>input_sequence_34113
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----------------------------------------------------------GCGCGCCTGTACACGCCATTTC
CCATCACTCGTCGTCGTCATCCTCAGCGCTCTCCTGTCGCTCCAGTG----------TTCTTGACCTGAGAGATGGACGC
GGGGAGCGCCG------TCGAGGCGGGGCGGCAGGAGGGGACT---------------CCCACGGGGCCCGCGGCGCCGT
TCGGCAGGTCGTCGTCGTCGTCGGGTCTCGGCGCGAAGGGCGGCGCGACACCCCAGAGCTTCGACGGCGCGCTCAGAGTT
GAGCGCTTCTCTTGGCCCTTTTTTCCCAATCATTTTCGCGTCGCGTGCGCCGCTCTGATTAAAGCTTGCGTGTCG----T
CCGACGCGTTCGCTCGGGTTTGCAGGAGCTCAAGGATCTGCAGTCGCAGCTGCACCAGGCGGCGGACTGCTGCGAGAAGG
CGTTCCTCAACACCGAGAAGAAGCAGCTGTAAGCGCAGACACTCCCATCGTTTATCTCACTCCAGCACATTTTCTTTCTT
TCTTTCCCTGTCTGGTCGTGGAA-CTGATGGCCGCGTGTAAGTTTCGTTTCATTTCCTGCGCATGGTGGTGAAGAATCCT
GGACAGTACAAAGAGCTACATCTGCGACGCGGTAGTAGCGGTGATCGATCATCTGGGGACCGTCTCATCCAAGCTTGAGC
ACCAGCTGGAGGACAAGGCTGAGATCACGCAAACAGAGCAAAAGATCAGCTTCCTCAAGCAGGTTGTGCATTCTCTCCAC
TTGTAGCTGTGAATAAATTATGTATGGATATCTGGTGCAATTACCAGAAACAGTTTGGATTAAACAATGAGCCATATCTA
TGACACCGTGATGGAGATTAGGCAGGATTGTAACTTGCGAGAGTACATATACAGTGCTTTTTAAAGGGTGATATACAGTG
CTTTTTGAAGGGTGATGTACAGTGCTTTTTGCTCCTAGATAACTTGGGTGCTCT----------TTGGGAATTCTTCTCT
GTTCCAGTTTTAGCAAGTCAATATCAATATGCACCACATGTTTTCTCATGGCGATTGACTTACAAAGCTTCAGCGTCACT
GCTGAGTGGTGATGAACATCGACCAAGCCAAACCCTGCTATGCTCACTGAACTTTGTATGA-TCTCTTGATGTTACCAGA
GGCTCTTGACATGCGAACAGTATGCAATTTCCCTCCAACTATTGGCCGTTCGTGCGGACACTGGCGCCGTTCAATATCAT
CGCCGTTACCTCTCGCAATGTATAGTTTTCAAACTTTGTTCGACTTATATGATGAACATGCAAAATGCTTCAGCTCTGCT
ATGATTTACTGACTAGTTCCAATTTCCACTACAGCTACTGAAAGAAACAACCAGGAAAATGTTGCCAAGTCAAGGTTTAC
TGGCTACTTGTTACTTTC-GATTCTTTCGCTCTGTCTTTCTTTGTACCTGTGGTCTGCAATTTGTATCCCTGTATATATA
ACATTAGCAGCATTTTTTCACACAGCAGAGGTGACCCAGAA---CCCTTCAAGCTCAATAGCACAGTGGCGCCAGGAGCT
ACTCGCACTCTGAAGCCATATGATGTTGAATCAACCATGGGTAA-TTTTTTTGCCAGATGAAATATATTATGAACAATTG
T---GTATTTGGCACCGTAAAGCTGTTCTGCTTCCAT-CTACTGTGAAGAAGGATCCCAGCCATTCTA-CTGATCAAAAT
TTCCCTTTCTATGC------------------------------------------------------------------
-----AACATTTTTTAGCATGCCTTCAGTTTGTTTTCCTGGATCCACTCGTAACAACAGCAAGTTGTTCCCACTTGTTTT
AACCCTTTT-TTTTCATATAGCCGTGATTGATTTACCGTATGGCTAATGACATGGTGATCTTATTAGGGAGGGAGCATGC
CGTGGCGGGTGCAGACGTTGGAAACCCAGCATCCATAACGAGGTCATTTTCCTTCAGAGCAGAGGTATTCCTAAGTTATA
CGTGTCATATATTGTCTCAGAAATATGTGCTCTAGACACTATTTATACCAAGAAATCAACACGACATTGCCAAGTGTGTA
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---------------------------------------------AACTATTCAGTGATGCACGAAGCAACGCAAGCACA
GACATGTGTTTATTTTTTACCTTGATGCA----------TTTTCCTCTGAATTTTATGCAGGATGTTCAAATTGCTGCAG
GGGGTCATCACAAGAAGAAGAAGAAAAGTAGCCATGGCAGCAACATCATGTCATTTCTCAAAAGAAGCAAGCGACATGCG
TAACGGTGAAAAGAGCCACCGGGGTGCAGTTAGAATGTGGCTATCGCCAGAGTTTTTGCTAGCCATCAGAATGTCCATTG
TTCTGTAAAAGGAATGTGCGTACAGTACATATGTTTGAGTTCTGCTCCGGTGCACGCATGTGCTGACGTGCAGTAAATTG
