>input_sequence_33261
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--------ATGGCCGCGATGATGGGGATTTCCGCTTTGCGCTCCCACCACCCGCTCCCCCTGTCGACCGCGCGCCCGGCC
ACGGCTCTCCCCCGCGCCACGTCGCCGACGTCGCACCAACCCAGCTCGCTCGCGCTTCTACGATGCCGATGCCGATGCCG
ACGCAGCCTCCCCCATTCTTGCTGCAGCTCCTCTCCTCGCGCCTCACTCTCGCCAGGCGCCCCCGACTCGGC---TGCTT
TCATGGCATTGGCTCCCAACAATGCCGCCCTTCGCCACCGCCTCATCGCCCCCAACTCCACCGCCGGCTCCGGAGATGCC
GCCGCCACCGGAGGCCTGCCCAGCGTGAGTGCTCGTCCTCCTCCTCCTCCTCTTGATAGAGAATCGAACAATCGTCGACG
ACAGATAGTAGATAGTATATGTATATTCTTATCCTCTGCGCTTGTATGTATGTATGTATAGGTTGTTGGCATCGCGCACC
TGGCGGTGTCGCTGGGCATCGTGCTGGCCACGGACAAGTACCTGAAGCAGGCGTTCGTGGCGGCGTCCATCAAGTTCCCC
AGCGCCCTCTTCGGCATGTTCTGCATCTTCTCCGTGCTCCTCGTCCTCGACACCGTCGCGCCGGCGCTGGCCAAGGCCTT
CATGGACTTCTTCGAGCCCGCCACGCTCTTCATCCAGCGCTGGCTGCCGCTCTTCTACGTCCCCTCCCTCGTCGTCCTGC
CCCTCGCCGTCAGGGACGTCCCGGCCGCCTCCGGCCTCAAGATCTGCCTCATCACATGTACTCTACCACCACCACGCATG
CCATTGCCACTCAGTCCTGTCCTGCGACAAGATTTATTTTTCTTCACTGACGCTGTCGTCGTCGATGCTGCATTTTTCCT
TTTCGTGTGTCGCCGGCAGTCGGTGGCTGGTTCGCTTCGCTGGCGGTGGCGGGGTACACGGCGCTCACCGTGAGGAAGAT
CGTCAAGACGGAGCTCATCGCGGCCGAGCCGATGGGCAAGCCGTCCGCCTTCGCGACGTTGGAGTTCTGGGCGTGGGGCG
CCGTCTTCGTCGCCTCGTTCGCGACGGCGTTCGTGAACCCCACGGCGCTTGGCACCACGGCCAGGACGTGCCTCCCGTTC
ATGCTCGCTTCCACTGTACTGGGATACATGGTTGGTTCTGGGTAATTCATCACTATGTCTTTCTACTAGTACTAACATAT
ATAC------TCCTATACACTTACAGTTAATAAGATACCAATACAG----TACTATACTACGTGCAGGGTT---TAGTAC
TACGGCTACTTCATTTGCATTTGCCTGACTACAACATACATGGT-ATGCTATTTTTTCAGGTTACCGTCTGGTATCAAGA
AATTGTTACACCCGATCATCTGCTGCGCGCTTTCTGCAAATTTGTCGGCGGTCGCATACGGGTACCTCTCCGGGTCCGGA
ATCGATGCTGCGCTAGGTTTTAAGCTAAACTTCACTGCAATCAAATTCTGAATTCTTCTGTAGTTTCACAACTGTTGCCT
TGTAATTGCGGCCGTATATACTCAGCTCT----TAACACAAGTGGTTGGTT----TTGCAGGTGATTACCTGACAAAGGT
GCCATCAAATCCTGGAGCTGGTGACGTGCTGATGGGTTTTCTGGGGTCTGTCATCTTATCATTTGCCTTCTCAATGTTCA
AGCAGAGAAAGGTACATGTAATTCCCAGCCAGCTAGCTAAGCTAGCATTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATCTTGCAACACTGTTACGGTTGCTCTGTATCGAATCCGTAATAACTTGTGT
CGCTGTGGGAATTTTCAGCTTGTGAAAAGGCACGCGGCAGAAATTTTCACGTCGATCGCGATTGCGTCGACATTCTCCCT
GTACTCCACGGCCATCCTAGGACGCCTGATTGGGCTGGAGCCAACATTGACCATCTCGATTTTGCCAAGGTGCATAACCG
TGGCGTTGGCTCTGAGCATAGTGTCTTTCTTCGAAGGTGATTAAATGAGATCCCCTTGCATTCTCTTCTGTGTAGCCACT
GAATTTGGAATGTGGTGATATAACTAGCTAACTGATGTGCTTTGTGCG-TCGATGACGCAGGCGCAAACACTTCGCTGAC
GGCTGCCGTGGTTGTTCTGACGGGCCTGATCGGCGCCAACTTTGTGCAAGCGGCCATGGATAAGCTTGGCCTCAACGACC
CCATAGCTAGAGGGATCGGAACAGCTTCCAGGTAAACTTGATGAAACTTTGGGAACCTGTCCTTGCGTTCGCTCTGAAAG
CGTGCTAAATTTGATGGTG------GGTGCAGTGCTCATGGGCTGGGAACCGCGGCGCTGTCGGCCAAGGAGCCTGAGGC
GCTCCCTTTCTGCGCGATCGCCTACGCGCTCACCGGCATTTTCGGCTCACTGATCTGCTCCTCCCCGGCAGTCAGGCAAA
GCCTGGTGTTCATAGCCGGCTGA---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>chr1D_1_TraesCS1D01G200000
GTATGTAGTTGCAAACGGTGGCGAAGACGGCTGGGATAAACCACGAAGAGTGGCTGGCGAACGCGGATCGTTGGGTTGCC
