CLUSTAL X (1.81) multiple sequence alignment input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 GCACGCCGCCGGAGCGAGAGGGAGGCGCGCGAGGTGGATCGCAACTTCCT chr5A_4 CGCACGCCGA--AGCGAGAGGGAGGCGCGCGAGGTGGATCGCAACTTCCT chr5B_3042 -------------------------------------------------- SNPs SSSSSS-SSSSS-------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TTTTCATCTGGGCGCGGGGGTTTCGATTTGGGAGGCGATTCG-------- chr5A_4 TCTTCTTCTGGGCGCGGGGGGTTCGATTTGGGAGGTGATTCGGGCGATTG chr5B_3042 -------------------------------------------------- SNPs -S---S--------------S--------------S-------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ------------------GAGTTGTTGCCGATCTTTGCTTGTTTCCTCGG chr5A_4 ACTCCGCTATGTTGTTTGGAGTTGTTGCCGACCCTTGTTTTTT----CGG chr5B_3042 -------------------------------------------------- SNPs -------------------------------S-S---S--S--SSSS--- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CGATTCTGTTAGGGCTCGAGCTTTTTGGAGGGAATGTTGGGTTTCGGGGG chr5A_4 CGATTTTGTTCGGGCTCGAGCTTTTTCGAGGGAATGTT-GGGTTCGGGGC chr5B_3042 -------------------------------------------------- SNPs -----S----S---------------S-----------S--S-------S forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TCCGATTCTGGGCTTGCGCTCGCGAGATTTTTTCCTTGGAAATGGCCAGG chr5A_4 TCCGATTTTGGGCTTGCGCTCGCGAGATT-TTTCCTTCGAAATGGCCAAG chr5B_3042 -------------------------------------------------- SNPs -------S---------------------S-------S----------S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TGTACTACTTGTTGCTGCGAATTCCTTTCT-------------------- chr5A_4 TGTACTACTTGTTCCTGCTGCGAATCCTTTCTTCGCTAGGGATTTTTGGG chr5B_3042 -------------------------------------------------- SNPs -------------S----SSSSSSSSS-S--------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -----------------------------------------------CGG chr5A_4 GCTTGCTTTTGATATCTCGAACGCGAGGGGTAGGGAAGGGGATGTGGCGG chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CGCCGCTTCCCGTAGTGACCCGATCGACGCCGACGCGAGAGAGAAGACTC chr5A_4 CGCGGCTTCCCGTGTTGCTC----CGACGCCGAAGCGAGAGAGCTAGTAC chr5B_3042 -------------------------------------------------- SNPs ---S---------SS--SS-SSSS---------S---------SSSSSS- forward_412 ------------------------------------------GAAGACTC reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CGACGCCGATAGACGCCGAC------------------------------ chr5A_4 TTTCCGGTGATTTTATTTGGGCGTGGTCGCTGCACTTTTTGCTCGCAAGC chr5B_3042 -------------------------------------------------- SNPs SSS-SSSSSSSSSSSSSSSS------------------------------ forward_412 CGACGCCGATAG-------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 GTGGCGGTGCTAGAATCCAAAGAGAGGCCCCGCCCGGGAGGTGCCATTTT chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 GTTTCCAAGGACAAAGTCCAATAGCTACAACTAGTTGCGAATCCTTGCCT chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 TTTGAACTCTCGACCTCGAGGTAGGCATCAGCGGCTTCCCGGAGGCAGGC chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -----GCATATGTTTAATTCCCGTCGCGTTCGCTGCACTCAGGTGTTGGA chr5A_4 AGACTGCATATGTTTGATTCCTGTCCCGTTCGCTCG-----GGTGTTGGA chr5B_3042 -------------------------------------------------- SNPs ---------------S-----S---S--------SSSSSSS--------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TTCCACGCGCACGCGTACGTGTTGGATCGACGGTTTGATTTGATTTGGGA chr5A_4 TTCCACGCGCAAGAGTG--------------------------------- chr5B_3042 -------------------------------------------------- SNPs -----------S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TGCTTGCAACATGGTCATATCAGATCAAGCATCTTTGTTTGTGCCTGCAG chr5A_4 -------------------------------------------------- chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TTTGTGGCAATTTGATTTTCAGGCGAGTTTATGGGTGCCCTCTAAGATGT chr5A_4 -------------------------------------------------- chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CAAGCCGTGTGCTTGTTCGCGTCTTGATTGGCTTTGTACTATGTTGGTAT chr5A_4 ---------------------------------TTGGATTATGGTTTGAT chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S----S-SSS-- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TTGGAGAGGGATAGCCTT--TTTAGTTTCCAAACAAGATCGATCGTCGGT