AAATTCAGGGTCGAGCTGAAACATTCATGCC-------------------------------------------------
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-----------------------------------------------------------------------
>chr3D_1_TraesCS3D01G296800
AGGCAGAGGGGAAATTTTACTAAATGTGGCCCTTCGTCCCTCACCATATGCCTTGATTGATGAGATTTCAGATTTGAGCT
CTATAAACCAGAAAGGAGGGAGTACATTCATAGTGGGTAGTAACATAAGCGTGGTGTCATGCAAAGATTTATTTATTAGG
TTATAGACTCATATTGCATTGGGACATGTGATGTTACAGTAACTAGTTAAGTTACCCAAACTACCTCTCTCCGCATTAAC
GCATTGCCATATAAGCAAATTTGCTGAATTGGACTCGATGTTACTGCTGAACTTAGACTAGCCACAATGGTTAGTAACAT
AGACTAGTAACATGCTATAGTGGAGAGTAACATTTGTGTGGTAACATGCAACAATTCATTTATTAGCCTATAGACTCATT
CTGCCTTGATATGTGTGATGTTACTCATATTACTAGTACCTACTCTCTTGTAGACTAGTCACAGTGGGAGTAAGACTCCA
TCTTCTCGGAGTAGCTATATTACCACTTTTCTCTCTTTCTTCATTTATTGTTTGCCACATCATCTATTTTATCTAAATAT
GAATGATGTTACTACCTATGTTACTTCCACTATGAAGTCTTAGTCCCACTGTGGCTAGTCTACAAGAAGGCGACGACTTT
CTTGGGTTGGAGGACGATTCACTTCACCCCGTATCCACGGGATGTTCACCGATTTGCGTTACAGTCGGCAGTATAAACGA
CCAAAGAAACACCGGACCCTCGTTAAAACCGACGA----CGACGCAGCCGTAGGCTCGACGCCAAACTTTCTCCGAAACA
CTGCACCTTGAGAATCTCCTCGAAAGGGACGCCACAAGAACCCGGGCGTACGCTTCGCCCGTGACGAGCGCAGCGCACGC
TAGCGCGCCGTCCAAGCGCTCGGCGCCTCTGACCCGGAG--AGCCACCCC---------ATCACGAGACCGCCTGCCGCG
CCTTGTCCCGTTGCTCTT-GCCCCCTGCGTTCTCCTGCGCTCCGAACGCCACTTT--CGCGCGCCTGTACACGCCATTTC
CCATCACTCGTCGTCGTCATCCTCAGCGCTCTCCTGTCGCTCCAGTG----------TTCTTGACCTGAGAGATGGACGC
GGGGAGCGCCG------TCGAGGCGGGGCGGCAGGAGGGGACT---------------CCCACGGGGCCCGCGGCGCCGT
TCGGCAGGTCGTCGTCGTCGTCGGGTCTCGGCGCGAAGGGCGGCGCGACACCCCAGAGCTTCGACGGCGCGCTCAGAGTT
GAGCGCTTCTCTTGGCCCTTTTTTCCCAATCATTTTCGCGTCGCGTGCGCCGCTCTGATTAAAGCTTGCGTGTCG----T
CCGACGCGTTCGCTCGGGTTTGCAGGAGCTCAAGGATCTGCAGTCGCAGCTGCACCAGGCGGCGGACTGCTGCGAGAAGG
CGTTCCTCAACACCGAGAAGAAGCAGCTGTAAGCGCAGACACTCCCATCGTTTATCTCACTCCAGCACATTTTCTTTCTT
TCTTTCCCTGTCTGGTCGTGGAA-CTGATGGCCGCGTGTAAGTTTCGTTTCATTTCCTGCGCATGGTGGTGAAGAATCCT
GGACAGTACAAAGAGCTACATCTGCGACGCGGTAGTAGCGGTGATCGATCATCTGGGGACCGTCTCATCCAAGCTTGAGC
ACCAGCTGGAGGACAAGGCTGAGATCACGCAAACAGAGCAAAAGATCAGCTTCCTCAAGCAGGTTGTGCATTCTCTCCAC
TTGTAGCTGTGAATAAATTATGTATGGATATCTGGTGCAATTACCAGAAACAGTTTGGATTAAACAATGAGCCATATCTA
TGACACCGTGATGGAGATTAGGCAGGATTGTAACTTGCGAGAGTACATATACAGTGCTTTTTAAAGGGTGATATACAGTG
CTTTTTGAAGGGTGATGTACAGTGCTTTTTGCTCCTAGATAACTTGGGTGCTCT----------TTGGGAATTCTTCTCT
GTTCCAGTTTTAGCAAGTCAATATCAATATGCACCACATGTTTTCTCATGGCGATTGACTTACAAAGCTTCAGCGTCACT
GCTGAGTGGTGATGAACATCGACCAAGCCAAACCCTGCTATGCTCACTGAACTTTGTATGA-TCTCTTGATGTTACCAGA
GGCTCTTGACATGCGAACAGTATGCAATTTCCCTCCAACTATTGGCCGTTCGTGCGGACACTGGCGCCGTTCAATATCAT
CGCCGTTACCTCTCGCAATGTATAGTTTTCAAACTTTGTTCGACTTATATGATGAACATGCAAAATGCTTCAGCTCTGCT
ATGATTTACTGACTAGTTCCAATTTCCACTACAGCTACTGAAAGAAACAACCAGGAAAATGTTGCCAAGTCAAGGTTTAC
