>input_sequence_33288
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----------------------------------------------------------------------ATACATAAAC
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---AAAGAGTACTACCTGTCCTGTCAGTCAACTTGTGTAGCAATCCATCTACGCGATACTTTACCAGTTCAGTTCAATCT
CCACGGCCAAGAAATGGCCCTGCAAATTGCGTCGCCCCCCTTTTTTTTCTGGGCACCAAACAAGCAAGAAACCCTAGCTG
TAGCATCACAAGGACAGGTTCTAGTTTCTGTCAGATATGCTCAAGAACGTAGGTAGGTTGTTCAGCTTCCGATAACCTCC
CACCCGCAATCTACTACTGGCAGCTGTTCATGTTCTGGGCTGCTTGGATCCCCCTTCTTGGCTGATAGTGAATTGCAATT
TTGGTGCTCGATTTCTT------CTTTGCTATCTTGTCCTGAT--------GTAGCACTTTACTTGCCTGCAGGATCACG
CCAGGTATCGACTGACTGCCGGATCACTGTAACAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCCTGGGCGAGCG
CCTCAAGATCAGCGGCGCGGAAGTCAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTCT
TCCAAGGCCAGAACATGGCCGACAAGATTGTTGACGAGGCCACCTTGGAGACCATGGACGGCCCTGATTGGGCTACCAAT
CTTGAGATATGCGATATGGCCAACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATCAAGAGGCGAATCATGCT
CAAGAGCCCGAGGGTGCAGTATCTGGCTCTTGTCCTCCTCGAGACCATTGTCAAGAACTGCGAGAAGGCTTTCTCCGAGA
TTGCTGCGGAGCGGGTCCTTGATGAAATGGTGAAGCTTATTGATGACCCGCAGACTATAGTCAACAACAGAAACAAGGCG
CTCATGCTTATTGAAGCATGAGGGGAGTCAGGAGAGGAGCTCCGCTACCTTCCCGTGTATGAAGAAACATACAAGGTACT
TATTGATGATCAACATACACGGAATGCTCTCTGGTTAAACTAGCTGATTTTACCGGAACACAGTGCTTTACTGCTGATCT
GCCAAGAATCTGAGAAAGCTTATTTAGTTCCTTTTGAACTTTGGTTAATTGTGGATAACTAGATATTAAGTTACTTATGT
TAATTGGAGGGATAATTAGGATGCATTTTCATAAACATTCCTTTAGTGCAGTTT--ACACTGCATCCATAGCACAATGTT
GTGCCTGAAACTTGTATCATTAGACTGCCTGAAACTTATAT------------------------CATTTGGTTTTCGTT
GCAGAGCTTAAGATCTAGGGGAATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTT
CAGTACCTGCAGCTGAACCATATTCTGATGCAGCACAGGAAGGGTATCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTC
CGTGCTGCCCCTTCTGTACAAGTCGACGAGGCTTTTGAGGTGGCTCGCAATAGCGTTGAACTTCTGTCCACAGTGCTATC
ATCATCTCCACAAAAAGAGGCTCTAGAGGTTAGTCTTTTCTTTTGCCAGTCAATTAGAAACTCCAGCTTAGGTGAGTAAT
TCATGTCGTTCAGCGTGGAATCTGTTATATAGGCAATGTGCAGTCTGTGATGTAGGCATCTCAAAAGGCAGGGTTGAAGT
TTTGTTATCTTTATACATGACTA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TATGTTAAGGAAATTATATATTGGTTGCTAGCATTTTTTACATTTTAATCTTAATAGTAA
-ATACAGCAACAATGGCCCTGGCCAATCAACCTGTTATCCCTTATTACCTCATCACAGTCTCGGTGCAGAGCAGTATCTG
AAAGTA--------------------------------------------------------------------------
---------------------AGTAGTTAACTGACAGTTTGTT-AAGAACTTCATTC-----------------------
------------------------------------------------------------TATTATTTTTATCTGCTATT
CAGGTATCTA--ATTCAATATTGTATTAGTACGATGCTATCATCAACTCCCTGTCCTGATTTTCCACTGCACCTCACATA
CATGCAGGATGACTTGACTACCACCCTGGTCCAGCAATGCCAACAGTGTCAATACACAATCCAGAGAATCGTCGAGACTG
CAGGTGATAACGAGGCTCAACTCTTCGAGGCACTGAGCATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGAC
CTCAAGGAGCCCATCGTCGCAGAGCCTGAGCCAGAACCAGCAATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACG
CGCTGTTGGCAAAGACACCCCCGCAAGGAAATCAGCTGGGTCCGGTGGTCGCTCTAGTGGCGGGGATGACTTGCTTCAGG