GGCTTCCTGGAGAAGTTCGAGGAGCACTGCCACGTCATGGTATAGTATACTTTGCTTAAAATCTACGAACAGAGTAGTCA
GGTCGAGCATGAAATTCAGGAGAAAGAGACATACTGATGCTGCTGCTGCTGTAATAATTGCGCAGGAGACTGCCATCAAG
GACCGGATACAGGAGAGGCTGGGGAGGCAGGCGGGCAAAGGCATTGCCGGCGGTCTCATGCAGCAGCCGGTGGCGGCGGC
CTGATCTTTCAGACCAGGTCTTGGTGAAGGTGTGAACAAACACCGAGGAAGCGAGAAGTTGTTTAGTTGTGCTTGTGTCA
TGGAATGTGATGCTTGTGC-GAGTAAAGTGGTTGAGTTAGCTGAGCAAATCCTTTGTATT---ATTATTGTTTTTTTGTT
GTTGGAGGAGGACGTGTGTGTT------TGTGTGTGTGTGTTGTTTCACAGTTTTGTACGCAGATATGATGTCTATAGCA
GAGGCGTTTGGTATCGGTCGAGCGTCTTACCTACTTACTATGTGGAGAGAGTTTTGTTACCCTTGTTATTTGTAGGATGT
ATCTTCTATAATGAGAGAAAAGAAGTTGCTCCATTTTTCGTGGTTACTACATAAGAAAAAGGGAGCACAAGATTAAGACC
A------AAATTTTTGTAACCCATCAAGTATGCTTTTTTTGAA------------------------GGAAGAAAAGAAC
GTTGGTGTTGAACAGCTGCTACACATGGAGTGGTGATGTG--------TGCTGGGTGCCCTGCTGAATGGTAACCGAAGG
ATACCAATCCGGATACATCCTGGCCTCGGGCTCCTGGCCACATACACTTGCGTCAGACAGAACACTGAAAAGTCTGCCCG
GTTCGCATCAGCGGCGAGAGGCAGCCAACCCTGCTGCTTCCGTCTCCGTTTCTGCTTCTGCTCCACTCCACTGGCCGGCC
GGTCGTTCATGGCCGCGATGATGGGGATTTCCGCTTTGCGCTCCCACCACCCGCTCCCCCTGTCGACCGCGCGCCCGGCC
ACGGCTCTCCCCCGCGCCACGTCGCCGACGTCGCACCAACCCAGCTCGCTCGCGCTTCTACGATGCCGATGCCGATGCCG
ACGCAGCCTCCCCCATTCTTGCTGCAGCTCCTCTCCTCGCGCCTCACTCTCGCCAGGCGCCCCCGACTCGGC---TGCTT
TCATGGCATTGGCTCCCAACAATGCCGCCCTTCGCCACCGCCTCATCGCCCCCAACTCCACCGCCGGCTCCGGAGATGCC
GCCGCCACCGGAGGCCTGCCCAGCGTGAGTGCTCGTCCTCCTCCTCCTCCTCTTGATAGAGAATCGAACAATCGTCGACG
ACAGATAGTAGATAGTATATGTATATTCTTATCCTCTGCGCTTGTATGTATGTATGTATAGGTTGTTGGCATCGCGCACC
TGGCGGTGTCGCTGGGCATCGTGCTGGCCACGGACAAGTACCTGAAGCAGGCGTTCGTGGCGGCGTCCATCAAGTTCCCC
AGCGCCCTCTTCGGCATGTTCTGCATCTTCTCCGTGCTCCTCGTCCTCGACACCGTCGCGCCGGCGCTGGCCAAGGCCTT
CATGGACTTCTTCGAGCCCGCCACGCTCTTCATCCAGCGCTGGCTGCCGCTCTTCTACGTCCCCTCCCTCGTCGTCCTGC
CCCTCGCCGTCAGGGACGTCCCGGCCGCCTCCGGCCTCAAGATCTGCCTCATCACATGTACTCTACCACCACCACGCATG
CCATTGCCACTCAGTCCTGTCCTGCGACAAGATTTATTTTTCTTCACTGACGCTGTCGTCGTCGATGCTGCATTTTTCCT
TTTCGTGTGTCGCCGGCAGTCGGTGGCTGGTTCGCTTCGCTGGCGGTGGCGGGGTACACGGCGCTCACCGTGAGGAAGAT
CGTCAAGACGGAGCTCATCGCGGCCGAGCCGATGGGCAAGCCGTCCGCCTTCGCGACGTTGGAGTTCTGGGCGTGGGGCG
CCGTCTTCGTCGCCTCGTTCGCGACGGCGTTCGTGAACCCCACGGCGCTTGGCACCACGGCCAGGACGTGCCTCCCGTTC
ATGCTCGCTTCCACTGTACTGGGATACATGGTTGGTTCTGGGTAATTCATCACTATGTCTTTCTACTAGTACTAACATAT
ATAC------TCCTATACACTTACAGTTAATAAGATACCAATACAG----TACTATACTACGTGCAGGGTT---TAGTAC
TACGGCTACTTCATTTGCATTTGCCTGACTACAACATACATGGT-ATGCTATTTTTTCAGGTTACCGTCTGGTATCAAGA
AATTGTTACACCCGATCATCTGCTGCGCGCTTTCTGCAAATTTGTCGGCGGTCGCATACGGGTACCTCTCCGGGTCCGGA
ATCGATGCTGCGCTAGGTTTTAAGCTAAACTTCACTGCAATCAAATTCTGAATTCTTCTGTAGTTTCACAACTGTTGCCT
TGTAATTGCGGCCGTATATACTCAGCTCT----TAACACAAGTGGTTGGTT----TTGCAGGTGATTACCTGACAAAGGT
GCCATCAAATCCTGGAGCTGGTGACGTGCTGATGGGTTTTCTGGGGTCTGTCATCTTATCATTTGCCTTCTCAATGTTCA
