>input_sequence_33571
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------------ATGATGGCGGGGCGGGTCTTGGTTGCCATTGCGGTTCTTGCGGCGGCGGCGGCG---CTGTTTGTTGC
GGCGGAGGCCCAGCAGGCGCCGGCGCAGCAGGGCCACCAGACAGAGAGGATCTCAGGTGAGGGCAGGGCCTTGTCTTGAC
TATTGACTTGATACCCATAATCTTTGTCAGTTGTTTTTTTCGAATTAAGGGGTTTCCCC-CCAATCTTGTCAGTTTGTGC
AACTCGAACTGCTTGATTTCTCTAGC-TGTTTCGTCTCCTGCATCTAGGACGCTGCTAAAGACAGCATTTTTGGCATCCT
ATATCAGGGAATTTTCATATTTGATTGCTTGTGGTTAGACTTCCCCAGCCTGAATTCTCAGGTCCCTGTTCAGAATCAGA
TGCAACTGGATTATACAGAGAGGTTGAATGGGGTAGTTTCTATTGGCGTTCCACCTCCAAATTATTTGTCTAGTTTTTGG
TTCAATTCAACCTA--GTATCTTTTATTGAACATCCAGATGATATTAGC---------------------------ACCT
CAGTTCATGTTGTCAAGACATGCACCTTGCTTAGGGCAATCATGATTCATGCCATTTAGCATAGA----GTATTAGAGTT
AGACCTTGCTTAATATACAATCCTTTCAATCAAAGTGCTATGTGACCCTGTTATCAAGCTTGGTATATTCTTTGCTCTGC
TTTTGGGCAACACTCATAGATGTCTTCTGGTCAACAAAATGCAGGGAGTGCTGGTGATGTGCTGGACGATGACCCTGTTG
GGAGGCTCAAGGTGTTTATCTATGATCTCCCTGGAAAATACAACAAGAAGCTGCTGAAGAAAGACCCTCGGTGCCTGAAC
CACATGTTCGCCGCGGAGATCTTCATGCACCGGTTCCTGCTGTCGAGCGCGGTTCGGACCACTAATCCTGAGGAAGCAGA
TTGGTTCTACACACCCGTGTATCCGACATGTGACCTGACGCCTTCGGGTCTCCCCTTGCCCTTCAAGTCTCCACGCATGA
TGCGGAGCGCGATTGAGCTGATCGCGACGAAATGGCCTTACTGGAATAGATCAGAGGGGGCAGATCATTTCTTTGTCACA
CCACATGACTTTGGCGCTTGCTTCCATTATCAGGTACAGACACATGAGCAAATCCTTGCTGT------------------
---TTATTTGATTAACTGAATACTACTGTAGATGTTAAGCAGTTGTTCAGTACTGGAGTCCATGTGTTTTGAACAGCTGG
GGCATATCTAATTGCAGCACAAAGCATGTGGACAGTGGGGCATCAAGATGCTAGTTTTTTTCATTTGCACTTATCAATGG
GCAACTCTGACTTAAGTACTTCAGTCTGCAAATGCTCTGTCCTTCGTTTCAGATAATGATTTGCTTGCTTTTTCTGTATA
AAAAAAGTCTGACTACTCTTTAGATTTACAGTTAGCTGTCCAATTGAAAATAACTACATGCCAATCTGCCATGT------
----TTTTTTCTGACTGACACATTATCTCTGATGCTTATTCCAGCACAATTTTGTCCTTCTGTAACACGAGCTTCCTTTA
TTATTTCAGGAAGAGAAAGCAATTGGACGAGGAATCCTTCCCTTGCTTCAGCGTGCTACACTGGTTCAGACCTTTGGACA
AAAGAACCATGTCTGCTTGAAGGAAGGCTCCATCACAATTCCGCCATTTGCGCCTCCGCAGAAAATGCAAAATCACCTTA
TTCCCGGAGAGACCCCTCGATCCATCTTCGTATACTTCCGTGGTCTGTTCTACGACACCGGCAATGATCCCGAGGGTGGA
TACTACGCAAGGTAAATTGCTGTCTGTCGAAAAATGCA--ATTAGTCCTATTGATCCTGCTATTCCCTCTTATTGCATTG
T-----ATTGCCGATCTGACATTCCTATGTATTCTGCAGAGGTGCTCGTGCATCTGTCTGGGAGAACTTCAAGAACAACC
CGCTGTTCGACATCTCAACCGATCACCCACCGACGTACTACGAAGATATGCAGAGGTCTGTGTTCTGCCTATGCCCATTG
GGCTGGGCTCCATGGAGCCCCAGGCTGGTGGAAGCCGTGGTTTTCGGCTGCATCCCGGTGATCATCGCAGACGACATCGT
CCTCCCCTTCGCGGACGCCATCCCATGGGAGGAGATCGGCGTGTTTGTTCCCGAGGAGGACGTCCCAAGGCTGGACAGCA
TCCTGACATCCATTCCGACAGAGGACATACTGAGGAAGCAAAGGCTTCTCGCAAACCCTTCGATGAAGCAGGCCATGCTG
TTCCCCCAGCCAGCTCAAGCAGGAGATGCATTCCATCAGATACTGAACGGGCTCGCTCGCAAGCTTCCGCATGGCGAAGA
