>input_sequence_33570
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---------------------------------------------------------------------------ATGGA
GCATATCGCGAGGTTCTTCTTCGGGGTCTCAGGTGAGCGAGCGCCATGGCCGATGTTCTTCTTCCCTCTGTTTGGCGTTC
TTTTTTTCTTCATCTTCTTT--TGTGGATTGGTCTGAGTCTGACGGCTGTTTTTCATTT-GGCAGGCAATGTTATCGCTC
TGTTCCTCTTCCTGTCGCCGGTGTAAGTGCTCCTGTGGCGCATAGCCTCCTTGATTTCCTCTGT-TTCCTTTCGCTGAGC
TCTTGCGGTGTGAGCACAAACATGGAAACAG-AAGGACCTGTGAATGATATAGCGCTCTGTTCTTGGAAAGTGCCAGCCT
TCTCTGAACTTTGCTTTCCTCTCCACGCACCATTTCGTTCTTTCTCGAAGAGTGGTTCTGAGAAACCAACCAGTCAGCAC
ATGAAACCCTGCAGATCTTTGATGCTGACTGAAAGTTAGAATCTGTGTACCATCTATCTAGAGACAGACTAACTAACTCT
CATGTCGCACTCCATTGTTGTTATTTTTTTTTTAGAAAAGGAGGATGACCCCTAATTAATTATTTCCTGAAGCTCTGATC
TACATTTCCTGCTTTTCTCGGCGTGCTCG---ATTAATATTTTC--TTCTGAGCGGTGAGAAATCCTTGTGTGCTGTGTT
GCTGCAGCGTCACCTTCTGGAGGATCATCAAGAGGAAGTCGACGGAGGACTTCTCCGGCGTGCCATACAACATGACGCTG
CTCAACTGCCTCCTATCCGCATGGTAACCAACCGCTCCCCAACCCACACGCTTCACTCTGCTGGTACCG-----------
----------GTAGAAGGCTAGATAGACACACCGGCCTTTTCTCTAAAAAGTAGCGGCAACA--ACACAGCCTTCGCATG
CACGACTGA---TTCTTCGGTTCTTCCATGCCATTTTTCACA----------AAAGCAGCTTAA-TTCACAATGAAAAAT
TCCGTGCTTGCAACCTGCAAGGGTCACCTGCTGGATCTGTTCTGGGCATG---TATAT--TCAAACATGTGAGCGAACA-
----------------------------------GTGCAGAAGAAACACTGCAGCTGATGGAACCAGGAGTGAGTTTTTT
TTTTCTTCTTTTGAAAGGAACCAGGCGTGAGTTGGCTCCTAGCGTAGATGACTAGCCTGTGTCCGGTTTCCTCTGTAGAT
GGAAAG----CTGGTGCTGGGCCCATTTACCAGCACCGGGACAGTGACTGGTACCACGGGCCCGGGAACGATAAATTTGT
GCTGCACGGTTCGTGCACGGCCACCCTGGCCTGTCGGCGTTGC----CAGCCGGGCAGTGACGTGTCCTCGCGTTCATGT
GTTTCTACTTTGCACCTAGCTCGATGGAAAAAGGGTTTTCTGGTTACGATTTCAGTGTGTTTGGCAGGTAAAAATAATGG
TTTT--------------------------------------------GTTGGGTGGATTAAAGGTACGGGCTGCCGTTC
GTGTCCCCGAACAACATCCTGGTGACGACGATCAACGGCGCGGGGTCGGTGATCGAGGCAATCTACGTGGTCATCTTCCT
CATCTTCGCGGAGCGCAAGGCCAAGATCCGGATGCTGGGCCTCCTCAGCGTGGTCACCACCATCTTCGCCACGGTGGTGC
TGGTGTCGCTGCTGGCGCTGCACGGCAAGGCTCGCACGGTCTTCTGCGGCCTCGCCGCCACCGTCTTCTCCATCTGCATG
TACGCCTCGCCGCTCTCCATCATGGTACGCACGCACGCACGCACGCACGCAGACACACAGACTAATTGTAATTGATTTAC
CTCTAGTTTTCATCCATGTATTCAGTCATGACCCATGCATGCGTGTGTGCACT-GCAGAGGTTGGTGATCAAGACCAAGA
GCGTGGAGTACATGCCGTTCCTGCTGTCGCTCTCCGTGTTCCTCTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGC
CTCGACCCCTTCATCTACGTACGTCATCTCTCTTCTC-----CACCCCTGCCAAGCCAAGATCCCATCGACATG------
-----------TCGTTCTGATCCATGATCCATCCATGTCGTGCTGGCCGATGGGTACTAGCAAACCCATGCACTGCACGG
CCGGTACGGTGTGCGCTGCACTGCTAGCTGTAGCCATTGAATGCT-----------------------------------
---------------C---------------------------------------------------------CAGCGAG
ACATGCGGCGCATTGCTGGAGTACAACATGTAG----------TTCAAAAGTAAAAAAAAGAAGCTGACACGTA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTTTACGCGCGCGCATGCATGCAGATCCCCAACGGGTGCGGGAGCTTCCTGGGCCTGATGCAGCTCATCCTCTACGCC
ATCTACCGGAAGAACAAGGGCCCCGCTGCCGGCGCCGTGCCGGCCGGCAAGGGGGAGGACGCCGGCGACGAGGCCGACGA
