>input_sequence_32620
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------------------------------ATGGAGAGCGGTAGCGCGCGGGCCGTCCCGCCGTCGAAGTCCTCCGAGAG
GAGAGTAACCTTCGGCGACGAAGATTCAACCGAAGAGAAGAGAAGAAAGATCGAGAGCGGCAGCGCGCGAGCCGTCGCGT
CGGCGGGGGCTCCGCGGAGCAGAGTGCCCTCGGGTGAGGACGGGCGCCCGCTCGACAGCGTGATGCGCGCCAGCCTCATT
CGCCACTTGAAGCATGGCGACGGCTCTATCTTCAGAAGCAACGGTTATTGGACCAAAGTTTATCGTCTCCAAGATACCAG
CGAGAGTACGTACGTAATTTTTTTCATCT-TATGATTGCTGAATGGCTCCA-----------------------------
------------ATGTAGGAGGTTGGCTCCCGGTTTCCTTGAACTTTCTGTATGTACTAGGAGACCACTAAGGTTTCACT
TCAT--------------------------------GATTTAGTTTACACCTTACAACCAGCAACAACTCAAATA---TT
TGTTTCAGTAAAAACCAAAGACACAC-CCTCTGCATTTTGCAAGATTTTGG-----------------------------
--------CAAAATCCTAAAAGCACCTCTTTTATCCTGTGGCCAAAATC-------------------------------
------------------ATAAGATGTGTATAAAAAGTTAAATGTTTATATATATGTTTGATCAGGTTTATAGAAAATTA
TATCCACAGCTATGATATACAGTATCAAATAACTGAATGTGAAAATAT-----ATGGTAAATCTAGTGATACTATTTTAG
TGTTACAGTTCTTGATATTTTACTCTCTATAAACTTGGTCACTTGGTCAATCACAGATAAGTTTGACTTCTCTGAAAATT
AACGAACGGATGGTATTTAAAGTAGAGGTGCTATATGATCTAAAAAGATGGCTAAGAGCATCTACAAGCACTGTTTCTGT
TGATTAGAAAACCCACAGCCACCTATCGATCGAAGTAGGGATGCTATATGATTTCAAGAAATGGCGCTACTGAGCATTTG
TAATCACTTGTT-CTGTTTATTATAGACCATTTAAACGCATGGATCCTCATGATTGCATTGTATTTCTTTTTTTATTTAG
CTTGCCTATTATTAAATCAAGATTGTCTTTTTGGATGAGTAGGAGGATCTAACCCCATTTTAATCAATCTCGACCCACTG
TTTTCAAATTTTG---TATTGCTTGTCCTAAAGAGGCCACGTGAT-----------------------------------
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---TCACAGTTTCTAGATTAAAAAGACTGTGCAGCTTTATTTAAGAAAGCTCTTGCATTTATATATTCTGCACAAATGTT
TGAACTTTCTCATTCTCATGAAAGACAAATAATGCTCCAAATATTTAGTTTCCTCTGATTTTCTCTAGTCATCAATTTAT
TTTGTGACCGGACCACAGAAATATATATGCACAGTTAGTGCAAACTGTGATTGATATG---TTTTTAACCTAAACTTCAG
GATATCGATAATATTGCGTTGATAATTTGTAAGCTTAATATTATCATAATTCTGTTTTGGTTCCACTTTCTAGCCTTGCT
TGCATCAATCTATGTATCCTGCCACTCGTTCTCTTCATCTCCTTTTAATTGAAATTTTGGGGTTAACAATTTTTATAATC
TACTGCATGTACAATTCCCATTGCTTCTCAATCAGCTTGTCTGGAGCCAATGATGATGACCGAGCCATTAGCCTCCTGCA
TGCCTGACAGGATGGTTTGTGAAAGGCAACATTTTCGCACCATGCTGCAGATATTCTCCCTGAAGCTAGCTTACACTTCT
TCACATGTTACTGGCCCGGTCCAGTTGTACGGATACGTGGCTGTCAGGGATCTTTTGAACCCTATGCGTAACTACATCTT
CAACCGCACAAGGGATGATCCTTTCGTCGTGGAGCATGACGGCCTTATCCGAATGTCCGGCCCTAAGAGGGGCATCAGAA
TGGGGGCTCCCGTGCTGATTGAGTTCGACATGAAGGTCAAGAGAGGAGTCGGAGAAGCAGAAGATGATTTACAGCTCGTC
GATTGCGTTGCCTGCCTCAACGACATAACCTCGAGACATGCTACGAAGAACAGAAGACGGATCGATGGCGATTGCGGGGC
GGTGGACATAGCCTATGCGCTTCTGAGGGGCGCCGCGGAGGCCACCGTGCAGGTTGGGATATCAGAGCTGGCACAGGACA
GTGGCTTGATAAGGCTGAACGCAGCATTGTTTTACACCAAGGAGTTGAGCGCGCAGATCCAGCTGTTTGACGGAGTTGTC
GCCGCCGAGGCGACTGAGCTTTGCAGGACTGTGCTTGCCGTGGCGAAGGGAGGTCAGTTGCTTGTATCGTTGATGCTCGA
TCAGACTGGTGGCTCGGGTGATTGCGCTTTCAGTCGTAGCTGCACCTTCCCTGTTCAAAAGCATGGAAACCATGTCTCCG
TTTTCAAGCTTGGGCTGGCGGCTGTCGAGGTGAAGGTAACCTGGTCGACTCTGGACATCCCCGGAAGCCTTTTGGGTCCA
AATTGCTTCCAGTGGGAGTTCATGGCAGCTGAGGACGTTGAGTATGAAGGTGACTGA-----------------------
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>chr3A_1_TraesCS3A01G109400
GTTGTTTTGGCTCTGGGGAGCATATGCTTCCGGATGAATAGTAAACT-TAAACAAATAGTAAATAAATTTTAAGAATTCT
ATTTTTTTATGTAGATGTTCATGATAGTGTAA-AAATGTGCTTGACAATTTTCATGCGAAACGGTGTAACATTTGGAGGT
AACATTCGAATGTTTGAAAAAAAA-TTCACAGGTCAATACGTTTAAGCTTTCGCCCTAAAAATTTAGGGATAGCATTTGG
ACGTGACAATAAACACATGTATTCTTAAAAAGTA----ACAATTACAAAATACATTTTTGGCGAGTAGGAGCATTTGCTC
CCTAGAGCCAAATTGGATTTACGCATTCCATGGTTCTTCAAAGTTCATGAATTGGGCTTTTGTTTCCTGGGAGCTCCTAT
TCCACGCTTTATGAGCGAATAACCCCTATAGTGCGCTGTGGACCAGCAGCCCATCTAGCGTTCAGTGA------------