TGTCTTCTTGAAGCCCGGCCAGGTCCGCCTGAACTGGACCGCTGGCCCGGTGGGTGACCTGAAGCCGTGGTAG-------
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>chr3D_1_TraesCS3D01G433400
TTTCATTCATCCCGTGTAAAAAGAAAAAAAAACAATTCAGATTACTAAA-AGAAAGCGCCTATTCTCGTAGACGCAGAAA
AATGATCATGACTCACGACACTACGTGTCTATCTTCCCAATGCCGCGTGGTTCAACTACCCGCCTACTCAGATAGTCACG
C----------CACTCCGGTTCGCCCTCCGATCGTCGGCAGAAATGAGTTGAGCCGTTAGTTGCGGCTTGCGGAACGGAT
TTCCAATACCTTCCACCGGGCGCCGCTTGATTTGGGCCCACAGAG-----------------------------------
-----------------------------------------CAGCCGCTTGGTATAATTCCCATCCATCCCATGTGCAAA
TTAATTACATACTCTTCTAGAGACTTGGAGAAAGAGACAGATGACTCAAATACAGTATCAATTAATCACTTACCTTCCTA
AACAAAATAAATAATTACTACTACTACTACATGCTAAAGAATGAGGGAAAAAGAGAGAGGACTTGACAGTTGACAAGTTG
ACATGTTTAAGGTGAGGACAAGTGAGAGGTCGAATGTCCAAGTTGGGTGAGGT-GAGGGGAGCAGGAAAGAAAGAAGCCT
GGCAGCAGACCCCTCACCAAACCTCCCTGGAAAA-CACGCCGCGTTAGACTAATCCAGAGCCCTACAGCTCACCCATCAT
TGGTGTGCACGGAAAGT----GAAGGAAAGCCGCAGGAAGCGAGAAGAGGGAGGGAGGGAAGAATCAGCCGCGGACAGCT
CTCCCACACCCTC-CCCTCCTCGTCTCTCAGCCAGCAGTATTAATCCCCTCCTTCCCCTTCCCTCCCTTGAAGCACACAT
GAGCCGCTCTGATTCTTCTTCAAGCTCGGCCTCGGCGTAGGAC---------------------AGGCCCTCCTCACCTT
CCGCCGCCACCAAACGCTTCTTGGTGGGACAAGCAAGGAATTGCCGGAAAAGCCTCTTCCCTGCCCCCCGTTCTCTTCTT
CTTTAACTAGCCTTGGCGATTGCCTAGCGGTTCACAAG--------GGCGGAGCCGGACGGAGAGGTGC---------TG
GGGATCGAGAGGATGATGGCGGGGCGGGTCTTGGTTGCCATTGCGGTTCTTGCGGCGGCGGCGGCG---CTGTTTGTTGC
GGCGGAGGCCCAGCAGGCGCCGGCGCAGCAGGGCCACCAGACAGAGAGGATCTCAGGTGAGGGCAGGGCCTTGTCTTGAC
TATTGACTTGATACCCATAATCTTTGTCAGTTGTTTTTTTCGAATTAAGGGGTTTCCCC-CCAATCTTGTCAGTTTGTGC
AACTCGAACTGCTTGATTTCTCTAGC-TGTTTCGTCTCCTGCATCTAGGACGCTGCTAAAGACAGCATTTTTGGCATCCT
ATATCAGGGAATTTTCATATTTGATTGCTTGTGGTTAGACTTCCCCAGCCTGAATTCTCAGGTCCCTGTTCAGAATCAGA
TGCAACTGGATTATACAGAGAGGTTGAATGGGGTAGTTTCTATTGGCGTTCCACCTCCAAATTATTTGTCTAGTTTTTGG
TTCAATTCAACCTA--GTATCTTTTATTGAACATCCAGATGATATTAGC---------------------------ACCT
CAGTTCATGTTGTCAAGACATGCACCTTGCTTAGGGCAATCATGATTCATGCCATTTAGCATAGA----GTATTAGAGTT
AGACCTTGCTTAATATACAATCCTTTCAATCAAAGTGCTATGTGACCCTGTTATCAAGCTTGGTATATTCTTTGCTCTGC
TTTTGGGCAACACTCATAGATGTCTTCTGGTCAACAAAATGCAGGGAGTGCTGGTGATGTGCTGGACGATGACCCTGTTG
GGAGGCTCAAGGTGTTTATCTATGATCTCCCTGGAAAATACAACAAGAAGCTGCTGAAGAAAGACCCTCGGTGCCTGAAC
CACATGTTCGCCGCGGAGATCTTCATGCACCGGTTCCTGCTGTCGAGCGCGGTTCGGACCACTAATCCTGAGGAAGCAGA
TTGGTTCTACACACCCGTGTATCCGACATGTGACCTGACGCCTTCGGGTCTCCCCTTGCCCTTCAAGTCTCCACGCATGA
TGCGGAGCGCGATTGAGCTGATCGCGACGAAATGGCCTTACTGGAATAGATCAGAGGGGGCAGATCATTTCTTTGTCACA
CCACATGACTTTGGCGCTTGCTTCCATTATCAGGTACAGACACATGAGCAAATCCTTGCTGT------------------
---TTATTTGATTAACTGAATACTACTGTAGATGTTAAGCAGTTGTTCAGTACTGGAGTCCATGTGTTTTGAACAGCTGG
