>input_sequence_33429
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-------------------------------------------------------------------------AGAGCCG
CCGCCTGTGACCGACCGGAGAGCCAGACGACAAACCGAGCCCACCGCACCCACACCAGCACCAGCACCAGCACCAACTCC
TCCTCCTCCTCTTGCGCGGCTGCAGCTGCCGGCCATGTCGGTGGAGACGGAGCGGAGCTCCACGGAGTCCTCCGCCGCCT
CGGGCCTCGACTTCGAGGACACCGCCCTAACCCTCCGCCTCCCCGGCTCCGACCCCGACCGCAAGCGCGCCTCCACCTCC
GACCCCGACTGCCCCTCCCCGACCGCCGCCGCCTCCGACTCTCCCCCTTCCCCCAAGTACGCGCGCGTGCCTTGCCTTCT
CTCGCTCCTTCCGTCTGAAATTTGGCGCCCATGCTTTTTGAGCTGACATGGTCTCGCTGTGCAGGGCGCAGGTGGTGGGC
TGGCCACCGGTGCGGTCGTTCCGGAAGAACGCCCTCGCGGCCGCGGCCTCGTCCAAGACCAAGTTCGTCAAGGTGGCCGT
CGACGGCGCGCCCTACCTGCGCAAGGTCGACCTCAAGGCTTACGCGGGCTACACAAGCTCTGCCTCCTACGACCAGCTCC
TCGCCACGCTCCAGGACAAGTTCATCTCCCACCTCACCGTCCGTGAGTGCACCGCCGCGACATGCCATGCCTGTGTCTGT
GTGTTAGCTACGTGTTGCTCGCTC-GTGGGTTCTGACGATTTGACTGTGGATGCAGGCAAGCTTGGGAACGAGGAGATGA
AGCTCGTGGACGCGGTGAGCGGGACGGAGTATGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGAGAC
GTCCCCTGGAGGTGAATTTTTTTGGGCCTTTTGTGCTACTTTACAGTTTAAATCCGCATGTCGCTGCATCTCCTGTTGCT
CCTCAGCTATGTCCTTTTGTTTAAGTTCATATATACACTGCTTAATTAGGGTCATGGGTTGAATCGCTAACTGATCAGGT
GCTATAGCATCTCAGGTTCAGAAATCTGGATGGTTTGGTGATCGTGCGTTGTTAGTTTCAGTTTATCTTTGCTTGAGAAA
CGATTAATTTGGGTTTAATGAGTTGTTGATCTGGTAGTGATATATAAGGAACTCGGACCGGGGGGCTGAACATGAAAATT
TCTTACACTGTACCAAGGGATCACGAGATTGCTCCTGGTTTTCACTACTA------------------------------
-----TCTGTTTAACTTAGGATCCATGCCAATTGTTCTTAGT----CTGTATATTTTGTATGAGTCGTGGATCCTGCTAG
TTAAACAGAAATCTCAGAAAAACTTAAAAGAGATGTAAATGATTA-GCGGCGAGTGATGCTCATAAATTAATTTCACATG
CGTGAATTCAGCTGTTCAGTTTCTCGGACATGATTAGGGTTGAAACTAGTGTAGGAGCACTGATATTTGTTTCTGACAGC
AAGCCATTTTCCTTGCTTTCAAACTCACAGAAGACAGAAGTGTTGATTGTCTCTTGTGGAAATGGATCTTCTTACCATCC
TGTGCTGTTTCATGTGTAATGTGAATTGAATGGCTTAGGGAAACAGGACAATAACTGAGAATTGTGCCTACCAGCTCTAG
TTTTGGCCACATTTT-CCTCCAGACTTTTGTATCTATTAGCCGTGCCTCACTTACAGGAGTGCGCTCTTTAATTCATTTT
CCACAGTGTACTCTTATTGTATTAGGAGGGCTCAACAAACTTTCTGTTCGAGAAGAAATTAACAAGTTGAACTTTGCTGC
ATCTTACCACTATCAGATAACCATGTGCTAAATATAAAAGAATTTGGTTGCTTGTTTTTGTTATTAGATTTCGGGCTTCA
TTATGATTCTGTAAAAGGTTGGCTCTAATATGGTACTGATCTGCTATTATTGACCTGCAGAATGTTTGTGGAAACCTGTC
AGCGCATTCGTCTCATGAAAAGCTCTGAGGTCGTCAATCTAGGTACACATAACTCCTATGACCTTGTTTTTCAGACTAGT
GGAACTTATTGTTTTTGTTGTAGATCAACTCAATATTACTGGATAAATCTGGCTGCTCTCTTCTACCTGCAGCACCAAGA
GCTGGTCGGTGAGGCACAATCCTTGCTCCTTTTTCTACAGACCGCTTCAGAGGAAGAAATGTCTTTGCTCAGTGAGGTTC
TTCCGCAAGTTTCCGAGAGAGAAATGTGTACAGCCATCTCTACTTTTTGCCCAGCACGCTATTGAGTTCAGAAAGTGTCG