-------TTTTTT--ACTTCAGTTGGTTTTTCATCCACCTTTTTTTTTTGTTTTGGTTGACATTTTCTTAGGAAATTTTT
AATATTAAAAGATACATGAACCA-AATTTTTTTGTGGATTTAAATAATAC-AAAACACAATTACAAATTTG---------
----TCACATAAATTTTAAACAGCA-----------------------------TAAAAACTAATTTAAATGCTCATGAA
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----------------------TTTAAATAATGTCATGGATTCAAAAAATTGAA-AAACTTCAAAAATTCATAAAAGTAC
ACAATATTCGGAATCATTTTTAAAATATTTATTTAAAAAATTATACATAATGTAAAAATGAAAACAAAGAAAATGAGAAA
ACAA---AAAAGAAAAAGAACAAACATTAGCCGATATGCG----------------------------------------
------------AAATCAAACACGCACCCAAACCCTAACCAAACAAATCCAAACTAGGGGGGAAAAGGTGATGGGGAGCC
GCGGCGTACAAGCGCCGTCGTCGATCGGTGCCTGCGGAGTAAAAACGTATTACTAGAATGACCTGGGGCGAGGACAATCC
GATCGAAGGAAGAAAAGAGAAGAGGCCGGGATGGAGAGCGGTAGCGCGCGGGCCGTCCCGCCGTCGAAGTCCTCCGAGAG
GAGAGTAACCTTCGGCGACGAAGATTCAACCGAAGAGAAGAGAAGAAAGATCGAGAGCGGCAGCGCGCGAGCCGTCGCGT
CGGCGGGGGCTCCGCGGAGCAGAGTGCCCTCGGGTGAGGACGGGCGCCCGCTCGACAGCGTGATGCGCGCCAGCCTCATT
CGCCACTTGAAGCATGGCGACGGCTCTATCTTCAGAAGCAACGGTTATTGGACCAAAGTTTATCGTCTCCAAGATACCAG
CGAGAGTACGTACGTAATTTTTTTCATCT-TATGATTGCTGAATGGCTCCA-----------------------------
------------ATGTAGGAGGTTGGCTCCCGGTTTCCTTGAACTTTCTGTATGTACTAGGAGACCACTAAGGTTTCACT
TCAT--------------------------------GATTTAGTTTACACCTTACAACCAGCAACAACTCAAATA---TT
TGTTTCAGTAAAAACCAAAGACACAC-CCTCTGCATTTTGCAAGATTTTGG-----------------------------
--------CAAAATCCTAAAAGCACCTCTTTTATCCTGTGGCCAAAATC-------------------------------
------------------ATAAGATGTGTATAAAAAGTTAAATGTTTATATATATGTTTGATCAGGTTTATAGAAAATTA
TATCCACAGCTATGATATACAGTATCAAATAACTGAATGTGAAAATAT-----ATGGTAAATCTAGTGATACTATTTTAG
TGTTACAGTTCTTGATATTTTACTCTCTATAAACTTGGTCACTTGGTCAATCACAGATAAGTTTGACTTCTCTGAAAATT
AACGAACGGATGGTATTTAAAGTAGAGGTGCTATATGATCTAAAAAGATGGCTAAGAGCATCTACAAGCACTGTTTCTGT
TGATTAGAAAACCCACAGCCACCTATCGATCGAAGTAGGGATGCTATATGATTTCAAGAAATGGCGCTACTGAGCATTTG
TAATCACTTGTT-CTGTTTATTATAGACCATTTAAACGCATGGATCCTCATGATTGCATTGTATTTCTTTTTTTATTTAG
CTTGCCTATTATTAAATCAAGATTGTCTTTTTGGATGAGTAGGAGGATCTAACCCCATTTTAATCAATCTCGACCCACTG
TTTTCAAATTTTG---TATTGCTTGTCCTAAAGAGGCCACGTGAT-----------------------------------
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---TCACAGTTTCTAGATTAAAAAGACTGTGCAGCTTTATTTAAGAAAGCTCTTGCATTTATATATTCTGCACAAATGTT
TGAACTTTCTCATTCTCATGAAAGACAAATAATGCTCCAAATATTTAGTTTCCTCTGATTTTCTCTAGTCATCAATTTAT
TTTGTGACCGGACCACAGAAATATATATGCACAGTTAGTGCAAACTGTGATTGATATG---TTTTTAACCTAAACTTCAG
GATATCGATAATATTGCGTTGATAATTTGTAAGCTTAATATTATCATAATTCTGTTTTGGTTCCACTTTCTAGCCTTGCT
TGCATCAATCTATGTATCCTGCCACTCGTTCTCTTCATCTCCTTTTAATTGAAATTTTGGGGTTAACAATTTTTATAATC
TACTGCATGTACAATTCCCATTGCTTCTCAATCAGCTTGTCTGGAGCCAATGATGATGACCGAGCCATTAGCCTCCTGCA
TGCCTGACAGGATGGTTTGTGAAAGGCAACATTTTCGCACCATGCTGCAGATATTCTCCCTGAAGCTAGCTTACACTTCT
TCACATGTTACTGGCCCGGTCCAGTTGTACGGATACGTGGCTGTCAGGGATCTTTTGAACCCTATGCGTAACTACATCTT
CAACCGCACAAGGGATGATCCTTTCGTCGTGGAGCATGACGGCCTTATCCGAATGTCCGGCCCTAAGAGGGGCATCAGAA
TGGGGGCTCCCGTGCTGATTGAGTTCGACATGAAGGTCAAGAGAGGAGTCGGAGAAGCAGAAGATGATTTACAGCTCGTC
GATTGCGTTGCCTGCCTCAACGACATAACCTCGAGACATGCTACGAAGAACAGAAGACGGATCGATGGCGATTGCGGGGC
GGTGGACATAGCCTATGCGCTTCTGAGGGGCGCCGCGGAGGCCACCGTGCAGGTTGGGATATCAGAGCTGGCACAGGACA
GTGGCTTGATAAGGCTGAACGCAGCATTGTTTTACACCAAGGAGTTGAGCGCGCAGATCCAGCTGTTTGACGGAGTTGTC
GCCGCCGAGGCGACTGAGCTTTGCAGGACTGTGCTTGCCGTGGCGAAGGGAGGTCAGTTGCTTGTATCGTTGATGCTCGA
TCAGACTGGTGGCTCGGGTGATTGCGCTTTCAGTCGTAGCTGCACCTTCCCTGTTCAAAAGCATGGAAACCATGTCTCCG
TTTTCAAGCTTGGGCTGGCGGCTGTCGAGGTGAAGGTAACCTGGTCGACTCTGGACATCCCCGGAAGCCTTTTGGGTCCA