GGCATATCTAATTGCAGCACAAAGCATGTGGACAGTGGGGCATCAAGATGCTAGTTTTTTTCATTTGCACTTATCAATGG
GCAACTCTGACTTAAGTACTTCAGTCTGCAAATGCTCTGTCCTTCGTTTCAGATAATGATTTGCTTGCTTTTTCTGTATA
AAAAAAGTCTGACTACTCTTTAGATTTACAGTTAGCTGTCCAATTGAAAATAACTACATGCCAATCTGCCATGT------
----TTTTTTCTGACTGACACATTATCTCTGATGCTTATTCCAGCACAATTTTGTCCTTCTGTAACACGAGCTTCCTTTA
TTATTTCAGGAAGAGAAAGCAATTGGACGAGGAATCCTTCCCTTGCTTCAGCGTGCTACACTGGTTCAGACCTTTGGACA
AAAGAACCATGTCTGCTTGAAGGAAGGCTCCATCACAATTCCGCCATTTGCGCCTCCGCAGAAAATGCAAAATCACCTTA
TTCCCGGAGAGACCCCTCGATCCATCTTCGTATACTTCCGTGGTCTGTTCTACGACACCGGCAATGATCCCGAGGGTGGA
TACTACGCAAGGTAAATTGCTGTCTGTCGAAAAATGCA--ATTAGTCCTATTGATCCTGCTATTCCCTCTTATTGCATTG
T-----ATTGCCGATCTGACATTCCTATGTATTCTGCAGAGGTGCTCGTGCATCTGTCTGGGAGAACTTCAAGAACAACC
CGCTGTTCGACATCTCAACCGATCACCCACCGACGTACTACGAAGATATGCAGAGGTCTGTGTTCTGCCTATGCCCATTG
GGCTGGGCTCCATGGAGCCCCAGGCTGGTGGAAGCCGTGGTTTTCGGCTGCATCCCGGTGATCATCGCAGACGACATCGT
CCTCCCCTTCGCGGACGCCATCCCATGGGAGGAGATCGGCGTGTTTGTTCCCGAGGAGGACGTCCCAAGGCTGGACAGCA
TCCTGACATCCATTCCGACAGAGGACATACTGAGGAAGCAAAGGCTTCTCGCAAACCCTTCGATGAAGCAGGCCATGCTG
TTCCCCCAGCCAGCTCAAGCAGGAGATGCATTCCATCAGATACTGAACGGGCTCGCTCGCAAGCTTCCGCATGGCGAAGA
TGTCTTCTTGAAGCCCGGCCAGGTCCGCCTGAACTGGACCGCTGGCCCGGTGGGTGACCTGAAGCCGTGGTAGCATCTCT
CGCATCGCGGTTTGGAGATGTATAAAAACCTTTTTGAAAATAAACATTTTCAGACCTGATATACTTTGCGCCTTTATACC
ACCATGGTTGCACAGTGCTGACCATAAGTCAAATGTACATCTTTTTC---AT---CTTCTTTGCTGATAGCTAGTATACC
ATAGAGCTTCATCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTC-ATTAGTTGATGAAAAATGTCAACCA
TTGTGCACTTTGTTGGTTATATGTGGATATCGTAATGGAAATTGCAAGATTTAAATCCTATCGACTGTCTGATGGTATGT
CGACACTCGACACAGGCTTGCGATCTCCAATTCTCAAGCTTGCGTATACTTTGGTGGTTGACCCGGTCGATGATTTTCAT
TCCCCCTCTCTATTTCTTTTTTCTGCATCCATGATGAACAGTTTGGGAAAGAGTGAACTATACTGTAAGAAACTTTTTTT
TTCAGAATTCTATTTTTTTGAATTGCTGTAAGAAACATTTGCTACTATCTCATTTTGGATCCTGTGAGGCTGATTGGTTG
GAGGCTTGAGAGTACACTCTGCAGACTCCACAGTCCACACCCGTCTTAATGGGCCTGGGTGAACGTTATCCACAAATGCT
AGGGCAAGCCCATTTCCATCCTCCTCGGCCTTTGCTAGATAACCACCAGGCCTAGCACCGAGCATCACCGAATCCGCTGT
TTTCCCCTCTTCTTCCCCACTCCCCAGTCTGCTCTTCCGACCCAGGTCCGCGCTGCAGATCCGCCGCCTTCGTCCGTCGA
GCACAGGAGGTAAATCGCTTCCGCCACTGGGTCCTAGCTCGCATCCACCGTGTGCTAGATCTCCCCATTCTTGCTCTGTT
TTGATTAGGCGCCACGGGGGAGCTCTGAAACAGAGTGACTGCCAATTTCTGCAGGACCTTGGAACCATGGCGACCATGAC
CAGCGAACAAATGGGGCCACCAGGTTCAGCATCGCCGACT
>chr3A_1
TTTCATTCATCCCATGTGG-----AAAAAAAACAATTCAAATTACTATGGAGAAAGCGTCTTTTCTCATAGACGTGGAAG
AACGATCATGACCCACGACAACACGTGTGTATCTTCCCAATGCCGCGTGGTTCAACTACTCGCCTACTCAGATAGTCACG
C----------CACTCCCGTTCGCCCTCCGATCGTCGGCTGAAATGATGTGAGCCGTTAGTTACGGCTTGCGGCACGGAT
