGATCTATCTTTGTCTTGTCAA
AATTAAAATGCTAATTTTTGAAGTTTTGGTA----CTTGTCACAAAACAAAAATAGTGTTGACAAGTCGATTTATGTTCA
CCAATTTAGAGCCTACCCGGTGGAGAATTTGGAGGAGTTCGTGCCTCGATGTCCAAACCTCCGACGTCTAGCACTTCTAG
GCCAAACAGCATGGTTGTCAAGGTAACTTGGATTAGTTTCTCGTCTTAGAATCAACAAAGTTGTTTTATGAACAGATGC-
---ATGATTCAGAGAAATATTTTGGCCCTCAATTTGCAGAAAGTGTGCCCACGGGAGTACATCCCGCCGCACATCGTGGC
GGAGGCAATCTCGACGCTGCACGGCCTCGACCTGCGGTGGTCGGGGCCGATCACGCCCAGCGAGCGGCTCTACGTGGAGC
AGTACGTGATGGCCAAGTACCCGCAGTACTCTCACGGACTCATTGAGGAGGAAAGCTGTGACAAGGACGACCTCTACTCC
ACCTACTATAGCACCGGCAGCATGTCTGCCTCGCCCGAGGGCGGATCCGGCGAGCGGCGGAGGCCGTCGCCGACGGGGTC
CCCGTCGTCGGCGAGGCCTGACATCGACATGGTCAGGTTGGAGCCGTCGCGTCTGCTGGACATCCTGACCAAGAAGTCTT
CCTTCACGGGGAGCTTCATCTCCATACCGGAGATCCAGGCCAGGAACAGGGTGCTCCGGCACTGCGGACTCACCGACGAT
GAGTACCTCGTGCTCTTCGCCGCCACGCCCAAGGACGCCATGATGCTGGTAGGTTCAGTTGCAACTTCCTC--TTCTTTT
TAAAGAAAAGGGTATCCCTCCGCCCCATTTTTATCAGAAACAAGGCAAGAAAATAACCCT-----CAG----GCAGAGCC
AAAGTAATAGTGATCTAGAAAATTCTTATCTTTCTTTACAGAAGGAG---------------------------------
-------------------------------------------TAGATAAATTAATAGAGGTCCTTGAACTACT-CTCTC
TAAACTTCATTGCTTTTACATATGACGGTTAACTGGGTT--------TTTTTTTCATATCCTAAAGAAGGTTGAGAACCC
CGGCCTTTGCTGGCTTGAAGAGAGTCCTAGTTTTCTAGTTTGCCTTTGAGCAGATTGTAACCAAATGTTAGTTGATTAAT
GAAGCTTCCAATTTCGATGCAAAAATTAAAAACCCGGCCTGTACATCATA-TTTTAAAGTTATCA--TGTGATTTATTCA
AACGATTACATAA-----------TAGATGGTGACACAAATCCAAAAGACATACCAAATGCACATACGGCCACGAGGAGC
ATCTTCAGGAAAGATGCCGAT-AATGTAGGGCTATATATAAATCAGCAACCCTGGAATTTTTTTGAGTGGCAACAGAGTA
TGTTTTATTATGAGAATCTACAACATCC----------------------------------------------------
-------------------------------TATAAAATTCCTGCAAGCCAAAAAGGGCCTAAATGTCCAAGTACCTTTT
GTTTGTCTTCACTTGCAATGTGTCTTTATGCTCATAGTAAAGCCTAGTAAGTATTTAC----------------------
--------------------------------------------------------------------------------
------------------TGCCTTCATTCAAATAAATAAGTCGCACTCATTTAAGATCTAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTTACCAAT
GAATTTACCCAATAAATTATGAGTTATGTGTGACAAATACAT--ATACCATTGAATCCTTGAATTTGTATTCAAAAAAAG
TTCTCAATTGTGTACTTTTAA-GTCACGTAACTTATATGT----------------------------------------
----------------------------------------TATTATTGGTCTAATTGATGGTCAAAACTGAATTTCGAAA
TATGAGTGTGCCTTAAT-------------------------------CATTAGAATGGAGGGAGTATATAATTGGATCC
ACCTGAAACTTTGTACGCAGATAGGCGAGAGCTACCCCTTCTTCCGGAGCAACTACTACATGTCAATCCTAGCCGACGAC
CGCGACTGCATCCACGCATTTGCGGCGTACAAGGAGGCCAAGGTCATCGCGGCGCCGGAGTCGTGGCTGGATCTCCGCAT
CAAGGGCTCACAGCTCAGCCAGTACTTCCGCCGCAAGTCAAAACTCACGCACAAGGGCCTCTTCGCCTACCCAGCCGTCT
CCGCCGCAGCCCCCGCCACCGACGACGGAATCGCCCCGCCACCGCCGCGCTACTCCATGCACTGGGTCTCCGAGGCGCAC
CGCAACGGCTGGCACGTGCTCCTGGACGCCACCGCGCTGGTCGTCGGCGAGGACCGGCTGCCGCTGTCGCTGCACCGGCC
GGACCTCGTGCTGTGCACGCTCGACGACACGCACTCGCAGCAGCCGTCCGCCAAGGTGACATGCCTGCTCGTCAGGAGGC
GGTCCTTCGACACCTCCGCCCTG------CCGCAGCCGCAGCAGAAACAGTGAATGGAGTGGTGATCCG---GTCTCGCC