GGTGGAGGACGCCAAGAAGGCGGCCGCGGCGGTGGAGATGGGCGAGGCAAAGATCAAGGTCAATGACGACACC-------
-----------GCCGTCGTCGACAAGGTCGCCGCCCAGGTGTAG------------------------------------
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---
>chr3D_1_TraesCS3D01G403300
TGTGTCACATGGTCGCGGAGGGTTCGAAGCATGAGAGAACAGCACGGGGAGGTGGTTGCAAATAACTCCACATCCAAGAC
AATTATCCAGCAAAAATGTAGTATGGGTGCCGCCACCAACGAAGACCATTGAAATGCCTCCGTATAGCGGCATCGCCCAC
ATAAAAATCGACAGGATGATCCATTCCTAAACAAACATGAAAAATAAAAAATGCAACTTTTCGAGATTAAAAAAAATAGA
CGTCGGAAAAACTTCTC-TTCGACTCGGAATCGCAAAATACAGTGCCCTACTCAAGACTTAAAAGC-TGGGAGAAACGAT
TTCACGGTGGCCTCTCCCATCCGCTACAGTGGCCACCATAGTGGGCAATCGCGGAAATCTTTTAGGCAGGAGAGATGAGT
TCTAGAGGTTGTTGCTGATTTTGGAGTCGTTTGAAGAGATTTATACATACACGATACTC---------------------
------------------------------------------------------------TCACGACACTTATGTTAGAG
CGGTTACTTTTCCGAAGGAAATGACAGTGTCTTGTACCGATGGATTAATGAC-----CGTACGATGTACTCCATCTGTAA
TACGTATATAGGAACTTCTTTTTGACAGAGTACGTGCCAGTGTTGCTGAATTATCACTGTCGGAGCGTATTTGTGTTT-C
CCACCGAACATTCTTTCGTCACGCAGGAGTAGATAAGCTCGAAATGAATAAGCAAGCCCACTCTCTGCATCCTGCTCACC
TCTCTC-TGTTCCCTATATATCGTCTC-----TCGCACCCCTTCAGTCCAGCCAC------------ACATCACCGCAGA
CGCAGAGAAAGACACGCCGCATTCGTAACGCTAGCTCCCGTGTTGCCTAGCGCGGTACTGATTACCGAGCCGTTGGGAGC
TGAGAGCTACTCGGTGCAGCTGAGTGCCCGAGTAC-------TCCTCTGTCCTCTCCACTCCCCCCCTCTCCTCCTCTCT
CTCTCGGCCGAGAAGGATAGATAGACCTAACCTCTCCCTCTC-CCCCGCCGCGTTCTTGGGGTAGACGCGCCGAGATGGA
GCATATCGCGAGGTTCTTCTTCGGGGTCTCAGGTGAGCGAGCGCCATGGCCGATGTTCTTCTTCCCTCTGTTTGGCGTTC
TTTTTTTCTTCATCTTCTTT--TGTGGATTGGTCTGAGTCTGACGGCTGTTTTTCATTT-GGCAGGCAATGTTATCGCTC
TGTTCCTCTTCCTGTCGCCGGTGTAAGTGCTCCTGTGGCGCATAGCCTCCTTGATTTCCTCTGT-TTCCTTTCGCTGAGC
TCTTGCGGTGTGAGCACAAACATGGAAACAG-AAGGACCTGTGAATGATATAGCGCTCTGTTCTTGGAAAGTGCCAGCCT
TCTCTGAACTTTGCTTTCCTCTCCACGCACCATTTCGTTCTTTCTCGAAGAGTGGTTCTGAGAAACCAACCAGTCAGCAC
ATGAAACCCTGCAGATCTTTGATGCTGACTGAAAGTTAGAATCTGTGTACCATCTATCTAGAGACAGACTAACTAACTCT
CATGTCGCACTCCATTGTTGTTATTTTTTTTTTAGAAAAGGAGGATGACCCCTAATTAATTATTTCCTGAAGCTCTGATC
TACATTTCCTGCTTTTCTCGGCGTGCTCG---ATTAATATTTTC--TTCTGAGCGGTGAGAAATCCTTGTGTGCTGTGTT
GCTGCAGCGTCACCTTCTGGAGGATCATCAAGAGGAAGTCGACGGAGGACTTCTCCGGCGTGCCATACAACATGACGCTG
CTCAACTGCCTCCTATCCGCATGGTAACCAACCGCTCCCCAACCCACACGCTTCACTCTGCTGGTACCG-----------
----------GTAGAAGGCTAGATAGACACACCGGCCTTTTCTCTAAAAAGTAGCGGCAACA--ACACAGCCTTCGCATG
CACGACTGA---TTCTTCGGTTCTTCCATGCCATTTTTCACA----------AAAGCAGCTTAA-TTCACAATGAAAAAT
TCCGTGCTTGCAACCTGCAAGGGTCACCTGCTGGATCTGTTCTGGGCATG---TATAT--TCAAACATGTGAGCGAACA-
----------------------------------GTGCAGAAGAAACACTGCAGCTGATGGAACCAGGAGTGAGTTTTTT
TTTTCTTCTTTTGAAAGGAACCAGGCGTGAGTTGGCTCCTAGCGTAGATGACTAGCCTGTGTCCGGTTTCCTCTGTAGAT
GGAAAG----CTGGTGCTGGGCCCATTTACCAGCACCGGGACAGTGACTGGTACCACGGGCCCGGGAACGATAAATTTGT
GCTGCACGGTTCGTGCACGGCCACCCTGGCCTGTCGGCGTTGC----CAGCCGGGCAGTGACGTGTCCTCGCGTTCATGT
GTTTCTACTTTGCACCTAGCTCGATGGAAAAAGGGTTTTCTGGTTACGATTTCAGTGTGTTTGGCAGGTAAAAATAATGG