ATCTCGACGACATGATCTTCGGTAAGAAAGCCGGCACCTCCTCCCAGCAGGAAAGGACTCCCCGGAAGGAGAAGAAGGAC
GATTTCATCGGCTTGTGATCAACGGGTATATATGTATCTGTCCGGCTGAAACTTGTC-----------------------
--------------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G198600
AATTTA-TTACTGAAGCATTTGGATTTGGACGGCGACAGTAGGAAGATATGAATAGGTGTGGAAGAAAGATTATTTGTAT
GCGTGAGCGCGTTGAATTTTATAGGTC-----CAGAGCACGCGGTCGCAGGCAGGCAGGGCTCTGAAGACGCGGCAAGCC
AACACAGCTGGAGTCTGAATCC---TCCTGATCCTGAAAGAAGGAAGATTGATTAGGCGAGCATGGTTGATTTTCTCTTG
CAACAAAGCTCGATTTCCTTCCTCATGGAATTCTGGCTGATCTTACAGTTGAGTTGG----ATCACCTGATGACACGATC
ACCAGGATTACGAAGACTATCATATCAGTAGATAATGAAGGATAATCAAATGATGACCACGCAATGTTAATAATTGCTGC
TCTAATTGGTTAGCGTACGTGACCTTTGCCCGTCCAATTGGGTTTGCACCATTCCTTCCACCCACAGGAAGGCGAAAAGT
AGAAGAGGGAAAACAGTAATCTAAAAAAAAAGAAAAAAGTAGTAGAAGAGGGAAAAAGGAGAAGTGGGGACGGAAGGAGC
TCCAAGG---TGGAATCCATTCCATCCTGAGACCTGAAATCCATCCATCACGCCCTTGGCCTTGGCAGCCGCAGCAGACG
ACTCGCCTACTCTGCGCCTGCCTGAGCCGGGGAA--GGAGGAGGAGGAGGAGGGAGCCGCCGACGAATTGGGAACAAGGT
GAGCCCCGACCCCGACCTCTGTCACCGCCGTCGTCGCTCTTCGCTTCGGGCTGCTGATTTATCCACCCTTCTCAGCCT--
--GCCTACTCTTCTTCTTGC--GCTTCCCTGCTACTAACACTGCTTCTGCCGCCGCCGCCGC------CCCCAATCCCCA
TATCCAACTCAAAATTGTCCATCGTATGTATACTGCTCGTCTAAGCGCGATCAAACCACCACCGTCCCCCGATTTCCGTT
TCTTTTCTTGCCAACTTGCGATGTGTTCCCTTCCCTTGTAAATCAATCGTACATACACAAAAAAAACTAAATACATAAAC
--------------------------------------------------------------------------------
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---AAAGAGTACTACCTGTCCTGTCAGTCAACTTGTGTAGCAATCCATCTACGCGATACTTTACCAGTTCAGTTCAATCT
CCACGGCCAAGAAATGGCCCTGCAAATTGCGTCGCCCCCCTTTTTTTTCTGGGCACCAAACAAGCAAGAAACCCTAGCTG
TAGCATCACAAGGACAGGTTCTAGTTTCTGTCAGATATGCTCAAGAACGTAGGTAGGTTGTTCAGCTTCCGATAACCTCC
CACCCGCAATCTACTACTGGCAGCTGTTCATGTTCTGGGCTGCTTGGATCCCCCTTCTTGGCTGATAGTGAATTGCAATT
TTGGTGCTCGATTTCTT------CTTTGCTATCTTGTCCTGAT--------GTAGCACTTTACTTGCCTGCAGGATCACG
CCAGGTATCGACTGACTGCCGGATCACTGTAACAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCCTGGGCGAGCG
CCTCAAGATCAGCGGCGCGGAAGTCAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTCT
TCCAAGGCCAGAACATGGCCGACAAGATTGTTGACGAGGCCACCTTGGAGACCATGGACGGCCCTGATTGGGCTACCAAT
CTTGAGATATGCGATATGGCCAACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATCAAGAGGCGAATCATGCT
CAAGAGCCCGAGGGTGCAGTATCTGGCTCTTGTCCTCCTCGAGACCATTGTCAAGAACTGCGAGAAGGCTTTCTCCGAGA
TTGCTGCGGAGCGGGTCCTTGATGAAATGGTGAAGCTTATTGATGACCCGCAGACTATAGTCAACAACAGAAACAAGGCG
CTCATGCTTATTGAAGCATGAGGGGAGTCAGGAGAGGAGCTCCGCTACCTTCCCGTGTATGAAGAAACATACAAGGTACT
TATTGATGATCAACATACACGGAATGCTCTCTGGTTAAACTAGCTGATTTTACCGGAACACAGTGCTTTACTGCTGATCT
GCCAAGAATCTGAGAAAGCTTATTTAGTTCCTTTTGAACTTTGGTTAATTGTGGATAACTAGATATTAAGTTACTTATGT
TAATTGGAGGGATAATTAGGATGCATTTTCATAAACATTCCTTTAGTGCAGTTT--ACACTGCATCCATAGCACAATGTT
GTGCCTGAAACTTGTATCATTAGACTGCCTGAAACTTATAT------------------------CATTTGGTTTTCGTT
GCAGAGCTTAAGATCTAGGGGAATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTT
