CLUSTAL X (1.81) multiple sequence alignment input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CTGTCACAGTTGAGTAGTTGACTTGACCGGCCGAGGGATGAAACAATACG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 GTGTGCGTGTGT-------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs S---SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TGTTACAACGTGAAACATGTAGGATGAGCGTTGGGTACTACTTGGTTCAT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CATTGTCTAGAAACCGCATTTTACTGTGTTACATGTATAGTAGTACACCT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 AATAGTTACTCAAACTAAATGCGCTGACCATGCCACATATCCAGAAAAGG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CTTAAACGGTAGGGGAAACTAGGGTAGCATCTTACTCCCTCTGTCCCAAA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 ATAAGTGACTCAAAAATGACTCAACTTTGTACTACAGTTAGTACAAAATT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GAGTCATTTTTGAGTCACTTATTTTGGGACGGAGGGAGTACATTACATTA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GGTACTGGTCCAAGTAGTTAACGCTTCCTCTCTCTTTTTTTCCCACAAGT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TCTTGTCTTTGATCGAAGAGGAGTTTATGTATGGCCGCGGCGTTTGCCTT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CTTTCTACTTCTTGGATCAGTTTGACAATACTATGACCGAGCTTTATGTT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CAAACCACGACTCTAGTTATCTCATTCCTAAAGACTTCTCTACACGGACA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 AATTTACCAATATTAATTCATGATGGTACAACACGATCTAAACCATCTAG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 ACTGGCTTTCATGTTTAGATCACGACTGTATGGTTAGCTTAAGGGCATCT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CTTTGGTCAAATTAAGTACCCCAGCCCATAATGAATATCGTCTGCATACC chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 AATTAATAATTCTACCCAACTAAACCATCCCGTCGGTGCAATGATTAATA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TAAAATTGGCACTTGTATACTAGTACTGGTGATATATAATAAAGTTGAGC chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 AACTTGGCTATTAGATGCAAACCACAAGTTAATTGAGATGCGACAGCAAG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GCGGCATGTGCATCGTTAATATTATGCCTGCACTTCGTGTTTTGGGAAGT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_870 GCGGCATGTGCATCGTTAAT------------------------------ reverse_2497 -------------------------------------------------- forward_896 --------------------------CCTGCACTTCGTGTTTTGGG---- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CCCTTACACTGCCACTGACTGAGAGCTTTCGTGTGTGTGTGTGTGT--GC chr6B_916 ---------------TGACTGAGAGCTTTCGTGTGCGTGTGTGTGA--G- chr5D_917 ----------------GACAGAGAGCTTTCGTGTGCGTGTGTGTGT--G- chr5A_917 ----------------GACAGAGAGCTTTCGTGTGCGTGTGTGTGTGTG- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSS--------------------S-------------S forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 ATGTGGGAAGAAGAGGAAGAGGAAGAGAGAGTCGGGGAGCGCCGGC---- chr6B_916 -------AGACAGAG--AGAGGAAGAAGGAGACAGGGAGTGCCAGC---- chr5D_917 -------AGGGAGAGGGAGAGGGAGGAGGAGAAAGGGAGTGCCAGC---- chr5A_917 -------AGGGAGAGGGAGAGGGAGGAGGAGAAAGGGAGTGCCAGCCCGG chrUn_943 ----------GAGAGAGAGAGGGAGAAGGAGACAGGGAGTGCCAGC---- chr1D_958 ---------GAAGAGGAAGAGGAAGAAGCAGAGCGAGGAGGA-GGC---- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSS-S-----------------SS---S-S-----S---------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 ------ATGGGTCTAGTCTCAAGTGCCCTCGAATGGTGGGAGGAGTGGCA chr6B_1_TraesCS6B01G003600 CCAGAGATGGGTCTAGTCTCAAGTGCCCTCGAATGGTGGGAGGAGTGGCA chr6B_916 CCGGAGATGGGTTTCATCTCAGGTGCTCTCCAATGGTGGGAGGAGTGGCA chr5D_917 CCGGAGATGGGTCTCGTCTCAGGTGCTCTGAAATGGTGGGAGGAGTGGCA chr5A_917 CCGGAGATGGGTCTCGTCTCAGGTGCTCTGAAATGCTGGGAGGAGTGGCA chrUn_943 CCGGAGATGGGTCTCGTCTCAGGTGCTCTCCAATGGTGGGAGGAGTGGCA chr1D_958 CTGGAGATGGGTCTCACCTCAGGTGCTCTGGAATGGTGGGAGGAGTGGCA chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs --S-----------S------S----S----------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GCTGCGTGTCCTTGTGCTCGGCAGCCTGTGTGTCCAGTTTTTGCTCTTCT chr6B_1_TraesCS6B01G003600 GCTGCGTGTCCTTGTGCTCGGCAGCCTGTGTGTCCAGTTTTTGCTCTTCT chr6B_916 GCTGCGTGTCCTGGTGCTCAGCAGCCTGTGTGTCCAGTTCGTCCTCTTCT chr5D_917 GCTGCGTATCCTGGTGCTCAGCAGCCTATGTGTCCACTTCTTCCTCTACT chr5A_917 GCTGCGTATCCTGGTGCTCAGCAGCCTATGTGTCCAGTTCTTCCTCTACT chrUn_943 GCTGCGTGTCCTGGTGCTCAGCAGCCTGTGTGTCCAGTTCCTCCTCTTCT chr1D_958 GCTGCGTATCCTGGTGCTCAGCAGCTTGTTTGTCCAG-TCCTCCTCTTCT chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------S------S-------------------S--S------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TCTCCATATGGGTGCGTCGAGTCCCTGGCCTACGCAGGCTGAGAGCGGTG chr6B_1_TraesCS6B01G003600 TCTCCATATGGGTGCGTCGAGTCCCTGGCCTACGCAGGCTGAGAGCGGTG chr6B_916 TCTCCATCTGGGTGCGCCGAGTCCCCGCCCTACGCAGGTTGAGGGTGGTG chr5D_917 TCTCCATGTGGGTGCGTCGAGTCCCCGGCCTACGCAGGCTGAGAGTGGTG chr5A_917 TCTCCATGTGGGTGCGTCGAGTCCCCGGCCTACGCAGGCTGAGAGTGGTG chrUn_943 TCTCCATCTGGGTGCGCCGAGTCCCCGCCCTACGCAGGTTGAGGGTGGTG chr1D_958 TCTCCATCTGGGTGCGTCGAGTCCCCTGCCTACGTAGGCTGAGAGCGGTG chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------S-----------------S------------------------ forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GTGTGGATGGCGTACATTGGAGGCGACGCCCTGGCCATCTACGCTCTTGC chr6B_1_TraesCS6B01G003600 GTGTGGATGGCGTACATTGGAGGCGACGCCCTGGCCATCTACGCTCTTGC chr6B_916 GTGTGGATGGCGTACTTAGTAGGCGACGCACTGGCCATATATGCCCTTGC chr5D_917 GTGTGGATGGCGTACATAGGAGGCGACGCCCTGGCAATCTACGCCCTTGC chr5A_917 GTGTGGATGGCGTACATAGGAGGCGACGCCCTCGCAATCTACGCCCTTGC chrUn_943 GTGTGGATGGCGTACTTAGGAGGCGACGCACTGGCCATCTATGCCCTTGC chr1D_958 GTGTGGTTGGCGTACATAGGAGGCGATGCCCTCGCCATCTATGCCCTTGC chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -----------------S--------------------------S----- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CATCCTCTTCAACCGCCATAAGGAGCGTACGCCGTCGACGACGACACTTG chr6B_1_TraesCS6B01G003600 CATCCTCTTCAACCGCCATAAGGAGCGTACGCCGTCGACGACGACACTTG chr6B_916 CACCCTCTTCAACCGACATCAGCAGCA------------GACGACAAATT chr5D_917 CACCCTCTTCAACCGCCATAAGCAGTG------------GACGGCGGATG chr5A_917 CACCCTCTTCAACCGCCATAAGCAGTG------------GACGACGGATG chrUn_943 