CTTGCTAACACGAACTACTGCTGTCGCCGTCTCATCGTGCGTGATGTGCTTG----CATGTCCCGCAAAATAAAGCTGCA
TGCACGGATCTGCTTGTCTATGAGTAAGGGGTGTGTGTGTGTATGTTTGAGCACGAATTGTTTCGGGGTTTTTGGAAGAC
GGAACACATGTACATCTCAACTGGTTATGTTAATCGTTTTATATCTAATAAGGCGAAACAATACTCTATTTTCTTCCACA
TAAACGGAGACAATACTCCCAACCCTAGCCGTGGCCACCAAAACATCCCTAAACGTCGCCGCCTTGGTCCCCACTCCTGA
TCTTCCCTGTCCGGCAGCCTCGTTGTTGGCTAGAGAAATGGGGCTTTGTCCGTCTCGTTTTTTTTCTTCGTTGTTTCTCT
GATGACATCGACGAGATGGTGGCAATGACAGCATGTTGGAATAATATATTTAAGATCTCTTCCCCATCTCGACGATGTCT
GATCCAGCTTTGACGAAAGGCATGTGAGAGTTTGTGTCTTCAGATCTGTTGGTTCCCTTTAGATATTGGCAGCTGGTTTG
TCTTTTAAAGGGAGTTATTGGCTGGCTACTAGTGCGGCGACTTTAACATCTTCTTTTGTGTTGTTTTGTGGCATGATTCG
GTTCTCCAACCCTCTGAACTGACACTAATGAATTGCAGACATGTATTGCGTGTGGTGATGCTTCAATCGATGCTACTTCA
GTGATTTATAGATCTAGTTTTGAAGGACGAGTAGCTATTGCAGTCTTCAAACTGCTATAGTGAGGGCGTTTGCAGGTGTC
TCTTTCCTTTATCTTTGCTGTCTCTTTCCTTTACCGTTGGTTCAATGCAATATTTAATCTCCGATGGGAGATGTATAATC
AGAGAAAAAAATGCTAGGGTGATTTACAAAGTAATTTTACTTTTACTAGTTGTTCTGCATCCACTTGTCTATTCATTGTG
TTGGCTTTTTTAAAACATTA
>chr3B_256
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CCACTATCCAGCTAGACCAAGTCAATATACTTTGCATGGTACAGCACGCTATCGTATCATTTTTA
TATTCAGTTTTGACAGTTAAGTATGTCGCTGAACGGAATGGCTCTGTGTCGACATTTTTTGTACA--ACATTCACACCAT
ACTCTCTGATCGAACGGACACGCAGTGCTGGCCAGCTAAGTTCGACGGTGCAGGTGTTGCATCGGG-----CACACGTCA
GACAAGAATCATCGTAGCCGAACTCGCTGTTGAGAT---ACTTTTACAGACTAAGAAAGACCAAGCGGCCAATAATGGAG
GCATGAGCACGGCATATACCTTTAGCTGGGTTCCATGGACCCATATTAATCAA---------------------------
---TTAGTTAATCAACCAATTAACAAATTAGCTGTCGTTGCGCGTCAGATAAAACAACATGGGGTTTCTTGTCAGCAAAA
CTAGTTTATGCCCCCATGAGAGGGACATCCGTATTTGTTATATGTTCAACAACTAGTGCATAACCGGGGTGACAGCTTGC
CCAACAAAAAATAGCCATTTCTTCCTTCTTCCTCCGAAACCAAACTCAGAAGCAACCAAGCCAGAGATCCAACATCTAAA
CCGAGGCGACCTTTCTTGCTACATATTCCTCTGCATCACGAACTTGTACTTACTTGACTTCACCCTGCACCTCCACAGTC
ATCATATAGCTATTTGCCACTTCGTTGTCTTTCTAGGCCCATCAGATCAAGAACACACAGCATGTGTGGAAAGATGGATG
AGGTTCACCTCCACATGGAGCACAAGGTATGCTTTTCTTCAAGCTGGCCGGTAGCAATCGATATATCTTTGCTTTGTCAA
AATTAAAATGCTAATTTTCGAAGTATTGATATATAGTTCTCTCAAACCAATAATAACGTTGATAAGTCGATTTATCTTCG
CTAATTTAGGATCTACCCGGTGGAGAATTTGGAGGAGTTCGTGCCTCAATGTCCAAACCTCCAACGTCTGCCACTTCTAG
GCCAAACAGCATGGTTGTCAAGGTAACTAGACTAAA---CTCGTCTTACAACCAACAAAGTTATTTTTTGAACACATGAA
TGAATAGTTCATATAAATATTTTGACCTCCAATTTGCAGAAAGTGTGCCCGCGAGAGTACATCCCGCCACACATCGTGGC
GGAGGCGATCTCGACGCTGCACGGCCTCGACCTGCGGTGGTCGGGGCCGATCACGCCCAGCGAGCGGCTCTACGTGGAGC
AGTACGTGATGGCCAAGTACCCGCAGTACTCCCACGGCCTCATCGAGGAGGAAAGCTGTGACAAGGACGACCTCTACTCC
ACCTACTATAGCACCGGCTGCATGTCTGCCTCGCCGGAGGGCGGATCCGGCGAGCGGCGGAGGCCGTCGCCGACGGGGTC
GCCATCGTCAGCGAGGCCCGACATCGACATGGTCAGGCTGGAGCCGTCGCGTCTGCTGGACATCCTCACCAAGAAGTCTT
CCTTCACGGGGAGCTTCATCTCCATACCGGAGATCCAGGCCAGGAACAGGGTGCTCCGGCACTGCGGGCTCACTGACGAT
GAGTACCTCGTGCTCTTCGCTGCCACGCCCAAGGACGCCATGATGCTGGTAGGTTCAGTAGCAGCTTT-CTTTTTCTTTA
AGAGAAAAGGGGTTTCCCTCCGCCCAATTTAACAGAAACAGT-GGCAAGAAAACAAACTGTCCCAGCGCTAAGCAGAGCC
AAAGTAGC--TGAGCTAGTAACAACTTTTTTTTCTAC-------------------------------------------