TTCCAATACCTTCCACCGGGCGCCGCTTGATTTGGGCCCACAGACTCCTTAGCGTCTCTACTCGACCTAAAATGGACCGG
TGGACTTTGAAGGATCAGGAAGAGAAGCATCTGAGCCACCTCAGGCACTTGGTATAATTTCCATCCATCCCATGTGCAAA
TCAATTACATACTCTTCTAGAGACTTGGAGAAAGAGACAGAGGACCCAAATACAGTATCAATTTATCACCTACCTTCCTA
AACAAAATAAATAATCACTACTACTACTACATGCTAAAGAATGAGGGAAAAAGAGGGAGGACTTGACAGTTGACAAGTTG
ACATGTTCAAGGTGAAGACAAGTGAGAGGTCGAATGTCCAAGGTGGGTGAGGTTGAGGGGAGCAGGAAAGAAAGAAGCCT
GGCAGCAGACCCCTCACCAAACCTCCCTGGAAAA-CACGCCGCGTTAGACTAATCCGGAGCCCTACAGCTCACCCATCAT
TGGTGTGCACGGAAAGTGAAGGAAGGAAAGCCGCAGGAAGCGAGAA----GAGGGAGGGAAGAATCAGCCGCGGACAGCT
CTCCCACCCTCCCTCCCTCCTCGTCTCTCAGCCAACAGTATTAATCCCCTCCC-CCCCTTCCCTCCCTTGAAGTCCACAT
GAGCAGCTCTGATTGTTCCTCAAGCTCGGTCTCGGCGTAGGAAGAAGAAAGGGAAGCCTAGGATAGGCCCTGCTCACCTT
CCGCCGCCACCAAACGCTTCTTGGTGGGGCAAGGAAGGAATTGCCGGAAAAGCCTCTCCCCTGCCTCCCGTTCTCTTCTT
CTTTAACTAGCCTTGGCGATTGCCTAGAGGTTCAGAAGGGCAGAGCGCCGGAGCCGGACAGAGAGAGGGGCAGGTTTGTG
GGGATCGGGAAGATGATGGCGAGGCGGGCCTTGGTTGCCATTGCGGTTCTTGCGGCGGCGGCGGCG---CTGCTTGTTGC
GGCGGAGGCCCAGCAGGCGCCGGCGCAGCAGGGCCACCAGACAGAGAGGATCTCAGGTGAGGG----GCCTTGTCTTGAC
TCTTGACTTGATACCCGTAATCTTTGTCAGTTGTTTTTTTCGAATTAAGGGGTTTCC-C-CCAATCTTGTCAGTTTGTGC
AACTCGAACTGCTTGATTTCTCTAGC-TGTTTCGTGTCCTGCATCTAGGACGCTGCTAAAGACAGCATTTTTGGCATCCT
ATATCAGGGAATTTTCATATTTGATTGCTTGTGGTTAGACTTCTCCAGCCTGAATTCACAGGTCCCATTTCACAATCAGA
TGGGACTGGATTGTACAGATAGGTGGAATGGGGTAGTTTCTATTGCCGTTCCACCTCCAAATAATTTGTCTAGTTTCTGG
TTCAATCCAAACTA-----TCTTTTATTGAACATCCAAATGCTATTAGCACCTCAGTTCATATAGTCAAGACATGTACC-
--------------------------TTGCGTAGGGCAATCATGATTCATGCCATTTAGCATAGATAGAGTATTAGAGTT
AGACCTTGCTTATCATACAATCCTTTCAATCAAAGTGCTATGTGATCCTGTTATCAAGCTTGGTATATTCTTTGCTCTGC
TTTTGGGCGACACTCATAGATGTCTTCTGGCCAACAAAATGCAGGGAGTGCTGGTGACGTGCTGGACGATGACCCTGTTG
GGAGGCTCAAGGTGTTTATCTATGACCTCCCTGGAAAATACAACAAGAAGCTGCTGAAGAAAGACCCAAGGTGCCTGAAC
CACATGTTCGCCGCGGAGATCTTCATGCACCGGTTCCTGCTGTCGAGCGCGGTTCGGACCACTAATCCCGAGGAAGCGGA
TTGGTTCTACACACCTGTGTACCCGACATGCGACCTGACGCCTTCGGGTCTCCCCTTGCCCTTCAAGTCTCCGCGGATGA
TGCGCAGCGCGATCGAGCTGATCGCGACGAAATGGCCTTACTGGAATAGATCGGAGGGGGCAGATCATTTCTTTGTCACG
CCACATGACTTTGGCGCTTGCTTCCATTATCAGGTACAGACACATGAGCAAATCCTTGCTGT------------------
---TTATTTGATTAACTGAATAC-----TACATGTTAAGCAGTTGTTTAGTACTGGAGTACATGTGTTTTGAACAGCTGA
GGGATTTCTAATTGCAGCACAAAGCATGTGGACAGTGTGGCATCAAGATGCTAGTTTTTTTTATTTGCACTTATCAATGG
GCAACTCTGACTTAAGTACTTCAGTACATGT----TCTGTCCTTTGTTTCAGATAATGATTTGCTTGCTTTTTCTGTATA
AAAAAGGTCTGACTACTCTTTAGATCTACAGTTAACTGTCCAATTGAAAATAACTACATGCCAATCTGCCATGTCATACC
ATGTTTTCTTCTGACTGACACATTATCT-TGATGCTTATTCCAGCACAATTTTGTCATTCTGTAACAAGATCTTAAATTA