chr5A_4 TTGGGGAGAGATTGTTTTAGTTTCCTTCCCAAACGAGATGTGC---CGGT chr5B_3042 -------------------------------------------------- SNPs ----S---S---S-SS-------SS--S------S----SSSSSSS---- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CGTGCTGTCCCTTGCTTATTGTAGCAGCAGTGCTGTCCCTTGCTTATCGT chr5A_4 AGTGCTGTCCCTTGGGA-----------------------TGCTTATTGT chr5B_3042 -------------------------------------------------- SNPs S-------------SSSSSSSSSSSSSSSSSSSSSSSSSS-------S-- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AGGAGTATATTTATT---GCTTTTCTGCCGAGATTGTCTTCAGTCCAGTC chr5A_4 AGGAGTATATTCATGGACGCTTTTCTGCCGAGATTCTCTGCAGTCC---- chr5B_3042 -------------------------------------------------- SNPs -----------S--S--------------------S---S------SSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CCCATCAATGGGATATCTGATTGAGACCGGACGAATCAAGCAGTGCTGGT chr5A_4 --CATCAACGGGATTTCAACACGAGATGACTAGTGCTAGCACAGTACTAG chr5B_3042 -------------------------------------------------- SNPs SS------S-----S--SSSSS----SSSSSS-SSSS-SSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -----------------------AGACCGGACGAATCAAGCAG------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AGTAGTAGTAGTAGTATATACAGTATCTGTTTTTGGGTTCCAGTCCTTGA chr5A_4 TATCTAGTATTTTAGAAGA------------------------------- chr5B_3042 -------------------------------------------------- SNPs SS-SSSSSSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ATTAATGGAGTCGGCGTTTTTTTGGCAGCTCTATATATGCTACTGCTACT chr5A_4 -------------------------------------------TGCTACA chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AGTAACTACTATTGTCG--------------------------------- chr5A_4 TACAACTACTATTGGCGTTGGATATATTCTTCCTCTGTGCAGATTGTTTG chr5B_3042 -------------------------------------------------- SNPs SSS-----------S----------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ----------------------------------CTTGTTTAGTTGTTTC chr5A_4 TTTGTTTGTTTGTTTAGTTCCTTGCGCAGATTGTCTTGTCTGTTTGTTTC chr5B_3042 -------------------------------------------------- SNPs ---------------------------------------S-SS------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 GTTCGTTCCTTTATTG-------ATGCACTTTGGTCGCCATCAGGCTTG- chr5A_4 GTTCGTTCCTTGATGATTGATGCATGCACTTTGGTCGCCATCAGGCTTCT chr5B_3042 -------------------------------------------------- SNPs -----------S--SS--------------------------------S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ---CATTGATTGGCTGACTTTTGTTTG-TTCTTGTTCATTGCAGTAGTA- chr5A_4 TGTCATTAATTGGCTGACTTTTGTTCGTTTCTTGTTCCTTGCAGTAGTAC chr5B_3042 -------------------------------------------------- SNPs -------S-----------------S-----------S------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 ---------------ATGGCTGATCCGCTTGCTCCGGATGCTCTGCCTTC chr5D_1_TraesCS5D01G013800 --GCTACATATAGCTATGGCTGATCCGCTTGCTCCGGATGCTCTGCCTTC chr5A_4 TAGCTATATATAGCTATGGCTGATGTGCTTGCTCCGGCTGCTCTGCCTTA chr5B_3042 -------------------------------------------------- SNPs ------S-----------------SS-----------S-----------S forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CGTGCAAATGGTTGATTGGAGACCCTTGTGCCTAGCAGCGAGGCCATCCC chr5D_1_TraesCS5D01G013800 CGTGCAAATGGTTGATTGGAGACCCTTGTGCCTAGCAGCGAGGCCATCCC chr5A_4 TGTGCAAATGGTTGATTGGAGACCGCTGTGCCTAGAAGCGAGGCCATCCC chr5B_3042 -------------------------------------------------- SNPs S-----------------------SS---------S-------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TGTTCCTCGTCCTCCTCACACCCTTGCCTGGTAACCGGAAAGAGACCAAG chr5D_1_TraesCS5D01G013800 TGTTCCTCGTCCTCCTCACACCCTTGCCTGGTAACCGGAAAGAGACCAAG chr5A_4 TGTTCCTCGTCCTCTTCACACCCTTGCGTGGTAAGCGGAAAGAGACCAAG chr5B_3042 -------------------------------------------------- SNPs --------------S------------S------S--------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 AGGCTCATGGACCAAGCCGGCACCAAGTCTGAGCAAGAGAAGAGGGCAAT chr5D_1_TraesCS5D01G013800 AGGCTCATGGACCAAGCCGGCACCAAGTCTGAGCAAGAGAAGAGGGCAAT chr5A_4 AGGCTCATGGACCAAGCCGGCACCAAGTCCGCGCAAGAGAAGAGGGTACT chr5B_3042 -------------------------------------------------- SNPs -----------------------------S-S--------------S-S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCGTAGATTGAAGTGGTTAACAGAGACCGGACTTGCCTCGCACATCGACG chr5D_1_TraesCS5D01G013800 TCGTAGATTGAAGTGGTTAACAGAGACCGGACTTGCCTCGCACATCGACG chr5A_4 TCGTAAACTCAAGTGGTTAGCAGAGACCGGACTTGCCTCGCACATCGACG chr5B_3042 -------------------------------------------------- SNPs -----S-S-S---------S------------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CCCGGTACCTCTACGTGCTCACATGCGCCCACATCGTCGACCACCTTTTT chr5D_1_TraesCS5D01G013800 CCCGGTACCTCTACGTGCTCACATGCGCCCACATCGTCGACCACCTTTTT chr5A_4 CCCGGTACCTCTACGTGCTGACCTGCGCCCACATCATCGACCATTTGTTT chr5B_3042 -------------------------------------------------- SNPs -------------------S--S------------S-------SS-S--- forward_412 -------------------------------------------------- reverse_1645 --------------------------------------------CTTTTT forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CACGCGGTGGACAGCCCAATCCAAGCAGAGAAGGTGCAGGAGCTGTTCAG chr5D_1_TraesCS5D01G013800 CACGCGGTGGACAGCCCAATCCAAGCAGAGAAGGTGCAGGAGCTGTTCAG chr5A_4 CACGCAGTGCACAGCCCAATCCAAGCAGACAAGGTGAACGAGCTGTTCAG chr5B_3042 -------------------------------------------------- SNPs -----S---S-------------------S------S-S----------- forward_412 -------------------------------------------------- reverse_1645 CACGCGGTGGACAG------------------------------------ forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------TCCAAGCAGAGAAGGTGCAG----------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GGTCGAGGTCACCTGCCACCACGCCGAGAGAGCCTTCATCGAGGGGGGGA chr5D_1_TraesCS5D01G013800 GGTCGAGGTCACCTGCCACCACGCCGAGAGAGCCTTCATCGAGGGGGGGA chr5A_4 GGTCCAGGTCACCTGCCACCACGCCGAGAGAGCCTTCATCGAGGGCGGGA chr5B_3042 -------------------------------------------------- SNPs ----S----------------------------------------S---- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GGGTCGGCGACCGAGCCTACGCGCCGGCGACAGTGTGCGGGATCAACTGC chr5D_1_TraesCS5D01G013800 GGGTCGGCGACCGAGCCTACGCGCCGGCGACAGTGTGCGGGATCAACTGC chr5A_4 GGGTCGGCGACCGCGCCTACGCGCCGGCGACGGTGTGCGGGATCGACTGC chr5B_3042 -------------------------------------------------- SNPs -------------S-----------------S------------S----- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GCCAGCGACCTCATGCTGCTGCGCGTCGACCTCGGCGACCTGCCCCTGAG chr5D_1_TraesCS5D01G013800 GCCAGCGACCTCATGCTGCTGCGCGTCGACCTCGGCGACCTGCCCCTGAG chr5A_4 GCCAGCGACCTCATGCTGCTGCGCGTGGACCTCGGCGCCCTGCCCCTGAG chr5B_3042 -------------------------------------------------- SNPs --------------------------S----------S------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GTTCAACGACGACGGGCAGATGGAGGCGTGCCCGCATCCGCACCCGATCC chr5D_1_TraesCS5D01G013800 GTTCAACGACGACGGGCAGATGGAGGCGTGCCCGCATCCGCACCCGATCC chr5A_4 GTTCAACGACGATGGGCAGATGGAGGCGTGCCCGCATCCGCACCCGATCC chr5B_3042 -------------------------------------------------- SNPs ------------S------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CGCACTTCTCCCCAGAGCAGGTGCCGGCCGCCGCCCAGCTGATGCTGCTT chr5D_1_TraesCS5D01G013800 CGCACTTCTCCCCAGAGCAGGTGCCGGCCGCCGCCCAGCTGATGCTGCTT chr5A_4 CGCACTTCTCCCCACACCATGTGCCGGCCGCCGCCCAGCTGATGCTGCTT chr5B_3042 -------------------------------------------------- SNPs --------------S-S--S------------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCTTGGCCCGAGTTCCGGCCCTGCACGTTGGCCACGGGCCTTTACTGCAT chr5D_1_TraesCS5D01G013800 TCTTGGCCCGAGTTCCGGCCCTGCACGTTGGCCACGGGCCTTTACTGCAT chr5A_4 TCTTGGCCCGAGTTCCGGCCCTGCACGTTGGCCACGGGCCTTTACTGCAT chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GCAGCGGTTTCTGCCTGACATGAGCACCAACCCTGTTGGATACGATCTCT chr5D_1_TraesCS5D01G013800 GCAGCGGTTTCTGCCTGACATGAGCACCAACCCTGTTGGATACGATCTCT chr5A_4 GCAGCGGTTTCTGCCTGACATGAGCACCAACCCTGTTGGATACGATCTCT chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TTCTTCTGGAGGCGTACATGGGAAGCCAGGGGGGCTCCTCAGGAGGGCCG chr5D_1_TraesCS5D01G013800 TTCTTCTGGAGGCGTACATGGGAAGCCAGGGGGGCTCCTCAGGAGGGCCG chr5A_4 TTCTTCTGGAGGCGTACATGGGAAGCCAGGGGGGCTCCTCAGGAGGGCCG chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CTGTTCGATTCTTTCCGGCGGGTCAAGGGCATCCTTCACGGCGGCTCTGG