AATTGCTTCCAGTGGGAGTTCATGGCAGCTGAGGACGTTGAGTATGAAGGTGACTGAATAGCACTTTCTCTTGATGGGGT
GTCCTCACTCC---------------------------------------------------------------------
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-------------TAACTACTTAAGTATTATAGTATGTTTGTTATCTGGATGTCTATGTCATTTCTGAATGCCTATGTGT
ATGTGAAATAGCCGCGCTTTGTGGTTTGCTGGTACCTCTGCTCAAGTTTGTTTGTGTTTGATTTTCTAATGCTC------
-------------------------------------------------AAGTATTGTCATTATACTGGGGACATGTTCA
GACTTGGTAGTAGCAAATATAATTCCCCTGTAAGTGCATCCATAAGACACATGACATCTGGATTATTATTTTTGTATGCG
TTTCGACACTCTGTCCTGATGCAATTCTTGCC-----------TTAATGTTGGCTTGCCACTAGCTGGGGCAGCCTGATT
TACCGTTGTGTGAGTTCTTGTGGGCATCACTGGACACTTTGACAGCCCTTCTCTTGCTGGTGCCTGGTGGGCAGAAACAA
CAAAAATCTGAGTAAATTGTACCGAACGACAACAATTGTGTCACTATTTTACAGAACCATGACTTGTGTGGATGCCAATT
TGCACAAAACAGCAACTTTTGTGCTGAAGTCAAGTCACTAACTGCACGGTTAATAGCGGAACTGACGAGGCTGAACCAAA
TATCAGTGCCAATCCATCTAGAACCTGGCATGTGGGCCAGCTTTGTCAAATTAGCTGCCTGGTTAATGAATTTGCCACAA
AAGTTGTAATAATTTTATTGAAGCTGACAGTACAAAATTTGTGGTAATGTGAAACTGGTGACTCAATTCTTACGGTTATG
TGCAATTCACTCTTTCTTGGGAACACCCGCGCCCGTTTCAAATCGGCGCAAGGAAAACGTTCT---TGCTTTTCGGCATG
AGTGGACGACATGGCACAAGTTGGTGACTGAGTCGGCAGTCACCATTTCAGCCACTCGTAGCTGCACGCCTCTGTTCCAT
GTACTCAGCCGTGCCCTCGATTGCGTTTGCATGAGCACCTTCTATACTTCGTTCGATTTGGCACAAATTCTTGCCTTCTT
GCTTCATT
>chr3A_3
--TGTTTTGACTCTGGGGAACATATGCTCCAGGATAAACAGTAAATTCTAAACAAATAGTAAATAAATTT-AAGAATTC-
---TTTTTTTGTAGATGTTCACGATAGTGTCACAAATGTGCTTGACAATTTTCATGCGAAACGGTGTAACATTTGTAGGC
AACATTTGAACGTTTGGTTTTTTTTGTCACAGATCAAAATGTTTAAGTTTTCGCCCTAAAAATTTAGAGATACCATTTGG
GTGTGACAATAAACACATGTATTTTGAAAAAAAAAATGTCAATTACAAAACATATTTTTGCCGAGCAGGAGCATTTGCTC
CCTAGACTCAAATTGGATTTCCGCATTCCATGATT-------GTTCATGAATTGGGCTTTTGTTTCCTGGGAGCTCCTAT
TACACGCTTTATGAGCAAATAAGCCCTATAATGCGACGTGGGCCAGCAACCCGTCTAACGCTTCATGCGCGTATGATTTT
CAGTGATTTTTTT--ATTTCAGTTAGTTTTTCATCCACCCTTTTTTT--GTTTCGGTTGGTATTTTCTTAGGAAATTTTT
AATATTATAGGATACATGAACCAAAAAATATTTGAGTATTTACATAATACAAAAACACAATTACGAATTTGTTTTAAGAA
ATATTCACATAAATTTAAACAGTGT-----------------------------AAAGAAATTATTTTAATGTTCATGAA
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----------------------TTTAAATAATGTCATTGATTCAAAAAATTGAA-AAAAAA---------ATAAAAGTAT
ACAATATTCGGAATTATTTTTAAAATAAT---------------ACATAATGTAAAAATTATAAGAAAGAAAACGAGAAA
ACAA---AAATAAAAAATAAAAAA--------------------------------------------------------
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>chr3B_3
--TGTTTTGGCTCTAGGGAGCATATGCTCCCGGATGAACAATAAATTCAAAATAAATAATAAATAAATTTTAAGAATTCT
ATTTTTTCTA-TAGATGTTCATGATAGTGTAACAAATGTGCTTGACAATTTTCATGCGAAGCAGTGTAACATTTGGAGGT
AACATTTGAACGTTTGATTTTG-TTTTCACAGATCAAAATGTTTAAGCTTTCGCCATAAAAATTTAGGGATAGCATTTGG
TTGTGAAAATAAACACATGTATATTTTTT----AAATGACAATTACAAAATACATTTTTGGCGAGTAGGAGCATTTGCTC
AATAGAGACAAATTGGATTTCGGCATTCCATGATACTTCAAAGTTCATGAATTGGGCTTTTGTTTCCAGGGTGCTCCTAT
TCCACGCTTTACGAGCGAATAATCCCTATAATGAGTTGTGGGCCAGCAGCCCATCTAGTGCTTCGTGTGCGTATGGTTTT
CAGTGAA--TTTT--ATTTCAGTTGGTTTTTCATCTACCTTTTT-TT--GTTTTGGTTGGTATTTTCTTAAGAAATTTTT
AATATTAAAAGATACATGAATCAAAAAATATTTGTGGATATAAATACTAC-AAAACACGATTACAAATTTGTTTTAAGAA
ATATTCACATAAATTTTAAAGAGCA-----------------------------TAAAAACTAATTTAAATGTTCATGAA
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----------------------TTTGAATAATGTTATTGATTAAAAAATTGAAATAAAA-TCATAAATTCGTAAAAGTGT
GAAATATTCGGAATTATTTTATAAGTAATTATTCTAAAAATTGTACAT-ATGTAAAAATGAAAAGGAATAAAATGAGAAA
AAAATGTAACAGAAAAAGAAAAAAAACTAG--------------------------------------------------