CACCCTCTTCAACCGACATCGGCAGCG------------GACGACGGATG chr1D_958 CACCCTCTTCGACCGTCATCAGCAACG------------AACAACAGATG chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs --S-------------------S----SSSSSSSSSSSS-------SS-- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGGTTGGTGAGGGCAGGAGCGCA---GGC------GACCTGGAGATCGTA chr6B_1_TraesCS6B01G003600 TGGTTGGTGAGGGCAGGAGCGCA---GGC------GACCTGGAGATCGTA chr6B_916 TGGTGGGTTAGAGCAGGA---------GCAGCAGTGGCCTGGAGGTGATA chr5D_917 CGGTGGGTGAGAGCAGCA---------GC------GACCTGGAGGTGATA chr5A_917 CGGTGGGTGAGAGCAGCA---------GC------GACCTGGAGGTGATA chrUn_943 TGGTGGGTGAGAGCAGGA---------GCAGCAGTGGCCTGGAGGTGATA chr1D_958 TGGTGGGTGAGAGCAGCAGCAGCGGCGGC------GGCCTGGAGGTGCTA chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----S------S--------SSS---------------------S-SS-- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGGGCGCCTGTTCTCCTCATCCACCTTGGTGGCCATGTAACATTGAGTGC chr6B_1_TraesCS6B01G003600 TGGGCGCCTGTTCTCCTCATCCACCTTGGTGGCCATGTAACATTGAGTGC chr6B_916 TGGGCTCCTGTTCTCCTCATCCATCTGGGTGGCCAAGTGACATTGAGTGC chr5D_917 TGGGCGCCTGTTCTCCTCATCCACCTGGGTGGCCACGTGACATTGAGCGC chr5A_917 TGGGCGCCTGTTCTCCTCATCCACCTGGGTGGCCACCTGACATTGAGCGC chrUn_943 TGGGCTCCTGTTCTCCTCATCCATCTGGGTGGCCAAGTGACATTGAGCGC chr1D_958 TGGGCGCCTGTTCTCCTCATCCACCTGGGTGGCCAGGTGACATTGAGCGC chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs --------------------------S--------S--S----------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CTTCAGCCTCGAGGACAATGAGTTGTGGCTTCGACATGTCATAACTCTTG chr6B_1_TraesCS6B01G003600 CTTCAGCCTCGAGGACAATGAGTTGTGGCTTCGACATGTCATAACTCTTG chr6B_916 CTTCAGTGTGGAGGACAACGAGTTGTGGCTTCGACATGTCATAACTTTGC chr5D_917 CTACTGCGTCGAGGACAATGAGTTGTGGCTACGACATGTCATAACTCTGG chr5A_917 CTACTGCCTCGAGGACAATGAGTTGTGGCTACGACATGTCATAACTCTGG chrUn_943 CTTCAGTATGGAGGACAACGAGTTGTGGCTTCGACATGTCATAACTCTGG chr1D_958 CTTCAGCCTCGAGGACAATGAGTTGTGGCTTCGACATGTCATAACTCTGG chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------------------------------------------S- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GGTCTCAGGTCACGGTCTCCTTGTACGTCCTCTGCAAGTGGTGGTCCGGC chr6B_1_TraesCS6B01G003600 GGTCTCAGGTCACGGTCTCCTTGTACGTCCTCTGCAAGTGGTGGTCCGGC chr6B_916 TGTCTCAGGTCACCGTCTCCTTGTACGTTTTCTGCAGGTGGTGGTCCGGA chr5D_917 TATCTCAGGTCACCGTCGCCTTGTACGTCTTCTGCAAGTGGTGGTCCGGC chr5A_917 TATCTCAGGTCACCGTCGCCTTGTACGTCTTCTGCAAGTGGTGGTCCGGC chrUn_943 TGTCTCAGGTCACCGTCTCCTTGTACGTTTTCTGCAGGTGGTGGTCCGGA chr1D_958 TGTCTCAGGTCACCGTCGCTTTGTACGTCTTCTGCAAGTGGTGGTCCGGC chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs S------------S---------------S-------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CAGCAGAGATTGCTGCTGGCCGCGGTGGTGCTCTTCATCTTTGGCATCCT chr6B_1_TraesCS6B01G003600 CAGCAGAGATTGCTGCTGGCCGCGGTGGTGCTCTTCATCTTTGGCATCCT chr6B_916 GAGCAGAGGCTGCTGCAGACGGCAATCATTCTCTTCGTCTTTGGCATCCT chr5D_917 GAGTCGAGGCTGCTGCTGGCGGCAGTTATGCTCTTCGTCTTCGGCATCTT chr5A_917 GAGTTGAGGCTGCTGCTGGCGGCAGTTATGCTCTTCGTCTTTGGCATCCT chrUn_943 GAGCAGAGGCTGCTGCAGACGGCAATTATTCTCTTCGTCTTTGGCATCCT chr1D_958 GAGTTGAAGCTGCTGCTGGCGGCAGTTATGCTCTTCGTCTTTGGCATCCT chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs S-------SS----------S--S--SS--------S------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CAAGTTGATGCTTAAGCCATGGGCTCTGAGAAGAGCTAGCTATAGTCATA chr6B_1_TraesCS6B01G003600 CAAGTTGATGCTTAAGCCATGGGCTCTGAGAAGAGCTAGCTATAGTCATA chr6B_916 CAAATTTAGCATCAAGCCATGGACCCTCAGGAGAGCGAGCTATAGCCAGA chr5D_917 GAAATTTGGTCTCAAGCCATGGACTCTCAGGAGAGCTAGCTATAGTCAGA chr5A_917 GAAATTTGGTCTCAAGCCATGGACTCTCAGGAGAGCTAGCTATAGTCAGA chrUn_943 CAAATTTAGCATCAAGCCATGGACTCTCAGGAGAGCTAGCTATAGCCAGA chr1D_958 CAAATTTAGCCTCAAGCCATTGGCTCTTAGGAGAGCTAGCTATAGCCAGA chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ---S--S-SS--S--------------S--S-----------------S- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGCTGGCTTCCACCGACGTGTCCCTGCAAAGAGCAGAACAAGGAAGTAGC chr6B_1_TraesCS6B01G003600 TGCTGGCTTCCACCGACGTGTCCCTGCAAAGAGCAGAACAAGGAAGTAGC chr6B_916 TGTTGGCTTCCACCGATGTCTCCCT------------------------- chr5D_917 TGCTCGCTTCCACCGATGTGTCCCTACCAAAAGAGGGGGGG--------- chr5A_917 TGCTCGCTTCCACCGATGTGTCCCAACCAAGAGAGGGAGAA--------- chrUn_943 TGTTGGCTTCGACCGATGTCTCCCTAGGAAAAGGGGGACGA--------- chr1D_958 TGCTAGCTTCCACCGATGTATCCCTATCAAGAGAGGGAGAA--------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------------S--------S-S-----SS-S----SSSSSSSSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGTTTTGCGTGGTTGACATGCTGCACTTCCAATACCTCAACCAAGAAAGA chr6B_1_TraesCS6B01G003600 TGTTTTGCGTGGTTGACATGCTGCACTTCCAATACCTCAACCAAGAAAGA chr6B_916 -------------------------------------------------- chr5D_917 ------------------------------------------AAAAGAAG chr5A_917 ------------------------------------------AAAAGAAG chrUn_943 ------------------------------------------AAAAGAGG chr1D_958 ------------------------------------------AAGAAAGA chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 AGGCGATGGAGCAGGGGAGTGT---GCCCTTTCCCTTGATGAATATGTGC chr6B_1_TraesCS6B01G003600 AGGCGATGGAGCAGGGGAGTGT---GCCCTTTCCCTTGATGAATATGTGC chr6B_916 -------------------------------------------------- chr5D_917 TCGTGATGGAGCAACAGGGGACAGCCCCCTTTCCCTTGATGAATATGTGA chr5A_917 TCGCGATGGAGCAACAGGGGACAGCCCCCTTTCCCTTGATGAATATGTGA chrUn_943 TCGCGGGAATAAGGAAGAAGAC---GCCCTTTCCCTTGATGAATATGTGA chr1D_958 AGGCGATGGAGCAACAGGGGACAAGGCCCTTTCCCTTGATGAATATGTGC chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs --------------SS---SSS---------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GACAAGCAAAGAAGAT---------------CTGTGATCAACAAGTCGGT chr6B_1_TraesCS6B01G003600 GACAAGCAAAGAAGAT---------------CTGTGATCAACAAGTCGGT chr6B_916 -------------------------------------------------- chr5D_917 CACAAGCAAAGGCGACAATGTGCACAGCAAGCTGCGAGCAACAAGCTGCT chr5A_917 CACAAGCAAAGGCGAGCATGTGCACAGCGAGCTGCGAGCAACAAGCTGCT chrUn_943 CACAAGCAAAGGAGACGA---------TGCGTTGTGATCAAGAAGCTGAT chr1D_958 AAAAAGCAAAGGATATGATGTGCGCAGTGAGTTGTGATTCACAAGCTGCT chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs S----------S---------------------------------SS-S- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GAACCCACAGTGAAGAAGGAGGCAAAGATG-------------------- chr6B_1_TraesCS6B01G003600 GAACCCACAGTGAAGAAGGAGGCAAAGATG-------------------- chr6B_916 -------------------------------------------------- chr5D_917 AACCCGCCTACAG------------------------------------- chr5A_917 AACCCGCCTACGG------------------------------------- chrUn_943 GAACCCACAGTGAAGGATAAGGCAGCGACGAGAAGTGATGGAGATCCCGG chr1D_958 GAACCCGCCATGAAGAAGG---CAGCGACGAGCAGTGATCATGAAGCTGA chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------------------SS--S--------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------GCAATCAGATACACGGATTACTTTGTGGACCTGTCCGCTCCAT chr6B_1_TraesCS6B01G003600 -------GCAATCAGATACACGGATTACTTTGTGGACCTGTCCGCTCCAT chr6B_916 -------------------------------------------------- chr5D_917 --CAATAGCAGTCAGACACATTGATTACTTTGTGGACCTGTCCGCTCCAT chr5A_917 --CAATAGCAATCAGACACATTGATTACTTTGTGGACCTGTCCGCTCCGT chrUn_943 GCCGTTGTCAATCAACAGTATCGATTACTTTGTGGATATGTCCGCTCCGT chr1D_958 GCCGATATCAATCAGGCACATCTGTTACTTCGTGAACATGTATGTTCCGT chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------------S---SS---------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 ATAGTGGTCTGCGATGTCTCCAGAATCTGCGATGTCTCCAGAATCTGCGT chr6B_1_TraesCS6B01G003600 ATAGTGGTCTGCGATGTCTCCAGAATCTGCGATGTCTCCAGAATCTGCGT chr6B_916 -------------------------------------------------- chr5D_917 ACGGTGCTCGGCTAAGTG------ACCTGTGGTATCTCCAGAGC------ chr5A_917 ACGGTGGTCGGCTAAGTG------ACCTGTGGTATCTCCAGAGC------ chrUn_943 ACGGTGGTCGGCTAGGTG------ACCTGCGATACTTCCAGCAGAGGAAG chr1D_958 ATGTTGCTCGGCTAAGTG------ACCTGCAATATCTCCAGAATCCGCCT chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs --S------S--S-S--SSSSSSS-S-------S-----------S--S- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 ---------------------------------------AGAATCTGCGT reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CCTCCTCCTCCCCACCAAGACAAGAAAAAGAACAACAACAAGAAGAAGAA chr6B_1_TraesCS6B01G003600 CCTCCTCCTCCCCACCAAGACAAGAAAAAGAACAACAACAAGAAGAAGAA chr6B_916 -------------------------------------------------- chr5D_917 ------------------------------AACAACAAGAAGACGAGGAA chr5A_917 ------------------------------AACAACAAGAAGACGACGAA chrUn_943 AAGG---------------------------------AGACGACGACTGA chr1D_958 CCTCCTCAGAAAGATAACTTCG------------------AGATGGAGAA chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------SSSSSS-SS-SSS-SSSSSSSSS--------S----S------ forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 CCTCCTCCT----------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGCATCATACGAGATGCTGCAAAAGTGCTTTGAAGATACATTCGATCTCC chr6B_1_TraesCS6B01G003600 TGCATCATACGAGATGCTGCAAAAGTGCTTTGAAGATACATTCGATCTCC chr6B_916 -------------------------------------------------- chr5D_917 TGCATCATACAAGATGTTGCAAATGTGCTTTGATCAAATATTTGATCTCT chr5A_917 TGCATCATACAAGATGTTGCAAACGTGCTTTGATCAAATATTCGATCTCT chrUn_943 TGCATCATCCAAGATATTGCAAGCTCACTTCAGTTATATATTCTTTCTCC chr1D_958 TACACCATACAATATTTTGCAGAAGTGCTTTCACCTTATATTTGAGAAGC chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------S-----S----------------SS---S----------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGT---------------------------ACACCAGAGTGGGATTCACC chr6B_1_TraesCS6B01G003600 TGT---------------------------ACACCAGAGTGGGATTCACC chr6B_916 -------------------------------------------------- chr5D_917 TGTACACCAAAATGGGATATGTTGATGGAGACACCAATGTGGGATTCACT chr5A_917 TGTACACCAAAATGGGATATGTTGATGGAGACACCAATGTGGGATTCACT chrUn_943 TGTACAACAAAGTCAG------------------------GGCACTCAAT chr1D_958 TCT---------------------------ACAGCAGAGAGGGATACAAT chr5D_1946 --------------------------------ACCAATGTGGGATTCACT chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------S forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CGCATTGAGAGTCTGTTGGTGGTTCTGCTTCCCTTGCTGGCTTTGGCATC chr6B_1_TraesCS6B01G003600 CGCATTGAGAGTCTGTTGGTGGTTCTGCTTCCCTTGCTGGCTTTGGCATC chr6B_916 -------------------------------------------------- chr5D_917 TCTTTTGAGATTCTGTTTACGCTTTTGCTTCCATTAGTGGCCTTAGCTTC chr5A_917 TCTTTTGAGATTCTGTTTACGCTTTTGCTTCCATTAGTGGCTTTAGCTTC chrUn_943 GCCACCGCGTATCAGTTGGTGCTTTGGCTTCCATTCCTGGCTTTAGCTTC chr1D_958 ACCATTGAGGAGGTCTTGACGTTTTTGCTTCCGCTCCTGGCGGTAGCTTC chr5D_1946 TCTTTTGAGATTCTGTTTACGCTTTTGCTTCCATTAGTGGCCTTAGCTTC chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs SS--------S----------S--S-------S--S--------S--S-- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CGTGGTCCTCTTCGCCACGAGCCACAAGCTGGGCTATAGCAGCAGGGACA chr6B_1_TraesCS6B01G003600 CGTGGTCCTCTTCGCCACGAGCCACAAGCTGGGCTATAGCAGCAGGGACA chr6B_916 -------------------------------------------------- chr5D_917 CCTGACGCTCTTCGCCACAAGCGACAAGCATGGTTACAACAGCAGGGACG chr5A_917 CCTGATGCTCTTCGCCACAGGCAACAAGCATGGTTACAACAGCAAGGACG chrUn_943 TGTGGTCCTCTTCGCCACGAGCCACAAGGACGGTTACAACAGCACGGATG chr1D_958 TATGGTCCTTTTTGCCATGAGCCACAAGGACGGTTACAATAGCAGGGACG chr5D_1946 CCTGATGCTCTTCGCCACAAGCAACAAGCATGGTTACAAGAGCAGGGACG chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -----------------------------SS--S--S-S----------S forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TCAAGGTGACCTACATCCTCTTTGCTTGCACTACTATGGTCGAGTTCTTA chr6B_1_TraesCS6B01G003600 TCAAGGTGACCTACATCCTCTTTGCTTGCACTACTATGGTCGAGTTCTTA chr6B_916 -------------------------------------------------- chr5D_917 TCAAGGTGACATACATCCTTTTCTCTTGCACTACTTTGCTGGAGTTCTTA chr5A_917 TCAAGGTGACATACATCCTTTTCTCTTGCACTACTCTGCTGGAGTTCTTA chrUn_943 TCAAGGTGACATACATCCTCTTCTCTTGCACTGCTCTGCTGGAGTTCTTG chr1D_958 TCAAGGTAACATACATCCTCTTCTCTTGCACTACTATGGTCGAGTTATTG chr5D_1946 TCAAGGTGACATACATCCTTTTCTCTTGCACTACTTTGCTGGAGTTCTTA chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------S-----------SS-------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 ------------------------------------------AGTTCTTA reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CTGCCCCTGTGCGGCATTATTTTACC------------GTGTATCCCTTG