TAGCTTGTAATTCCACTACCAGTCAGTCAGTAGTATCTACATGTAAGATGGAGAGGTTGTGATGCTTCAGAAATACACCT
GCAGTTCGTTCTTGAAAAATAAGACTGCAGTCCCTGTTCTCCCGAGCTGCTTGCTACTGGAGCATGGTTTTGTGTAACTT
TATGCAAGTGAGGCACCTGGTACAAGAGTC--------------------------------------------------
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>chr1A_1_TraesCS1A01G118400
TTTTGTTTTGACAAAAGGAGAGAGTAGATTGTTGGCAAGT------ACTATTAGTTCCAGCAGTACTGAGTGGTGAGCTA
TCTCTCAAAAACAATGAACAATATAGATAGATAAATCTTACCGCTGACACGCTGTAAAATCGGCGAAGGTAACTACTAGG
------AGTACAGACAAGGCCAAAGCAGTGGGTCCCACAGGTAAAAGAGAAAAGGAAAGAGAGGAGTCGAGGTTGGTACT
AGCTGGAGGCGGAGGGT---------GGACGGCGTCGCTCTCGCGCAAAGCGTGCGGGCGAGGGCAGGGGAGGGAAGCCG
ATTCGATTCCGGCAGCGGCAGGCCCGAATGGAAAGCGAAAGCAAAGGCAAGATGCTGGAATTTAATTAGGTAAAACCGGG
CGGGTGGGGGACACGTCGCCGACAGCCCGGCGACACCCACGTGCTCCCGGCTTTATCGCCTTGTCCCCCCTCCCGTACGC
TTTCGCCGCTGGTACACGCCTTTGCCGGATCGGTGATGGAGGGCACCGGGCCGTCGGATCGGGATCGGGCGGCGCGGCGG
GGCCGAGTGGACCTGCAGGGTGGCCAACCGGCAGCCCGGGCCCACGCATGGAAAAACGGGCGGCACGAACGTTAATGCTG
CACCACCCCCACCCCCCACCGCTGGATGGATG----GACAAGGACGATGATGACCCGATTTCTCTGTTTCTTTTATTTAC
AATTACAAAAAATATAAAAATATCCCCGTGGGAATGGGGATTGCGTTTGGAGAAATCCAAGGAGGTGCGAATTTACGTTA
TGGACCCCCGCGACTCGGAGGGATGGAGCAAAGTTGATAAGTCTTGGACTGGAATGCAAATATCAGTTGGAACTGGCATC
GCGATGAAAAATTGTGCGTAAAACCCAAGGTCACGAGCAGAGATCCGAGTGTCAGAGCGCCAATGGCCGACACGTAATTA
AACCCCC-TCGACGACCGGTA-------GACCGCACCCACCTATAACCTCCTCTCCTCTCCGCCCCACCTCGCAGAGCCG
CCGCCTGTGACCGACCGGAGAGCCAGACGACAAACCGAGCCCACCGCACCCACACCAGCACCAGCACCAGCACCAACTCC
TCCTCCTCCTCTTGCGCGGCTGCAGCTGCCGGCCATGTCGGTGGAGACGGAGCGGAGCTCCACGGAGTCCTCCGCCGCCT
CGGGCCTCGACTTCGAGGACACCGCCCTAACCCTCCGCCTCCCCGGCTCCGACCCCGACCGCAAGCGCGCCTCCACCTCC
GACCCCGACTGCCCCTCCCCGACCGCCGCCGCCTCCGACTCTCCCCCTTCCCCCAAGTACGCGCGCGTGCCTTGCCTTCT
CTCGCTCCTTCCGTCTGAAATTTGGCGCCCATGCTTTTTGAGCTGACATGGTCTCGCTGTGCAGGGCGCAGGTGGTGGGC
TGGCCACCGGTGCGGTCGTTCCGGAAGAACGCCCTCGCGGCCGCGGCCTCGTCCAAGACCAAGTTCGTCAAGGTGGCCGT
CGACGGCGCGCCCTACCTGCGCAAGGTCGACCTCAAGGCTTACGCGGGCTACACAAGCTCTGCCTCCTACGACCAGCTCC
TCGCCACGCTCCAGGACAAGTTCATCTCCCACCTCACCGTCCGTGAGTGCACCGCCGCGACATGCCATGCCTGTGTCTGT
GTGTTAGCTACGTGTTGCTCGCTC-GTGGGTTCTGACGATTTGACTGTGGATGCAGGCAAGCTTGGGAACGAGGAGATGA
AGCTCGTGGACGCGGTGAGCGGGACGGAGTATGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGAGAC
GTCCCCTGGAGGTGAATTTTTTTGGGCCTTTTGTGCTACTTTACAGTTTAAATCCGCATGTCGCTGCATCTCCTGTTGCT
CCTCAGCTATGTCCTTTTGTTTAAGTTCATATATACACTGCTTAATTAGGGTCATGGGTTGAATCGCTAACTGATCAGGT
GCTATAGCATCTCAGGTTCAGAAATCTGGATGGTTTGGTGATCGTGCGTTGTTAGTTTCAGTTTATCTTTGCTTGAGAAA