TGGCTACTTGTTACTTTC-GATTCTTTCGCTCTGTCTTTCTTTGTACCTGTGGTCTGCAATTTGTATCCCTGTATATATA
ACATTAGCAGCATTTTTTCACACAGCAGAGGTGACCCAGAA---CCCTTCAAGCTCAATAGCACAGTGGCGCCAGGAGCT
ACTCGCACTCTGAAGCCATATGATGTTGAATCAACCATGGGTAA-TTTTTTTGCCAGATGAAATATATTATGAACAATTG
T---GTATTTGGCACCGTAAAGCTGTTCTGCTTCCAT-CTACTGTGAAGAAGGATCCCAGCCATTCTA-CTGATCAAAAT
TTCCCTTTCTATGC------------------------------------------------------------------
-----AACATTTTTTAGCATGCCTTCAGTTTGTTTTCCTGGATCCACTCGTAACAACAGCAAGTTGTTCCCACTTGTTTT
AACCCTTTT-TTTTCATATAGCCGTGATTGATTTACCGTATGGCTAATGACATGGTGATCTTATTAGGGAGGGAGCATGC
CGTGGCGGGTGCAGACGTTGGAAACCCAGCATCCATAACGAGGTCATTTTCCTTCAGAGCAGAGGTATTCCTAAGTTATA
CGTGTCATATATTGTCTCAGAAATATGTGCTCTAGACACTATTTATACCAAGAAATCAACACGACATTGCCAAGTGTGTA
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---------------------------------------------AACTATTCAGTGATGCACGAAGCAACGCAAGCACA
GACATGTGTTTATTTTTTACCTTGATGCA----------TTTTCCTCTGAATTTTATGCAGGATGTTCAAATTGCTGCAG
GGGGTCATCACAAGAAGAAGAAGAAAAGTAGCCATGGCAGCAACATCATGTCATTTCTCAAAAGAAGCAAGCGACATGCG
TAACGGTGAAAAGAGCCACCGGGGTGCAGTTAGAATGTGGCTATCGCCAGAGTTTTTGCTAGCCATCAGAATGTCCATTG
TTCTGTAAAAGGAATGTGCGTACAGTACATATGTTTGAGTTCTGCTCCGGTGCACGCATGTGCTGACGTGCAGTAAATTG
AAATTCAGGGTCGAGCTGAAACATTCATGCCACATCGAGGAGAAACAAGCATGTTCATTTCATTTTCGGTCCCAAGATTT
TATACTATACTACTCCCTCCAGAATTACTTGTCGCAGAAATTGATAAAAAATGATTGTATCAAGAGCTAAAACATGTCTA
GATACATCCAAATAATTCCAGACGGAGCTAAAGAGAAGTAACATATGACTGATATTTTAGCAAATACACATAGAATAATT
ATTGAGGTGGAAGAGGAAGACGAGAAAAGAGATTTCTATTTCTTTAGCTAGGAAGATGACTTCTTAATAAGAAGCTAAAA
TACCTTTTTTTAAATAGTTTTCCCCATTGTATGGGACATATTCTCCTAATCACAAATATTTTAAATTAGTTTTAATCATC
TCATACTTGTAGGAGCATGCTGCATGCAAACATTTTATTGCTCTAAATATCGGTGTCCTCAGCTTGCTAAATTCCCTCAA
GTCCTATTAGACTTGGCACACGTGGTTGCAATTTCTTGGAATTATATTTCAGGCTTTCTATTCTTTTGTCGGTATTGCAT
ATTGTTCATAGGCGCGTGTGTATGTGAACATCCATGTGTCTCAGGGTGTCGAGGCCAGAGTACATAGAAGGACGAAGCGT
TTTTCTCTCGGGAGGGGCGACTCCCAGGGCGACTTAGGTCTCCGCTGGTCCGCTGCCGGCCGCCTCCCCGGCGGCGGCGC
GGGGGCCAGTGTTCTTTGTCCCAGGATGGTGCCAGAAGGTGTAGTTGCTGGTTTTATTGTCTCAGGATGCTGCCATGAGG
TGTCGTCACTGGTTTTATTGTCCCGGGACGCTGACGTGAGGTGCCGCCGCTGGTTTCTCTCTATACTATGAGTTCTGTTG
TCTTACTGCTGGATTCCGTGGAGTATCTCAAGCAAGAAATTTTGAGGTCTCGTGAAGGAAGGTGTGCTCCAATCCTCCTC
AGATTGGATGCGTTTTTGAAGTAGTGGTGGTGTTGTGGGTACGTGATTGTTGGACGTGATTGTTTCACCTA
>chr3B_621
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------------------------------------------------------------TACAAGAAGGCGACGACTTC
CTTGGGTTGGAGGACGATTCACTTCACCCCGTATCCACGGGATGTTCACCGATTTCCGTTACAGTCGGCAG--TAAACGA
CCAAACAAACACCGGACCCTCGTTAAAACCGACGAC-GACGCCGCAGCCGTAGGCTCGACGCCAAACTTTTTCAGAAACA
CTGCACGTTCAGAATCTCCTCGAAAGGGACGCCACAAGAACCCGGGCGTACGCTTCGCCCGTGACGAGCGCCGCACACGC
TAGCGCGCCGTCCAAGCGCTCGGCGCCTCTGACCCGGAG--CGCCACCCC---------ATCACGGGACCGCCTGCCGCG