chr6B_1_TraesCS6B01G003600 CTGCCCCTGTGCGGCATTATTTTACC------------GTGTATCCCTTG chr6B_916 -------------------------------------------------- chr5D_917 CAGTTATGGTGTGGTATTGTCACCAT------------GTGCATTCCTTG chr5A_917 CAGTTATGGTGTGGTATTGTCACTGC------------ATGCATTCCTTG chrUn_943 TTTCCTTTGTCGTTCCTTGTCTTACC------------ATTCATTCCTCG chr1D_958 CTACTCTTGACGGCCACTGTCTTGGGATGTGCCGTGGGGTGTATTCCGTC chr5D_1946 CAGTTATGGTGTGGTATTGTCACTGC------------GTGCATTCCTTG chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------S----S------S-S-----------------------S----- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 CTGCCCCTGTGC-------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CCTAAATTTCCTCA---------TCGACGGATGGCATGACATGGTTTCCC chr6B_1_TraesCS6B01G003600 CCTAAATTTCCTCA---------TCGACGGATGGCATGACATGGTTTCCC chr6B_916 -------------------------------------------------- chr5D_917 CCTGAGATTCATCAACGAGTATCTCGAGGGATGGCATGACATGGTTTCTC chr5A_917 CCTGAAATTCATCAACGAGTATCTCGAGGGATGGCATGACATGGTTTCCC chrUn_943 CCTAAGATTTCTCGTCATGTATATGGAAGAATGGCATTTCATGATTTCCC chr1D_958 CCTAGAATTCCTCTATCATTACATCAACGGATGGCATGACATGGTTTCGC chr5D_1946 CCTGAAATTCATCAACGAGTATCTCGAGGGATGGCATGACATGGTTTCCC chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------S------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 AGTACAACCTCATGTCGTTCTATGTTCGCAAGAAGAAACCCACCTTCCTG chr6B_1_TraesCS6B01G003600 AGTACAACCTCATGTCGTTCTATGTTCGCAAGAAGAAACCCACCTTCCTG chr6B_916 -------------------------------------------------- chr5D_917 AGTACGACCTCATGTCGTTCTATGTTCGCAAGAAGAAACCCACCTTCCTG chr5A_917 AGTACGACCTCATGTCGTTCTATGTTCGCAAGAAGAAACCCACCTTCTTG chrUn_943 AGTACGATCTCATGTCCTTCTATGTTCGCAAGAAGAAACCCACCTTCCTC chr1D_958 AGTATGACCTCATGTCGTTTTATGTTCGCAAGAAGAGACCCACCTTCCTG chr5D_1946 AGTACGACCTCATGTCGTTCTATGTTCGCAAGAAGAAACCCACCTTCCTG chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -----S-------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 ATGAAGCTCGCTTTCTTCCAAGGTCTAAGGGACTATGTTAGCAAGGTTTG chr6B_1_TraesCS6B01G003600 ATGAAGCTCGCTTTCTTCCAAGGTCTAAGGGACTATGTTAGCAAGGTTTG chr6B_916 -------------------------------------------------- chr5D_917 ATGAAGATCTCTTATTTCGAATGTCTAATGGGGTATGTTATCAAGGTTTG chr5A_917 ATGAAGATCTTTTTCTTCAAATGTCTAAGGGGGTATGTTAGCAAGGTTTG chrUn_943 ATGAATATTGTTTTCTTCAAATGTCTAAGGGAGTATGTTAACAAGGTTTG chr1D_958 ATGAAGCTGGTTCTCTTTGAATGTCTAAGGGAGTACGTTAGCAAGGTTTG chr5D_1946 ATGAAGATCTTTTTCTTCGAATGTCTAATGGGGTATGTTAGCAAGGTTTG chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------------S--S----------S----------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GTATATAAGGCAGGTACCCGCTGCCTGCCAGATCACGGAGCTGATTCAAG chr6B_1_TraesCS6B01G003600 GTATATAAGGCAGGTACCCGCTGCCTGCCAGATCACGGAGCTGATTCAAG chr6B_916 -------------------------------------------------- chr5D_917 GTATGTAAGGCAGGTGCCTGCAGCCTACGAAATTATGGAGCTAGTTCAAC chr5A_917 GTATGTAAGGCAAGTGCCTGCAGCCTACGAAATTACGGAGCTAGTTCAAC chrUn_943 GTATGTAAGGCACGTGTCTGCAGCTTGCGAGATTACAGAGCTGGTTCAAC chr1D_958 GTATGTAAGGCAGGTGCCTGCAGCCCGTGAAATTACAGAGCTGGTTCAAC chr5D_1946 GTATGTAAGGAAGGTGCCTGCAGCCTACGAAATTACGGAGCTAGTTCAAC chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----S----------S--S--S------S----S---------S-----S forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GACACAT---AGAAGACGGATGGAAGACGTCCATAAGTGATGCCGTGGGA chr6B_1_TraesCS6B01G003600 GACACAT---AGAAGACGGATGGAAGACGTCCATAAGTGATGCCGTGGGA chr6B_916 -------------------------------------------------- chr5D_917 GGCACATAGAAGAAGATGGATGGAAGACGTTCATAACTGATGCTGCCACC chr5A_917 GGCACAT---AGAAGATGGATGGAGGACATTCATAACTGATGCCGCCACC chrUn_943 TACACAT---AGAAGATGGATGGAAGACGTTCATAAATGATGCCTCCACG chr1D_958 AGCACAT---AGAAGATGGATGGAAGAAGTTCATAAGTGATGCCACCACA chr5D_1946 GGCACATAGAAGAAGATGGATGGAAGACGTTCATAACTGGA--------- chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------------S-------------S--------------SSSS- forward_870 -------------------------------------------------- reverse_2497 ----------------------------------------------GGGA forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TACAGGAGGTTCAGCGATCTTAGAGGCGAGCTGGCTCTAAAGAAGTACC- chr6B_1_TraesCS6B01G003600 TACAGGAGGTTCAGCGATCTTAGAGGCGAGCTGGCTCTAAAGAAGTACC- chr6B_916 -------------------------------------------------- chr5D_917 TACAGGAGATTCAGCGATTTCAGGGGCCAACTGACTCTGGAGAGGTTCAG chr5A_917 TACAGGAGGTTCAGCGATTTCAGGGGCCAGCTGACTCTGGAGAGGTCCAG chrUn_943 TACAGGAGGTTCAGCGACTTAAGGGGCCAGCTGACTCTGAAGAAG---C- chr1D_958 TATAAAAGGTTTGGCAACTTCAGGGGCCAGCTGACTCTGAGCAGGCTCAG chr5D_1946 -----GAGGTTCAGCGATTTCAGGGGCCAGCTGACTCTGGAGAGGTTCAG chr5B_2468 -------------------------------------------------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------------S-S--S---S-----S----S-------S--- forward_870 -------------------------------------------------- reverse_2497 TACAGGAGGTTCAGCG---------------------------------- forward_896 -------------------------------------------------- reverse_2521 --------------------TAGAGGCGAGCTGGCTCTAA---------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 --AACATAAGC------TTGGCCTTGGACACAAGGCATTGTGGGATAGTT chr6B_1_TraesCS6B01G003600 --AACATAAGC------TTGGCCTTGGACACAAGGCATTGTGGGATAGTT chr6B_916 -------------------------------------------------- chr5D_917 TGAAGCACCAACAGGGAGTGTACTTGGAG---AGGAGTTGTGGGATAGCT chr5A_917 TGAAGCACCAACAGGGGGTGGCCTTGGAG---AGGAGTTGTGGGATAGCT chrUn_943 --ACCAACAGC------CTGGCCTTGGAG---AGGAGTTGTGGGGTAGCT chr1D_958 CGACCAACAGT------GTGACCTTGGAG---AGGAGTTGTCGGGTAGCT chr5D_1946 TGAAGCACCAATAGGGAGTATACTTGGAG---AGGAGTTGTGGGATAGCT chr5B_2468 -------------------------------------TTGTGGGATAGCT chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------SS---------S----------SSSS---SS-----------S- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TGATTGTGCCCTTGGACAAGAGTGTCCTTCCTTGGCACATCGCCACAAAC chr6B_1_TraesCS6B01G003600 TGATTGTGCCCTTGGACAAGAGTGTCCTTCCTTGGCACATCGCCACAAAC chr6B_916 -------------------------------------------------- chr5D_917 