CGATTAATTTGGGTTTAATGAGTTGTTGATCTGGTAGTGATATATAAGGAACTCGGACCGGGGGGCTGAACATGAAAATT
TCTTACACTGTACCAAGGGATCACGAGATTGCTCCTGGTTTTCACTACTA------------------------------
-----TCTGTTTAACTTAGGATCCATGCCAATTGTTCTTAGT----CTGTATATTTTGTATGAGTCGTGGATCCTGCTAG
TTAAACAGAAATCTCAGAAAAACTTAAAAGAGATGTAAATGATTA-GCGGCGAGTGATGCTCATAAATTAATTTCACATG
CGTGAATTCAGCTGTTCAGTTTCTCGGACATGATTAGGGTTGAAACTAGTGTAGGAGCACTGATATTTGTTTCTGACAGC
AAGCCATTTTCCTTGCTTTCAAACTCACAGAAGACAGAAGTGTTGATTGTCTCTTGTGGAAATGGATCTTCTTACCATCC
TGTGCTGTTTCATGTGTAATGTGAATTGAATGGCTTAGGGAAACAGGACAATAACTGAGAATTGTGCCTACCAGCTCTAG
TTTTGGCCACATTTT-CCTCCAGACTTTTGTATCTATTAGCCGTGCCTCACTTACAGGAGTGCGCTCTTTAATTCATTTT
CCACAGTGTACTCTTATTGTATTAGGAGGGCTCAACAAACTTTCTGTTCGAGAAGAAATTAACAAGTTGAACTTTGCTGC
ATCTTACCACTATCAGATAACCATGTGCTAAATATAAAAGAATTTGGTTGCTTGTTTTTGTTATTAGATTTCGGGCTTCA
TTATGATTCTGTAAAAGGTTGGCTCTAATATGGTACTGATCTGCTATTATTGACCTGCAGAATGTTTGTGGAAACCTGTC
AGCGCATTCGTCTCATGAAAAGCTCTGAGGTCGTCAATCTAGGTACACATAACTCCTATGACCTTGTTTTTCAGACTAGT
GGAACTTATTGTTTTTGTTGTAGATCAACTCAATATTACTGGATAAATCTGGCTGCTCTCTTCTACCTGCAGCACCAAGA
GCTGGTCGGTGAGGCACAATCCTTGCTCCTTTTTCTACAGACCGCTTCAGAGGAAGAAATGTCTTTGCTCAGTGAGGTTC
TTCCGCAAGTTTCCGAGAGAGAAATGTGTACAGCCATCTCTACTTTTTGCCCAGCACGCTATTGAGTTCAGAAAGTGTCG
TAGCTTGTAATTCCACTACCAGTCAGTCAGTAGTATCTACATGTAAGATGGAGAGGTTGTGATGCTTCAGAAATACACCT
GCAGTTCGTTCTTGAAAAATAAGACTGCAGTCCCTGTTCTCCCGAGCTGCTTGCTACTGGAGCATGGTTTTGTGTAACTT
TATGCAAGTGAGGCACCTGGTACAAGAGTCATATAATGCGTCAATT-TTCCTACAAGTTTTGTGCTGTGATTTTGCTATA
TTATGTACTCCTT-------------------CCGTTACTAAATATAAGTCTTTCTAGA---------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TACTGCATTCCAAT
ATGGATTACATACGGAGCAAAATGAGAATCTACACTCTGAACTACGTCATTCCAATATGGATTACATATGGAGCAAAATG
AGAATCTACACTCTAAACTATGTCTATATACAAATA--TGTAGTTTATATTGAAATCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TCGATATAAACACGGCGGATGTCATTGAAATTGCAGTGAATTTCGTCCGCTGAGGGGTCTTATATTTTATTGAATTTTGT
CTGATGAATTAAAAATGTAAAACTAGAACCCTATTATCTTATACTTTACGATGACCTCGTAGCCAATGTCAGGCTGGACG
GCTACTCCTTCGTCATTGTCACCCGACTTGTCGTCGGGCTTGGGGCGGCGGAAGGTGGTGGCGCCACAGCAGGGCTTCCC
GGCGGCCGCCTGACACTCACGGATGATCCTCTCCGCCTCCTCCTGCGCCGTGCACAGTGCGGCCGCGCCCACCGAGGACG
TGGGCTGGGGAAGAGAGCAGCGGTCGTTAGAGGCGTCGTCGTTGGCGGCGGCGGCGATCTCGGTGAGGGACCATTCCTCG
CAGTACCTGGCCATCTTCT
>chr1D_1
TTTTGTTTTGACAAAAGGAGAGAATAGATTGTTGGCAAGTACTCCTACTATTAGTTCCAGCAGTACTGAGTTGTGAG-TA
TTCCTCAAAAACGATGAACA------ATAGATAAATCTTACCACTGACACGCTATAAAA-CGGCGAAGGTAACTAGTACA