CAGTACCTGCAGCTGAACCATATTCTGATGCAGCACAGGAAGGGTATCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTC
CGTGCTGCCCCTTCTGTACAAGTCGACGAGGCTTTTGAGGTGGCTCGCAATAGCGTTGAACTTCTGTCCACAGTGCTATC
ATCATCTCCACAAAAAGAGGCTCTAGAGGTTAGTCTTTTCTTTTGCCAGTCAATTAGAAACTCCAGCTTAGGTGAGTAAT
TCATGTCGTTCAGCGTGGAATCTGTTATATAGGCAATGTGCAGTCTGTGATGTAGGCATCTCAAAAGGCAGGGTTGAAGT
TTTGTTATCTTTATACATGACTA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TATGTTAAGGAAATTATATATTGGTTGCTAGCATTTTTTACATTTTAATCTTAATAGTAA
-ATACAGCAACAATGGCCCTGGCCAATCAACCTGTTATCCCTTATTACCTCATCACAGTCTCGGTGCAGAGCAGTATCTG
AAAGTA--------------------------------------------------------------------------
---------------------AGTAGTTAACTGACAGTTTGTT-AAGAACTTCATTC-----------------------
------------------------------------------------------------TATTATTTTTATCTGCTATT
CAGGTATCTA--ATTCAATATTGTATTAGTACGATGCTATCATCAACTCCCTGTCCTGATTTTCCACTGCACCTCACATA
CATGCAGGATGACTTGACTACCACCCTGGTCCAGCAATGCCAACAGTGTCAATACACAATCCAGAGAATCGTCGAGACTG
CAGGTGATAACGAGGCTCAACTCTTCGAGGCACTGAGCATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGAC
CTCAAGGAGCCCATCGTCGCAGAGCCTGAGCCAGAACCAGCAATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACG
CGCTGTTGGCAAAGACACCCCCGCAAGGAAATCAGCTGGGTCCGGTGGTCGCTCTAGTGGCGGGGATGACTTGCTTCAGG
ATCTCGACGACATGATCTTCGGTAAGAAAGCCGGCACCTCCTCCCAGCAGGAAAGGACTCCCCGGAAGGAGAAGAAGGAC
GATTTCATCGGCTTGTGATCAACGGGTATATATGTATCTGTCCGGCTGAAACTTGTCATAAAGGTGTTGCGTGCTCAGTG
CATTTCCAAACTATGATACAGCTTTGTGCTTGCGCGTCTATCTTCTCCTGTATCCCGGGGATTGCTGTACAGTGGTAGAT
GTCTAACGTGGCAGTGAGTTTCATGTGACATTCCTTTTCTTTCTGTGATTGTTATGCGGGCCAAATTATTGGAATGCTGG
GGCTGCTCACATGCATCGCATGGGTAAGTATATAAGTTTGTACAACGTTCCAGTGGTACA----------AAGACGGGGT
CTGCTCGTTCATCACAATTTTTGAAATCTGGAGTATATATTTTGTCA-CCAAGT--------------------TTCAGC
GACGAACGAAGGCAGAACTATGCTTC----TCTTCATTCATGTTCAGAATCGACAGGCTATAACATGACGCAGTAGCTCG
CTTACAGGCCAGGAATAGCGC------CCTTGGCACGCACA---ACAACGCCAACGGGCCTTCACGCTGATCACTGGCAC
CGGCCCATAGAGATTAGGTCGTCAGGGAACGACTAACTGGAGGCTACCTGTTTCCCACCCAAAAAAAAAACTGGAGGGTA
CCTTCCCTAAAAAAAAAGAAAAAAAATGGAGGTACCCCTTCGCGGGTGATCTCCAGCGGTCACTCGGGAGCGCACCGTGC
AACATGTGGTGGTGCGTCCAGCTGCCGCCATGTGTCACACACTGAACGCACCCATAGAGAAGTTTTTTTTC-ACGTGTTT
TAGAATTTCTTCTTCATTTTTTGGAGTTTTTCGATTTTGCATGGTCTTTTTTAATTTTTT------------------TC
TCGCATGAAGCACACTGCGTGAAAAACATAGACGTGCTTCATGATGAAGCACAACACACTTGTGTTCTACAGAAAAGCAC
AACCGTGCTTTGGTGTGAAGCACATTTGTGCTTTTCACAAGTGTATCTTTTGGAAAGTGAAGTACGGTTGTATTTCTCAA
AAGTGGAGAATACAGTTCATAAAAAAGAACAACGGTGCTTGGCGTGAAGCACATATGTGCTTTTCAAAAAATGAAAAGCA
>chr1B_1
AATTTATTTACTGAAGCATTTGGATTTGGACGGCGACAGTAGGAAGATATAAATAGGAGTGGAGGAAAGAT---------
--GTGAGCGCGTTGAAATTTATAGGTCCAGAGCAGAGCACGCGGTCGCAGGCAGGCAGGGCTCTGAAGATGCGACAAGCC
AACACAACTGGAGTCTGAATCCTCCTCCTGATCCTGAAAGAAGGAAGATTGATTAGGCGAGCATGGTTGATTTTCTCTTG
CAACAAAGCTCGATTTCCTTCCTCAGGGAATTCTGGCTGATCTTACAGTTGAGTTTGATAAATCAGCTGATGACACGATT
ACCAGGATTATGAAGACTATCATATCAGTAGATAATGAAGGATAATCAAATGATGACCACACAATGATAACAATTGCTGC