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>chr3D_29
---------------------------TCCTGGATAAACAGTAAATTCAAAACAAATAGTAAATAAATTTTAAGAATTCT
ATTTTTTTTTGTAGATGTTCATGATAGTGTAACAAATGTGCTTGACAATTTTCATGCGAAAAGGTGTAACATTTGGAGGC
AACAGTTGAACGTTTGATTTTTTTTTTCACAGATCGAAATGTTTAAGCTTTCGCCCTAAATATTTAGGGATAGCATTTGG
GTGTGACAATAAACACATGTATTTTT---AAGAAAATGACAATTACAAAATATATTTTTGGTGAGCAGGAGCATTTGCTC
CCTAGAGCCAAATTGGATTTCCGCATTCCATGATTGTTCAAAGTTCATGAACTGGGCTTTTGTTTCCTGGGAACTCCTAT
TCCATTCTTTATGAGCGAATAACCCCTACAATGCGTTGTGGGCCAGCAGTCCATCTAGCGCTTCATGCGCGTATGGTTTT
CAGTGAT--TTTTTCATTTCAGTTGGTTTTTCATCCACCTTTTT-TT--GGTTTCGGTTGGTATTTGTTAGGAAATTTTT
AATATTATAAGATACATGAACCA-AAAATATTTGAGGATTTAAATAA--------------TACGAATCTCTTTTAAGAA
ATATTCACATAAATTTTAAACAGTGTTTTTAGCGGGGTAAATTTTAAACAGTGTTAAATACTTATTTAAATGTTCATGAA
TTTATGATGTCATTGATTACGGCTCATGCGCATGCGCTGTTGTTCCCTTGGTTCGGCTGGCTCATGTCGCTCGTCATGTG
GGAGACAAGGTGCACGATTTGGAGCAAGCCCTGGCCCGCATCGGCTCATAAATGGGCCTGGTGGGTCACCGCTCGTGAGC
AGTAGCAGCCGTGAGTTTGGGAGAAGTTAGTTAGTTTTTCGAAAGAAATTACTTTTCATATTTTCAAAATATAAAATTAC
TTAGAATAAATAATACCTCAATTTCGAGAAATTTTTAACACATTTTCATAAAAATCTTCAATTTTTTTGAAAAAATCATT
AATCATGCATTTAAAATTGTGCAAAGAGTATAGAAAAATGTTTGTGATGTATACAGAAAATGTACAATGTATATTAAGAA
AAGTAGACACCAAAAAACATATTTTGAATAATGTCATTGATTAAAAAAATTGAA-AAAC-TCAAAAATTCATAAAAGTGT
ACAATATTCGGAATTATTTTAAAAACATTTATTTTAGAAATTATACACAATGTAAAAATGAAAACAAAGAAAATGTGAAA
ACAA---AAAAGAAAAAGGACAAACATTAGCCGATATGCGAAAGAGCACAAAAGAGAGCGATCTCTAGGGTTTTGTACGT
GGAGGAAAAAACAAATCAGACACGCACCCAAACCCTAACCAAACAAATCCAAACCA-GGGGGAAAAAGTGATGGGGAGCC
GCGGCGTACAAGCGGCGTCGTCGATCGGTGCCTGCGGAGTTAAAACGTACTACTAGAATGACTGGGGGCGAGGACAATCC
GATCGAAG----AAAAGAAAAGAGGCTGGGATGGACAGCGGCAGCGCGCGGGCCGTCCCGTCGTCGAAGTCCTCCCAGAG
CAGAGTAACCTTCGGCGACGAAGATTCAACCGAAGAGAAGAGAAGAAAGATGGAGAGCGGCAGCGCGCGAGCCGTCGCGT
CGGCGGGGGCTCCGCAGAGGAGAGTGCCATTGGGTGAGGACGGCCGTCCGCTCGACGGCGTGATGCGTGCCAGCCTCATT
CGCCACTTGAAGCATGGTGACGGCTCTATCTTCAGAAGCAACGGTTATTGGACGAAAGTCTATCGCCTCCAAGATACCAG
CGAGAGTACGTACGTAATTTTTTCATCTTATATGATTGCTGAATGGCTCCTATATGTGGTTTTTGGTTTTGCCAAATCAT
TTATTTTTTCCGATGTAGGAGGTTGGCTCCCAGTTTCCTTAAACTTTCTGTATGTACTAGGAGACCACTAAGGTTTCACT
TCATGACTGCGACCTTTAGAAGTAAACATTACAAACGATTTAGTTTACACCTTACAACCAGCAACAACTCAAATAATATT
TGTTTCAGTAAAAACCAGAGACATCAACCTCTGCATTTTTCAAGATTTTGACAAAATCCTAAAAGCACCTCTTTTATAGT
ACTGTGGCCAAAATCCTAAAAGCACCTCTTTTATACTGTGGCCAAAATCCTAAAAGCTCCTCTTTTATACATACTATATA
CTCTCCTCGTTCCAAAATATAAGATGTGTTTAAAAAGTTA----------------------------------------
----------------------------------------------------------------AATGATACTATTTTAG
TGTTACAGTTATTGATATTTTACTCTCTATATACTTGGTCACTTGGTTAAACACAGATAAGGTTGACTTCTCTGAAAATT
AATGAACGGATGGTATT-AAAGTAGAGGTGCTATATGATCTAAAAAGATGGCTAAGAGCATCTACATGCACTGTTTCTGT
TGATTAAAAAACCCACGG-CACCTATTGATCGAAGTAGGGATGCTATATGATTTCAAGAAATGGCGCTACTGAGCATTTG
TAATCACTTGTTTCTGTTATTTATAGACCATTTAAACGCATGGGTCCTCATGATTGCACTGTATTTCTTTTTTTATTTAA
CTTGCCTAATATTAAATCAAGATTGTCTTTTTGGATGAGTGTGAGGATCCAACCCCATTTAAATCAATCTCGACCCACTG
TTTTCAAATTTTG---TACTGTTTACCCTAAAGAGACCACGTTATAGTCACAGTTTCTAGATTAAAAAGA----------
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-------------------------ACTGTGCAGCTATATTTGAGAAAGCTCTTGCATTTATATATTCTGCACAAATGTT
CGAACTTTCTCATTCTCATGAAGGACA---AATGCTCCAAATATTTAGTTTCCTCTGATTTTCTCTAGTCGTCAATTTAT
TTTGTGACTGAACTTCAGAAATATATATGCACAGTTAGTGCAAACTGTGCTTGATATATGTTTTTTACCT--AACTTCAG
GATATCGATAATATTGCGTTGATAATTTGTAAGCTTAGTATTATCATATTTCTGTTTTGATTCCACTTTCTAGCCTTGCT
TGCATCAATCTATGTATCCTGCCACTAGTTCTCTTCATCTCCTTTTAATTGAAATTTTGGGGTTAACAATTTTTATAATC