AGCAGAGAAAGGTACATGTAATTCCCAGCCAGCTAGCTAAGCTAGCATTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATCTTGCAACACTGTTACGGTTGCTCTGTATCGAATCCGTAATAACTTGTGT
CGCTGTGGGAATTTTCAGCTTGTGAAAAGGCACGCGGCAGAAATTTTCACGTCGATCGCGATTGCGTCGACATTCTCCCT
GTACTCCACGGCCATCCTAGGACGCCTGATTGGGCTGGAGCCAACATTGACCATCTCGATTTTGCCAAGGTGCATAACCG
TGGCGTTGGCTCTGAGCATAGTGTCTTTCTTCGAAGGTGATTAAATGAGATCCCCTTGCATTCTCTTCTGTGTAGCCACT
GAATTTGGAATGTGGTGATATAACTAGCTAACTGATGTGCTTTGTGCG-TCGATGACGCAGGCGCAAACACTTCGCTGAC
GGCTGCCGTGGTTGTTCTGACGGGCCTGATCGGCGCCAACTTTGTGCAAGCGGCCATGGATAAGCTTGGCCTCAACGACC
CCATAGCTAGAGGGATCGGAACAGCTTCCAGGTAAACTTGATGAAACTTTGGGAACCTGTCCTTGCGTTCGCTCTGAAAG
CGTGCTAAATTTGATGGTG------GGTGCAGTGCTCATGGGCTGGGAACCGCGGCGCTGTCGGCCAAGGAGCCTGAGGC
GCTCCCTTTCTGCGCGATCGCCTACGCGCTCACCGGCATTTTCGGCTCACTGATCTGCTCCTCCCCGGCAGTCAGGCAAA
GCCTGGTGTTCATAGCCGGCTGACACACAT--ATATACTGGTATACAGCAACAACAGCAGCTTGTGATGAG-TTTTTCTT
TCCTTTTTATAAAAAAATGGTAAGTGATTGGAGAACAAAAGTGCAAAATTTCCCGCCAAAAAAAGG-TCAACATGTAAAA
ATGGATGGTTGCAACAAGTCAAGGTGTGAGTAGTACTCCCTTGCTTGTATAGCTGCAAAATGTTCAGTGATTGCTTTTCT
TCATGTGATGTTTTTTCTAAAGGAACAAGAGTAATAGCCTAATTGCTTTGATGCCAACAATTGGCATTCCTATCAATTGG
TTGGTTGGCAACAAATC-GTTCTTGCCTCTTTACATGGCCCTTTTTGCCTATGTGAAGCCGAGAGACAAGTAAAAAGGAA
GGAAGTGAGCTCTCATGCAAG--TCAGTCTCTATATGTCCTCTCATGCAAGAGTCAATCTCTACACGTGCTCCTAGATAA
AAGGAAGGAGAAAAAGAGAAAGTGCAAAAAATCACTAACTTAAGAGCGACCTTACAACCAACCATATTGTATGAGTGAGT
AATATTGCTAACTTTTGATGACATGACAGTCTTATATAGGCAGTTGTTGGCTATATTATTAACATTGCTCTTAAGAAATT
CTGAATTTTTGGTAAAAAAATCGTAACGGAGCTAAAGTTTTGCCTCATCCATTAATTAAGAAGATAGTTGCCCAGTTAGC
TGACAGGAAACCAGGCGAACCCTGTTACAATCTTGACCACACATGTGAACTACTCCCAGACTATGAACCCACATGAATCC
CCAACAAACACACTCAACACAGAACCAGTCCAGCACCCAAACATTTTGGTCAC--CAATGGAAACCCATCGACCCACAAC
CACTTGAAAAGGATATAAAGATAGAGACAACGGACAAATCTGAGCTCACGCGTGCAACCTAGACAACTACTTCCTCCGTT
CCTAAATATAAGTCTTTGTAGAGATTCCACTAGGTGGACTATATACGAAGCAAAATGAATGAATCTACACTT
>chr1B_6
-----TAGTTGCAAACGGTGGCGAAGACGGCTGGGATAAACCACGAAGAGTGGCTGGCGAATGCGGATCGCTGGGTGGCA
GGTTTCCTGGAGAAGTTTGAGGAGCACTGCCACGTCATGGTATAGTATACTTTGCTTAGAATCTACAAACAGAGTAGTCG
AGTAGAACATAAAATTCTTGAGAAAGAGACGTATACTGA-TGCTGCTGCTGTAATAATTGCGCAGGAGACTGCCATCAAG
GACCGGATACAGGAGAGGCTGGGGAGGCAGGCCGGCAAAGGCATAGCCGGCGGTCTCATGCGGCAGCCGGTGGCGGCGGC
CTGATCTTTCAGACCAGGTCTTGGTGAAGGTGTGAACGAACACCGAGAAAGCGAGAAGTTGTTTAGTTGTGATTGTGTCA
TGGAATGTGATGCTTGTGC-GAGTAAAGTGGTTGAGTTAGCTGAGCAAATCCTTTGTATT---ATTATTGTTCTTTTTTT
GTTGGTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTTCACAGTTTTGTACGCAGATGTCTA---TATAGCA
GAGGCGTTTGGTGTCGATCGAGCGTCTTACCTA----CTATGCGGAGAGAGTTTTGTTAACCGTGTTCTCTGTAGGCTGT
ATCTTCTGTAATGAGAGAAAAGAAGTTGCGCCGTTTTTTGTGCTTACCCCATAAGAAAACGGAGCACGGATTAAGTTGAA
CTATG--AATTGTTTGTAACCCATCAAGAATGTTGGTGTTTTTCTCACAAAAAATGAA--------------AAAAGAAC
GTTT-------------------CATGGAGTGGTGATCTG--------TGCTGGGTGCCCTGCTGAATGGCAACCGAAGG