TTATTTCAGGAAGAGAAAGCAATTGGGCGAGGAATCCTTCCCTTGCTTCAGCGTGCCACACTGGTTCAGACCTTTGGACA
GAAGAACCATGTCTGCTTGAAGGAAGGCTCCATCACAATTCCGCCATTTGCGCCTCCGCAGAAAATGCAGAATCACCTTA
TTCCTGGCGAGACCCCTCGATCCATCTTCGCATACTTCCGTGGTTTGTTCTATGACACCGGCAATGATCCTGAGGGTGGA
TACTATGCCAGGTAATTTTTTGTCTGTCGAAAACTGATGCATCAGTCTTATAGATCCTGCTATTCCCTCTTATTGTATTG
TTTTGTATTGTCAGTCTGACATTTCTATGTATTTTACAGAGGTGCTCGTGCATCTGTCTGGGAGAACTTCAAGAACAACC
CGCTGTTCGACATCTCAACCGATCACCCACCGACATACTATGAAGATATGCAGAGGTCTGTGTTCTGCCTGTGCCCATTG
GGCTGGGCACCATGGAGCCCCAGACTGGTGGAAGCCGTGGTTTTCGGCTGCATCCCGGTGATCATCGCAGACGACATCGT
CCTGCCCTTCGCGGATGCCATCCCATGGGAGGAGATCGGCGTGTTTGTTCCTGAGGAGGACGTCCCGAGGCTGGACAGCA
TCCTGACATCCATTCCAACAGAGGACATACTGAGGAAGCAAAGGCTTCTCGCAAACCCTTCGATGAAGCAGGCCATGCTG
TTCCCCCAGCCAGCTCAAGCAGGAGATGCGTTCCATCAGATACTTAACGGGCTTGCCCGCAAGCTTCCGCATGGCGAAGA
TGTCTTCTTGAAGCCCGGCCAGGCCCGTCTGAACTGGACTGCTGGCCCGGTGGGTGACCTGAAGCCGTGGTAGCATCTCT
CGCATCGCGGTT-GGAGATGTATAAAAACCTTTTTGAAAATAAACATTTTCAGGCCTGATATACTTTGCGCCTTTATACC
GCCATGGTTGCACAGTGCTGACCATAAGTCAAATGTACATCTTTTTTTCTTTTACCTTCTTTGCTGATAGCTAGTATACC
ATAGAGCTTCATCC---------------CTTTTTTTTCCCTTTCTTCTTTTTATATTAGTTGATGAAATGTGTCAACCA
TTGTGCAGTTTGTTCGTTATATGTGGATATGATAATGGAAATTGCAAGATTTAAACCCTATTGACCGTCTGATGTTACAC
-------CGGCACATGCTTGCGATCTCCAGCTATCAAGCCTGC-------------------------------------
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>chr3B_87
--------------------------------------------------------------------------------
-------ATGACTCACGACAACACGTGTCTATCTTCCCAACGCCGCGTGGTTCAACTACTCGCCTATTCAGATAGTCACG
CCACTCCCGTTCACTCCCGTTCGCCCTCCGATCGTCGGCAGAAATGATTTGAGCCGTTGGTTGCGGCTTGTGGAACGGAT
TTCCGTTACCTTCCACCGGGCGCCGCTTGATTTGGGCCCACAGAG-----------------------------------
-----------------------------------------CAGCCCCTTGGTATAA-TTCCATTCATCCCATGTGCAAA
TCAATTACATACTCTTCTAGAGACTTGGAGAAAGAGAAAGAGGACCCAAATACAATATCAATTAATCACTTACCTTCCTA
AACAAAATAAATG------ACTACTACTCCATGCCAAAGAATGGGAGAAAAAGAGAGAGGACTTGAT--------AGTTG
ACATGTTTAAGGTGAGGACAAGTGAGAGGTCGAATGTCCAAGTTGGGTGAGGT-GAGGGGAGCAGGAAAG----AAGCCT
GGCAGCAGACCCCTCACCAAACCTCCCTGGAAAAACACACCGCATTAGACTAATCCAGAGCCCTACAGCTCACCCATCAT
TGGTGTGCACGGAAAGT----GAAGGAAAGCCTCAGGAAGCAAGAAGAGGGGGAGAGGGAAGAATCAGCCGCGGACAGCT
CTCCCCCACCCTC-CCCTCCTCGTCTCTCGGCCAGCAGTATTAATCCCCTCCTTCCCCTTCCCTCCCTTGAAGCACACAT
GAGCAGCTCTGATTGTTCTTCAAGCTCGGCCTCGGCGTAGGAC---------------------AGGCCCTCCCCACCTT
CCGCCGCCACCAAACGCTTCTTGGTGGGGCAAGG----AATTGCCGGAAAAGCCTCTTCCCTGCCCCCCGTTCTCTTCTT
CTTTAACTAGCCTTGGCGATTGCCTAGCGGTTCAGAAG--------GGCGGAGCCGGACGGAGAAGTGC---------TG
GGGATCGAGAGGATGATGGCGAGGCGGGTCTTGGTTGCCATTGCGGTTCTTGCGGCGGCGGCGGCGGCGCTGTTTGTTGC