TACTGCATGTACGATTCCCATTGCTTCTCAATCAGCTTGTCTGGAGCCAATGATGATGACCGAGCCGTTAGCCTCTTGCA
TGCCTGACGGGATGGTTTGTGAAAGGCAACATTTTCGCACCATGCTGCAGATATTCTCCCTGAAGCTAGCTTACACTTCT
TCACATGTTACTGGCCCAGTCCAGTTGTACGGATACGTGGCTGTCAGGGATCTTTTGAACCCTATGCATAACTACATCTT
CAACCGCACAAGGGATGGTCCTTTCGTCGTGGAGCATGACGGCCTTATGCAAATGACCGGCCCTAAGAGGGGCATCAGAA
TGGGGGCTCCCGTGCTGATTGAGTTCGACATGAAGGTCAGGAGAGGATTCGGAGAAGCAGAAGATGATTTACAGCTCATC
GATTGTGTTGCATGCTTCAACGACATAACCTCGAGACATGCCACGAAGAACAAAAGACGGATCGATGGCGATTGCGGGGC
GGTGGACATAACCTATGCACTTATGAGGGGCGCCGCGGAGGCCACCGTGCAGGTTGGGATATCAGAGCTGGCACAGGACG
GTGGCTTGATAAGGCTGAACGCAGCATTGTTTTACACCAAGGAGTTGAGCGCGCAGATCCAGCTGTTTGACGGAGTTGTC
GCCGCCGAGGCGTCTGAGCTGAGCAGGACTGTGCTTGCCGTGGCGAAGGGAGGTCAGTTGCTCGTATCGTTGATGCTCGA
TCAGACTGGTGGCTCGGGTGATTGCGCTTTCAGTCGTAGCTGCACCTTCCCTGTTCAAAAGCATGGAAACCATGTCTCCG
TTTTCAAGCTTGGGCTGGTCACTATCGAGGTGAAGGTAACCTGGTCGACTTTGGACATCCCCATAAGCCTTTTGGGTCCA
AATTGCTTCCCGTGGGAGTTCATGGCAGCTGAGGACGTTGAGTATGAAGGTGACTGAATAGCACTTTCTCTTGGTGGGGT
GTCCTCGCTCC---------------------------------------------------------------------
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-------------TAACTAATTAAGTATTATAGGATGTTTGTTATCTGGATGTCGATGTCATTTCTGAATGCCTATGTGT
ATGTGAAATAGCCGCGTTTTGTAGGTTGCTGGTACCTCTGTTCAAGTTTGTTTGTGTTTGATTTTCCGATGCGCATGTTT
GGATGCCCCCTGTGGTTTCTTTAGACTGATTCTCATCACAAG------AAAGTATTGTCATAATACTTGGGACT--TTCA
GACTGGGTAGTAGCAAATATAATTCCCCTGTAAGCGCATTCATAAGACACATGACATCTGGATTATTATTTTT-TATGCA
TTTCGACACTCTGTCCTGATGCAATTCTTTGCCTTCACACTTGTTAATGTTGGCTTGCCACTAGCTGTGGCAGCCAGATT
TACGGTTGTGCGAGTTCTTGTGGGCATCACTGGACACTTTGACAGCCCTTCTCTTGCTGGTGCCTGGTGGTCAGGAACAA
CAAAAATCTGAGTAAATTGTACAGAACGACAACCATTGTGCCACTATTTTACAGAACCATGACTTGTGTGGATGCTAATT
TGCACAAAACAGCGACTTTTGTGCTGAAGTCAAGTCACTAATTG------------------------------------
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>chr3B_823
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------------AAATCAAACACGCACCCAAACCCTAACCAAACAAAT-----------------------TGGGGAGCT
GCGGCGTACAAGCGGCGTCGTCGATGGGTGTCTGCGGAGTAAAAACGTACT---AGAATGACTTGGGGCGACGACAATCC
GATCGAAG----AAAAGAGAAGAGGCCGGGATGGAGAGCGGCAGCGCGCGGGCCATCCCGTCGTCGAAGTCCTCCCAGAG
CAGAGTAACCTTCGGCGACGAAGATTCAATCGAAGAGAAGAGAGGAAAGATCGAGAGCGGCAGCGCGCGAGCCGTCGCGT
CGGCGGGGGCTCCGCAGAGCAGAGTGCCCTTGGGTGCGGACGGCCGTCCGCTCGACGGCGTGATGCGTGCCAGCCTCATT
CGCCACTTGAAGCATGCTGACGGCTCCATCTTCAGAAGCAACGGTTATTGGACGAAAGTTTATCGTCTCCAAGATGCCAG
CGAGAGTACGTAA-----TTTTTTCATCT-CATAATTGCTGAATGGCTCCTATGTGTGA-TTTTGGTTTTGCCAAATCCT
CTCTTTTCAG---TGTAGGAGGTTGGCTCCCAGTTCCCTTACTTAT------TGTACTACGAGACCACTAAAGTTTCACT
TCATGACTGCGACCTCTAGAAGTAAACATTACAAACGATTTAGTTTACACCTTACAACCAGCAACAATTCAAATA---TC
TATTTCAGTAAAAACCAAAGACACCAACCTCTGCATTTTGCAAGATTTTGACAAAATCCTAAAAGCACCTCTTTT---GT
ACTGTGGCCAAAATCCTAAAAGCACCTCTTTTATACTGTGGCCAAAATCCTAAAAGCTCCTCTTTTATACATACTATATA
CTCCCTTCGTTCCAAAATATAAGATGTGTTTAAAAA-TTAAATGTTTATATGTATGTTTGATCACGTTTATAGAAAATTA
TATCCACAGCTATGATATA-----TCAAATAACAGAATGTGAAAATATATGTCATGGTAAATCTAATGATACTATTTTAG
TGTTACAGTTATTGATATTTTACTCTCTATAAACTTGGTCACTTGGTCAAACACAGATAAGTTTGACTTCTCTGAAAATT
AATTAATGGGTGGTATT-AAAGTAGAGGTGCTATATGATCAAAAAAGATGGCTAAGAGCATCT--ATGCACTGTTTCTGT
TGATTAAAAAACCCACGG-CACCTATTGATCGAAGTAGGGATGCTATATGATTTGAAG-AATGGCGCTACTGAGCATTTG
TAAGCACTTGTTTCTGTTTATTATAGAACATTTAAACGCATTGACCCTCATGATTGCATTGTATTTCTCTTTTTATTTAA
TTTGCCTATTATTAAATCAAGATTATCTTTTTGGATGAGTAGGA-GATCCAACCCCATTTTAATCAATCTCGACCCAGTG
TTTTCAACTTTTGTACTATTGCTTATCCTAAAGAGACCACGTGATAGTCACAGTTTCTAGATTACCGAAAAAGACTTTCG