GACACGT------------CCAAAGCACTGGGTCCCACAGGTAAAAGAGAAAAGGAAAGAGAGGAGTCGAGCTTGGTACA
AGCTGGAGGCGGAGGGTGGAGAGGGTGGACGGCGTCGCTCTCGCGCAAAGCGTGCGGGCGAGGGCACAGGAGGGAAGCCG
ATTCGATTCCGGCAGCGGCAGGCCCGAATGGAAAGCGAAAGCAAAGGCGAGATGCTGGAATTTAATTAGGTAAAACCGGG
CGGGTGGGGGACACGTCGCCGACAGCCCGGCGACACCCACGTGCTCCCGGCTTTATGGCCTTGTCCCCCCTCCCGTA--C
TTTCGCCGCTGGTACACGCCTTTGCCGGATCGGTGATGCAGGGCGCCGGGCCGTCGGATCGGGATCGGGCGGCGCGGCGG
GGCCGAGTGGACCTGCAGGGTGGCCAACCGGCAGCCCGGGCCCACGCATGGAAAAACGGGCGGCACGAACGTTAATGCTG
CACCA-------CCCCCACCGCTGGATGGATG----GACAAGGACGATGATGACCCGACTTCTCTGTTTCTTTTATTTAC
AAAAATG------ATAAAAATATCCCCGTGGGAATGAGGATTGTGTTTGGAGAAATCCAGGGACGTGCGAATTTACGTTA
TGGACCTCCGCGACTCGGCGGGATGGAGTAAAGTTGATCTGTCTTGGACTGGAATGCAGATATCAGTGGGAAGTGGCATC
GCGACGAAAAATTGTGGGTAAAACCCAAGGTCACGAGCAGAGCTCCGAGTGTCAGAGCGCCAATGGCCGACACGTAATTA
AACCCCC-TCGACGACCGGTAGACCGGTGACCGCACCCACCTATAACCTCCTCTCCTCTCCGCCCCACCTCGCAGAGCCG
CCGCCTGTGACCGACCGGAGAGCCAGACGACAAACCGAGCCCACCGCACCAACACCACCACTC-------------CTCC
TCCTCCTCCTCTTGCGCGGCTGCAGCTGCCGGCCATGTCGGTGGAGACGGAGCGGAGCTCCACGGAGTCCTCCGCCGCCT
CGGGCCTTGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCCGGCTCCGACCCCGACCGCAAGCGCGCCTCCACCTCC
GACCCCGACTGCCCCTCCCCGACCGCCGCCGCCTCAGACTCTCCCCCTTCCCCCAAGTACGCGCGCGTGCCT-GCCTTCT
CTCGCTCCTTCCGTCTGAAATTTGGCGCCCATGCTTTTTGAGCTGACATGGTCTCGCTGTGCAGGGCGCAGGTGGTGGGC
TGGCCACCGGTGCGGTCGTTCCGGAAGAACGCCCTCGCGGCCGCGGCCTCGTCCAAGACCAAGTTCGTCAAGGTGGCCGT
CGACGGCGCGCCCTACCTGCGCAAGGTCGACCTCAAGGCTTACGCGGGCTACACAAGCTCTGCCTCCTACGACCAGCTCC
TCGCCACGCTCCAGGACAAGTTCATCTCCCACCTCACCGTCCGTGAGTGCACCGCCGCGACATGCCATGCCTGTGTCTAT
GTGTTAGCTACGTGTTGCTCTCTCAGTGGGTTCTGACGATTTGACTCTGTATGCAGGCAAGCTTGGGAACGAGGAGATGA
AGCTCGTGGACGCGGTGAGCGGGACGGAGTATGTGCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGAGAC
GTCCCCTGGAGGTGAAATT-TTTGGGCCTTTTGTGCTA-TTTACAGTTAAAATCCGCATGCCGCTGAATCTCGTGTTGCT
CGTCAGCTATGTCCCTTTGTTTAAGTTCATGTATACACTGCTTAATTAGGGTCATGGGTTGAATCGCTAACTGATCAGGT
GCTATAGCATCTCAGGTTCAGAAATCTGGATGGTTTGGTGAGCGTACGCTGTTAGTTTCAGTTTATCTTTGCTTGAGAAA
CGATTAATTTGGGTTTAATGGGTTGTTGATCTGGTAGTGATATATAAGGAACTCGGACCCGGTGTCTGAACATGAAAATT
TATTAAACTGTACCAAGGGATCACGAGATTGCTCCTGGTTTTCACTACTATGTGATGTTCCTTTTGGGTTATCAGTTGGC
TATTGTCTGTTTAACTTAGGATCCATGCCAATTGTTCTTAGTTAGCCTGTATATTCTGTATGAGTCGTCGATCCTGCTAG
TTAAACAGACATCT------------------------------------CGAATGATGCTCATAAATTAATTTCACATG
CGTGAATTCAGCTGTTCAGTTTCTTGGACATGATTAGGGTTGAAACTAGTGGAGGAGCATTGGTATTTGTTTCTGACAGC
AAGCCATTTTCCTTACTTTCGAACTCACACAAGACAGAAGTGCTGA-------TTGTGGAAATGGATCTTCTTACCATCC