CCTTGTCCCGTTGCTCTTTGCTCCCTACGTTTTCCTGCGCCCCGAACGCCACTTTCGCGCGCGCCTGTACACGCCATTTC
CCATCACTCATCGCCGTCATCCTCAGCGCTGTACTGCCGCTCCCGTG----------TTCTTGACCTGAGAGATGGATGC
GGGGAGCGCCG------GCGAGGCGGGACGGCAGGAGGGGACT---------------CCGATGGGCCCCGCGGCGCCGT
TTGGCAGGTCGTCGTCGTCGTCGGGTCTCGGCGCGAAGGGCGGCGCAGCACCCCAGAGCTTCGACGGCGCGCTCAGAGTT
GAGTGGTTC-----------TTTTCCCAACCATAC-CGCGTCAAGTGCGCGCCTCTGATTAGTGCTTGCGGGTCGGACGT
CCGACGCGTTCGTTGGGGTTTGCAGGAGCTCAAGGATCTGCAGTCCCAGCTGCACCAGGCGGCGGACTGCTGCGAGAAGG
CGTTCCTCGCCACCGAGAAGAAGCAGCTGTAAGCGCAGACACTCCCATCGATTCTCTCACTCCAACACATTTTCTTTATT
TTCCTCCCG---TGGTCGTGGAA-TTGATGGCCGCGTGTAAC-----TTTCATTTCCTGCGCGTGGTGGTGAAGAATCCT
GGACAGTACAAAGAGCTACATCTGCAACGCGGTAGTAGCGGTGATTGATCATCTGGGGACCGTTTCATCCAAGCTTGAGC
ACCAGCTGGAAGACAAGGCTGAGATCACGCAAACAGAGCAAAAGATCAACTTCCTGAAGCAGGTTGGGTGTTCTCTCCAC
TTGTAGCTATAAAAAAATTATGTATGGATATCTGGTGTAGTTACCAGAAATAGTTTGGATTAAACAATGAACCATATCTA
TGATGATAAAGT------AG-------TTGAAACTTCAGAGGGTACACACTG--------GTTTTC--------------
------------------------------------AGATAACTTGGATGCTCTTTTCGTTGGCTTGGGAATTCCTCTCT
GCTCTAATTTAG---------------TATGCACCACTTGTTTCCTCATTCCGATTGACTTACAAAG-TTGAGCTTGACT
GCTGAGTGGTGATGAACTTCGACCAAGCGAAACCCTGCTATGCTCACTGAACTTTGTATGA-TCTCTTGATGTTACCAGA
GGCTCTTGACATGCGAACACTATGCAATTTCTCTCCAACTATTGGCCGTTCGTGCGGACACTGGCGCCGTTCAATATCAT
CGCCGTTATCTTTCGCAATGTACAGTTTTCAAACCGACTTG------TATGATGAACATGCAAAATGCTTCAGCTCTGCT
ATGATTTACTAACTAGTACTACTTTTCACTACAGCTTCTGAAAGAAACAACGAGGAAAATGTCGCCAAGTCAAGGTTCAC
TCGCTACTAGTTACTTTTAGATTCTTTCGCTTTGTCTTCCTTTGTACCTGTGGTCTACAATTTGTATCACTGTATG----
ACATTAGCAGCATTTTTTCACACAGCAGAGGTGGCCCAGAA---CCCTTCAAGCTCAATAGCGCAGTGGCGCCAGGATCT
ACTCGCACTCTGAAGCCATATGATGCTGAATCAACCATCGGTAAATTTTATTGCGACATGAAACATAGTATGAACAATTG
T---GTATTTGGCACCGTAAAGATATTCTGCTTCCATGCTACTGTGAAGAAGGATCCCAATCATTATAGCTGATCAAAAT
TTCCCTTTTTATGTACTCCTTCCGATCCAAAATAAGTGTCG-GGTTTTAGTTCAAATTCGACACTGTTTTTGGATCAGAG
GGAGTAACATTTTTTAGCATCCCTTCAACTACTAATAAC----------------ACAGCAAGTTGTTCCCACTTTTTTA
AAGCTTACTCTTTTCATATCGCCATGATTGATTTACCATATGGCTAATGACATGGTGATCTTATTAGGGAGGGAGCATGC
CGTGGCGGGTTCAGACGTTGGAAACCCAGCATCCATAGCGAGGTCATTTTCCTTCAGAGCAGAGGTATTCCTATGTTATA
TTA---TA---------CAGAAATATTTGCTGTAGACACTATCTACACCAAGAAATCAACACGACATTGCCAAGTGTGTA
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---------------------------------------------AGCTATTCAGTGATGCA------------------
------TGCTTCTTTTTTACCTTGATGCATAAGATTTTTTTTTCCTCTGAATTTTATGCAGGATGTTCACGTTGCTGCAG
GGGGTCACCACAAGAAGAAGAAGAAAGGCAGCCATGGCAGCAACATCATGTCATTTCTCAAAAGAAGCAAGCGACATGGG
TAAAGCCACC-----------GGGTGCAGTTAGAATGTGGCTATCACCAGAGTTTTTGCCAGCCATCCGAATGTCCATTG
TTCTGTAACAGGAATGTATGCATG-----TATGTTTGAGTTCTGCTCCGGTGCACACATGTGCAGACGTGCAGTAAATTG
AAATTCAGGGTCGAGCTGAAACATTCATGCCACATCGGGGAGAAACACTCATGTTCATTTTATTTTCTGTCTGAAGAGTT