TCTAAC-----AGCGTACGTGACCTTTGCCCGTCCAACTGGGTTTGCACCATTCCTTCCACCCACAGGAAGGCGAAAAGT
AGAAGAGGGAAAACAGCAATCTCAAAAAAAAGAAAAA-GTAGTAGAAGAGGGAAAAAGGAGAAGTGGGGACGGAAGGAGC
TCCAAGGTGATGTAATCCATTCCATCCTGAGACCTGAAATCCATCCATCACGCCCTTGGCCTTGGCAGCCGCAGCAGACG
ACTCGCCTACTCTGCGCCTGCCTGAGCTGGGGCA--GAAGGAGGAGGAGGAGGGAGCCGCCGTCGGATTGGGAACAAGGT
GAGCCCCGACCCCGATCTCTGTCACCGCCGTCATCGCTCTTCGCTTCGGGCTGGTGATTTCTCCACCCTCCTCAGCCTGC
CTGCCTACTCTTCTTCTTGC--GCTTCCTTGCTACTAACACTGCTTCTGCCGCCGCCGCCGC------CCCCAATCCCCA
TATCCAACTCAAAATTGTCCATCGTATGTATACTGCTCGTCTAAACGCGATCAAACCATCATCGTCCCCCGATTTCCGTT
TCTTTTCTTGCCAACTTGCGATGTGTTCCCTTCCCTTGTAAATCAATCGT------ACAAAAAAAACTAAATACATAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TAAAGAGTACTACCTGTCCTGTCAGTCAACTTGTGTAGCAATCCATCTACGCGATACTTTACCAGTTCAGTTCAATCT
CCACGGCCAAGAAATGGCCCTGCAAGTTGCGTCGCCCCCCTTTTATTTCTGGGCACCAAACAAGCAAGAAACCCTAGCTG
TAGCATCACAAGGACCGGTTCTAGTTTCTGTCAGATACGCTCACG----------------------------AACTTCC
CACCCGCAATCTACTACTGGCAGCTGTTCATGTTCTGGGCTGCTTGGATCCCC---CTTGGCTGATAGTGAATTGCAATT
TTGGGCTCGATTC---TTCTTTGCTATGTTATCTTGTCCTCGTCTCCTAACGTAGCACTTTACTTGCCTGCAGAATCACG
CCAGGTATCGACTGACTGCCGGATCACTGTAACAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCTTGGGCGAGCG
CCTCAAGATCAGTGGCGCGGAAGTTAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTTT
TCCAAGGCCAGAACATGGCCGACAAGATTGTTGACGAAGCCACCTTGGAGACCATGGACGGCCCTGATTGGGCTACCAAT
CTTGAGATATGCGATATGGCCAACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATAAAGAGGCGAATCATGCT
GAAGAGCCCGAGGGTGCAGTATCTGGCTCTTGTCCTCCTCGAGACCATTGTCAAAAACTGCGAGAAGGCCTTCTCCGAGA
TTGCTGCGGAGCGGGTCCTTGATGAAATGGTGAAGCTTATTGATGACCCACAGACTATAGTCAACAACAGAAACAAGGCG
CTCATGCTTATTGAAGCATGGGGAGAGTCAGGAGAGGAACTCCGCTACCTTCCCGTGTATGAAGAAACTTACAAGGTACT
TATTGATGATCATCATACACGGAATGCTCTCTGGTTAAACTAGCTGATTTAATCGGAACACAGTGCTTTACTGCTGATCT
GCCAAGAATCTGAGAAAGCTTATTTAGTTCCTTTTGAACTTTGGTTAATTGTGGATAACTAGACATTAAGTTACTTATGT
TAATTGGGGGGATAATTAGGATGCATTTTCATGAACATTCCTTTAGTGCAGTTTACACACTGCATCCGTAGCACAATGTT
GTGCCTGAAACTTATATCATTGCTTCTGGCCAACTAGCACTGTTAAACATGTGGGTTTCAGTTAACATTTGGTTTTCGTT
GCAGAGCTTAAGATCTAGGGGAATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTT
CAGTACCTGCAGCTGAACCATATTCTGATGCAGCACAGGACGGGTACCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTT
CGTGCTGCCCCTTCTGTACAAGTCGACGATGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACAGTGCTATC
ATCATCTCCACAAAAAGAGGCTCTAGAGGTTAGTCTTTTCTTTTGCCGGTCAAATAGAGACTCCAGCTTAGGTGAGTAGT
TCATGTCATTCAGCGTGGAATCTGTGATGTAGGCAATGTGCAGTTTGTGACGTAGGCATCTCAAAAGGCAGGGTTGA-GT
TTTGTTATCTTCATACATGAATA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TATGTTAAGGAAATTATATATTGGTTGCTAGCATTTGTTACATTTAGTGGTCTTTC-TAG
TATACTGCAACAATGGCCCTGGCCAATCAACCTGTTATCCCTTATTACCTCATCACAGTCTCGGTGCAGAG-AGTATCTG
AAAGTA--------------------------------------------------------------------------
---------------------AGTAGTTAACTGACAGTTTGTT-AAGAACTTCA-TTCTACTCCCTCTGTAAAGAAATAT