--------------------------------------------------------AGAGGTCCTTGAACTACTACTCTA
TAAACTTTCATTGCATTACGTACCACAGTTACGTTTCTAAACCGAGTTTTTTTGTTGTTG-----------AGAA-----
--------------------------------------------------------------------------------
-------------------------------CCCCGGCCTGTGCATCATATTTTTAAAGTTATCA--TGTGATTTATTCA
AACGATTACATAATTACATAATAGTAGATGGTGACACAAATCCAAAAGACACACCAGATCCACATACGGCCGAGAGGAGC
ATCTCCTCAAGAGATGCCAATCAATGTAGGGCTATATATAACTCAGCATCCCTAGAAATTTTTTGAGGGGCAGCATAATA
TGTTTTAATGTGAGGATCTACAAAATCCTATTCCCTCCATAACTTAGTATAAGATATTTTTTGACACTGTTATAAACTAT
AAAAACATTTTATAAAAAGTTACCGAGGGAGTATAAAATTCTTGCAAGCCAAAAAGGGCCTAATTGTCCAAGTACTTTTC
GTCTGTCTTCACTTTGAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TATCATTGAATGGTAGAAATTGTATTCAAAAAAA-
TTCTCAATTGTGTAATTTT-A-GTCACGTAACTTATACTCCCTCCGTCCCATAATGTAAGACGTTTTTTTGGCACTACAC
TAGTGTCAAAAACATCTTACATTATGGAACGGAGGGAGTATATTGTTGGCCTAATTGATGGTCAAACTTAAAATCAAAAT
ATATGCGTGATTTATTCTTTTCTTTTTTTGCGGCATGCGTGATTTATTCATTAAATTGAACGGAGTATGTAACTGGATCC
ACCTTAAATGTTGTACGCAGATCGGCGAGAGCTACCCTTTCTTCAGGAGCAACTACTACATGTCAATCCTAGCCGACGAC
CGCGACTGCATCCACGCATTTGCGGCGTACAAGGAGGCCAAGGTGATCGCGGCGCCGGAGTCCTGGCTGGACCTCCGCAT
CAAGGGCTCGCAGCTCAGCCAGTACTTCCGCCGCAAGTCAAAACTCACGCATAAGGGCCTCTTCGCCTACCCAGCCGTCT
CCGCCGCAGCCCCTGCCGCCGACGACGGAATCGCCCCGCCACCGCCGCGCTACTCCATGCACTGGGTCTCTGAGGCGCAC
CGCAACGGGTGGCACGTGCTCCTGGACGCCACCGCGCTGGTCGTCGGCGAGGACCGGCTGCCGCTGTCGCTGCACCGGCC
GGACCTCGTTATGTGCACGCTCGACGACACGCACTCGCAGCAGCCGTCCGCCAAGGTGACATGCCTGCTCGTCAGGAGGA
GGTCCTTCGACGCCTCCGCCCTG------CCGCAGCCGCAGCAGAAACAGTGAATGGAGTGGTGATTCG---GTCTCGCC
CTCGCTAACACAAACTACTGCTGTCACCGTCTCATCGTGCGCGATGTGCTTGCATGCATGTCCCGCAAAATAAAGC----
TGCACGGATCTGCTTGTCTATGAGTAAGG----TGTGTGTGTATGTTTGAGCACGAATAGTTTCGGGGTTCTCGGAAGAC
GGAACACATGTACATCTAAATTGGTTATGTTCATCGTTTTATATCTAAGCGAAAACAG---TACCCCCTTTTCTTACACG
CAAGCGGAAACAATACTCCCAACCCTA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr3D_256
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CCACTATCCCGCTAGACCAAGTCAATATACTTTGCATGGTACAGCACGCTATCGTATCACTTTTA
TATTCAGTTTTGACAGTTAAGTATGTCGTTGAACGGAATGGCTCTGTC-CGACATTTTTTGTACA--ACATTCACACCAT
ACTCTCTGATCGAACGGACACGCAGTGCTGGCCAACTAAGTTGGACGGTGCAGGTGTTGCATCGGG-----CACACGTCA
GACAAGAATCATCGTAGCCGAACTCGCTGTTGAAAT---GCTTTTACAGACTAAGAAAGACCAAGCGGCCAATAATGGAG
GCATGAGCACGGCATATACCTTTAGCTGGGTTCCATGGACCCATATTAATCCA---------------------------
---TTAGTTAATCAACCAATTAACAAATTAGCTGTCGTTGCGCGTCAGATAAAACAACTTGGAATTTCTTGTCAGCAAAA
CTAGTTTATGCTCTCATGAGAGGGACATCAATATTTGTTATATGTTCAACAACTAGTGCATAACCGGGGTGACAGCTTGC
TCAACAAAAAATAGCCATTTCTTCCTTCTTCGTCCGAAACCAAACACAGAAGCAACCAAGCCAGAGATCCAACATCTAAA
CCGAGGCGACCTTTCTTGCTACATACTCCTCTCATCACC-----TGTACTTACTTGACTTCACCCTGCACTTCCACAGTC
AT---ATAG---GTTGCTACTTCGTTGTCTTTCTAGA-CCACCAGATCAAGAATACGCAGCATGTGTGGAAAGATGGATG
AGGTTCACCTCCACATGGAGCACAAGGTATGCTTTTCTTCAAGCTGGCCGGTAGCAATCGATCTATCTTTATTTTGTCAA