ATCCCAATCCGGATACGTCCTGGCCTCGGACTCCTGGCCACATACACCTGCATCAAACACAACACCGAAAAGTCTTTCAG
GTTCGCATCAGT-------GGCAGCCAACCCTGCTGCTTCCGTCTCCGTTTCAGCTTCTGCTCCACTCCACTGGCCGGCC
GGTCGTTCATGGCCGCGATGATGGGGATTTCCGCTTTGCGCTCCCACCACCCGCTCCCCCTGTCGACCGCGCGCCCGGCC
ACGGCTCTCCCCCGCGCCACGTCGCCGACGTCGCACCAACCCAGGTCGCTCACGCTTCTACGATGCCGATGCCGATGCCG
ACGCAGCCTCCCCCATTCTTGCTGCAGCTCCTCTCCTCGTGCCTCGCTCTCACCGGGCGCCCCCGACTCGGC---CGCTT
TCATGGCATTGGCTCCCAACAATGCCGCCCTTCGCCACCGCCTCATCGCCCCCAACTCCACCGCCGGCTCCGGAGACGGC
GCTGCCACCGGAGGCCTGCCCAGCGTGAGTGCTCCTCCTCCTCCTCTTCCTC-------AGAATCGAACAATCGTCGACG
ACAGATAGTAGATAGTA---GTATATTCTTATCCTCTGCACTTGTACGTATGTATAGGTTC----TTGGCATCGCGCACC
TGGCGGTGTCGCTTGGCATCGTGCTGGCGTCGGACAAGTACCTGAAGCAGGCGTTCGTGGCCGCGTCCATCAAGTTTCCC
AGCGCCCTCTTCGGCATGTTCTGCATCTTCTCCGTGCTCCTCGTCCTCGACACCGTCGCGCCGGCGCTGGCCAAGGGCTT
CATGGACTTCTTCGAGCCCGCCACGCTCTTCATCCAGAGGTGGCTGCCGCTCTTCTACGTCCCCTCCCTCGTCGTCCTGC
CCCTCGCCGTCAGGGACATCCCGGCCGCCTCCGGCCTCAAGATCTGCCTGATCACACGTACTCTACCACCAC---GCATG
CCATTGCCACTCAGTCCTGTCCTGCTACAAGATTTTTG-TTCTTCACTGACGCTGTCGTCCTCGATGCTGCATTTTTCTT
TTTGGTGTGTCGCCGGCAGTCGGTGGCTGGTTCGCTTCGCTGGCGGTGGCGGGGTACACGGCGCTGACCGTGAGGAAGAT
CGTCAAGACGGAGCTCATCGCGGCCGAGCCGATGGGCAAGCCGTCCGCCTTCGTGACGTTGGAGTTCTGGGCGTGGGGCG
CCGTCTTCGTCGCCTCGTTCGCGACGGCGTTCGTGAACCCCACGGCGCTTGGCACCACGGCCAGGACGTGCCTCCCGTTC
ATGCTCGCTTCCACTGTACTGGGATACATGGTTGGTTCTGGGTAATTGATTACTATGTCTTTCTACTACTAACAACATAT
ATACTCCTAGTCCTATACACTTACAGTTAAGATACCA------------ATACAGTACTATGTACAAGGTTTAGTACTAC
TACTACTACTTCATTTGCATTTGCCTGACTACAGCTTATATGTGGATGCTCTCTTTTCAGGTTACCGGCTGGTATCAAGA
AATTGTTACACCCGATCATCTGCTGCGCGCTTTCTGCGAATTTGTCGGCGGTCGCATATGGGTACCTCTCCGGGTCCGGA
ATCGATGCCGCGCTAGGTTTCAATCTAAACTTCACTGCAATCAAATTCTGAATTCTTCTGTAGTTTCACAACAGTTGCCT
TGTAAGTGCGGCCATATATAGTCTGCTCTGCTCTAACACAAGTGGTTGGTT----TTGCAGGTGATTACCTGACAAAGGT
GCCATCGAATCCTGGAGCTGGTGACGTCCTGATGGGATTTCTTGGGTCTGTCATCTTATCATTTGCCTTCTCAATGTTCA
AGCAGAGAAAGGTATATGTAATTCCTAGCTAACTAGCTGGCATTGTTATCTTTGCAACACTTTCTT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTTGCGAAAAATCTTGCAACACTGTTACGGTTGATCTGTATCGAATCC-TGATAAATCGTGT
CGTTGTCGAA---TTCAGCTTGTAAAGAGGCACGCGGCAGAAATTTTCACGTCGATCGCCATTGCATCGACATTCTCCCT
GTACTCCACAGCCATCCTAGGACGGTTGATTGGGCTGGAGCCAACGTTAACCATCTCCATATTGCCAAGGTGTATAACCG
TGGCGTTGGCTCTGAGCATAGTGTCTTTCTTTGAAGGTAATTAAAAGAAATCCCCTTGCATTCTCTTCTGTGTAGCCACT
GAATTTGGAATGTGGTGATA----TAGCTGACTGATGTGCTTTGTGCAATCCATGATGCAGGTGCAAACACTTCTCTGAC
GGCTGCCGTGGTTGTTCTGACGGGCCTGATCGGCGCCAACTTTGTGCAAGCGGCCATGGATAAGCTTGGCCTCAACGACC
CCATCGCCAGAGGGATCGGAACAGCCTCCAGGTAAACTTGATGAAACTTTGGGATCCTGTCCTCT-GTTCACTCTGAAAG
CGTGCTAAATTTGATGGTGTTTTGGGGTACAGTGCTCATGGGTTGGGAACCGCGGCGCTGTCGGCCAAGGAGCCTGAGGC
GCTCCCTTTCTGCGCCATCGCCTACGCGCTCACCGGCATTTTTGGCTCCCTGATCTGCTCCTCTCCGGCCGTCAGGCAAA