TTTT--------------------------------------------GTTGGGTGGATTAAAGGTACGGGCTGCCGTTC
GTGTCCCCGAACAACATCCTGGTGACGACGATCAACGGCGCGGGGTCGGTGATCGAGGCAATCTACGTGGTCATCTTCCT
CATCTTCGCGGAGCGCAAGGCCAAGATCCGGATGCTGGGCCTCCTCAGCGTGGTCACCACCATCTTCGCCACGGTGGTGC
TGGTGTCGCTGCTGGCGCTGCACGGCAAGGCTCGCACGGTCTTCTGCGGCCTCGCCGCCACCGTCTTCTCCATCTGCATG
TACGCCTCGCCGCTCTCCATCATGGTACGCACGCACGCACGCACGCACGCAGACACACAGACTAATTGTAATTGATTTAC
CTCTAGTTTTCATCCATGTATTCAGTCATGACCCATGCATGCGTGTGTGCACT-GCAGAGGTTGGTGATCAAGACCAAGA
GCGTGGAGTACATGCCGTTCCTGCTGTCGCTCTCCGTGTTCCTCTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGC
CTCGACCCCTTCATCTACGTACGTCATCTCTCTTCTC-----CACCCCTGCCAAGCCAAGATCCCATCGACATG------
-----------TCGTTCTGATCCATGATCCATCCATGTCGTGCTGGCCGATGGGTACTAGCAAACCCATGCACTGCACGG
CCGGTACGGTGTGCGCTGCACTGCTAGCTGTAGCCATTGAATGCT-----------------------------------
---------------C---------------------------------------------------------CAGCGAG
ACATGCGGCGCATTGCTGGAGTACAACATGTAG----------TTCAAAAGTAAAAAAAAGAAGCTGACACGTA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTTTACGCGCGCGCATGCATGCAGATCCCCAACGGGTGCGGGAGCTTCCTGGGCCTGATGCAGCTCATCCTCTACGCC
ATCTACCGGAAGAACAAGGGCCCCGCTGCCGGCGCCGTGCCGGCCGGCAAGGGGGAGGACGCCGGCGACGAGGCCGACGA
GGTGGAGGACGCCAAGAAGGCGGCCGCGGCGGTGGAGATGGGCGAGGCAAAGATCAAGGTCAATGACGACACC-------
-----------GCCGTCGTCGACAAGGTCGCCGCCCAGGTGTAGCCGCCGC---TGCACAGAGAGAGTGTGCATGAGGTG
ACAGCAGCATAAGGCCGCTGCTTAATTAGTTGGTAGAGCTGTTATGCTAAGCAGATCGTCGGTGTCTGCCTTGTTGATTT
GTTTCTTGACATGGTACGT--ACGTACATTTGCCAGAAAG----CTGGTGCT-----C--------TCTCCCCAAAGGCC
AGCCTACGGGAGAGCTATGAGACAGTACTCCGAAAATCTCAAATTGTAACTGCAAGTGTGAATTA---CCTCTGCTCTGT
TTCTGTGTGTTGTACTCCTCCAAAGATCAAAGTTGGTTTTTGCCCCCTGGAAACAAACCCAAGAAACTTTTGCTTTCCTC
TCATAAATAAACCAGCATCTCCAACGCGGACTCTTAAACCACTCGCATCCGTTCGGACCGTGCTGTT-------------
-----------------------------------------TGAATGTGTCTTGCCGTCCAACGCTGTCATTTTGATTGT
CGGTATCTGCCTTCTTGATTTGATTCTTGATGACTTTATACGTACGTACATTTTGTTGGAAATATGAGCAATTTACCGAA
TAATTTTATTAACAGAAATACTAGATAAAGTATGACTAATATAGCAGAGATAAAACAAGTTATGCAATCTGACAGAGAGA
AGGTAATAGCATCTGCATATATGAATTAGAACCAAACACATCTAGAGCAAACATAACCTCAAACAGAAAGAGCATAAGAA
CGTACGAAACAGCAGCAGAAGCATTGGTCTTGGGTCGACATCCTCGCCAGCCATGTTGTTGAAGAGGTTGTCGACGCCGG
GGAAGAAGTCGTCGTGGTGTCTTGAGCGTCCGTGATGATCTGGTCAGTAGTCACGCAGAGCGCTCCCAAAAACCTTATCA
CCTTATCACCCTTCTCCCGTACATGACTCAAAGAGGTGAGATTTCGGAGGCCTACTGTCCCGACATAAGCTCAGTGGTTC
GGAACGGTGGCAAGAGGATACTACAGCAAAACGTTTCAGCAACCCGCGGCGCGTCGTGACGACGAGGCGTGGCGTGCGGC
AGA
>chr3A_7
ACATGGTTACC------GAGGGTCTCAAGCATGAGAGAACAACGCGAGGAGGCGGTTGCGGATAACTCCACATCCAAGAC
AATTGTTCGGCCAAAATGTAGTCCACGTGCCGCCGCCGATGAAGACCATCGAGATGCCTCGATATAGC-GCATCACACAC
ACAGAAATCGACAGGATGACCTATTCTTAAAAATGC-------ATGAGAAATGCAACTGCTTGAGATTAATAAAAAAATG
ATGCTGGAAAAATTTACTTTCGACTCGGTATCATAAAGTATAGTGCCCTACACAAAGATTAAAATCGTGGGAGAAACGAT