GAGAGCGTTTAGATCACTAAAGTAGTGATCTAAGCTCTCTTATATTTCTTACGGAGGGAGTATTATTTTTATCTGTTTAT
TCAG-ATCTA--ATTCAATATTATACTAGTACAATGCTATCATCAACTCCGTATCCTGATTGTCTACTGCACCTCACATA
CATGCAGGATGACTTGACTACCACCCTGGTCCAGCAATGCCAACAGTGTCAATACACAATCCAGAGAATCGTCGAGACTG
CAGGTGATAACGAGGCTCAACTCTTTGAGGCACTGAGCATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGAC
CTCAAGGAACCCATCGTCGCAGAGCCTGAGCCAGAACCAGCAATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACG
CGCTGTTGGCAAAGACACCCCCGCGAGGAAATCAGCTGGGTCCGGTGGCCGCTCTAGCGGCGGGGATGACTTGCTTCAGG
ATCTCGACGACATGATCTTCGGTAAGAAAGCCGGCACCTCCTCCCAGCAGGAAAGAACTCCCCGGAAGGAGCAGAAGGAC
GACTTCATCGGCTTATGATCAACGGGTATATA--TATCTGTCCGGCTGAAACTTGTCATAAAGGTGTTGCGTGCTCAGTG
CATTTCCAAACTATGATACAGGTTTGTGCTTGCGCGTCTATCTTCTCCTGTATCCCGGGGATTGCTGTACAGTGGTAGAT
GTCTGACGTGGCAGTGAGTTTCATGTGGCACTCCTTTTCTTTCTATGATTGTTATGCGGGCCAAATTATTGGAATGCTGG
GGCTGCTCTCATGGATCGCATGGGTAAGTATATAAGTTTGTACAGCG-TCCAGTGGTACA----------AAGACGGGGT
CTGCTCGTTCATCACAATTTTCGAAATCTGGAGTATATATGTTGTCA-CCAAGTTATTTTGAAGACTGAAAGAATTCAGC
GACGCACGAAGGCACTGGAGGGTACCTTCCACTA----------------------------------------------
--------------------------------------------------------------------------------
---------------------------AACAAAAAGCTGGAGGGTACCTACCA-----CCAAACAAAAAACTGGAGGGTA
CCTTCCCTAAAAAAAGG--AAAAAAAAGGAGGTACCTCTTCGCGGGTGATCTCCAGCGGTCACTCAAGAGCGCACCTTGC
GACATGCGGTGGTGTGTCCAGCCGCCGCCATGTGTCGCACGCCGGACGCACCCACAGAAGC-TTTTTTTTGTACGTGTTT
TAGGTTCTTTCTTTTTGT--------TTTTTTGATTTTGCATGGTCTTTTTTAGGTTTTTGCCTTTTTTTAACCTTA---
----GTGAAGCACACCATGTGG-AAACATAGACATGCTTCACGGTGAAGAACAGTGCAGTTGTGTTTTACGGAAAAGCA-
--------------------------TGTGCTTTTCACAAGTGTACTTATTGAAAAGTGAAGTGCGGTTGTACTTCTTAA
AAGTGGACAACACAGTTCACGAAAAAGAAAAACAGTGCTTGGCATGAAGCACATATGTGCTTT-CGAAAAATGAAAAGC-
>chr1A_334
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGTAGATAATGAAGGATAATCAAATGATGACCACACGATGTTACTAATTGCTGC
TCTAATAGGTTAGCGTACGTGACCTTTGCCCGTCCAACTGGGTTTGCACCATTCCTTCCACCCACAGGAAGGCGAAAAGT
AGAAGAGGGAAAACAGCAATCTAAAAAAAAAG------GTAGTAGAAGAGGGAAAAAGGAGAAGTGGGGACGGAAGGAGC
TCCAAGG---TGGAATCCATTCCATCCCGAGACCCGAAATCCATCCATCACGCCCTTGGCCTTGGCAGCCGCAGCAGACG
ACTCGCCTACTCTGCGCCTGCCTGAGCCGGGGACGGGGAAGAAGGAGAGGAGGGAACCGCCGACGGAGTGGGAACAAGGT
GAGCCCCGACCCCGATCTCTGTCACCGCCGTCGTCGCTCTTCGCTTCGGGCTGCTGGTTTCTCCACCCTTCTCAGCCC--
--GCCTACTCTTCTTCTTGCTTGCTTCCCTGCTACTAACACTGCTGCCGCCGCCGCCCCCGCCCCCGCCCCCAATCCCCA
TATCCAACTCAAAATTGTCCATCGTATG----CTGCTCGTCTAAACACGATCAAACCATCACCGTCCCCCGATTTCCGTT
TCTTTTCTTGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTAAAGACTACTACCTGTCCT----GTCAACTTGTGTAGCAATCCATCTACGCGATACTTTATCAGTTCAGTTCAATCT
CCACGGCCAAGAAATGGCCCTGCAAGTTGCGTCGCCCGCCCTTTTTTTCTGGGC----AACAAGCAAGAAACCCTAGCTG
TAGCATCACAAGGACCGCTTCTAGTTTCTGTCAGATATGCTCAACAACATAGGTAGGTTGTTCAGCTTCCGATAACCTCC
CACCCGCAATCTACTACTGGCAGCTGTTCATGTTCTGGGCTGCTTGGATCCCCCTTCTTGGCTGATAGTGAATTGCAATT