GCCTGGTGTTCATAGCCGGCTGACACACATATATACACTGGTATACAGCAACGACAGCAGCTTGTGATGAGTTTTTTCTT
TCCTTTTTATAAAAGAATGGTAAGTGCTTGGAGAACATAAGTGCAAAATTTCCCGCCAAAAAAAGGGTCAACATGTAAAG
ATGGATGGTTGCAACAAGTCAAGGTGTGAGTAGTACTCCCTGGCTTGTATAGCTTCTAAATGTTCAGTGATTGCTTTTCT
CCATGTGATTTTTCTTCTTAAGGAACAAG----ATAGCCTGATTGGTTTGGTGCCTACGATTGGC---------------
-TGGTTGGCTACAAATTGGTTCTTTCCTCTTTACATGGCC-TTTTTGCGTATATGGAGCAGAGAGACAAGGAAAAAGGAA
GAGAGATG----------------------------------TCATGCAAGAACCAGCCTCTAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr1A_6
-----TAGTTGCAAACGGTGGCGAAGACGGCTGGGATAAACCACGAAGAGTGGCTGGCGAACGCGGATCGCTGGGTGGCT
GGCTTCCTGGAGAAGTTCGAGGAGCACTGCCACGTCATGGTATAGTATACTTTGCTTAAAATCTACAAACAGAGTAGTCA
AATCGAACATGAAATTCAGGAGAAAGAGACATACTGACGCTATTGTTATAATTACT------CAGGAGACTGCCATCAAG
GACCGGATACAGGAGAGGTTGGGGAGGCAGGCCGGCAAAGGCATAGCCGGCGGTCTCATGCGGCAGCCGGTGGCGGCGGC
CTGATCTTTCAGACCAGGTCTTTGTGATGGTGTGAACGAACACCGAGAAAGCGAGAAGTTGTTTAGCTGTGCTTGTGTCA
TGGAATGTGATGCTTGTGCTGAGTAAAGTGGTTGAGTTAGCTGAGCAAATCCTTTGTATTATTATTACTGTTCTTTTTTT
GTTGCTGGAGGA--------------TGTGTGTGTGTGTGTGGTTTCACAGTTTTGTACGCAGATATGATGTCTATAGCA
GGGACGTTTGGTG----TCGAGCGGCTTACCTA----CTATGTGGAGAGAGTTTTGTTACCTTGATCTT-TGTAGGCTGT
ATCTTTTGTAATGAGAGAAAAGAAGTTGCTCCATTTTAAG-GCTTACTCCATCAGAAAAAGGGAGCACAAGATTAAGACC
ATAGCTTAAATTTTTGTAACCCATCAAGTATGCTGCTGTTTTTCTTTTCTTTTTTTTTTAAAAAAAGGGAAGAAAAGAAT
GTTGGTGTTGAACAGCTGCTTCACATGGAGCTGTGATGTGTGCTGGCCTGCTGGGTGCCCTGCTGAATGGCAACCCAAGG
ATCCCAATCCGGATACATCCTGGCCTCCGACTCCTGGCCACATACGCCTGCATCGAACACAACACCGAAAAGTCTTTCAG
GTTCGCATCAGT-------GGCAGCCAGCCCTGCTGCTTCCGTCTCCGTTTCTGCTTCTGCTCCACTCCACTGGCCGGCC
GGTCGTTCATGGCCGCGATGATGGGGATCTCCGCTTTGCGCTCCCACCACCCGCTCCCCCTGTCGACCGCGCGCCCGGCC
ACGGCTCTCCCCCGCGCCACGTCGCCGACGTCGCACCAACCCAGCTCGCTCACGCCTCTACGATGCCGATGCCGATGCCG
ACGCAGCCTCCCCCATTCTTGCTGCAGCTCCTCCCCTCGCGCCTCGCTCTCGCCAGGCGCCCCCGACTCGGCCGCTGCTT
TCATGGCATTGGCTCCCAACAATGCCGCCCTTCGCCACCGCCTCATCGCCCCCAACTCCACCGCCGGCTCCGGAGACGCC
GCCGCCACCGGAGGCCTGCCCAGCGTCAGTGCTCGTT------------CTCTTGATAGAGAATCAAACAATCGTCGACG
ACAGATGGTACAC---A---GTATATTCTTATCCTCTGCACTCGTATGTATGTATGTATAGGTTGTTGGCATCGCGCACC
TGGCGGTGTCGCTGGGCATCGTGCTGGCCACGGACAAGTACCTGAAGCAGGCGTTCGTGGCGGCGTCCATCAAGTTCCCC
AGCGCCCTCTTCGGCATGTTCTGCATCTTCTCCGTGCTCCTCGTCCTCGACACCGTCGCGCCGGCGCTGGCCAAGGCCTT
CATGGACTTCTTCGAGCCCGCCACGCTCTTCATCCAGCGCTGGCTGCCGCTCTTCTACGTCCCCTCCCTCGTCGTCCTGC
CCCTCGCCGTCAGGGACGTCCCGGCCGCCTCCGGCCTCAAGATCTGCCTCATCACATGTACTCTACCACCACCTAGCATG
CCATTGCCACTCAGTCCTGCC-----ACAAGATTTTTT-ACCTTCACTGACGCTGTCGT------TGCTGCATTTTTCCT
TTTCGTGTGTCGCCGGCAGTCGGTGGCTGGTTCGCCTCGCTCGCGGTGGCGGGGTACACGGCGCTCACCGTGAGGAAGAT
CGTCAAGACGGAGCTCATCGCGGCCGAGCCGATGGGCAAGCCGTCCACCTTCGCGACGTTGGAGTTCTGGGCGTGGGGCG
CCGTCTTCGTCGCCTCCTTCGCCACGGCGTTCGTGAACCCCACGGCGCTTGGCACCACGGCCAGGACGTGCCTCCCGTTC