TTCCCAGCA-------------GCTATAGTCGCCACCATAGTGGGCAATCGCGGTAATTTTTCCGCTGGGATAGATGAGT
TCTAGAGGTTGTTGCTGATTTTGGAGCCGTTTGAAGAGATTTATGGAGAAATTCGCGGCAGCAACCATATGATAGCCATC
GGGCTATTTACATGCGATTTTATTTCGTGGTCCTACTACACACTACTCCCCGAATTAAAATCACGACACTTATTATTGAA
CAGTTACTTTTTTTAAGGAAATGACAGTGCCTTGTACCGATGGATTAATGATGTACTCGTACTATGCACTCCCTGTGTAA
TATAGGAACA--------TTTTTGACAGAGTGCGTGGCAGTGTTGCTGAATTATCACTGCCGGAGCGTATTTGTGTTTTC
CCACCGAACATTCTTTCGTCACACAGGAGTAGATAAGCTCGAAATGAATAAGCAGGCCCTCTCTCTGCATCCTGCTCACC
TCTCTCCTGCTCCCTATATATCGTCTC-----CCGCACCTCCTCGGTCCAGCCACACACACATCAGTACATCACCGCAGA
CGCCGAGAAAGACACGCCGCATTCGTAACGC-AGCTCCCGTGTTGCCTAGCGCGGTGCTGATTACCGAGCCGTTGGGAGC
TGAGAGCTACTCGGTGCAGCTGAGTGCCCGAGTGCTCCTCTGTCCTCTGTCCTCTACACTCCTCCCCTCTCCTC-----T
CGCTCGGCCGAGAAGGATAGATAGACCTCACCTCCCCCTCTCCCCCCACCGTGTTCTTGGGGCAGACGCGCCGAGATGGA
GCATATCGCGAGGTTCTTCTTCGGGGTCTCAGGTGAGCGAGCGCCATGGCCGATCTTCTTCTTCCCTCTGTTTGGCGTTC
TTT---TCTTCGTCTTCTTTTGTGTGGATTGGTCTGAGTCTGACGGCTGTTTTTTCATCCGCCAGGCAATGTTATCGCTC
TGTTCCTCTTCCTGTCGCCGGTGTAAGTGCTCCCCTGGCGCATCGCCTCCTTGATTTCATCTGT-TTTCTTTGGCCGAGC
TCTTGTGATGCGAGCACAACGATGGAAGACCCAAGAACCTGTGACTG--ATAGCGCTCTGTTCTTGGA------------
------------GCCTTCCTCTCCACGCACCATTTCTTTCTCAAATT-ATAGTTCTGATGGTAAACCATC-AGTCAGTAT
ACAAACCTTGCAGTTTCGTTGGTGCTCGCACAAAGTTGGAGCACC----------ATCTAGAGACAGACTGGCTAGATCC
CATGCCGCACTCCATTGCTGTTACCATTATC-------------------------------TTTTCTGAAGCTCTGAGC
TACATTTTCCTGCCTTCTCGCCGTGCTTGATTATTCTTTTGTTTTGCTCTGACCGGTGAGAAATCCCGC-GTGCTGTGTT
GCCGCAGCATCACCTTCTGGAGGATCATCAAGAGGAAGTCGACGGAGGACTTCTCCGGCGTGCCATACAACATGACGCTG
CTCAACTGCCTCCTATCCGCATGGTAACCAACCGCTCCCCAACTCCCGCATGCTTCAGACACAGTCTCTTGCACTCTTGT
ACTACCACTAGTAGCAGGATAGATAGACACGCCGGAC-TTTCTCTAAAAAGTATAGCA-GCAACACACGGCCTTGGCATG
CACGACTGATCCTCCTTACATGCCATCTCCATGTACTATTATTACAGTTCACAAAGCAGCTCAGTTTTACAGTGAAAATC
CCCATGCTTGCAAGTTGCAAGGATC---TGTTGGATCTGCTGTGCTCTTGGGATACAT--TGGAACATGTGAGCGAACAG
TGAAATTTTTAACTTGGCGTGTGGGTAGTTTTCCGTGCAGAAGAAACACTGCAGCTGATGGGA-----------------
--------------------TCAGGCGTGAGTTGGCTCCTAGCGTAGA---CTAGCCTGTGCCCGGTTTCCCCGGTAGAT
GGAAAG----CTGGTCCTGGACCCACCTGCCAGCGCCGCGGC-------AGTACTACGGCCCCGGGAACGATAAATTTGT
GCTGCACGGTTCGTGCACGGCCACCCTGGCCTGTCGGCGTTGC----CAGCCGGGCAGTGACGTGTCCTCACGTTCATGT
GCTTCTAATTTCCACCTAG----ATGGAAAACATTTTTTTTGGACAAGTTATTAGTTCATCCTGTCAGGACTAACCAATC
AATAAGCAAATTAACCGAGGGGAAAATCAACTGATGGTTTAACTGATGGTTGGGTGGATG-AAGGTACGGGCTGCCGTTC
GTGTCCCCGAACAACATCCTGGTGACGACGATCAACGGCGCGGGGTCGGTGATCGAGGCCATCTACGTGGTCATCTTCCT
CATCTTCGCGGAGCGCAGGGCCAAGGTCCGGATGCTGGGCCTGCTCAGCGTGGTCACCGCCATCTTCGCCACGGTGGTGC
TGGTGTCGCTGCTGGCGCTGCACGGCAAGGCCCGCACCGTCTTCTGCGGCCTCGCCGCCACCGTCTTCTCCATCTGCATG
TACGCCTCGCCGCTCTCCATCATGGTACGCACCCACGC--------ACGCAGACACACAGACTAATTGTAATTGATTTAC
CTCTAGTTTTCATCCATGTACTCGGTCATGACCCATGCGTGTGCGCGTGTGTGCGCAGAGGTTGGTGATCAAGACCAAGA
GCGTGGAGTACATGCCGTTCCTGCTGTCCCTGTCCGTGTTCCTCTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGC
CTCGACCCCTTCATCTACGTACGTCCT-TCTCTTCTC-----CTCCCCTGGCAACCCAAGATCCCATCGACATGTCGTTC
GGCTCTGATGATCGATCTGATCCATGATCCACCCGTATCGCGC---------------------------------ACGG
C-----CGGTGTGCGCTGCAGTGCTAGCTGTAGCCATTGAATGCTCCTAGTCCTTTGAGCGGATGGATTGGGATAGTGCC
CACCACATGCAACGCC---------------------------------------------------------CAGCGAG
ACATGCGGCGCATTGCTGGAGTACAACATGTACTCCTAGTTCATTCAAAAGTTAAAACAAG---CTGACAAGTAATG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTTTACGCGCGCGCATGCATGCAGATCCCCAACGGGTGCGGGAGCTTCCTGGGCCTGATGCAGCTCATCCTCTACGCC
ATCTACCGGAAGAACAAGGGCCCCGCCGCCGGCGCCG---------GCAAGGGGGAGGACGCCGACGAC---GCCGACGA
GGTGGAGGACGCCAAGAAGGCGGCAGCTGCAGTGGAGATGGGCGAGGCAAAGATCAAGGTCGACGACGACACCGCCGTCG
TCGACGAGCCGGCCGTTGTCGACAAGGTCGCCGCGCAGGTGTAGCCGCCGCCGTTGCA--GAGAGAGCTTGCATGGAGTG
ACAGCAGCATAAGTGCGCTGCTTAATTAGTTAGTAGAGCTATTATGCTACGCAGATCGTGGGTGTCTGCCTTGTTGATTT
GTTTCTTGACTTGGTACGTACACGTACATTTGCCAGAAAGAAAGCTGGTGCGGAACCC--------TCTCCCCAAAGGCC
AGCCTACGGGAGAGCTATGAAACAGTACTCCGAAAATCTCAAACTGTAACTGCAAGTGTGAATTACTACCTCTGCTCTGT
TTCTGTGTGTTGTACTCCTCCAAAGATCGAATTTGGTTTCTGCC------------------------------------
--------------------------------------------------------------------------------
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---
>chr3B_587
TGCCG---------------------------------------------------------------------------
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---------------------------------------GTGTTGCTGAATTATCACTGCCGGAGCGTATTTGTGTTTTC
CCACCCAACATTCTTTCGTCACACAGGAGTAGATAAGCTCGAAATGAAGCGTGCC-------CTCCGCATCCTGCTCACC
TCTCTC-TGTTCCCTATATATCGTCTCCCTGCTCGCACCTCTTCAGTCCAGCCAC------------ACATCACCGCAGG
CGCAGAGAAAGACACGCCGCATTCGTAACGCTAGCTCCCGTGTTGCCTAGCGCGGTACTGATTACCGAGCCGTTGGGAGC
TGAGAGCTACTCGGTGCAGCTGAGTGC---------------TCCTCTGTCCTCTCCACTCCTCCCCTCTCCTC-----T
CTCTCGCACGAGAAGGATAGATAGACCTCACCTCTCCCTCTCCCCCCACCGTGCTCTTGGGGTAGAGGCGCCGAGATGGA
GCATATCGCGAGGTTCTTCTTCGGGGTCTCTGGTGAGCGAGCGCCATGGCCGATGTTCTTCTTCCCTCTGTTTGGCGTTC
TTT---CCACCGTCTTCTTT--TGTGGATTGGTCTGAGTCTGACTGCTGTTTTCCATTT-GCCAGGCAATGTTATCGCTC
TGTTCCTCTTCCTGTCGCCGGTGTAAGTGCTCCCGTGGCGCACCGCCTCCTTGATTCTCCCTGTGTTTCTTTCGCTGAGC
TCTTGTGGTGTGAGCACAAAGACGGGATCTGAAGAAC--------------------CTGTTCTTGGA--------GCCT
TCTCTGCACTTCGCTTTCCTCTCCACGCACCATTTCTTTCTTTCTCGAAGAGTGGTTCTGAGAAACCATT-AGTCAGCAC
ATGAAACCCTGCAGATCTTTGATGCCGACTGAAAGTTAGAATCTGTGTACCATCTATCTAGAGACAGACTAACCAACTAT
CATGTCGCACTCCATTGTTGTTACCATT----------------------------------TTTCCTGAAGCTCTGAAC
TACAGTACA---TTTTTCCAGCGTGCTCG---ATTAATATCTTCTGTTCTGAGCGGTGAGAAATTTC----TGTTGTGTT
GCTGCAGCGTCACCTTCTGGAGGATCATCAAGAGGAAGTCGACGGAGGACTTCTCCGGCGTGCCATACAACATGACGCTG
CTCAACTGCCTCCTATCCGCATGGTAACCAACCGCTCCCCAACCATCACATGCTTCAGACACAGC--CTTGCACTCTTGT
ACTACTACTAGAGGC--------TAGACACACCGGCCTTTTCTCTAAAAAGTAGTAGTGGCAACACACAGCCTTCGCATG