CATACTAT------------------------------------------------------------------------
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-----------------------------------------------------------------------
>chr3A_714
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-------------------------------------------------------------------------TAAACGA
CCAAAGAAACACCAGACCCTCGTTAAAACCGACGACGGACGACGCAGCCGTAGGCTCGACGCCAAACTTTCTCCGAATTA
CTGCACCTTCAGAATCTCCTCGAAAGGGACGCCGCAAGAACCCGGGCGTACGCTTCGCCCGTGACGAGCGCGGCGCACGC
TAGCGCGCCGTCCAAGCGCTCGGCGCCTCTGACCCGGAGCGCGCCACCCCAACAGAGGGATCACGAGACGGCCTGCCGCG
CCTTGTCCCGTTGCTCTT-GCTCCCTACGTTCTCCTGCGCCCCGAACGCCACTTTCGCGCGCGTCTGCACACGCCATTTC
CCATCACTCATCGTCGTCATCCTCAGCGCTCTTCTGTCGCTCCCGTGCCCGTCGTTGTTCTTGGCGTGCGAGATGGACGC
GGGGAGCGCCGGCGACGGCGAGGCGGGGCGGCAGGAGGGGACGCCTCCCTCCGGCGCGCCGACGGGCCCCGCGGCGCCGT
TCGGCAGGTCGTCGTCGTCGTCGGGTCTCGGCGCGAAGGGCGGCGCAGCACCCCAGAGCTTCGACGGCGCGCTCAGAGTT
GAGTGGTTC-----------TTCTCCCAACCATCC-CGCGTCAAGTGCGCGCCTCTGATTAAAGCTTGCGTGTCG----T
CCGGCGCGTTCGCTCGGGTTTGCAGGAGCTCAAGGATCTGCAGTCGCAGTTGCACCAGGCGGCGGACTGCTGCGAGAAGG
CGTTCCTCGCCACCGAGGAGAAGAGGCTGTGAGCGCAG-CACTTCCATCGATTCTCTCACTTCAATACATTTTCTGTCT-
----TCCCTGTTTGGTGGTGGAATTTGATGGCAGCGTGTAAC-----TTTCATTTCCTGCGCATGGTGGTGAAGAATCCT
GGACAGTACAAAGAGCTACATCTGCAACGCGGTAGTGGCAGTGATTGATCATCTGGGGACCGTTTCATCCAAGCTTGAGC
ACCAGCTGGAGGACAAGACTGAGATCATGCAAACAGAGCAGAAGATCAGCTTCCTGAAGCAGGTTGGGTATTCTCTCCAC
TTGTAGCTGTAAACAAATTATGTGA--ATATCTGGTGTAGTTACCAGAAACAGTTTGGATTAAACACTGAGCCATATCTA
TGATGATGATAAAGTAACAG-------TTGAAAGTTGAGAGGGTACATGCACACTGGTTAGTTTTC--------------
------------------------------------AGATACTTTGGGTGCTCTTT-----GGCTTGGGAATTCGTCTCT
GTTCTAATTTAG---------------TATGCACCACTTGTTTCCTTATTCCGGTTGACTTACATAG-TTGAGCTTGACT
GTTGATATCGAC---------------CGAAACCCTGCTATGCTCACTGAACTTTTGTTTGCTCTCTTGATGTTACCAGA
GGCTCTTGACATGCGAACAGTATGCAATTTCTCTCCAACTATTGGCCGTTCGTGCGGACGCTGGCGCCGTTCAATATCAT
CGCCGTTACCTTTCCCAATGTACAGTTTTCAAACTTTT---GACTTATATGATGAACATGCAAAATGCTTCAGCTCTGCT
ATGATTTACTGACTAGTTACACTTTCCACTACAGCTACTGAAAGAAACAACCAGGAAAATGTTGCCAAGTCAAGGTTTAT
TCGCTACCTGTTAC-TTTAGATTCTTTCACTCTTTCTTTCTTTGTACCTGTGGTCTGCAATTTGTATCACTGTATG----
ACATTAGCAGCG--TTTCCACACAGCAGAGATGACCCAGAAGAACCCCTCAAGCTCAATAGCACAGTGGCGCCAGGAGCT
ACTCGCACTCTGAAGCCATATGATGCTGAATCAACCATCGGTAAAAAAAATTGCGACATGAAACATATTATGAGCAATTG
TGGAGTATTTGGCACCGTAAAGCTATTCTGCTTCCATGCTACTATGAAGAAGGATCCCAATCATTATAGCTGATCAAAAT
T-CCCCCTTTATATACTCCCTTCGATTCAAAATGAGTGTCGTGGTTTTAGTTCAAATTCGACACTTTTTTTGGATCAGAG
GGAGTAACATTTTTTAGCATCCCTTCAACTACTAATAAC----------------ATAGCAAGTTGTTCCCACTTGTTTT
AAGCTTACTCTTTTCATATCGCCATGATTGATTTACCGTGTGGCTAATGCCATGGTGATCTTATTAGGGAGGGAGCATGC
CGTGGCGGGTGCAGACGGTGGAAACCCAGCATCCACAGCGAGGTCATTTTCCTTCAGAGCAGAGGTATTCCTATATTATA