TGTGCCGTTTCATGTGTAATTTGAATTGAATGGCTTAGGGAAACTGGACAATAATTGAGAATTGTGCCTATCAGCTCTAG
TTTTGGCCTCATTTTTCTTCCAGACTTTTGTATCTATTAGCCGTGCCTCACTTACAGGAGTGCGCTCTTTAATTCATTTT
CCACAGTGTACTCTTATTGTATTAGGAGGGTTCAACAAACTTTCTGTTTGAGAAGAAATTGACAAGTTGAACTTTGCTGC
ATCTTACCACTATCAGATAACCATGTGCTAAATATAAAAGAATTTGGTTGCTTGCTCTTGTTATTAGATTTCGGGCTTTA
TTACGATTCTGTAAAAGGTTGGCTCTAATATGGTACTGATCTCCTATTATTGACCTGCAGAATGTTTGTGGAGACCTGCC
AGCGCATTCGTCTCATGAAAAGCTCTGAGGTTGTCAATCTAGGTACACATAACTCCTCTGACCTTGTTTTTCAGACTAGT
GGAACTTATTGTTTTTGTTGTAGTTCAACTCAATATCACTGGATAAATCTGACTGCTCTCTTCTACCTGCAGCACCAAGA
TCTGGTCGGTGAGGCACAATCCTTGCTCCTTTTTCTACAGACCACTTCAGAGGAAGAAATGTCTTTGCTCAGTGAGGTTC
TTCCGCAAGTTTCCGAGAGAGAAATGTGTACAGTGATCTCTACTTTTTGCCCAGCACGCTATTGAGTTCAGAAAGTGTCG
TAGCTTGTAATTCCATTACCAGTCAGTCAGTAGTATCTACATGTAAGATGGAGAGGTTGTGATGCTTCAGAAATACACCT
ACAATTCATTCTTGAAAAATAAGACCGCAGTCCGTGTTCTCCCGAGCTGCTTGCTACTGGAGCATGCTTTTGTGTAACTT
TATGCAAGTGAGGCACCTGGTACAAGAGTCATATAATGCGTCAATTTTTCCTACAAGTTTTGTGCTGTGATTTTGCTATA
TTATGTA-------------------------------------------------------------------------
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>chr1B_65
TGGTGTAGTATTTTTCA---------------------------------------------------------------
------AAAAACAATGAACA------ATAGATAAATCTTACCACTGACACGCTGTAAAATCGGCGAAGGTAACCACTATA
CGTACTAGTACAGACAAGGCCAAAGCACTGGGTCCCACAGGTAAAAGAGAAAAGGAAAGAGAGGAGTCGAGGTTGGTACT
AGCTGGAGGCGGAGGGT---------GGACGGCGTCGCTCTCGCGCAAAGCGTGCGGGCGAGGGCAGAGGAGGGAAGCCG
ATTCGATTCCGGCAGCGGCAGGGCCGAATGGAAAGCGAAAGCAAAGGCGAGATGCTGGAATTTAATTAGGTAAAACCGGG
CGGGTGGGGGACACGTCGCCGACAGCCCGGCGACACCCACGTGCTCCCGGCTTTATCGCCTTGTCCCCCCTCCCATACGC
TTTCGCCGCTGGTACACGCCTTCGCCGGATCAGCTATGCAGGGCGCCGGACCGTCGGATAGGGATCGGGCGGTGCGGCGG
CGCCGAGTGGACCTGCAGGGTGGCCAACCGGCAGCCCGGGCCCACGCATGGAAAAACGGGCGGCACGAACGTTAATGCTG
CACCA--------CCCCACCGCTGGATGGATGCATGGACAAGGACGATGATGACCCGATTTCTCTGTTTGTTTTTTTAGT
ACATACAAGAAGAAG-AAAAAATCCCCGTGGGAATGGGGATTGCGATGAGAGAAATCCAAGGAGGTGCGAATTTACGTTA
TGGACCCCCGCGACTCGGCGGGATGGAGCAAAGTTGATCTGTGTTGGACTGGAATGCAAATATCGGCGGGGACTGGCATC
GCGACAAGAAATTGCGGGTAAAACCCAAGGTCACGAGCAGAGCTCCGAGTGTCAGAGCGCCAATGGCCGACACGTAATTA
AACCCCCCTCGACGACCGGTAGACCGGTGACCGCACCCACCTATAACCTCCTCCCCTCTCCGCCCCACCTCGCAGAGCCG
CCGCCTGTGACCGACCGGAGAGCCAGACGACAAACCGAGCCCACCGCACCAACACCAA---------------------C
TCCTCCTCCTCTTGCGCGGCTGCAGCTGCCGGCCATGTCGGTGGAGACGGAGCGGAGCTCCACGGAGTCCTCCGCCGCCT
CGGGCCTCGACTTCGAGGACACCGCCCTCACCCTCCGCCTCCCCGGCTCCGACCCCGACCGCAAGCGCGCCTCCACCTCC