ATGCTCGCTTCCACTGTACTGGGATACATGGTTGGTTCTGGGTAATTCATCACTATGTCTTTCTACTACGTAACATATTA
C-AC------TCCTATACACTTACAGTTAAGAAGATACCAATACAGACTATACAGTACTATGTACAGGGTTTAGTATTAC
TACTACCACTTCATTTGCATTTGCCTGACTACAGCATGTATGAT-ATGCTATTTTTTCAGGTTACCGCCTGGTATCAAGA
AATTGTTACACCCGATCATCTGCTGCGCGCTTTCCGCGAATTTGTCGGCGGTCGCATACGGGTACCTCTCCGGGTCCGGA
ATCGATGCTGCGCTAGGTTTTAAGCTAAACTTCCCTGCAATCAAATTCTGAATTTATCTGTAGTTTCACAACAGTTGCCT
TGTAATTGCGACCATATATACTCTGCTCTGCTCTAACACAAGTGGTTGGTTGGTTTTGTAGGTGATTACCTGACAAAGGT
GCCATCAAATCCTGGAGCTGGTGACGTCCTGATGGGCTTTCTTGGGTCTGTCATCTTATCATTTGCCTTCTCAATGTTCA
AGCAGAGAAAGGTATGTGTAATTCCCATTGTTATC----------------TTGCAACACTTTTTTGGGAGTAGCTAGAA
CTCATCTAGATGAGACGTAATTTGGTCTCATTCATCTGAAAAACAAGAACGGATATAACCCACGTCAGCACACACGCATC
TTATAGCATCACATCCAATGGCTATAAAAGGTGAATGAGACCAAACTAAATCTCATCTAGATGAGTTCTAGCAAAACTGC
ACTTTTTTTACATTATTTTTTGCGAAAAATCTTGGAACACTGTTACGGTTGCTCTGTATCGAATCC-TGATAACTCGTGT
CGCTGTCGAA---TTCAGCTTGTGAAGAGGCACGCGGCAGAAATTTTCACGTCGATCGCGATTGCGTCGACATTCTCCCT
GTACTCGACAGCCATCCTAGGACGCCTGATTGGGTTGGAGCCAACATTGACCATCTCGATATTGCCAAGGTGTATAACCG
TGGCGTTGGCTCTGAGCATAGTCTCTTTCTTCGAAGGTAATTAAATCAAACCCCCTTGCATTCTCTTCTGTGTAGCTACT
GAATTTGGAATGTGGTGATATAACTAGCTAACTGATGTGCTTTGTGCG-TCGATGATGCAGGTGCAAACACTTCGCTGAC
GGCCGCCGTGGTTGTTCTGACGGGCCTGATTGGCGCCAACTTTGTGCAAGCGGCCATGGATAAGCTTGGCCTCAACGACC
CCATCGCCAGAGGGATCGGAACAGCTTCCAGGTAAACTTGATGAAACTCTGGGATCCTGTCCCTGCGTTCATTCTGAAAG
CATGCTAAATTTGATGGTG------GGTGCAGTGCTCATGGGTTGGGAACCGCGGCGCTGTCGGCCAAGGAGCCTGAGGC
GCTCCCTTTCTGCGCCATCGCCTACGCGCTCACCGGCATTTTCGGCTCATTGATCTGCTCCTCTGCAGCCGTCAGGCAAA
GCCTGGTGTTCATAGCCGGCTGACACACAT--ATACACTGGTATACAGCAACAGCAACAGCTTGTGATGAG-TTTTTTTT
TTCATTTTATAAAAGAATGGTAAGTGCTTGGAGAACAAAAATGCAAAATTTCCTTGG--------------CATGTAAAG
ATGGATGGTTGCAACAAGTCAAGGTGTGAGCAGTACTCCCTTGCTTGTATAGCTGCAAAATGTTCGGTGATTGCTTTTCT
CCATGCGATTTTTCTTCTAAAGGAACAAGAGTAATAGTCTGATTGGTTTGGTGCCAACAATTGG----------------
-------------------TTCTTGTCTCTTTGCATGGCC-CTTTTGCCTATGTGGAGCAGCGAGACAAGTAAAAAGGGA
GGAAGTGAGCTGTCATGTAAGAATCAGCCTCTATATGTCCGCTCATGTAAGAGTCAGCCTCTACACGTGCTCCTAGATAA
GAGGAAGGAGAAAAAGAGAAAGTGCAAAAACTCACTAACTTAAGAGCGACCTTATGACCAACCATATTGTATGAGTGAAT
AATATTGCTAGCTTTTGATGACATGACAGTCTTATAT--------------TATATTATTAACATTGCTCTTAAAAAGTT
GTCAATTTTTGGTAAAAAAATTCAAAACGGAG----GTTTTGCCTCATTCATTAATTAAGAAGAAAAGAGTTG-GTTAAC
TGACGGAAAACCAGACGAAAACCGTCATAATCTTGACCACACATGCGAACTACTCCCAAACTATGGACCCACATGAATCC
CCAATAAACACAGTTAACACAGAATCAGTCCGACACCCAAGCACTTTGGTCACACCAATGGAAACCCATCGACCCACAAC
CACTTGAAAAGGATATAACGACAGAGACAACAGACACATCTGAGCCCACGTCTACAACCTAGACAA--------------
------------------------------------------------------------------------
>SNPs
SSSSS-----------------------------------------------------------------S-----S--S
------------------------------------------------------------------S-------------