CACGACTGATTCTTCTTCGGTTCTTCCATGCCATTTTTCACA----------AAAGCAGCTCAA-TTTACAGTGAAAAAT
TCCGTGCTTGCAACCTGCAAGGATCGCCTGCTGGATCTGTTCTAGGCATG---TACATATTCAAACATGTGAGCGAACA-
----------------------------------GTGCAGAAGAAACACTGCAGCTGATGGAG-----------------
--------------------CCAGGCGTGAGTTGGCTCCTAGCGTAGA---CTAGCCTGTGTCCGGTTTCCCCGGTAGAT
AGAAAGAAAGCTGGTCCTGGACCCACCTGCCAGCGCCGCGACAGTGAATAGTACCACGGGCCCGGGAACGATAAATTTGT
GCGTCACGGTTCGCGCACGGCCACCCTGGCCTGTCGGCGTTGCCAGCCAGCCGGGCAGTGACGTGTCCTCACGTTCATGT
GCTTCTACTTTCCACCTGCTAGATCGTA----------------------------------------------------
---AAACATTTCTCCCGAGAGAAAATTTGACTGATGGTTGGTTTG-TGGTTGGGTGGATG-AAGGTACGGGCTGCCGTTC
GTGTCCCCGAACAACATCCTGGTGACGACGATCAACGGCGCGGGGTCGGTGATCGAGGCCATCTACGTGGTCATCTTCCT
CATCTTCGCGGAGCGCAAGGCCAAGATCCGGATGCTGGGCCTCCTCAGCGTGGTCACCACCATCTTCGCCACGGTGGTGC
TGGTGTCGCTGCTGGCGCTGCACGGCAGGGCCCGCACCGTCTTCTGCGGCCTCGCCGCCACCGTCTTCTCCATCTGCATG
TACGCCTCGCCGCTCTCCATCATGGTACGCACGCACGCTACCCACGCCCAGCGAATTGATGTACGTACATGCTAGTAACT
TTCACTAACCGAGTCATGGGC----------------CGTGCGTGTGTGCGTGCGCAGAGGTTGGTGATCAAGACCAAGA
GCGTGGAGTACATGCCGTTCCTGCTGTCCCTGTCCGTGTTCCTCTGCGGCACCTCCTGGTTCATCTACGGCCTGCTCGGC
CTCGACCCCTTCATCTACGTACGTCAT-TCTCTTCTCTTCTCCACCCCTGGCAAGCCACGATCCGATCGACATGTCGTTC
GGTTCTGATGATCGATCTGATCCGTGATCCACCCGTATCGCGCTGGCCGATGGGTACTAGCAGACCCATGCACCGCACGG
C-----CGGTGTGCGCTGCACTGCTAGCTGTAGCCATTGAATGCT-----------------------------------
---------------CCTAGTCCTTGGAGCGGATGGATTGGGAGAGTGCCCACCACTTGCAAGTTGCAACACACAGCGAG
ACATGGGGCGCATTGCTGGAGTACAACCTGTAG----------TTCAAAAGTAAAAACAAG---CTGACACGTACTCCCT
CCGTTTCTAAATATTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGAAGCAAAATGAGTAAATCTACACTCTAAA
ATATGTCTACATACATCCTTATATGGTAGTTCATTTGAAATGTCTAAAAAAACAAATATTTAAGAACGGAGGGAGTAGTT
TTTTTTACGCGCGCGCATGCATGCAGATCCCCAACGGGTGCGGGAGCTTCCTGGGCCTGATGCAGCTCATCCTCTACGCC
ATCTACCGGAAGAACAAGGGCCCCGCCGCCGGCGCCGTGCCGGCCGGCAAAGGGGAGGACGCCGGCGACGAGGCCGACGA
GGTGGAGGACGCCAAGAAGGCGGCCGCCGCGGTGGAGATGGGCGAGGCCAAGATCAAGGTCGC---CGACACCGCCGTCG
ACGTCGACGAGCAGTCCGTCGACAAGGTCGCCGCCCAGGTGTAGCCGCCGC---TGCA--GAGAGAGTTCGCATGAGGTG
ACAGCAGCATAAGGCCGCTGCTTAATTAGTTAGTAGAGCTGTTATGCTAAGCAGATCGTCGGTGTCTGCCTTGTTGATTT
GTTTCTTGACATGGTACGT--ACGTACATTTGCCAGAAAG----CTGGTGCGGAACTCTCTCCCGGTCTCCCCAAAGGCC
AGCCTACGGGAGAGCTATGAGACAGTACTCCGAAAATCTCAAATTGTAATTGCAAGTGTGAATTA---CCTCTGCTCTGT
TTCTGTGTGTTGTACTCCTCCAAAGATCAAAGTTGGTTTCTGCTCCCTGGAAACAAACCCAAGAAACTTTTGCTTTCATC
CCATAAACAAACCAGCATCTCCAT-GCGGACTCTCAAACCACTCGCATCCGTTCGGACCGTGCGGTCTGAATGTGTCTTG
CCGTCTCTCAAACCACTCGCATCCGTTCGGACCGTGCGGTCTGAATGTGTCTTGCCGTCCAACGCCGTCATTTTGATTGT
CGGTATCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>SNPs
--SSSSSS-SSSSSSSS------SSS---------------S-S--S-----S------SS-------------------
----S-S-S--S----------SSSS--------S--S-S---------S--S-------SS------S-----S-S---
-S-S---------------S-S----S----S-SS-SSSSSSS--S-S----------SS-S--------S-----S-SS