GACCCCGACTGCCCCTCCCCGACCGCCGCCGCCTCCGACTCTCCCCCTTCCCCCAAGTACGCGCGCGTGCCT-GCCTTCT
CTCGTTCCTTCCGTCTGAAATTTGGCGCCCATGCTTTTTGAGCTGACATGGTCTCGCTGTGCAGGGCGCAGGTGGTGGGC
TGGCCACCGGTGCGGTCGTTCCGGAAGAACGCCCTCGCGGCCGCGGCCTCGTCCAAGACCAAGTTCGTCAAGGTGGCCGT
CGACGGCGCGCCCTACCTGCGCAAGGTCGACCTCAAGGCTTACGCTGGCTACACAAGCTCTGCCTCCTACGACCAGCTCC
TCGCCACGCTCCAGGACAAGTTCATCTCCCACCTCACCGTCCGTGAGTGCACCGCCGCGACATGCCATGCCTGTATCTGT
GTGTTAGCTACGTGTTGCTCTCTC-GT-GGTTCTGACGATTTGACTGTGGATGCAGGAAAGCTTGGGAACGAGGAGATGA
AGCTCGTGGACGCGGTGAGCGGGACGGAATATGTTCCGACGTACGAGGACAAGGACGGCGACTGGATGCTCGTCGGAGAC
GTCCCCTGGAGGTGAATTT-CTTGGGCCTTTTGTGCTATTTTACATTTAAAATCCGCATGCCGCTGCATCTCGTGTTGCT
CGTCAGCTATGTCCTTTTGTTTAAGTTCATATATACACTGCGTAATTAGGGTCGTGGGTTGAATCGCTAACTGATCAGGT
GCTATAGCATCTCAGGTTCAGAAATCTGGATGGTTTGGTGATCGTACGCTGTTAGTTTCAGTTTATCTTTGCCTGAGAAA
CGATTAATTTGGGTTTAATGAGTTGTTGATTTGATAGTGATATATAAGGAACTCGGACCCGGTGGCTGAACATGAAAATT
TCTTACACTGT-CCAAGGGATCACGAGATTGCTCCTGGTTTTCACTACTATGTGATGTTCCTTTTGGGTTATCAGTTGGC
TATTGTCTGTTTAACTTAGAATCCATGCCAATTGTTCTTAGTTAGCCTGTATATTTTGTATGAGTCGTGGATCCTGCTAG
TTAAACAGAAGTCTCAGAAATTTTTAAAAGAGATGTAAAATGATTGGCGGCGAATGATGCTCATAAATTAATTTCACATG
CGTGAATTCAGCTGTTCAGTTTCTCGGGCATGATTAGGGTTGAAACTAGTGGAGGAGCACTGATGTTTGTTTCTGACAGC
AAGCCATTTTCCTTACTTTCGAACTCACAGAAGACAGAAGTGCTGA-------TTGTGGAAATGGATCTTCTTACCATCC
TGTGCTGTTTCATGTGTAATTTGAACTGAATGGCTTAGGGAAAGTGGACAATAATTGAGAATTGTGCCTACCAGCTCTAG
TTTTGGCCTCATTTTTCCTCCAGACTTGTGTATCTATTAGCCGTGCCTCACTTACAGGAGTGCGCTCTTTAATTCATTTT
CCACAGTGTACTCTTATTGTATTAGGAGGGT-CAACAAACTTTCTGTTTGAGAAGAAATTGACAAGTTGAACTTTGCTGC
ATC-TACCACTATCATATAACCATGTGCTAAATATAAAAGAATTTGGTTGCTTGTTCTTGTTATTAGATTTCGGGCTTCA
TTACGATTCTGTAAGAGGTTGGCTCTAATATGGTACTGATCTGTTATTATTGACGTGCAGAATGTTTGTGGAGACCTGCC
AGCGCATTCGTCTCATGAAAAGCTCCGAGGTTGTCAATCTAGGTACACATAACTCCTCTGACCTTGTTTTTCAGACTAGT
GGAACTTATTATTTTTGTTGTAGTTCAACTCAATATCACTGGATAAATCTGACTGCTCTCTTCTACCTGCAGCACCAAGA
GCTGGTCGGTGAGGCACAATCCTTGCTCCTTTTTCTACAGACCGCTTCAGAGGAAGAAATGTCTTTGCTCAGTGAGGTTC
TTCCGCAAGTTTCCGAGAGAGAAATGTGTACAGCCATCTCTACTTTTTGCCCAGCACGCTATTGAGTTCAGAAAGTGTCG
TAGCTTGTAATTCCACTACCAGTCAGTCAGTAGTATCTACATGTAAGATGGAGAGGTTGTGATGCTTCAGAAATACACCT
ACAGTTCGTTCTTGAAAAATAAGACTGTGGTCCCTGTTCTCCCGAGCTGCTTGCTACTGGAGCATGGTTTTGTGTAACTT
TATGCAAGTGAGGCACCTGGTACAAGAGTCGTGTAATGCGTCAGTTTTCCTACCAAGTTCTGTGCTGTGATTTTGCTATA
TTATGTACTCCTTCTGTTACTAAATACTCCCTCCGTTCCTAAATATAAGTCTTTTTAGACATTTCAAATGGACTAGTACA
ACATACAGATGTATTTAGACATATTTTAGAGTATAGATTCACTCATTTTGTTCCGTATGTAGTCACTTGTTGGAATCTCT