CCATACTA---------CAGAAATATGTGCTGTAGACAC-ATCTACACCAAGAAATCAACACGACATTGCCAAGTGTGTA
AGCTATTCAGTTTTTTTTTGAAAAATCACCGGAGGGGGAGCTCCCCACCTGAATATATTTCTCAATGTTTGTAACCCATC
GTTCGACTGATTACAAGGTGAAATTACATAGGCATGTGTAATCGTGATAAGAGGTAGGAACGCCATGAGGAGGCGGCCTG
TTTTTGCTCTGTTTTCTTCATCCTGTGTGTCCAGAGCATGAGATCATCAATGATTCTCTTAAAGGTGAGGGTACTGTGGT
GGTTTTGCTGCTTGAAGGTCATAGCATTTCTCGAGTCCCAGATCTTCCATAGAATAATGAGGAGGATTTTTTTTTCAAAA
AGGGAGTTTACCCCAGCCTCTGCATCAGAAAGATGCATACGGCTCATATTATTAAAAAGATAATCCAGTAACAAAGTCTC
CAAAGGTCGTAGTGCGAAAATAAACAAAAGCTCAAAAGAGCTAAGACCCAAAGCCACAACCGGCTGGCAAATACAATAGG
AGCACTACATGCCTATCCTATTACATGACCGCCATCCAAACCGGTTGAAAATATCCCGAGCTACCATCTCCCATCAGGTA
GACGCAGTAACCAAACGCTCCCTGGCCTCCGTCGGAGTGAGTAGCGACCACATACGGATGAACGCCGTGGCCCTGAAGAT
AACCTGCAAAAGGTGAATGTTTGTTGATCTGTTAAAGACTAAATCATTTCTGCAGTTCCATACTGCCCAAAATAAAGCAC
AAACGCCAACACGAATGTGTCTTGCAGTATCAGAATCAACCCCATCAAGCCATGTTCCAAATAACATGTTGATAGAGGTG
GGTTGATTAATATTAAACGCAACATGAATCGACCGCCACAGAATCTTAGCCAACGGACAATCGAGAAAGAGGTGTTTGAT
ATTTTCGTTATGATCGCAAAAACTACACCTAGACGAGCCCACTCAGTTGCGTTGGAGTGCCAGATGGCCGCATCTAGCTG
AGAGAGGAGACGACAGTCCCAAAGATCGTCAACGGTGGCCGAGGGGCGAATGCCAATCCGTTGCCATATCCGTTGCGCGA
GTGGGCAGTCGATGAATATGTGCGAGCGTGTCTCACCATTGAACCCGCAACGTGGACATAGTGAGTCAGCGACCATGTGC
TTGCGGAGTAGGTTGCTTTTGGAGTTGAGTCGATCTCGGAACAGCAGCCATGCAAAGATCTTCACCTGGTTGGAACGCAT
GAAGACCATATTGGAATGGCATGCACGTCATTGACCGAGGCGTCGGCCATGGTGAGCGTGTAGGCGGCCCTGGTAGAGAA
ACACAGGCCACCATTTAGGTAGCGCTCGTCTGGCCCAGGCGACACCTGAAAATCCTGCAGGAGAGACAGCACAAAACACA
ACTCGGCAGAAGCATTAGAGGTTAGGTGGTTCCGTAGGATTGAATCTAAACCGTAGTTAAAAACAGTAGCCACACGAGCT
AGGGGTAGAGTGGTGTGAGAGTAAAGGCAGGGGAATAATGTAGCGAGAGGTTTGTGGTGAATCCATGCTCTAGCCAGAAA
TAAGTGTTTGTGCCAGAGTGGGTTAGAACAAAGGAGATGGCATGGAGCACCGGAAGTTGCTGGTTTATAGTGCGGCCGAT
GAAGGAATGGCTGTTTTGTGGGGCGATAAGAGCATTGGGGTGTTGCAAGGCGATCCAGTCGAGCCAAGGCGTTTTATCCG
GGAGTAGAGCTTTTACCGCGAATTTCATTAGCAAACAGTTGTTCTACTTATACAAGTTTTTTAGGCCTAGACCACCACAG
TTTTTTGGTTTACACACATTTTTCCAGGCAACTAAGCATTGAGCAAGCTATTCAGTGATGCA------------------
------TGCTTCTTTTTTACCTTGATGCATAAGAA--TTTTTTCCTCTGAATTTTATGCAGGATGTTCACGTTGCTGCAG
GGGGTCATCAC---AAGAAGAAGAAAGGCAGCCATGGCAGCAACATCATGTCATTTCTCAAAAGAAGCAAGCGACATGCG
TAACGGTGAAAAGAGCCAT-------------------------------AGTTTTTGCCAGCCATCCGAATGTCCATTG
TTCTGTAACAGGAATGTATAC---------ATGTTTGAGTTCTGCTCCGGTGCACGCATGTGCAGACGTGCAGTCAATTG
AAATTCAGGGTCGAGCTGAAACATTCATTCCGCATCGAGGAGAAGCACGCATGTTCATTTCATTTCCAGTCTCAAGGTTT
TATACTAT------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S
-------------------------------------------------------S---------------SS-------
--------------------------------------------------------------------------------
---------S-------------------------------------------------------------S--------