TTGGTGCCCGATTTCTTTCTTTGCTATGTTATATTGTCCTTGTCTCCTAACGTTGCACTTTACTTGCCTGCAGAACCACG
GCAGGTATC----GACTGCCGGATCACTGTAGCAAGATGAGCGACAATCTCATGGACAAAGTTAACGCCCTGGGCGAGCG
CCTCAAGATCAGCGGCGCGGAAGTCAGCCGCAAGATGTCCACCGGCGTCACTAGCATGAGTTTCAAGATGAAGGAGTTTT
TCCAAGGCCAGAACATGGCCGACAAGATTGTTGACGAGGCCACCTTGGAGACCATGGACGGCCCCGATTGGGCTACCAAT
CTTGAGATATGCGATATGGCCAACACCGAGAGGGTCAACAGCGTCGAGCTCATCCGCGCCATCAAGAGGCGAATCATGCT
CAAGAGCCCGAGGGTGCAGTATCTGGCTCTTGTCCTCCTCGAGACCATTGTCAAGAACTGCGAGAAGGCTTTCTCCGAGA
TTGCTGCGGAGCGGGTCCTTGATGAAATGGTGAAGCTTATTGATGACCCACAGACTATAGTCAACAACAGAAACAAGGCG
CTCATGCTTATTGAAGCATGGGGAGAGTCAGGAGAAGAGCTCCGCTACCTTCCTGTGTATGAAGAAACTTACAAGGTACT
TATTGATGATCATCATACATGGAATGCTCTCTTGTTAAACTGGCTAATTAACCA-GAACACAGTGCTTTACTGCTGATCT
GCCAAGAATCTGAGAGAGCTTATTTCGTTCCTTTTGAACTTTGGTTAATTGTGGATAATGAGATATTAAGTTACTTATGT
TAACAGGAGGGATAATTAGGATGCATTTTCATAAACATTTCTTTTGTGCAGTTT--ACACTGCATCCATAGCACAGTGTT
GTGCCTGAAACTTATATCATTGCTTCTGGTCAACTAGCGCTGTTAAACATGTGGATTTCAGTTGACATTTGGTTTTCGTT
GCAGAGCTTAAGGTCTAGGGGAATTCGCTTCCCTGGCCGCGATGATGAGAGCCTTGCGCCAATATTTACTCCTCCCCGTT
CAGTACCTGCAGCTGAACCATATTCTGATGCAGCACAGGACGGGTATCAAGAAATTCCAGATGAAAGTTTTGCTCCAGTT
CGTGCTGCCCCTTCTGTACAAGTCGACGAGGCTTTTGAGGTGGCTCGTAATAGCGTTGAACTTCTTTCCACAGTGCTATC
ATCATCTCCACAAAAAGAGGCTCTAGAGGTTAGTCTTTTCTTTTGCCGGTCAATTAGAAACTCCCGCTTATGTGAGTAGT
TCATGTTGTTCAGCTTGGAATCTGTGATATAGGCAATGTGCAGTCTGTGATGTCGGCATCTCAAAAGGCAGGGTTGAAGT
TTTGTTATCTTTATACATGACTACTCCCTCTGTCCGGGTTTATGAGGTCCCCTTTCATTTTGAGCCAAAGTTTGACCATG
TATTTAACTGATATAATATAAACTATATGTCATGAAAACTATATCATAGAAAACCTCTTTCAAATATAAATTCAACAATA
TATTTCGGGTAGCATATACTTTATATATTTTTAGTTAAATACATGGTCAAACTTAGACCCAAAATGCAAGGGGGCCTAAT
AAACCCGGACGGAGGTAGTATATGTTAAGGAAATTACATATTGGTTGCTAGCATTTGTTACATTTAATGGTCTTTTTTAG
TATACTGCAACAATGGCCCTGGCCAATCAACCTGTTATCCCTTATTACCTTATCACAGTCTCGGCGCAGAGCAGTATCTG
AAAGTAAGTACTCCCTCCGTCTCAAAATAAGTGTCTCGAGATTAGTACAACTTTGTACTGAAGTTAGTTCAATGCTGAGA
CACTTATTTTGGGACGGAGAGAGTAGTTAACTGACAGTTTGCAAAAGAACTTCA-TC-----------------------
------------------------------------------------------------TATTATTTTTATCTGTTTAT
TCAG-ATATCTGATTCAATATTATACCAGTACGATGCTATCATCAACTCCGTGTCCTGATTCTCTACTGCACCTCACATA
CATGCAGGATGACTTGACTACCACCCTGGTCCAGCAATGCCAACAGTGTCAATACACGATCCAGAGAATCGTTGAAACTG
CAGGTGATAATGAGGCTCAACTCTTCGAGGCACTGAGTATCCACGATGAACTCCAGAAAGTTCTGTCCAAGTACGAAGAC
CTCAAGGAGCCCATCGTCGCAGAGCCTGAGCCAGAACCAGCGATGATTCCAGTCACGGTGGAGCCTGAGGAATCCCCACG
CGCTGTTGGCAAAGACACCCCCTCGAGGAAATCAGCTGGGTCCGGTGGTCGCTCTAGCGGCGGGGATGACTTGCTTCAGG
ATCTCGACGACATGATCTTTGGTAAGAAAGCCGGCACCGCCTCCCAGCAGGAAAGGACTCCCCGGAAGGAGCAGAAGGAC
GATTTCATCGGCTTATGATCAACGGGTATAGA--TATCTGTCCGGCTGAAACTTGTCATAAAGGTGTTGCGTGCTCAGTG
CATTTCCAAACCATGATACAGGTTTGTGCTTGCGCGTCTATCTTCTCCTGTATCCCGGGGATTGCTGCACAGTGGTAGAT
GTTTAACGTCGCATTGAGTTTCATGTGGGACTCCTTTTCTTTCTGTGATTGTTATGCGAGCCAAATTATTGAAATGCTGG
GGCTGCTCTCATGCATGGCATGGGTAAGTATATAAGTTTGTACATCGCATGGGTAAGTATATAAGTATATAAGACGGGGT