AAAAAGACTTGTATTTAGGAACGGAGGGAGTATAAGTCTTTCTAGAGGAGTATAAGTCTTTTTAGATACTATATTTCAAT
ATGAACTACATACGGAGCAAAATGA------------------------------------------------------G
AGAATCTACACTCTGAACTACGTCTATATACATCTGTGTGTAGTTTATATTGAAATCTCTAGACTTGTATTTTATTGAAA
TCTCTAAAAAGACATATTTAGAAATGGATGGAGTAAAGACATCTTCAACTTCTGTGTGTAGTTCATATTAAAATCTCTAG
AAAGACTTATATTTTATTGAAATCTCTAGAAAGACTTATATTTAGAAATGGAGGGAGTAAGGGCAACATCTTCAACGGCA
ATCGCAAAAAACCTCCTACATCCGTCCCCGGACGGGGGGCAGTCTGCGGGCATGGATGCGGGAGGTCGACATCCAACGCT
AGCCGTATACATTTTCACAATAACTCAAACCAATCGAATGAAATTTGTGCAAACACGGTGAA----------------TT
TTGATATAAACATGACGGATCTTATTGAAAGTACGATAATTTGTACATATAACTCGGACTATATTTC-----------GT
CTGGTGAATCAAAAACCTAAAACTAAAACCCTATTATCCTATACTTCACGCTGACCTCGTAGCCAATGTCAGGCTGGCTG
GCTGCTACTTCGTCATCGTCGACCAACTCGTCGTCGGGCTTGGGGCGGCAGAAGGTGGTGGCGCCACAGCAGGGCTTCCC
GACGGCCGCCTGACGCTCACG-----------------------------------------------------------
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>SNPs
-----------------------S-----------------------------------------------S-----S--
-SS-----------------SSSSSS----------------S-----------------------------------SS
---------------------------S----------------------------------------------------
-------------------------------------------------------------------S------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----S-----------------------------------
--------------------------------------------------------------------------------
-----SSSSSSS--------------------------------------------------------------------
--S-----S--SS-------------------------------------------------------------------
------------------S-------------------SS---------------------------S------------
----S-----------S-------------------------S-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S------S---SSSSSSSSSSSSSSS----
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
------------------------------------------------------------------------S-------
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--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------S---------S-----------S-----------S-------
-S------------------------------------------------------------------------------
---------------------------------------------S--S-------------------------------
-----------------------------------------------------------S--S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------SSS----------------SSSS-S--------S--------------------------