TGAAGGTGCCATTCGACAGGAGTATCATCCTTTGGCACATCGCCACAAAT chr5A_917 TGAAGGTGCCATTCGACAGGAGTATCCTTCTTTGGCACATCGCCACAAAT chrUn_943 TCAAGGTGCCATTCGACAAGAGTATCCTTCTTTGGCACATCGCCACGAAT chr1D_958 TGGAGGTACCATTCGACAAGAGTATCCTTCTTTGGCACATCGCCACAAAC chr5D_1946 TGAAGGTGCCACTCGACAGGAGTATCATTCTTTGGCACATCGCCACAAAT chr5B_2468 TGAAGGTGCCATTCGACAGGAGTATCCTTCTTTGGCACATCGCCACAAAT chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ---SS-----S--S---------S------S------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CTCTGCTTTCACAGCCCAGAGGCCAAGGTATCCTCCTCCCCTCGAGGACA chr6B_1_TraesCS6B01G003600 CTCTGCTTTCACAGCCCAGAGGCCAAGGTATCCTCCTCCCCTCGAGGACA chr6B_916 -------------------------------------------------- chr5D_917 CTCTGCTTTCACCGGCCCGTGGACAAGCCATCATCCTTCCCTCGAGGACG chr5A_917 CTCTGCTTTCACCGGCCCGTGGACAAGCCATCATCCTTCCCTCGAGGACA chrUn_943 CTTTGCTTTCACCGCTCTGTGGACAAGCCATCATCCTTCCCTCGAGGACA chr1D_958 CTCTACTTTCACCGGCCTGTGGACAAGCCATCATCCTCCGTCCGAAGTCA chr5D_1946 CTCTGCTTTCACCGGCCCGTGGACAAGCCACCATCCTTCCCTCGAGGACG chr5B_2468 CTCTGCTTTCACCGGCCCGTGGACAAGCCATCATCCTTCCCTCGAGGACA chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------S----S-S--S----SS---S----------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GAGACAGACCAATCT---TAGTAGGAACATGTCTGACTATATGTTGTACC chr6B_1_TraesCS6B01G003600 GAGACAGACCAATCT---TAGTAGGAACATGTCTGACTATATGTTGTACC chr6B_916 -------------------------------------------------- chr5D_917 AAGTGGCCTTACGCAACGTAGTATGGAGATGTGCGACTACATGTTATACC chr5A_917 AAGTGACCTTACGCAACGCTGTATGGAGATGTCCGACTACATGTTATACC chrUn_943 AAGCCGTCTTACACGACGCAGTTTGGAGATGTCCGACTACATGTTTTACT chr1D_958 ACGCGTTCTTACAAAACGCAGTATGGAGATGTCCAACTACATGTTATACC chr5D_1946 AAGTGGCCTTACGCAACGTAGTATGGAGATGTCCGACTACATGTTATACC chr5B_2468 AAGTGACATTACGCAACGCAGTATGGAGATGTCCGACTACATGTTATACC chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs S--S--S-SS-SS-S--------S-S-S-----S-----S-----S---- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TACTTTCGACCCATGCTGAGATGTTGTTGCCCGGCACCAGACCGGGTCTC chr6B_1_TraesCS6B01G003600 TACTTTCGACCCATGCTGAGATGTTGTTGCCCGGCACCAGACCGGGTCTC chr6B_916 -------------------------------------------------- chr5D_917 TGCTTTTCATCCGCACCGAGATGTTGTCGCCCGGCACCAGACCGGGTCTC chr5A_917 TGCTTTTCATTCGCACCGAGATGCTGTCGCCCGGCACCAGACCGGGTCTC chrUn_943 TGCTTTTCATCCGTACTGAGATGCTATTGCCCGGCACCAGACCGGGTCTC chr1D_958 TGCTATTCATCCGCACCGAGATGTTGTTGCCCGGCACCAGACCGGGGCTC chr5D_1946 TGCTTTTCATCCGCACCGAGATGTTGACGCCCGGCACCAGACCGGGTCTC chr5B_2468 TGCTTTTCATCCGCACCGAGATGTTGTCGCCCGGCACCAGACCGGGTCTC chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -S----SS-S--S-S----------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TTCACCGTCGCCACATATGATCTAGACGACATCTTGAAGAACAGCGAGGC chr6B_1_TraesCS6B01G003600 TTCACCGTCGCCACATATGATCTAGACGACATCTTGAAGAACAGCGAGGC chr6B_916 -------------------------------------------------- chr5D_917 TTCACCGTCGCCATATATGATCTAGAGGAAATCTTGAAGAACAGCAAGGC chr5A_917 TTCACCGTCGCCATATATGATCTAGAGGAAATCTTGAAGAACAACAAGGC chrUn_943 TCCACCGTCGCGGTATATGATCTAGAGGACATCTTGAAGAACAGCAATGC chr1D_958 TTCTCTGTCGCCGTATATAAGCTAGAGGACATCTTGAAGAACAGCAAGGA chr5D_1946 TTCACCGTCGCCATATATGATCTAGAGGAAATCTTGAAGAACAGCAAGGC chr5B_2468 TTCACCGTCGCCATAGATGATCTAGAGGAAATCTTGAAGAACAGCAAGGC chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------S------------S------------------S---- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 AAAGCTCGAGAATGAAGAAGCAATTGCTCGAGAGATTCTTAAGCACAAGA chr6B_1_TraesCS6B01G003600 AAAGCTCGAGAATGAAGAAGCAATTGCTCGAGAGATTCTTAAGCACAAGA chr6B_916 -------------------------------------------------- chr5D_917 AAAGCTCCAGGATGAAGAAGCACTTGCTCAAGAGATTATTCAACAGACGG chr5A_917 AAAGCTCCAGGATGAAGAAGCACTTGCTCAAGAGATTATTCAACAGACGG chrUn_943 AAATGTCGAGGATGAAGAAGCACTTGCTCAAGAGATAGTTAAACACACAA chr1D_958 AAACCTGGAGAATGAAGAAGCACTTGCTCAAGAGATCATTAAACACACGG chr5D_1946 AAAGCTCCAGGATGAAGAAGCACTTGCTCAAGAGATTATTCAACAGACGG chr5B_2468 AGAGCTCCAGGATGAAGAAGCACTTGCTCAAGAGATTATTCAACAGACGG chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------------------S------S-------S----S----S-- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 ACGGTAGTACTGTGATTCATCAAGCGTGCGGGCTCGCCGAGTCACTGATG chr6B_1_TraesCS6B01G003600 ACGGTAGTACTGTGATTCATCAAGCGTGCGGGCTCGCCGAGTCACTGATG chr6B_916 -------------------------------------------------- chr5D_917 TCGGGAGTACTCTGATTCACAAAGCTTGCAGGCTCGCTATGTCATTGATG chr5A_917 CCGGGACTACTCTGATTCACAAAGCTTGCAGGCTGGCTATGTCATTGATG chrUn_943 CCGGGGATACCCTGATTCATGAAGCTTGCAGGCTTGCTGTGTCACTAATG chr1D_958 ATGGGAGGACTCTGATCCATGAAGCTTGCAGGCTCGCTGTGTCACTGATG chr5D_1946 CTGGGAGTACTCTGATTCACAAAGCTTGCAGGCTCGCTATGTCATTGATG chr5B_2468 CCGGGGGTACTCTGATTCACAAAGCTTGCAGGCTCGCCATGTCATTGATG chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----S------S--------S----S---S---------S---------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -----------GTGATTCATCAAGCGTGCGG------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GAGCTGCGTGAAGAGGACAAGTGGGCGATAATACAGGGCGTGTGGGTCGA chr6B_1_TraesCS6B01G003600 GAGCTGCGTGAAGAGGACAAGTGGGCGATAATACAGGGCGTGTGGGTCGA chr6B_916 -------------------------------------------------- chr5D_917 GACCTGCAGGAAGAGGAGATGTGGGAGATAATCCAGGGCGTGTGGGTGGA chr5A_917 GACCTGCAGGAAGAGGAGATGTGGGAGATAATCCAGGGCGTGTGGGTGGA chrUn_943 AAGCTGCAGGAAGAGGAGATGTGGCAGATAATCCAGGGCATGTGGGTGGA chr1D_958 AAGCTGGACGAAGAGGAGATGTGGCAGACAATCCAGGGCGTGTGGGTGGA chr5D_1946 GACCTGCAGGAAGAGGAGATGTGGGAGATAATCCAGGGCGTGTGGGTGGA chr5B_2468 GGCCTGCAGGAAGAGGAGATGTGGGAGATGATCCAGGGCGTGTGGGTGGA chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------SS--------S-S-----S------S--------------S-- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GATGCTCTGCTACTCCGCAAGTAGATGCAGAGGTTTCCTGCATGCCAAGA chr6B_1_TraesCS6B01G003600 GATGCTCTGCTACTCCGCAAGTAGATGCAGAGGTTTCCTGCATGCCAAGA chr6B_916 -------------------------------------------------- chr5D_917 GATGCTCTGCTACTCTGCGAGTAGATGCAGAGGATTCCTGCACGCCAAGA chr5A_917 GATGCTCTGCTACTCTGCTAGTAGATGCAGAGGATTCCTGCACGCCAAGA chrUn_943 