S-----S------------------------------S------------------------------------------
--------------------------------S-----------S----------------S------------------
-------------------------------------S---------S--------------------------------
------------------------------------------------------------------------S----S--
-----S------S--------S----------------------------------------------------------
------------S---S----------------SSSS------------------------------S-S------S---
-------S------------------------------S---S-----S-------------------------------
----------------------------------SS-S--SSS-------------------------------------
--------------------S-------------------------------------------------S---------
--S--------------------------S-----------------S---S---S---S-----S---------SS-S-
-----------SSSSSSSS-------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
---------------------------------------------S----------------------------------
----------------------------------------------------------------------------S---
----------------------------------------------S---------------------------------
-----------------SSS-------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SS-----
-------------------------S---------S--S---------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S--SS-------
------------------------------S----------------------SS-----S--S------------S---
---SS----------------------------S----S---S------------------------S------------
-------------------------------------S------------------------------------------
------------------------------------------------------------------------S-------
-------------S---------S--------------------------------------------------------
---------------------------S--------S-----S-------------------------------------
--------------S--------------S-S------SSSS-S-SSS-S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-S------S----
------S-S-SSS-------------S-----------------------------------------------------
---------S--------------------------------------------------S-----------S-------
--------------------------------------S---------S-------------------------------
--------------------------------------------------------S-----S-----------------
--------------------------------------------------------------------------------
----S--S----------------------------------------------S---------------S---------
------------------------------------------S-------------------------------------
---------------S-----------------------------------------------S-----S----------
-----------------------------------S--------------------------------------------
--------------S-----------S----------------------------------------------------S