CCCCGCTTTATATATAAAGCCAACCGCCCAAGCCACAGACAAGATACAGGAGTTCAACCACAAGCACGCGCCAGGCGTGA
TAGTCATAGTTTCTAGATTAAAAAGACTGTGCAGCTATTTTTGAGAAAGCTCTTGCATTTATATATTCTGCACAAATGTT
TGAATTTTCTCATTCTCATGAAAGACA---AATGCTCCAAATACTTAGTTTACTCTGATTTTCTCTAGTCGTCAATTTAT
TTTGTGACTGAACTTCAGAAATATATATGCAAAGTTAGTGCAAACTGTGCTTGATATATGTTTTTTTACCTAAACTTCAG
GATATCGATAATATTGCGTTGATAATTTGTAAGCTTAATATTATCATATTTCTGTTTTGATTCCACTTTCTAGCCTTGCT
TGCACCAATCTATGTATCCTGCCACTCGTTCTCTTCGTCTCCTTTTAATTGAAATTATGTGGTTAACAATTTTTATAATC
TACTGCATATACAATTCCCATTGCTTCTCAATCAGCTTGTCTGGAGCCAATGATGATGACCGAGCCATTAGCCTCCTGCA
TGCCTGACGGGATGGTTTGTGGAAGGCAACATTTTCGCACCATGCTGCAGATATTCTCCCTGAAGCTAGCTTACACTTCT
TCACATGTTACTGGCCCAGTCCAGTTGTATGGATACGTGGCTGTCAGGGATCTTTTGAACCCTATGCGTAACTACATCTT
CAACCGCACAAGGGATGATCCTTTCGTCGTGGAGCATGACGGCCTTATACAAATGACTGGCCCTAAGAGGGGCATCAGAA
TGGGGGCTCCCGTGCTGATTGAGTTTGACATGAAGGTCAAGAGAGGTGTCGGAGAAGCAGAAGATGATTTACAGCTCGTC
GATTGCGTTGCCTGCCTCAACGACATAACCTCGAGACATGCTACAAAGAACAGAAGACGGATCGACGGCGATTGCGGGGC
GGTGGACATAACCTATTCACTTCTGAGGGGCGCCGCGGAGGCCACCGTGCAGGTTGGGATATCAGAGCTGGCACAGGGCA
GTGGCTTGATAAGGCTGAACGCAGCATTGTTTTACACCAAGGAGTTGAGCGCGCAGATCCAGCTGTTTGACGGAGTTGTC
GCCGCCGAGGCGTCTGAGCTGAGCAGGACTGTGGTTGCCGTGGCGAAGGGAGGTCAGTTGCTTGTATCGTTGATGCTCAA
TCAGACTGGTGGCTCGGGTGATTGCGCTTTCAGTCGTAGCTGCACCTTCCCTGTTCAAAAGCATGGAAACCATGTCTCCG
TTTTCAAGCTTGGGCTGGCCACTATCGAGGTGAAGGTAACCTGGTCAACTTTGGACATCCCCGGAAGCCTTTTGGGTCCA
AATTGCTTCCAGTGGGAGTTCATGGCAGCTGAGGACGTTGAGTATGAAGGTGACTGAATAGCACTTCCTCTTGGTGGGGT
GTCCTCACTCCTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAAAGATTTGAACAAGTGACTACATACGGGACAAAATG
AGTGAATCTACACTCTAAAATAAGTCTACATACATCCGTATGTTGTGTCCATTTAAAATGCCTAGAAAGACAAATATTTC
GAAACGGAGGGAGTAACTAACTAAGTATTATAGGATGTTTGTTATCTGGATGTCTATGTCATTTCTGAATGCCTATGTGT
ATGTGACATAGCCGAACTTTGTGGTTTGCTATATCTGTACT--AAGTTTGTTTGTGTTTGATTTTCTGATATGCATGTTT
GGATGCCCCTTGTGGTTTCTTTAGACCGATTCTCGTCGCAAGAAACTGAAAGTATTGTCATTATATCGGGGGACAATGTT
CAGAATTACTCCCTCCGTCCCAAAATATAAGAACTTATTTTACACTACTATATTGTAAAAAATGTCCTTATATTTTGGGA
CAGAGGGAGTAG----------------------------TTGTTAATGTTGGGTGGGTCAT---------------ATT
TACCGTTGCGCGAGTTCTTGTGGGCATCACTGGACACTTTGACAG-CCTTCTCTTGCTGGTGCCTGGTGGGCAGGAACAA
CAAAATATTGAGTAAATTATACAGAACGACAACAATTGTGCCACTATTTTACAGAACCATGACTTGTGTGT----CAACT
TGCACAAAACAGCAACTTTTGTGCTCAAGTCG-----CTAACAGCGCGGTTAATAGCGGAATTGACGAGGTTGACCCACA
TATCAGTGCCAATCCATCTAGACCCTGGCATGTCGGCCAGCCTTGTCAAATTAGCTGCCTGGTTAATGAATTTGCCACAA
AAGTTGTAATAATTTTATTGAAGCTGACAGTACAAAAGTTGTGGTAATGTGAAACTGGTGACTCAATTCTTACGGTTATG
TGCAATTCACTCTTTCTTGGGAACACCCGCGCCCGTTTCAAATCGGCGCAAGGAAAACGTTCTTCTTGCTTTTCGGCGTC
AGTGGACGACATGGCACAAGTTGGTGACTGAGTCGGCAGTCAGCATTTCAGCCACTCGTAGCTGCATGCTTCTGTTCGAT
GTACTCAGTGGTGCACTCGTTTGCTTTCGCGCGAG---------TACTTCATTCGATTTGGTACAAATTCTTGGCTTCTT
GCTTCATT
>chr3D_2536
ATTGTTG-------------------------------------------------------------------------
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---------------------------TCGATCAGCTTGTCTGGAGCCAATGATGATGAATGTGCCTTATGACAGTTGCA
TGCCTAACTAGAGGGTCTGTGGAAGGCATGCATATTGCGCCATGATGCAGGTATTCTCACTGAAGCTAGCTAACACG---
TCATATGTTGGTGAACCAATTGAGTTGTATGGCTACGTGGCTGTCAGAGATCTGTTGAACCCTATGCGCAACTATGTCTT
CAACCGTACAAGAGATGATCCTTTCATTGTGGGGCATGATGGCCTCATACAAATGTCTGGCCCTAAGAGAGGCATCAGAA
TGCAAGCTACTGTGGTAATCGAGTTTTACCTGAAGATTAAGACGGGA---GGAGAAGAAGGTGGTGATCTAGAGCTCATT
GATGGTGTTGCCCAATTCAGCGACAGATGCAATAGCCATGCTAGCGTAATCACACGCCGATTGGATGGTGATTGTGGCTC
AGTGGACATAACGTTTGCACTTCTAGAACAAGCCTCGGAGGCCAATGTACATGTTGGGATATCAGA--------------
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>chr3B_2536