GATGCTCTGCTACTTGGCTAGTAGAAGCAGAGGGTTCCTGCACCCCAAGA chr1D_958 GATGCTCTGCTACTCTGCTAGTAGATGTAGAGGCTTGCTGCACGCCAAGA chr5D_1946 GATGCTCTGCTACTCTGCGAGTAGATGCAGAGGATTCCTGCACGCCAAGA chr5B_2468 GATGCTCTGCTACTCTGCTAGTAGATGCAGAGGATTCCTGCACGCCAAGA chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ---------------S--S--------------S--------S------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GCCTGGGTGCAGGCGGGGAGTACCTCTCCTATGTCTGGCTCCTCTGGTCA chr6B_1_TraesCS6B01G003600 GCCTGGGTGCAGGCGGGGAGTACCTCTCCTATGTCTGGCTCCTCTGGTCA chr6B_916 -------------------------------------------------- chr5D_917 GCCTGGGTGAAGGCGGGGAATACCTCTCCTATGTGTGGCTCCTCTGGTCA chr5A_917 GCCTGGGTGAAGGCGGGGAATACCTCTCCTATGTGTGGCTCCTCTGGTCA chrUn_943 GCCTGGGTGAAGGCGGGGAATACCTCTCCTATGTCTGGCTCCTTTGGTCA chr1D_958 GCCTGGGTGAAGATGGGGAATACCTCTCCTATGTTTGGCTGCTATGGTCA chr5D_1946 GCCTGGGTGAAGGCGGGGAATACCTCTCCTATGTGTGGCTCCTCTGGTCA chr5B_2468 GCCTGGGTGAAGGCGGGGAATACCTCTCCTATGTGTGGCTCCTCTGGTCA chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ---------S---------S------------------------------ forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 TACATGGGGATGCAGACCTTGGCAGACAAGATCCAAAAGCCTGAGTCTCC chr6B_1_TraesCS6B01G003600 TACATGGGGATGCAGACCTTGGCAGACAAGATCCAAAAGCCTGAGTCTCC chr6B_916 -------------------------------------------------- chr5D_917 TACATGGGGATGGAGACATTGGCGGACAAGATTCACAAGCCCGAGTCTCC chr5A_917 TACATGGGGATGGAGACCTTGGCGGACAAGATTCACAAGCCCGAGTCTCC chrUn_943 TGCATGGGGATGCAGACCTTGGCAGACAAGATCCACAAGCCCGAATCTCC chr1D_958 TACATGGGGATGGAGACCTTGGCGGACAAGCTCCAAAAGCCTGAGTCTCC chr5D_1946 TACATGGGGATGGAGACATTGGCGGACAGGATTCACAAGCCCGAGTCTCC chr5B_2468 TACATGGGGATGGAGACCTTGGCGGACAAGATTCACAAGCCCGAGTCTCC chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 --------------------------------CCAAAAGCCTGAGTCTCC reverse_4414 -------------------------------------------------- input_sequence_34201 GTCAGAAAAGGAAATCCTTGCTGCGGCCCATGAATTGCCTTCTCCATGTC chr6B_1_TraesCS6B01G003600 GTCAGAAAAGGAAATCCTTGCTGCGGCCCATGAATTGCCTTCTCCATGTC chr6B_916 -------------------------------------------------- chr5D_917 GAAAGAAAAGGAGATCCTTGTTGAGGACGATGAATTGGCTTCT------- chr5A_917 GAAAGAAAAGGAGATCCTTGTTGAGGACGATGATTTGGCTTCT------- chrUn_943 GGAAGAAAAAGAGATCCTTGCCACGGCCAAAGAATGGGCTTCTCCAT--- chr1D_958 GACACAAAAAGAGATCATTACTTTGGCCAACGAATTGACTTCT------- chr5D_1946 AAAAGAAAATGAGATCCTTGTTGAGGACCATGAATTGGCTTCT------- chr5B_2468 GAAAGAAAAGGAGATCCTTGTTGAGGAAGATGAATTGGCTTCT------- chr1B_3081 -------------------------------------------------- chr6A_3081 -------------------------------------------------- chr5D_3081 -------------------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -S----------S------------------------S---------SSS forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------CCTTCTCCATGTC forward_3152 GT------------------------------------------------ reverse_4414 -------------------------------------------------- input_sequence_34201 AGAGCGCGTCCGTGCGACACGACCACCTCGCGTGCAGCCGTGCAGGACTG chr6B_1_TraesCS6B01G003600 AGAGCGCGTCCGTGCGACACGACCACCTCGCGTGCAGCCGTGCAGGACTG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 ---GCGTGTCCGTGCAACACGACCACCTCG--------CGTGTAGGAGTG chr6A_3081 ---GCGCGTCCGTGCAACACGACCACCTCG--------CGTGCAGGAGTG chr5D_3081 ---GCGCGTCCGTGCAACACGACCACCTCG--------CGTGCAGGAGTG chr7A_3081 ---GCGCATCCATGCAACACGACCTCCTCG--------CGTGCAGGAGTG chr1B_3116 --------------------------------------CGTGCAGGAGTG SNPs SSS------------S--------------SSSSSSSS---------S-- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 AGAGCGC------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 GGAGGCG-CCAGATCCGGGCCAACGCCGCCGCGCGATCCCAAGAGCTCTG chr6B_1_TraesCS6B01G003600 GGAGGCG-CCAGATCCGGGCCAACGCCGCCGCGCGATCCCAAGAGCTCTG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 GGAGGCG-CCAGATCCGGGCCAACTCCGCCGTGCGATCCCAAGAGCTTTG chr6A_3081 GGAGGCG-CCAGATCCGGGCCAACGCCGCCGCGCGATCCCAAGAGCTCTG chr5D_3081 GGAGGCG-CCAGATCCGGGCCAACGCCGCCGCGCGATCCCAAGAGCTCTG chr7A_3081 GGGGACGCCCAGATCCGGGTCAACGCCGCCGCGTGATCCCAAGTGCTCCG chr1B_3116 GGGGACGCCCAGATCCGGGCCAACGCTGCTGTGTGATTCCAGGTGCTCCG SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 ACCAACGGAAGCAGCCGCGGGACCCTTCACTCCGGTCCCATGTC---CAT chr6B_1_TraesCS6B01G003600 ACCAACGGAAGCAGCCGCGGGACCCTTCACTCCGGTCCCATGTC---CAT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 ACCAACGGAAGCAGCCGCGGGACCCTTCACTCCGGTCCCATGTC---CAT chr6A_3081 ACCAACGGAAGCAGCCGCGGGACCCTTCACTCCGGTCCCATTT-GTCCGT chr5D_3081 ACCAACGGAAGCAGCCGCGGGACCCTTCACTCCGGTCCCA--T-GTCCGT chr7A_3081 ACCAACGGAACCAGCCGCGGGACCCTTCACTC-GGTCACA--T-GTCCGT chr1B_3116 ACCAAAGGAAGCAGCCGCGGGACCCTTCACTCTGGTCCCATGTCGTCTGT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CGCCGAGGTTGG-GTTGGGGTGGACAGAAGGGAGGGCGGTCGAC------ chr6B_1_TraesCS6B01G003600 CGCCGAGGTTGG-GTTGGGGTGGACAGAAGGGAGGGCGGTCGAC------ chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 CGCCGAGCTTGG-GTTAGGGTGGACAGAAGGGAGGGCGGTCGAT------ chr6A_3081 CGCCGAGCTTGG-TTTGGGGTGGACAGAAGGGAGGGCGGTCGAC------ chr5D_3081 CGCCGAGCTTGG-GTTGGGGTGG-------------CGGTCGAC------ chr7A_3081 CGCCGAGCTTGG-TTGGGGTGGG-------------CGGAAGGGAGGACG chr1B_3116 GGCCGAGCTTGGGTTTGGGTGGA-------------CGGAAGGGAGGACG SNPs -------S------------------------------------------ forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 --------------GGGCGAACTGGGGATTGGGGATGAACTGCTA----- chr6B_1_TraesCS6B01G003600 --------------GGGCGAACTGGGGATTGGGGATGAACTGCTA----- chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 --------------GGGCGAACTGGGGATTGTGGATGAACTGCTA----- chr6A_3081 --------------GGGCGAACTGGGGATTGGGGACGAACTGCTA----- chr5D_3081 --------------GGGCGAACTGGGGATTGGGGATGAACTGCTA----- chr7A_3081 GCTGACGGACGAAC------------------GGGCGAACTGTTGACATT chr1B_3116 GCCGAGGGACGAGAGGGCGAACTAGGGATTGGGGACGAACTGTTGACATT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 CGC-------TGGCAACTGCTCCAGTTCTCGTA----CACGGACCGAACA chr6B_1_TraesCS6B01G003600 CGC-------TGGCAACTGCTCCAGTTCTCGTA----CACGGACCGAACA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 