chr5D_1_TraesCS5D01G013800 CTGTTCGATTCTTTCCGGCGGGTCAAGGGCATCCTTCACGGCGGCTCTGG chr5A_4 CTGTTCGATTCTTTCCGGCGGGTCAAGGGCATCCTTCACGGCGGCTCCGG chr5B_3042 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CGGACCGCACTCCCACTTTATCCCGTCCAGAATCATTCTCCCTTTCATCC chr5D_1_TraesCS5D01G013800 CGGACCGCACTCCCACTTTATCCCGTCCAGAATCATTCTCCCTTTCATCC chr5A_4 CGGACCGCACTCCCACTTTATCCCGTCCAGACTCATTCTCCCTTTCATCC chr5B_3042 -------------------------------------------------- SNPs -------------------------------S------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 AGGCGTACGCGGTCCCTCCAAAGCCTCCAGCCCCAGCTCCCTCTGCAGAT chr5D_1_TraesCS5D01G013800 AGGCGTACGCGGTCCCTCCAAAGCCTCCAGCCCCAGCTCCCTCTGCAGAT chr5A_4 AGGCCTACGCGGTCCCTCCAAAGCCTCCAGCCCCAGCTCCCTCTGCAGAT chr5B_3042 -------------------------------------------------- SNPs ----S--------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GACAAGCCAGGTCCTCCTCCGGGGCCGGGAGAT------CGCAAGCGCGG chr5D_1_TraesCS5D01G013800 GACAAGCCAGGTCCTCCTCCGGGGCCGGGAGAT------CGCAAGCGCGG chr5A_4 GACAAGCCAGGCCCTCCTCCGGGGCCGGGACCGGGAGACCGCAAGCGCGG chr5B_3042 -------------------------------------------------- SNPs -----------S------------------SSS----------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CCCCCCAAAAGATGACAAGTCTGGTGGCTCCAAGCGACGCCTGTCTTCTG chr5D_1_TraesCS5D01G013800 CCCCCCAAAAGATGACAAGTCTGGTGGCTCCAAGCGACGCCTGTCTTCTG chr5A_4 CCCCCCCAAAGATGACAAGTCGGGTGGCTCCAAGCGACGTCTCTCTTCTG chr5B_3042 -------------------------------------------------- SNPs ------S--------------S-----------------S--S------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GTTCCCAAGGCAAGAGCAGCAAGTCCGCTGCTGCTGCAGGTGGGTACGGC chr5D_1_TraesCS5D01G013800 GTTCCCAAGGCAAGAGCAGCAAGTCCGCTGCTGCTGCAGGTGGGTACGGC chr5A_4 GTTCCCAAGGCATGAGCAGCAAGTCCGCTGCTGCTGCAGGTGGGCACCGC chr5B_3042 -------------------------------------------------- SNPs ------------S-------------------------------S--S-- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CGCCGGCAATACGTGCTCAATCCCGGCGATGACTGTTATTGATGATGCAT chr5D_1_TraesCS5D01G013800 CGCCGGCAATACGTGCTCAATCCCGGCGATGACTGTTATTGATGATGCAT chr5A_4 CGCCGGCGATACGTGCTCAATCCCGGCGATGACTGTTATTGATGATGC-- chr5B_3042 -------------------------------------------------- SNPs -------S----------------------------------------SS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCTATTCTAGACCCAGTCCCACACCCAGACTGAGACGATCGACGCCAGAC chr5D_1_TraesCS5D01G013800 TCTATTCTAGACCCAGTCCCACACCCAGACTGAGACGATCGACGCCAGAC chr5A_4 ---ATTCTAGACCCAGTCCCACACCCAGACCCAGACGATCGACGCCGGCC chr5B_3042 -------------------------------------------------- SNPs SSS---------------------------SS--------------S-S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 AAAAACTCCG----------------------ACTTGTCTGTTTATTTGG chr5D_1_TraesCS5D01G013800 AAAAACTCCG----------------------ACTTGTCTGTTTATTTGG chr5A_4 AAAAACTCTGACTTGGTTATTTGGTTCCCAAAACTTGTCTGTTTATTTGG chr5B_3042 -------------------------------------------------- SNPs --------S----------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TTCCCAAGACGGAGAGCAGGTCCGCTGCAGCAGCAGGTGGATCCCGGCGA chr5D_1_TraesCS5D01G013800 TTCCCAAGACGGAGAGCAGGTCCGCTGCAGCAGCAGGTGGATCCCGGCGA chr5A_4 TTCCCAAGACGGAGAGCAGGTCCGCTGCAGCAGCAGGTGGATCCCGGCGA chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TGCTAGCT------GAGAGAGAGACTACCTACCCTACCCTACGCTACCCA chr5D_1_TraesCS5D01G013800 TGCTAGCT------GAGAGAGAGACTACCTACCCTACCCTACGCTACCCA chr5A_4 TGCTATGTATCCCAGAGAGAGAGGCTACCTACCCTACCCTACGCTACCCA chr5B_3042 -------------------------------------------------- SNPs -----SS----------------S-------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GCGAGATGATCGACG-----------CCACTTATCGGTTTATTT--GGTT chr5D_1_TraesCS5D01G013800 GCGAGATGATCGACG-----------CCACTTATCGGTTTATTT--GGTT chr5A_4 GCGAGATGATCGACGCCACTTATATTCCACTTATCGGTTTATTTTTGGTT chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 ATTATCCATTCTTAGTATCCATCCGAGATGGACGATAAAAATAGATCGAC chr5D_1_TraesCS5D01G013800 ATTATCCATTCTTAGTATCCATCCGAGATGGACGATAAAAATAGATCGAC chr5A_4 