CTGCTCGTTCATCACGATTTTTGAAATCT-----ATATGTTTTGTCACCCAAGTTATTTTGAAGACTGAAAGAATTCAGC
GACGAACGAAAGGCATAAATGTGCTTATCTTCTTCATTAATGTTCAAAATCGACAGGTTATAACATGACGCAGTTGCTCG
CTTACAGGCCAGGAATAGCTGAGCCCTCCTTGGCACGCACACTTACAACGCCAACGGGTCGTCACGCTGATCATTGGCTC
TGGCCCATAGAGATTAGGTTGTCAGGGGACGACTAACTGGAGTGTACTTTTCA-----CTCAAAAACAAAAAACCTTTCC
CTAG-----------AAAAAAAAAATTGGAGGTACCCCTTCGTGGGTGATCTCGAGCGGTCACTCGGGAGTGCACCCTGC
GACATGTGGTGGTGCGTTCAGCCGCCGCCATGTGTCACAAGCTGAATGCACCCATGGAGAAGTTTTTTTTGCACATGTGT
TAGGTATTTTTTCGTTTTTTCTTGAGTTTTTTGATTTTGCATGGTCTTTTTTAGGTTTTTGTCTTCTTTACTCTTTTTTC
TCATGTGAAGCACACCATGTGAAAAATAAAAACATGCTTCACGATGAAGCACAACACGGTTGTGGTTTACGAAAAAGCAC
AACTGTGCTTTAGTATG-------------------ACAACTGTACTTTTTGGAAAGTAAAGTACGGTTGTACTTCTCAA
AAGCGAACAACATAGTTCACGAAAAGGAACAACGGTGCTTGTCATGAAGTACATATGTGCTTTGCGAAAAATGAAAAACA
>SNPs
--------------------------------------------------S------S-----S-------SSSSSSSSS
SS--------------S----------------------------------------------------S---S------
------S-------------------------------------------------------------------------
-------------------------S-----------------------------S---------S-------------S
----------S-------------------------------------------------S-------------------
------S------------------------------S------------------------------------------
----------------S--------------------S------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
---------------S--------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------S-------------S---------------------
--------------------------------------------------SSSSSS-----------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
---------------S--------------------------------S-------------------------------
--------------------------------------------------------------------------------
-------S-----------------S--S-----------SS-------------------------------S------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------S--S--------------------------------------------S-----------
------------S-------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-------SSSSSSSS-S--SSSSSSS----------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S--------------------------------------S
-----------------------------------------------S-----------------S--------------
-----------------------------------------------S------------------------------S-
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S--------S-SSS-SSS-SS--S
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
---------------------------------------------------------------------------S-SS-
SSS-S-----------------S--S------------------------S----------S--S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S--------------------------------S----------------------
-----------------------------------------------------------------------S--------