AATTAAAATGCTAATTTTCAAAGTATTGATA----GTTCTCTCAAATCAATAATAATGTTGACAAGTCGATTTCTCTTCG
CTAATTTAGGGTATACCGGGTGGAGAATTTGGAGGAGTTCGTGCCTCAATGTCCAAACCTCCAACGTCTGCCACTTCTAG
GCCAAACAGCATGGTTGTCAAGGTAACT-GGAATAATTTCTCGTCTTACTATCAACAAAGTTGCTTTTTTAACACATGAA
TGAATAATTCATAGAAATATTCTGGCC--------GCAGAAAGTGTGCCCACGGGAGTACATCCCGCCGCACATCGTGGC
GGAGGCGATCTCGACGCTGCACGGCCTCGACCTGCGGTGGTCGGGGCCGATCACGCCCAGCGAGCGGCTCTACGTGGAGC
AGTACGTGTTGGCCAAGTACCCGCAGTACTCCCACGGCCTCATCGAAGAGGAAAGCTGTGACAAGGACGACCTCTACTCC
ACCTACTATAGCACCGGCTGCATGTCTGCCTCGCCGGAGGGCGGATCTGGCGAGCGGCGGAGGCAGTCTCCGACGGGGTC
ACCATCGTCGGCGAGGCCCGACATCGACATGGTCAGGCTGGAGCCGTCGCGTCTGCTGGACATCCTGACCAAGAAGTCTT
CCTTCACGGGGAGCTTCATCTCCATACCGGAGATCCAGGCCAGGAACAGGGTGCTCCGGCACTGCGGGCTCACCGACGAT
GAGTACCTCGTGCTCTTCGCCGCCACGCCCAAGGACGCCATGATGCTGGTAGGTTCAGTAGCAACTTCCCTTTTTTTTCC
AAAGAGAAGGGGGTTCCCTCCGCCCCATTTTTTT-AGAAACAAGGCAAGAAAACAAAACTGTTCCCAG----GATGAGCC
AAAGTAGT--TGAGCCAGTAACAACTACTCCCTCCATCTAAGTTTACTTAGTATTAAATTTGTGAAAAAAACCTTAGTAT
TAAATCAGCGACACTTATTTTAGAATGAATAGAGTATTTTCTATAGTTTCATTCGTAGAGGTCTTCGAACTGCTACTCAC
TAAACTTTCTTTGCTTTACATACCACAGTTACGTTTCTAAACCTACGTTTTTTTTCTATCCTAAAGGAGGTAGAG-----
--------------------------------------------------------------------------------
-------------------------------ACCCGGCCTCTACATTATATTTTTAAAGTTATATCCTGTGATTTATTCA
ACGACTG-CAGAA-----------TAGATGGTGACACAAATCAAAAAGACACACCAGATGCACATACGGCCACGAGGAGC
ATCTTCTGAAAAGATGCCAATCAATGTGGGGCTATATATAAATCAACAACCCTAGAATAA-TTTGAGGGGCACCCGAGTA
TGAATTACTGTGAGAATCTACAAAATCC----------------------------------------------------
-------------------------------AATAAAATTCTCGCAAGCCAAAAAGAGCCTAAATGTCTAGGTA------
GTCTGTTTTCATTTGCAATGTGTCTTAGACTCATAGTC---GCCTATTAAGTATTTATTTTCTAGAATATACACGAGCGT
GTATATCATATGTTGATAGGAAAATAAGGGTGAAGAAACCCTCAACCAAGGTTTGTAAGAACCCGGTTTTACTAGGCTAG
TAGCCTAGTAAGATGTATTGCCTTTGTTCCAGTAAATAAAGTGCGCGCATTTAATTTAGGACCCTTATAATTCCCGAACG
TTTGAATTTTAAGCATTCCTTCCAAACGTTTTTTCATGGCAACTTTAGTTGACACGAGGTGGCAACTTTAGTTGTTAAAA
CATGACAATTTTGTCTCAATTCTTTTTTGTCAGAAAATTACCATGTTTACCAACCTCACGTGAACTAAAATTGCCACGAA
AAGTGTTTGGGTTGCCATGCTTAAAATCCAAATGTTCGGGATTTATCATTGGCCTTAATTTAAGATATAGCTTTACCAAT
GAATTTACC-AATAAATTATGAGTTAATGGCGACAAATATTATAATACCATTAAATGGTCGAATTTGTATTGAAAATAAG
TTTTCAATTGTGTGATTCT-AAGTCACGTGACTTATCTG-----------------------------------------
------------------------------------------TTATTGATCTAATTGATGGTCAAAATTGAATTTGAAAA
TATGAGTATGCCTT----------------------------------------AATGGAGGGAGTATATAACTGGATCC
ACCTGAAATTTTGCACGCAGATAGGCGAGAGCTACCCCTTCTTCAGGAGCAACTACTACATGTCAATTCTAGCCGACGAC
CGCGACTGCATCCACGCATTTGCGGCGTACAAGGAGGCCAAGGTCATCGCAGCACCGGAGTCCTGGCTGGACCTCCGCAT
CAAGGGCTCACAGCTCAGCCAGTACTTCCGCCGCAAGTCAAAACTCACGCATAAGGGCCTCTTCGCCTACCCAGCCGTCT
CCGCCGCAGCCCCTGCCGCCGACGACGGAATCACCCCGCCACCGCCGCGCTACTCCATGCACTGGGTCTCCGAGGCGCAC
CGCAACGGGTGGCACGTGCTCCTGGACGCCACCGCGCTGGTCGTCGGCGAGGACCGGCTGCCGCTGTCGCTGCACCGGCC
GGACCTCGTGCTGTGCACGCTCGACGACACGCACTCGCAGCAGCCGTCCGCCAAGGTGACATGCCTGCTCGTCAGGAGGA