CGC-------CGGCAACTGCTCCATTTCTCGTA----CACGGACTGAACA chr6A_3081 CGC-------CAGCAACTGCTCCAGTTCTCGTA----CACTGACC----- chr5D_3081 CGCCGGCAAGTGGCAACTGCTCCAGTTCTCGTA----CACGGGCC----- chr7A_3081 CGC-------CGGCAACGACTCCAGTTCTCGTA----TACGAACAA---- chr1B_3116 CGC-------CGGCAACGGCTCCAGTTCTCATATATATACGAACAAAATA SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 G-----AGGTAA-------------------------------------- chr6B_1_TraesCS6B01G003600 G-----AGGTAATATTTTCCCCAATACGTGCTT----CTCGCACCATC-- chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 G-----AGGTAAGATTTTCCCCAATACGTGCTT----CTCGCACCATC-- chr6A_3081 G-----AGGTAAGATTTTCCCCAATACGTGCTG----CTCGCATCATC-- chr5D_3081 GAACAAAGGTAAGATTTTCCCCAATACGTGCTTCTTTCTCGCACCATC-- chr7A_3081 -AACAGAGGTAATATTTCCCCCAATACGTGCTTCTCACACCTTCG-TC-- chr1B_3116 G-----AAGTAAGATTTTCCCCAATACGTGGTT----CTCACACCATCGT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 -ACACATTTGGTTATTGCCCAGAGACAAAACAATGATTCTGGCGTACTGT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -ACACATTTGGTTATTGCCCAGAGACAAAACAATGATTCTGGCATACTGT chr6A_3081 -ACACATTTGGTTATTGCCCAGAGACAAAACAATTATTCTGGCGTACTGT chr5D_3081 -ACACATTTGGTTATTGCCCAGCAGAGACAA------------------- chr7A_3081 -ACACATTTGGTTATTGCCCAGAGACAAAACAATGATCCAGGCGTACTGT chr1B_3116 CACTCATTTTATTATTGCCCAGAGACAAAACAATGATCCTGGCGTACTGT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TGTGGGTGCCT-CAAAATCAAAACTAGGGATTCAGGAGTAGGTTAGTCGC chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TGTGGGTGCCT-CAAAATCAAAACTAGGGATTCAGGAGTAGGTTAGTCGC chr6A_3081 TGTGGGTGCCT-CAAAATCAAAACTAGGGATTCAAGAGTAGGTTAGTCGC chr5D_3081 --------CCT-CAAAATCAAAACTAGGGATTCAAGAGTAGGTTAGTCGC chr7A_3081 ---GGGTGCCTACAAAATCGAAGCAAGGGATTC-AGAGTAGGTTAGTTGC chr1B_3116 ---GGGTGCCTACAAAATCGAAACAAGGGATTCAGGAGTAGCTTAGTTGC SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 AATATTCAGTATTTTCAGTCATGACTTTTCCTTACGCGAGTTT-GAT--- chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 AATATTCAGTATTTTCAGCCATGACTTTTCCTTACGCGAGTTT-GAT--- chr6A_3081 AATATTCAGTATTTTCAGCGATG-CTTTTGCTTACGCGAGTTT-GGT--- chr5D_3081 AATATTCAGTATTTTCAGCCATGACTTTTCCTTACGCGAGTTTGGTTGTT chr7A_3081 AAGATTCAGTAGTTCCAGCGATGACTTTGCCTTACGCGCGTTTGGAT--- chr1B_3116 AAATCTCAGTAATTTCAGCGATGACTTTGCCTTACGCCCGTTCGGAT--- SNPs ------------------S------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 -TTGGTCTGGCTCACTCACGGAGGTGGTGAGGGGTTGAATTGGGTGTTGT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 -TTGGTCTGGCTCAGTCACGGAGGTGGTGAGGGGTTGAATTGGGTGTTGT chr6A_3081 -TTGGTCTGGCTCACTCACGGAGGTGGTGAGGGGTTGAATTGAGTGTTGT chr5D_3081 GTTGGTCTGGCTCACTCACGGAGGTGGTGAGGGGTTGAATTGGGCGTTGT chr7A_3081 -TTGGTCTGGATCACTCACGGAGGTGGTGAGGGGTTGAATTGGGTGTTGT chr1B_3116 -TTGGTCTTGCTCACTCACGGAGGTGGTGAGGGGTTGAATTGGGTGTTGT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 ACATGATGCTCTGATTGATGAATGAGCCTACCAATTTT-TTCTGCAAAAT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 ACATGATGCTCTAATTGATGAATGAGCCTACCAATTTT-TTCTGCAAAAC chr6A_3081 ACATGATGCTCTGATTGATGAATGAGCCTACCATTTTT-TTCTGCAAAAT chr5D_3081 ACATGATGCTCTGATTGATGAATGAGCCTACCAATTTT-TTCTGCAAAAT chr7A_3081 ACATTGCGCTCTAATTGATTACTGAAACTACCAATTTT-TTCTGCAAAAT chr1B_3116 ACATTGTGCTCTGATTGGTTCCCGAAACTACCAAAAAAATTCTGCAAAAT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CTGCTCACCATGATCCCTAGTTCTTGCTTTCAGCATGAA---TCATGCCT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 CTGCTCACCATGATCCCTAGTTCTTGCTTTCAGCATGAA---TCATGCCT chr6A_3081 CTGCTCACCATGATCCCTAGTTCTTGCTTTCAGCATGAA---TCATGCCT chr5D_3081 CTGCTCACCATGATCCCTAGTTCTTGCTTTCAGCATGAAAAATCATGCCT chr7A_3081 CTGCTCACCATGATCCCTAGTTCTTGCTTTC------------------- chr1B_3116 CTGCTCACCATGATCCCTAGTTCTTGCTTTCAGCATGAA---TCATGCCT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 ACAGGTTTAAGGCGGCTGTACGAGACAGTACAATGCCGGCATATCTTCAT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 ACAGGTTTAAGGCGGTTGTACGAGACAGTACAATGCCGGCATATCTTCAT chr6A_3081 ACAGGTTTAAGGCGGCTGTACGAGACAGTACAATGCCGGCATATCTTCAT chr5D_3081 ACAGGTTTAAGGCGGCTGTACGAGACAGTACAATGCCGGCATATCTTCAT chr7A_3081 -------------------------------------------------- chr1B_3116 ACAGGTCTAAGGTGGCTATACAACACAGTACAACGGC--CATATCTTCAT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 CCTGCGGCAAGTTGGCTCATAGAGCCTATTTTTTGTCTATTCATTAGTGC chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 CCTACGGCAAGTTGGCTCATAGAGCCTATTTCTTGTCTATTCATTAGTGC chr6A_3081 CCTGTGGCAAGTTGGCTCATAGAGCCTA-TTTTTGTCTATTCATTAGTGC chr5D_3081 CCTGCGGCAAGTTGGCTCATAGAGCCTATTTTTTGTCTATTCATTAGTGC chr7A_3081 -------------------------------------------------- chr1B_3116 CGTAGGGCAAGTTTGCTCATAAAGCCTATTTTTTGTCTATTCCTTAGTGC SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TTGGCTAATTCAATGTTTAATTCTAGTCGCTTACAACCACAT-ATGAACT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TTGGCTAATTCAATGTTTAATTCTAGTCGCTTACAACCACAT-ATGAACT chr6A_3081 TTGGCTAATTCGATGTTTAATTCTAGTCGCTTACAACCACAT-ATGAACT chr5D_3081 TTCGCTAATTCAATGTTTAATTCTAGTCGCTTACAACCACATTATGAACT chr7A_3081 -------------------------------------------------- chr1B_3116 TTGGCTAATTCAATGTTCAATTCTAGTCACTTACAACCACAT-ATGAACT SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 T---AAAATCATGGTTATTTTT---TTTG-TAATAAGCGACATATGCAAA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 T---AAAATCATGGTTAATTTT---TTTG-TAATAACCGACATATGAAAA chr6A_3081 T---AAAATCATTGTTAATTTT---TTTG-TAATATGCGACATATGCAAA chr5D_3081 TAAAAAAATCATGGTTAATTTTTTTTTTG-TAATAAGCGACATATGCAAA chr7A_3081 -------------------------------------------------- chr1B_3116 T---AAAATCATGGTTAATTTT---TTTGGTAAGAAGCAACAGATGCAAA SNPs -----------------S-------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TTCATATGGATTATCCAGCATATTTTTGTACAGAGATGGTTGATGTTTGC chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TTCATATGGATTATCCGACATATTTTTGTACAGAGATGGTTGATGTTTGC chr6A_3081 TTCATATGGATTATCCGGCATATTTTTGTACAGAGATGGTTGATGTTTGC chr5D_3081 TTCATATGGATTATCCGGCATATTTTTGTACAGAGATGGTTGATGTTTGC chr7A_3081 -------------------------------------------------- chr1B_3116 