ATTATTCATTCGTAGCATCCATCCGAGACGGACGAT-AAAACAGATCGAT chr5B_3042 -------------------------------------------------- SNPs -----S-----S---S------------S-------S----S-------S forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GATATAGTGCGTGGTAATACTACCTCCTTCCGAGTTTATTGGACCCCTTC chr5D_1_TraesCS5D01G013800 GATATAGTGCGTGGTAATACTACCTCCTTCCGAGTTTATTGGACCCCTTC chr5A_4 GATATAGTGCGTGGTAGTACTACCCCCGT-CGAGTTTATTGGACCCCTTC chr5B_3042 -------------------------------------------------- SNPs ----------------S-------S--S-S-------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GTATTTTGGTCCAAATTTTGACCATTTATATACTATTAAAATATAAAG-- chr5D_1_TraesCS5D01G013800 GTATTTTGGTCCAAATTTTGACCATTTATATACTATTAAAATATAAAG-- chr5A_4 ATATTTTGGTCCAGATTTTGACCATTTATATACTACTAAAATATAAAGTA chr5B_3042 -------------------------------------------------- SNPs S------------S---------------------S-------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 CTCCCTCTGTAAACTAATATAAGACCGTTTAAATCACTATTTTAGTATTC chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -----------------------------------TATATGCTATAAAAA chr5D_1_TraesCS5D01G013800 -----------------------------------TATATGCTATAAAAA chr5A_4 TAAACGCTTTTATATTAGTTTATGAAGGGAGTATATATATGCTATAAAAA chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 ATTATACTGTTGAATTTGCATTTGAAAGAGCTTTCCGACAATATAATTTT chr5D_1_TraesCS5D01G013800 ATTATACTGTTGAATTTGCATTTGAAAGAGCTTTCCGACAATATAATTTT chr5A_4 ATTATACTGTTGGATTTGTATTTGACAGAGCTTTCCAACAATATTATTTT chr5B_3042 -------------------------------------------------- SNPs ------------S-----S------S----------S-------S----- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCTGACATATATTTTACATTTTGTTAGTTAAATGTTTAACTCAAAATTTA chr5D_1_TraesCS5D01G013800 TCTGACATATATTTTACATTTTGTTAGTTAAATGTTTAACTCAAAATTTA chr5A_4 TGTGACATATAGTTTACATTTTGTTAGTTAAATGTTTAAGTCAAATTTTA chr5B_3042 -------------------------------------------------- SNPs -S---------S---------------------------S-----S---- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GCCCAAAATAAGAGAGAGGTATATATT-----------------TATAAT chr5D_1_TraesCS5D01G013800 GCCCAAAATAAGAGAGAGGTATATATT-----------------TATAAT chr5A_4 GCCCAAAATAAGAGGGGGTCCAATAAACCCGGACGGAGGTAGTATATACT chr5B_3042 -------------------------------------------------- SNPs --------------S-S-SSSS---SS---------------------S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TGTTTAATTCCAAAACTTGTTTTGCGCCCGT-GGGTGGAGCCAATACTAG chr5D_1_TraesCS5D01G013800 TGTTTAATTCCAAAACTTGTTTTGCGCCCGT-GGGTGGAGCCAATACTAG chr5A_4 TGTTTAATTTCAAAAGTTGTTTTGCGCCCCGCGGGTGGAGCCAATACTAG chr5B_3042 -------------------------------------------------- SNPs ---------S-----S-------------SS------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCAGGTACAAAGTTTTAAATAGCGCGCTAAGCCTCTTAGCGGCGGACCTC chr5D_1_TraesCS5D01G013800 TCAGGTACAAAGTTTTAAATAGCGCGCTAAGCCTCTTAGCGGCGGACCTC chr5A_4 TCAGA--------------------------------------------- chr5B_3042 -------------------------------------------------- SNPs ----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 ----------------AAATAGCGCGCTAAGCCTCT-------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 ----------------AAATAGCGCGCTAAGCCTCT-------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TTCTAAATGCTATAGCGTGCTATAGCGAGCTATTTAAAATGTTTGCTCAT chr5D_1_TraesCS5D01G013800 TTCTAAATGCTATAGCGTGCTATAGCGAGCTATTTAAAATGTTTGCTCAT chr5A_4 -------------------------------------------------- chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GTGTTTGGACAAAAGACCTTTAGCGTAGGACCTCTTTTAAACGGTATAGC chr5D_1_TraesCS5D01G013800 GTGTTTGGACAAAAGACCTTTAGCGTAGGACCTCTTTTAAACGGTATAGC chr5A_4 -------------------------------------------------- chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GTGCTATAGAGGAGCTATAGCGGGCTATTTAAAACCATGGTCAGGTATCG chr5D_1_TraesCS5D01G013800 GTGCTATAGAGGAGCTATAGCGGGCTATTTAAAACCATGGTCAGGTATCG chr5A_4 ---------------------------------------------TATCG chr5B_3042 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 ----------------------------------CCATGGTCAGGTATCG forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCCGGCAGTCCACTTTTTCCCCTTGGCTTCTCAGCTCCGCGACCTAGATA chr5D_1_TraesCS5D01G013800 TCCGGCAGTCCACTTTTTCCCCTTGGCTTCTCAGCTCCGCGACCTAGATA chr5A_4 TCCGGCCGTCCACCTTTTCCCCTTGGCTTCTCAGCGCCGTGACCTAGATA chr5B_3042 -------------------------------------------------- SNPs ------S------S---------------------S---S---------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 TCCG---------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GATAGATATAGATGGCGCTCATCTTCATCAGCTTCTCCAACCGATCGGAG chr5D_1_TraesCS5D01G013800 GATAGATATAGATGGCGCTCATCTTCATCAGCTTCTCCAACCGATCGGAG chr5A_4 GATAC-TATAGATGGCGCTCATCTTCATTAGCTTCTCCAACCGATCGAAG chr5B_3042 -------------------------------------------------- SNPs ----SS----------------------S------------------S-- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 GGAGGGGGAGGCCTTGCCGATGTCGTCCGCCGGCCGAACCGGCCTCCTCT chr5D_1_TraesCS5D01G013800 GGAGGGGGAGGCCTTGCCGATGTCGTCCGCCGGCCGAACCGGCCTCCTCT chr5A_4 AGGAGGGAGA------------------------------GGCCTCCTCT chr5B_3042 -------------------------------------------------- SNPs S-SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TCCACCCGTTGTCCTCG----CCGGCGGGGTGCCTGCTGGATCGTAGCAA chr5D_1_TraesCS5D01G013800 TCCACCCGTTGTCCTCG----CCGGCGGGGTGCCTGCTGGATCGTAGCAA chr5A_4 TCCACCCGTTCTCCTCGATCGCCGGCGGGATGCCTGCTGGATCGGAGCAA chr5B_3042 -------------------------------------------------- SNPs ----------S------------------S--------------S----- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CTACTTTGGCTCTCCACGACCTATAC-TTGACTTGCCTTAACCATAGTCA chr5D_1_TraesCS5D01G013800 CTACTTTGGCTCTCCACGACCTATAC-TTGACTTGCCTTAACCATAGTCA chr5A_4 CTACTTTGGCTCTCCACGACCTATACTTTGACTTGCCTTAACCATAGTCA chr5B_3042 ------------TCCAAGACCTATCGTTTGGCTTGCCTAAACATAGTCTA SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 ACATG----TAGCACTCATGTCGATTGTAATGTTAGGTTCAAATTAA--- chr5D_1_TraesCS5D01G013800 ACATG----TAGCACTCATGTCGATTGTAATGTTAGGTTCAAATTAA--- chr5A_4 ACATG----TAGCACTCATGTGGATTGTAATGTTATGTTACAACTAACAA chr5B_3042 ACATATATATAGCACTCATGTGGATTGTAATGTTAGGTTAGAATTAA--- SNPs ---------------------S-----------------SS--------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 AAAGGTTCGTGCGTTGCAACGGGAGAAAAAAAATCCTCTCATATCTCTAG chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 TTGGGTCAGTTGGACAAATTGTGCGTGGCCGCTTCACAGGTTATGAGATC chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 GAACCCTCCCATCGGCAATTTTATTTTTTGCCAGCTCTCCGGACCTGGGC chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 CTCAGTGCGCCGCCAGGTGGGCTTTTTAGTTGGGCCAAAATGGATGGCAA chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 GTAACGAAACCAAATAACATACGTGAAATTAATTGAAGCGGGACCAAACG chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 AAGCGGGACGAAACCAACAATATTACCTCTCTTTTAATATTAAAAAATAG chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 --------------TCAACGTGGAAGAATGGATAATTAAAACTTGCTTAT chr5D_1_TraesCS5D01G013800 --------------TCAACGTGGAAGAATGGATAATTAAAACTTGCTTAT chr5A_4 TAGGTATAGATTAATCAACACGGAAGAATGGATAATTAAAACTTGCTTAT chr5B_3042 --------------TCAACACCCAAAAATGGATAATTAAAACCTGCTTAT SNPs -------------------SS----------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 CCCACTTTCCTTTTTTTTGC---GGGAGTGTTTGTCCATGGTTAAGAGTT chr5D_1_TraesCS5D01G013800 CCCACTTTCCTTTTTTTTGC---GGGAGTGTTTGTCCATGGTTAAGAGTT chr5A_4 CCCACTTTCCTTTTTTTTTGTGTGGGAGTGTTTGTCCATAGTTAAGAGTT chr5B_3042 CCCACTCC------TTTTTGTGTGT--GTGTTTGTCCATGGTTCAGAGTT SNPs ------------------SS------------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 AGGATTCCCTTGTTTACACTAGAATTTTTCAGTTTCCTCCATTAAGAAAA chr5D_1_TraesCS5D01G013800 AGGATTCCCTTGTTTACACTAGAATTTTTCAGTTTCCTCCATTAAGAAAA chr5A_4 AGGATTCCCTTGTTTACATTAGAAATTTTCCGTTTCCTCTATT---AAGA chr5B_3042 AGGATTCCCTTGTTTTACATTGGAATTTTCAGTTTCTGTTAAGA--AAAA SNPs ------------------S-----S--------------S----SS---- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 AAAAAACAATGGTATTGTCCATGACTAGCAAAACAGAGCGGTTAATTGCC chr5D_1_TraesCS5D01G013800 AAAAAACAATGGTATTGTCCATGACTAGCAAAACAGAGCGGTTAATTGCC chr5A_4 AAAAAACAATGGTATTGTCCATGACTAGCAAAACAGAGCGGTTAATTGCC