GGTCCTTCGACACCTCCGCCCTGCCGCCACCGCAGCCGCAGCAGAAACAGTGAATGGAGTGGTGGTGATTGAGTGTCGCC
CTTGCTAACACAAACTACTGCTGTCGCCGTCTCATCGTGCGTGATGTGCTTGCATGCATGTCCCGCAAAATAAAGCTGCA
T----GGATCTGCTTGTCTATGAGTAAGG----TGTGTGTGTATGTTTGAGCACGAATTGTTTCGGGGTTCTCGGAAGAC
GGAACACATGTACATCTAAATTGGTTATGTTCATCGTTTTATATCTAAGCGAAAACAG---TACTCCCTTTTCTTACACG
CAAGCGGAAACAATACTCCC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-------S---------S----------------------S----------S----S--------
S---SS-------S-----------S---------S----------------------S------SS--S-S--------
---------------------SS-SS---------S--------------S------------S--SSSSS---------
------------------S----------------SSSS-----------------------------------------
-S-------------------------------------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------------------------S-------------------S-----------S--------------------
S-S-----------------------------------------------S---------S-------------SSSSSS
-S-----S---S---------------------S--S-----------------------S---S---------------
--------------------------S--------------S----------------------S------S--------
----------------------S----S------------------S---------------------------------
-------------------------------S----S-----------S-S-S-------------------S-------
------------------S-----S---S------S--S--S----S---S----S-------------------S---S
-S-------S-S-----------------------------------S--------------S------SS---------
----------------------------S------S------------S------------------S------S---S-
-----S-----S---------------SS---------------------------------------------------
------S-------------------------------------------------------------------------
-------------------------------S-----S-----S------------------------------------
------------------S----------------S--------------------------------------------
S--S--------------S------------------S------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------------------S---------SS--------S
S--SS---S----S------------------S-S------------------S--S-----------------------
------S-SS---S----S--SSS---S-------S-SS-SSSSS-S---------------------------------
----------------------------------------------S-SS---SS-------------------------
-------SS--SSS--------SS--S----SS-SSS-S---------------SS----------S----S---SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------
---------------------------------------------------S----S-----------------------
------S-S---------S----------------------------------S-------------S----S-------
-------S-S-------------S--------------------------------------------------------
-----------------------------------------S---------------------------------S---S
--S-----------------------SSSSSSSSSSSSSSS-----S----------S----------------------
--------------------------------------------------------------------------------