-----------------------------------------S--------------------------------------
---------------------S----S-------------S---------------------------------------
---------S----------------------S----------S------------------------------------
-----------------S------------------------------------------S-----S-------------
----------------------------------------------SS--------------------------------
---S-S---SSSSSSSSSSS---------S---SSS------SS------SS----------------------------
--------------------------------------------------------------------------------
--------SS----------------------------------------S--S----------S---------------
-SSS-------S------------S----------------SSSSSS---------------------------------
-------------------------S-------------------S-----------------S----------------
-------------------------------------------------------S----------S-S-----------
----------S--S-----------------------S-S----------------------------------------
---SSSS-SS--S-SS-SSSSSSSSSS---S------S---S-------S---S--S--SS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------S-----
----S-S---SSSSSSSSSSSSSSSSS----------S-----S-----SS----------------S--S---S-S---
-----------------S----------S---------------------------------------------------
-------------------------------S------------------------------------------------
-----------S----------S--------------S--S---------------------------------------
---------------------S----------------------------------------------------------
-S---------------S--------------------------------------------------S------SSSSS
--------------------------------------------------------------------------------
-------------------------S------------S----------S----S-S------S----------------
------------------------S----------------------------------SS----S--------------
--------S----S------------------------------------------------------------------
--------------------S------SS-SS-SS-SSSSSSSSSSSSSSSSSSS-------------------------
--S-S-SS-----------S---S--------------------------------------------------------
-------------------------------------S-----------------------------------S------
-SSSS-SSSSSSSSSSS--------------S----------S--S----------------------------------
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----------------------------------------------S---------------SSSSSSSSSSSSSSSSSS
SSSSSS--S--S---------------------------------------------------------SS---------
--------------------------S-S---------------------------------------------------
------------------SSS------------------------S-------------S-------S------------
--------S--------SS-S-SSSSSSS----------------------------------S----------------