ATTGTTG-------------------------------------------------------------------------
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---------------------------TCGATCAGCTTGTCTGGAGCCAATGATGATGACTGTGCCTTATGACAGTTGCA
TGCCTAACTGGAGGGTCTGTGGAAGGCATTCATATTGCGCCATGATGCAGATATTCTCGCTGAAGCTAGCTAACACA---
TCGTATGTTGGTGACCCAGTTGAGTTGTATGGCTACGTGGCTGTCAGAGATCTGTTGAACCCTATGCGCAACTATGTCTT
CAACCGTACAAGAGATGATCCTTTCATTGTGGGGCATGATGGCCTCATACAGATGTCTGGTCCTAAGAGAGGCATCAGAA
TGGAAGCTACTGTGCTAATCGAGTTTGACCTGAAGATTAAGACAGGA---GGAGAAGAATGTGGTGATCTAGAGCTCATT
GATGGTGTTGCCCAATTCAGCGACAGAGGCACAGGCCACGCTAGGGTAATCACACGACGATTGGATGGTGATTGTGGCTC
AGTGGACATAACGTTTGCACTTCTGGAACAAGCCTCGGAGGCCACTATACAGGTTGGGATATCAGAAATTCAGC------
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--------------------------------------------------AGGACAGTTGCTT-----------------
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--------
>SNPs
S---------------------------S---------S------S----------------------------------
--------S-----------------------------------------------------------------------
------S---S------SSSSSSS--------S----S-S----------------------------------------
SS---------------------S--------S-----------------------------------------------
--------------------S-----------S-----------------------------------------------
------------------------------S----S-----S------------------S-SS---S------------
----------------S------------------------------SS----------SS-------------------
--------------------------SS-S--------------------------------------------------
------------------------------------------------------------------------S-------
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-------------------------------------S---------------------S-------------------S
--------------S-------------------S---------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-S---------S-------------
--------------S----------------------------------S------------S-----------------
--------SSSS-----------------------------S------------------S--------------S----
S-------------------------------------------------------------------------------
---------------S--------------S------------S--S---------S----------S------------
-----------------S-----------------------------------S--------------------------
--------------------------------------------------S-----------------------------
-------------------------------S--------S---------------------------------------
--------------------------------------------------------------------------------
------------------------SS------------------------S-----------------------------
----------------------------------S---------------------------------------------
-----------------------------S---------------------S------------S---------------
-------------------SSSSS---------S-------------------------------S--------------
----------S---------------------------------------S-----------------------------
--S--------------S------------------------------------------------S-------------
------S---------S-S-------S-----------------------------------------------------
-------------------------------------------------------------------------------S
-------------------------------------------------S------------------------------
------------------------S----------S--------------------------------------------
--------------------------------------------------------------------------------