GGCGGAGGCCCAGCAGGCGGCGGCGCAGCAGGGCCACCAGACAGAGAGGATCTCAGGTGAGGG----GCCTTGTCTTGAC
TTGATAGCGGC-------AATCTTTGTCAGTTTTTTTTTTCGAATCAAGGGGTTTCC-CCCCAATCTTGTCAGTTTGTGC
AACTCGAACTGCCTGATTTCTCTAGTTTGTCTCGTGTCCTGCATCAAGCA-GCTGCTAAAGACAGCATTTTGGGCATCTT
TTATTAGGAG-TTTTCATATTTGATTGTCTGTGGTTAGACTTCCCCAGCCTGAATTCTCAGGCCCCTTTTCAGAATCAG-
------------------------------------------------------------ATAATTTGTCTAGTTTCTGG
TTCAATTCAAACTACTGTATCTTTTATTGAACCTACAGATGATATTAGC---------------------------ACC-
--------------------------TTGCTTAGGGCAATCATGATTCATGCCATTTAGCATAGA----GTATTGGAGTT
AGACCTTGCTTAATATACAATCCTTTCAATCAAAGTGCTATGTGATACTGTTATCAAGCTTGGTATATTCTTTGCTCTGC
TTTTGGGCAACACTCATAGATGTCTTCTGGCCAACAAAATGCAGGGAGTGCTGGTGATGTGCTGGACGATGACCCTGTTG
GGAGGCTCAAGGTGTTTATCTATGACCTCCCCGGAAAATACAACAAGAAGCTGCTGAAGAAAGACCCAAGGTGCCTGAAC
CACATGTTCGCCGCAGAGATCTTCATGCACCGGTTCCTGCTGTCGAGCGCGGTTCGGACTACTAATCCCGAGGAAGCGGA
TTGGTTCTACACACCCGTGTACCCGACATGCGACCTCACCCCGTCGGGTCTCCCCTTGCCCTTCAAGTCTCCGCGGATGA
TGCGCAGCGCGATCGAGCTGATCGCGACGAAATGGCCTTACTGGAATAGATCGGAGGGGGCAGATCATTTCTTTGTCACA
CCACATGACTTTGGCGCTTGCTTCCATTATCAGGTACAGACACATGAGCAAATCCCTGCTGTTGCACACATTCTCAGATT
CTCTTATTTGATTAACTGAACTC-----TAGACGTTAAGCAATTGTTTAGTACTGGAGTACATGTGTTTTGAACAACTAG
GGGATATCTAATTGCAGCATGGAGCATGGGGACAGTGGGGCATCAAGATGCTAGTTTTATCATTTGTGT-TTATGAATGG
GCAACTCTGACTTAAGTACTTCAGTCTGCACATGCTTTGTCCTTTGTTTCAGATAATGATTTGCTTGCTTTTCTGTATAA
AAAAAAGTCTGACTACTCTTCAGATTTACAGTTAGCTGTCCAATTGAAAATAACTACATGCCAATCTGCCATGTCATGCC
ATGTTTTTTTCTGACTGACACATTATCTCTGATGCTTATTCCAGCACAATTTTGTCCTTCTGTAACACGAGCTTCCTTTA
TTATTTCAGGAAGAGAAAGCAATTGGACGTGGAATCCTTCCCTTGCTTCAGCGTGCCGTACTGGTTCAGACCTTTGGACA
AAAGAACCATGTCTGCTTGAAGGAAGGCTCCATCACAATTCCGCCATTTGCGCCTCCACAGAAAATGCAAAATCACCTTA
TTCCCGGAGAGACCCCTCGATCCATCTTCGTATACTTCCGTGGTCTGTTCTATGACACCGGCAATGATCCCGAGGGTGGA
TACTACGCGAGGTAAATTGTTCTCTGTCGAAAAATGCA--ATTAGTCCTATTGATCCTGCTATTCCCTCTTATTGCATTG
T-----ATTGCCGATCTGACATTCCTATGTATTCTGCAGAGGTGCTCGTGCATCTGTCTGGGAGAACTTCAAGAACAACC
CGCTGTTCGACATCTCAACCGATCACCCACCGACATACTATGAAGATATGCAGAGGTCTGTGTTCTGCCTGTGCCCATTG
GGCTGGGCTCCATGGAGCCCCAGGCTGGTGGAAGCCGTGGTTTTCGGCTGCATCCCGGTGATCATCGCAGACGACATCGT
CCTGCCATTCGCGGACGCCATCCCATGGGAGGAGATCGGCGTGTTTGTTCCCGAGGAGGATGTCCCGAGGCTGGACAGCA
TCCTGACATCCATTCCGACAGAGGACATACTGAGGAAGCAAAGGCTTCTCGCAAACCCTTCGATGAAGCAAGCTATGCTG
TTCCCCCAGCCAGCTCAAGCAGGAGATGCATTCCATCAGATACTGAACGGGCTTGCTCGCAAGCTTCCGCATGGCGAAAG
TGTCTTCTTGAAGCCCGGTCAGGCCCGTCTGAACTGGACTGCCGGCCCGGTGGGTGACCTCAAGCCTTGGTAGCATCTCT
CGCATCGCGGTTTGGAGATGTATAAAAACCTTTTTGAAAATAAACATTTTCAGACCTGATATACTTTGCGCCTTTATACC