-----------------------------------------------S-------------------S---S--------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_40
--------------------TAAATGTGGCCCTTCGTCCC----------------------------------------
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>reverse_1073
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--------------------------------CCTGTCGCTCCAGTGTTCTT----------------------------
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>forward_234
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------------------------------------------------------CCCAAACTACCTCTCTCCGC------
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>reverse_1450
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---------ACACCGAGAAGAAGCAGCTG---------------------------------------------------
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>forward_242
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--------------------------------------------------------------ACCTCTCTCCGCATTAAC
GC------------------------------------------------------------------------------
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>reverse_1522
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-CTTTCCCTGTCTGGTCGTGG-----------------------------------------------------------
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>forward_243
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---------------------------------------------------------------CCTCTCTCCGCATTAAC
GCA-----------------------------------------------------------------------------
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>reverse_2098
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-----------------ATCGACCAAGCCAAACCCTG-------------------------------------------
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>forward_1566
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--------------------------GATGGCCGCGTGTAAGTTTC----------------------------------
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>reverse_5067
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--------------------------AGTAGCCATGGCAGCAACAT----------------------------------
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>forward_4963
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---------------------------------------------------------------GAAGCAACGCAAGCACA
GAC-----------------------------------------------------------------------------
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>reverse_6208
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-----------------------------------------------TCTCGTGAAGGAAGGTGTGC-------------
-----------------------------------------------------------------------