TTCATATGGATTATCCGGCATATTTTTGTACATAGATGGTT--------- SNPs ----------------S--------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TTACTGCACACTTCGTAGTATTTTCTTTGCTTGTCTGGTACAAGATGCAT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TTACTGCACACTTCGTAGTATTTTCTTTTCTTGTCTGGTAAAAGATGCAT chr6A_3081 TTACTGCACACTTTGTAGTATTTTCTTTTCTTGTCTGGTACAAGATGCAT chr5D_3081 TTACTGCACACTTCCTAGTATTTTCTTTTCTTGTCTGGTACAAGATGCAT chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ----------------------------S--------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GCTGCCTAAACTGCAACCACTAGTTGCCTAGGGATAAATAAAGAAGTTGT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 GCTGCCTAAACTACAACCACTAGTTGCCTAGGGATAAAGAAAGAAGTTGT chr6A_3081 GCTTCCTAAACTGCAACCACTAGTTGCCTAGGGATGAAGAAAGAAGTTGT chr5D_3081 GCTGCCTAAACTGCAACCACTAGTTGCCTAGGGATAAAGAAAGAAGTTGT chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs --------------------------------------S----------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TTCGGGTAAACTTCAC-ACCATTTTGTTGTCTAGGGGATATCGATGAAGT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TTCGGGTAAACTTCAC-ACCATTTTGTTGTCTAGGGGATATCGATGAAGT chr6A_3081 TTCGGGTAAACTTCAC-ACCATTTTGTTGTCTAGGGGATATCGATGAAGT chr5D_3081 TTCGGGTAAACTTCACCACCATTTTGTTGTCTAGGGGATATCGATGAAGT chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GGCTAAATGATAACCACTGGTTGCCCGAGAGAAGTGGTAACTTGCCTTAG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 GGCTAAATGATAACCACTGGTTGCCCGAGAGAAGTGGTAACTTGCCTTAG chr6A_3081 GGCTAAATGATAACCTATAG---------------------TTGCCTTAG chr5D_3081 GGCTAAATGATAACCACTAGTTGCCCGAGAGAAGTGGTAACTTGCCTTAG chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TCATTGTCAGCGGTCGAGGAATTGGGCCTCAAATCGCCGGTAAGCGTCAT chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TCATTGTCAGCGGTCGAGGAATTGGTCCTCAAATCGCCGGTAAGCATCAT chr6A_3081 TCATTGTCAGCGGTCGAGGAATTGGGCCTCAAATCGCTGGTAAGCGTCAT chr5D_3081 TCATTGTCAGCGGTCGAGGAATTGGGCCTCAAATCGCCGGTAAGCGTCAT chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 TGATTCCCTCACACATGCATTTTATTCCACTCAAATCAAGGTCAGATTGG chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 TGATTCCCTCACACATGCATTTTATTCCACTCAAATCAAGGTCAGATAGG chr6A_3081 TGATTCCCTCACACATGCATTTTATTCCACTCAAATCAAGGTCAAATTGG chr5D_3081 TGATTCCCTCACACATGCATTTTATTCCACTCAAATCAAGGTCAGATTGG chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 ACCGAGGGGATGTGGGGGCATGTTGATTTCAGGGGAGGTGAGGTGGGGGA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 ACCGAGGGGATGTTGGGGCATGTTGATTTCAGGGGGGTG--GGTGGGGGA chr6A_3081 ACCGAGGGGAT--------------------------------------- chr5D_3081 ACCGAGGGGAT--------------------------------------- chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------S---------------------S-SSSS--------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------GGGGGCATGTTGATTTCAGG----------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GGTGGGGG----------------------------------------CA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 GGTGGGGG----------------------------------------CA chr6A_3081 -GTGGGGG----------------------------------------CA chr5D_3081 -GTGGGGGCATGTTGATTTCAGGGGGGGTGGGGTGGGGGAGGTGGGGGCA chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs -------------------------------------------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 -------------------------------------------------- chr6B_1_TraesCS6B01G003600 GTTTTCATGTGTGCATGTGGTCGTGGGTATGTGGCCAACGGCGAGGCGCA chr6B_916 -------------------------------------------------- chr5D_917 -------------------------------------------------- chr5A_917 -------------------------------------------------- chrUn_943 -------------------------------------------------- chr1D_958 -------------------------------------------------- chr5D_1946 -------------------------------------------------- chr5B_2468 -------------------------------------------------- chr1B_3081 GTTTTCATGTGTGCATGTGGTCGTGG-TATGTGGCCGACGACGAGGCGCA chr6A_3081 GTTTTCATGTGTGCATGTGGTCGTGGGTATGTGGCCGACGGCGAGGCGCA chr5D_3081 GTTTTCATGTGTGCATGTGGTCGTGGGTATGTGGCCGACGGCGAGGCGCA chr7A_3081 -------------------------------------------------- chr1B_3116 -------------------------------------------------- SNPs ------------------------------------S------------- forward_870 -------------------------------------------------- reverse_2497 -------------------------------------------------- forward_896 -------------------------------------------------- reverse_2521 -------------------------------------------------- forward_1909 -------------------------------------------------- reverse_2912 -------------------------------------------------- forward_2212 -------------------------------------------------- reverse_3188 -------------------------------------------------- forward_3152 -------------------------------------------------- reverse_4414 -------------------------------------------------- input_sequence_34201 ---------------------------- chr6B_1_TraesCS6B01G003600 CACGGTGTAGTATCTCACGATAGATCTC chr6B_916 ---------------------------- chr5D_917 ---------------------------- chr5A_917 ---------------------------- chrUn_943 ---------------------------- chr1D_958 ---------------------------- chr5D_1946 ---------------------------- chr5B_2468 ---------------------------- chr1B_3081 CACGGTGTAGTATCTCATGATAGATCTC chr6A_3081 AACGGTGTAGTATCTCACGATAGATCTC chr5D_3081 CACGGTGTAGTATCTCACGATAGATCTC chr7A_3081 ---------------------------- chr1B_3116 ---------------------------- SNPs ---------------------------- forward_870 ---------------------------- reverse_2497 ---------------------------- forward_896 ---------------------------- reverse_2521 ---------------------------- forward_1909 ---------------------------- reverse_2912 ---------------------------- forward_2212 ---------------------------- reverse_3188 ---------------------------- forward_3152 ---------------------------- reverse_4414 ----------------------------