--------------S-----------------SS----------------------------------------------
---------------------S----------------------------------------------------------
---------------------------S--S-------------------------------------------------
--------S-----------------------------------S--S--------------------------------
--------------------------------------------------------------------------------
--------------SS-SSSS-SS--------------S-------S----------S----------------S-----
-------------------SS-------------------------------------S-S------------S----S-
S------------------S-----------------------S-----S-SSSSSSS----------------------
-----------------S----------------------------------------------------------S---
S---------------------S-----------------S-----------------------------S---------
---SS---S--S--SS----S-S--------S---------------------SS-------------------------
--SSS----------SSS---------------S-------S----------------S-------S---S---------
---S-------S--S--SSSSSSSSS-------------------SS-------------------------S-------
-------S--S--------SS----------------------S-------------------S-S--------------
>forward_438
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTGACCTTTGCCCGTCCAAT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1754
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GATCACG
CCAGGTATCGACT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1466
--------------------------------------------------------------------------------
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------CCAAGAAATGGCCCTGCAAA------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3745
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------CACTGCACCTCACATA
CATGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>forward_1754
--------------------------------------------------------------------------------
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------------------------------------------------------GCACTTTACTTGCCTGCAGG------
--------------------------------------------------------------------------------
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>reverse_4025
--------------------------------------------------------------------------------
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------------------------AAGGAAATCAGCTGGGTCCG------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>forward_2986
--------------------------------------------------------------------------------
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------CGTTCAGCGTGGAATCTGTT------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4701
--------------------------------------------------------------------------------
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------------------------------------------------------------TTCACGCTGATCACTGGCAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