--------------------------------------------------------------------------------
S--------S---S--------------------------S----S----S--------------SSSSSSSSSSSSSSS
S--------S------S-----------------------S--------------S---S--------------------
-----------S-----S---------S------------S---------------SS----------------------
S-----------------------------S-----------------------SS----------------------S-
----------S--------------------------SSSSSSSSSSSSSS-----------------------S--S--
S-S------------------SSS--SS-SSSSSSS------------S---------------S-SSS-SSSS----S-
----S-S-------S----SS-S--S-S-----------------S------------S------S--------------
----S-------S-S---------S------SS-------S--S------------------------------------
------------------S--S---------S----S--------S----SS-S------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_594
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CGGTCGAGCGTCTTACCTAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2304
--------------------------------------------------------------------------------
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---------------------------------------------------------------GCAGGGTTTAGTACTAC
GGCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_936
--------------------------------------------------------------------------------
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------------------------------------GCCACATACACTTGCGTCAG------------------------
--------------------------------------------------------------------------------
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>reverse_2668
--------------------------------------------------------------------------------
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---------------------------GCTGATGGGTTTTCTGGGGT---------------------------------
--------------------------------------------------------------------------------
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>forward_1866
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-------CACTCAGTCCTGTCCTGCG------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3343
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--------------------------------------------------------------CGCAAACACTTCGCTGAC
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_3051
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-----------------------------------------------------------------------AACTTGTGT
CGCTGTGGGAA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4388
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-------------------------------------------------------------------TTGCCCAGTTAGC
TGACAGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