chr5B_3042 GAAAAACAATTGTATTGCCCATGACTAGTAAAATACAGCAGTGAATTGCC SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 TTATTGTGTGTCCATGACTAGCAAAATAGATGTTTTCTGCCTGCTAGGT- chr5D_1_TraesCS5D01G013800 TTATTGTGTGTCCATGACTAGCAAAATAGATGTTTTCTGCCTGCTAGGT- chr5A_4 TTATTGTGTGTCCATGACTAGCAAAATAGATATTTTCTGCCTGCTAGGT- chr5B_3042 TTACTATGTATATATGTTCAGGCT-ATAGATACTTTTTGTCTACTAGGTT SNPs -------------------------------S------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 --TAATCCTAACTGTTACTTTCTTCCATGTTCAGAACCAGAGGTATTGTC chr5D_1_TraesCS5D01G013800 --TAATCCTAACTGTTACTTTCTTCCATGTTCAGAACCAGAGGTATTGTC chr5A_4 --TAATCCTAACTGTTACTTTCTTCCATGTTCAGAACCAGAGGTATTGTC chr5B_3042 AATAATCCTCACTGTTGCTATCTTCCATGTTCAGAACCAGAGGTATTGTC SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 ATCTCATTGGAAGATGGCATGTTCAAGTTCCTCTGCTTAA---------- chr5D_1_TraesCS5D01G013800 ATCTCATTGGAAGATGGCATGTTCAAGTTCCTCTGCTTAACTAGATTTGC chr5A_4 ATCTCATTGGAAGATGGCATGTTCAAGTTCCTCTGCTTAACTAGATTTGC chr5B_3042 ATCTCACTTGAAGATGGCACATTCAAGTTCCTTGGCTTAACTAGAATTGT SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CAACGATGATGTTCCTCGGACCGCAAGGCTATTCTCTGGGACTAGAACTC chr5A_4 CAACGATGATGTTCCTCTGACCGCAAGGCTATTCTCTGGGACTAGAACTC chr5B_3042 CAACGATGATGTTCCTCTCGCCGGAACATGCTGGGAGGAATCGTGTATCT SNPs -----------------S-------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 GGGGCGTTTTTCTACTTACAAATTGTCAGAATATTTGATATGGAATGTCC chr5A_4 AGGGCGTTTTTGTACTTACAAATTGTCAGAATATTTCATATGGGATGTCC chr5B_3042 TAT----------------------------------------------- SNPs S----------S------------------------S------S------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ATTGTCTCAGAATTACTGCTACATTTCCGGAACCATGCCTAATCATCAAA chr5A_4 ATTGTCTCAGAATTACTGCTACATTTCCAGAACCATGCCTAATCATCAGA chr5B_3042 -------------------------------------------------- SNPs ----------------------------S-------------------S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 CTGAAGCACATATTGGTGGAATCTAATAATCGCTTCTAGGTAAACTCGCT chr5A_4 CTGAAGCACATATGGGTGGAATCTAATAATCGCTTCTAGGTAAACTCGCT chr5B_3042 -------------------------------------------------- SNPs -------------S------------------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AGCCAGTACTGCTTATCGTTTATCACTTCCAGGTAAACTCGCTAGCTAGT chr5A_4 AGCCAGTACTGCTTGTCGCTTATCACTTCCAGGTAAACTCGCTAGCCAGT chr5B_3042 -------------------------------------------------- SNPs --------------S---S---------------------------S--- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ACTGCTTCTCGCTTATAAACTCGCTAGCCAGTA--CTCAATATCCATGGT chr5A_4 GCTGCTTATCGCTTATAAACTCGCTAGCCAGTATACTCAATATCCATGGT chr5B_3042 -------------------------------------------------- SNPs S------S------------------------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AATGATCTACTTGTGCTTGTCATCCAGAATGTGTGCTAAACAAACCTTGC chr5A_4 AATGATCTACTTGTGCTTGTCATCCAGAATGTGTGCTAAACAAACCTTGC chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ACATGTGTAGCTTACTTGGAGATTCTGGGAGAAGTTTTCCTTTGAGGTTC chr5A_4 ACATGTGTAGCTTACATGGAGATTCTGGGAGAAGTTTTCCTTTGAGGTTC chr5B_3042 ----------------------------------TTTTCATTTGAGGTTC SNPs ---------------S---------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 GCTAGCAAGCAGAGGAGGTGACAGTCATTAAGATTGGTGGCACGTTGCAA chr5A_4 GCTAGCAAGCAGAGGAGGTGACAGTCATTAAGATTGGTGGCACGTTGCAA chr5B_3042 GCTGGGTAACAGACGATGTGACACTCATTAAGATTGTTGGCATGTTGCAA SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AGCTCACCTTTATCAAATGTTCTTCCGGTTGCAAAAAAGCT--------- chr5A_4 AGCTCACCTTTATCAAATGTTCTTCTGGTTGCAAAAAAGCT--------- chr5B_3042 AGCTCTCCTTTATCAAATGTTCTTCTGGTTGNNNNNNNNNNNNNNNNNNN SNPs -------------------------S------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 -------------------------------------------------- chr5B_3042 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 -------------------------------------------------- chr5B_3042 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 -------------------------------------------------- chr5B_3042 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 -------------------------------------------------- chr5A_4 -------------------------------------------------- chr5B_3042 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ----------------TCCGAAATTATGCTGTCAAGTGCACGATATGCAG chr5A_4 ----------------TCCAAAATTATGCTGTCAAGTGCACGATATGCAG chr5B_3042 NNNNNNNNNNNNNNNNTCCAAAATCATGCTGTCAAGCGCACGATATGCAG SNPs -------------------S------------------------------ forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AAAGACTC-------------------------------------TGTAC chr5A_4 AAAGACTC-------------------------------------TTTAC chr5B_3042 AAAGACAATGTACTAACTCTCACAACAACAACAACAAAGCCTTAATGTAC SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TAACTCTCACTAACTTAGGTAAAACTCTCCCCATTTTCTTCATGGCAATT chr5A_4 TAACTCTCACTAACTTAGGTAAAACTCTCCCCATTTTCTTCTTGGCCATT chr5B_3042 TAACTCTCACTAACTTAGGTAAAACTCTTCCCATTTTCTT---------- SNPs -----------------------------------------S----S--- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TTCACTGTTTTGTCTACTGCAGGCACTGTAAGATGGATAACTTTGATGCT chr5A_4 TTCACTGTTTTGTCTGCTGCAGGCACTGTAAGATGGATAACTTTGATGCT chr5B_3042 -------------------------------------------------- SNPs ---------------S---------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 ---------------ACTGCAGGCACTGTAAGATGG-------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AAGTTGTTGTCAAACAGGAGCCTTTGCTGGCTTCATATGGGTGATGGACA chr5A_4 AAGTTGTTGTCAAACAGGAGCCTTTGCTGGCTTCATATGGGTGATGGACA chr5B_3042 -------------------------------------------------- SNPs -------------------------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AAGGGCTTTTGATGATGCAGCTAAATGCAAAAGGCTGCTTCCAAAGTGGG chr5A_4 AAGAGCTTTTGATGATGCAGCTAAATGCAAAAGGCTGCGTCCAAAGTGGG chr5B_3042 -------------------------------------------------- SNPs ---S----------------------------------S----------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AAGAGGTGAACTATCGGCAAGGAACAGCTCTAGTGTTCATGAAGGTGCAA chr5A_4 AAGAGGTGAACTATCGGCAAGGAACAGCTCTAATGTTCATAAAGGTGCAA chr5B_3042 -------------------------------------------------- SNPs --------------------------------S-------S--------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 TAGAAGATGGAGTTCAAAGTTCAAACTGACGATGTCATCGCTCCTTTCAT chr5A_4 TAGAAGATGGAGTTCAAAGTTCAAACTGATGATGTCATTGCTTCTTTCAT chr5B_3042 -------------------------------------------------- SNPs -----------------------------S--------S---S------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 ATCTGCTATAATTGATTCTGATGTGCGCTTGCCTTCCTTAGGAGTATGCT chr5A_4 ATCTGCTATAGTTGATTCTGATGTGCGCTTGCCTTCCTTAGGAGTATGAT chr5B_3042 -------------------------------------------------- SNPs ----------S-------------------------------------S- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 GCTGCGCATTCCGCACTCCCGCGCGCTTTAGAGTTGGACCCGGAAAGTGA chr5A_4 GCTGCGCATTCCGCACTCTCGCGCGCTTTAGAGTTGGACCCGGAAAGTGA chr5B_3042 -------------------------------------------------- SNPs ------------------S------------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 -------------------------------------------------- chr5D_1_TraesCS5D01G013800 AGAGACCGAGAAATTATTCTAGTATGAAATCCATGTTTCATCTCGTTTTT chr5A_4 AGAGACCGACAAATTATTCTGGTATGAAATCCATGTTTCATCTCGTTTTT chr5B_3042 -------------------------------------------------- SNPs ---------S----------S----------------------------- forward_412 -------------------------------------------------- reverse_1645 -------------------------------------------------- forward_1043 -------------------------------------------------- reverse_3167 -------------------------------------------------- forward_1689 -------------------------------------------------- reverse_3335 -------------------------------------------------- forward_3186 -------------------------------------------------- reverse_5166 -------------------------------------------------- input_sequence_32807 ---- chr5D_1_TraesCS5D01G013800 CCCT chr5A_4 TCCT chr5B_3042 ---- SNPs S--- forward_412 ---- reverse_1645 ---- forward_1043 ---- reverse_3167 ---- forward_1689 ---- reverse_3335 ---- forward_3186 ---- reverse_5166 ----