---------------------------------------------------S----------------------------
--------------S-----S---------------------S---SSSSSSS---------------------------
--------------------S-----------------------S---------S-------------------------
--------S-----------------------------------------------------------------------
------------------------------S-----------------S-----------S-------------------
--------------------------------------------------------S-----------------------
---S--------------------------------------------------------------------S-----S-
-------------------------------S-------------------------S----------------------
-----------------------S------------S--------------S----------------------------
--------------------------------------------------------------------------------
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S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S----------------S-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------SS---S----
---S-S-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------S-----S-----------SS-S---------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S----------S-S-----S-S-------S-S-SS-S-S--SSSSSSSSSSSSS--S--SSSS--SSSSSSSSSSSS--
---S-----S-----SS--------S------------S-------S---S--------------------------SS-
---S--S---------S---SS--S---S--------------------S------------------------------
-S------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_647
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-------------------------------------------------------------------AACGTTAATGCTG
CACCACC-------------------------------------------------------------------------
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>reverse_2361
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GATTAGCGGCGAGTGATGCT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_2049
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGGTTTGGTGATCGTGCGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_2959
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TC
AGCGCATTCGTCTCATGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_2649
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ACCAGCTCTAG
TTTTGGCCA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_4407
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CCTTCGTCATTGTCACCCGA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