------S-----------------------------S-----S-------------------------------------
---------------------------SSS----------------------------------------S---------
--------S-S--SS----------------------------------S-------S----------------------
------------------------------------------------S----------S--------------------
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--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-----------------S--------------------------------------------------------------
------------------------------------------------S-S-----------------------------
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----------S-------S-------------------------------------------------------------
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------------S-------SS----------------------------------------------------------
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-------------------SS--S--------------------------S-----------------------------
-------------------------------------------------------------------------S------
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-------------------S-------------S----------------------------------------------
----------------------------------------S--------------------------S----S-------
-------------------------------------------------------------------------SSS----
----S----------------------------------S---------------------------------S-----S
-----------------------------SS------------------------------------S-------S----
----------S---------------------------------------------------------------S-----
----------------------S-----------------S---------------------------------------
---------------------------------------------S---------------S--------S---S---S-
----------------------S----------S-------S--------------------------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------------------------------S-S
------------------------------------------S-----------------------S--S-------S--
--------SS----S----S----S--S--SS---SSSSSSSSS------S----------S-----------S------
--------
>forward_468
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------------------------------------------------GCCCATCTAGCGTTCAGTGA------------
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>reverse_2577
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----------------AGCCACCTATCGATCGAAGT--------------------------------------------
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>forward_1961
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----------------------TTGGCTCCCGGTTTCCTTG---------------------------------------
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>reverse_3651
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--------------------------------------------------GAATGTCCGGCCCTAAGAGG----------
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>forward_3649
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-----------------------------TGGAGCATGACGGCCTTATC-------------------------------
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>reverse_5358
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-----------------------------------------------------------------------------ATG
AGTGGACGACATGGCAC---------------------------------------------------------------
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--------