SSS-S-S----S--SS------------S---SS---S--S----------S---SSS------S---------------
---S-S-SSSSSSSSSSSSSSS----S---S-----------------------S---S---SS-SSS---S--------
--------------------------S-----------------SS-S-S-SSSSSSS----------------------
-------------------------------------------------------------------------SS-S--S
-S---------SSS---------------S---------------------S----------S---S-----S-S-----
--SSSSS-S-SSSSSSSS-------------S----S----------------------S--------------------
----------------------S-------------------------------S----S--------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------------S-----------SSSSS-
----------------------------S------------------S---S----------------------------
--------------------------------------------------------------------------------
---SSS-----S-------------------------------------------------S------------------
---------------------------------S---------S-----------------------S------------
-----S--------------S------S-S-----S--------S--SS-------------------SSSSSSSS----
------S----S------------------------S-------------------------------S-S---------
--------------------------------------------------------------------------------
-----------------------SSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-
---------SSS----------------------------S-------------------------SSSS----------
--------------------------------------------------------------------------------
---------------------------------------------S---SSSSSS-SSSSSSS--SS-S-----------
--------------S---S-----------------------------------S--SSS--------------------
-------------------------------------------------------------S-----S---S--------
----------------------S--S-----------------------------S------------------------
---------------------------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS----------------------------SSS--------------------S-S------
---------------S----S----SS-S-----S---S--------S-S------------------------------
----------------------------------------------------------------------S---------
-S---------S-------SSSS--------SSSS----S---SS-S-S-S-S---SSS-SSS-SSS-S-SS--SS-SSS
SS-S-------------------------------------------------------SS-------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
-------------------------------S-----S------------------------------------------
--------------------------------------SSS-SSSS----------------------------------
--------------------S--S--------------S-----------SSS---------------------------
----------------------------S--S------------------------------------------------
---------------------------S----------------------S-----------------------------
--------------S----------------S--S-S---S---------------------S----------S------
-SSSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S---SSS----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
---------------------------S---------------------------------S-S----------------
----------------------------------------------------------SS--------S-----------
-------------------------------S------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------------------------------------S--
S------S---------------SS---------S----------------------------S--S-------------
-----------------------------------------------------------------S--------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_332
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------------------------------------------------------------------------GAAACGAT
TTCACGGTGGCC--------------------------------------------------------------------
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>reverse_1430
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---------------------------------------------------------------------AGTGCCAGCCT
TCTCTGAAC-----------------------------------------------------------------------
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>forward_351
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-----------CTCTCCCATCCGCTACAGTG-------------------------------------------------
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>reverse_1431
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----------------------------------------------------------------------GTGCCAGCCT
TCTCTGAACT----------------------------------------------------------------------
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>forward_1381
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-CTTGCGGTGTGAGCACAAAC-----------------------------------------------------------
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>reverse_2359
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--------------------------------------GGACAGTGACTGGTACCACG----------------------
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>forward_1907
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-----------------------------------------------ACGCTTCACTCTGCTGGTAC-------------
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>reverse_3171
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--------------------------------------------------CCAAGCCAAGATCCCATCGA----------
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>forward_2227
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-----------------------------------------------ACTGCAGCTGATGGAACCAG-------------
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>reverse_4344
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-----------------------ACGCGGACTCTTAAACCACT-------------------------------------
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---