------------------------SS---S-S-------SSS--S-S-------SS-SSS--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------SSS-S--------SSS--------------SS-S--------------------
--------------S----S-------------------S----------------------------------------
-------------------------------------------------------------------S-------SS---
-------S------SSS------------------------------------S------------------S-------
--------S-----------------------------------S-----------------------------------
--------------------------------------------------------------S--------S--------
---------------------------------------------------S----------------------------
-------------S---S--------------------------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------------------------------S
------------------------------------------------------------------S-------------
-----------S--------------------------------------------------------------------
-----------------------------SSSS-------------------------------------S-S-------
-----------------S--S----------S----------------SSSSSSSS-SSSS-----SS-------S---S
S--S----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_99
-------------------------------------------------------------------------------A
TCAGCACACAGACGAACGT-------------------------------------------------------------
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>reverse_1248
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-----------------------------------------------GATGTCCAAACCTCCGACGT-------------
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>forward_223
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-------------------------------------------CCAACACCAGCAATTTCGGG-----------------
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>reverse_2248
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-------TGCTGGCTTGAAGAGAGTCC-----------------------------------------------------
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>forward_988
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--------GCTAGTTGCCACTTGGTTGC----------------------------------------------------
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>reverse_2349
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----------------------------AAAACCCGGCCTGTACATCA--------------------------------
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>forward_2267
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-------TGCTGGCTTGAAGAGAGTCC-----------------------------------------------------
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>reverse_4494
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-------------AGATGGTGGCAATGACAGCA-----------------------------------------------
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--------------------