GCCATGGTTGCACAGTGCTGACCATAAATCAAATGTACATCCTTTTTTTTAT---CTTCTTTGCTGATAGCTAGTATACC
ATAGAGCTTCATCCTTTTTC--------------------TCTTCTTCTTTTTATATTAGTTGATGAAATGTGTCAACCA
TTGTGCGCTTTGTTTGTTATATGTGGATATCATAATGGAAATTGCAAGATTTAAACCCTATCGGCCGTCTGATGTTATAC
-------CGGCACATGCTTGCGATCTCCAGTTGTCGAGCCTGC-------------------------------------
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>chr3A_2867
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----------------------------------TGCAGGGGCGCGCGGGCGTCGGTGTGGGAGAACTTCAAGGACAACC
CTCTGTTCGACATGTCGTCGGAGCACCCGTCGACGTACTACGAGGACATGCAGCGGGCCATCTTCTGCCTGTGCCCTCTG
GGGTGGGCGCCGTGGAGCCCGCGGCTGGTGGAGGCGGTGGTGTTCGGGTGCATCCCGGTGATCATCGCCGACGACATCGT
CCTCCCCTTCGCGGACGCCATCCCGTGGGAGCAGATCAGCGTGTTCGTGGCGGAGGCGGACGTGCCGCGGCTCGACTCCA
TCCTGGCGTCGGTGGCGCCCGAGGACGTGCTCCGGAAGCAGCGCCTGCTGGCCAGCCCGGCCATGAAGCAGGCCGTGCTC
TTCCACCAGCCGGCCAGGCCCGGCGACGCCTTCGACCAGGTGCTCAACGGGCTCGCCCGCAAGCTGCCGCACCGGGAGGG
CGCGTTCCTCAAGCCCGGCCAGAAGGTGCTCGACTGGAACGCCGGCCTCGACAGCGACCTCAAGCCGTGGTAGC------
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>SNPs
-------------S---SSSSSSS---------------S-------SS---------S--S-----S------SS---S
--S-----------------SS-------------------------------------S--------------------
-----------------S-----------------------------S--------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S------------S--------------------
-S---------------------------------------S---S----------------------------------
---------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----S---------S-----------------------------------------------------------------
----------------------------S----S----------------------------------------------
----------------------------------S---------------------------------------------
---------------------S----------------------------------------------------------
---------------------------------------------------------------SSSS-------------
-S--------------S----------------------------------------S----------------------
-----------------------------------S--------------------------------------------
-------------------------------------------------------------------S------------
--SS--------S------S----S--------------------S----------------S-------------S---
----------S--------------------------------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------S-------------------------------------------------
-------------------------S-----------------------------------------SS-----------
--------------------------------------------------------------------S--------S--
---------------------S--------S-----------------------------------------S--S----
----S--------S--------------------------------------S---------------------------
--------------------------------------------------------------------------------
-----------------------SSSSS-------------------S-----------S--------------------
--S----------------------------------------------------------S------------------
------------------------------S-------------S-----------------------------------
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--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------S----------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
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-----------------------S---S----------------------------------------------------
--------------------------------------------------------------------------------
S---------------------------------------------S---------------------------------
-------------S---S-SSSSSSSSSS---S--S---S-------------S---------------SS---------
--------------S----------------S-----------------------S---------S--------S---SS
SSSSSSS--S----S--------------S--S------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_178
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------------------------------------------------------------------------------CA
GATAGTCACGCCACTCCG--------------------------------------------------------------
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>reverse_1396
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-----------------------------------CTCCTGCATCTAGGACGCTG-------------------------
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>forward_1142
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--GATCGAGAGGATGATGGCGG----------------------------------------------------------
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>reverse_2174
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-------------TGAGCTGATCGCGACGAAAT-----------------------------------------------
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>forward_2111
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-----------CACCCGTGTATCCGACATGT-------------------------------------------------
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>reverse_3976
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-------------------------------------------------------GGTTGACCCGGTCGATGATT-----
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----------------------------------------
