>input_sequence_32444
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-----------------------------ATGGCGCCGGGAGCCGGGACGGCGGCGGCG---GCCAAGAACCCTACCAAA
ACCCTCGCCGCCACCCTCCTCCTCGTCCTCCTGCTCGCCGACCTCCCGCTCTGCGCCTCCCAGCCGCCGCTGCACTCCCA
GCCCCTGCCCGCCACGCAGTCCCCGGCCGCGCCCCTGCCGCCGCCGCAGCCCAGGGCCCCCCACGCGCGGGCCGGCGGCG
CCGCCCGCCTCCGCCGCATCGCGCTCGGGGTCCTCCTCGGCTCGCTCGCCGGCTTCCTCCTCTCCCTCGCCTTCCTCTAC
GCCATCCGCGTCGCCGTGCTCCATGCCGGGAACGCGCCGGCCGTCGCCCGGGGCCCCGTCTCCTTCACGCCGCAAATCTC
GCCCAAGAGCCTCCAGTGCGCGCTCCCCTCCGCGCGCCCGCTCGCGCGCGGGCCCCGCGGGACGTACCACAAGCTCGACC
TCGACGGCGACGTCACCGTCGCCGTCAAGGTGCTCGACCTTGCCGCCGCCAGCCGCGCCTCGCCCTCGCCCTCGCCCTCG
CCCTCGCGGCCGGCGAGCGGCTCCAAGTC------CGACATGCGGAGGGTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGT
GCGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGACCGGCTCTCGCTCGTCTACGACTTCGTCCCGG
GGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTGAGCCTCAGCTGGGACACCAGGAACAGGATTGCG
GCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCCAGGATACTGCATTGCAACCTCAAGCCGTCGAA
TGTGATGCTGGAGGAAGGCTTCGAACCGGTGCTGGCGGATTGCGGGGTTGCGAGGCTGCTCGATTCGGGTTCGCCTGATC
CGGAGTCGTCCGGTAGCCTCTACACTGCTCCAGAGTGCTACCAAAGTAGCAGGTAAATC---------TATGTGTTGTCT
GTTTTCAGTGCTCAATTCAGCTAAATTTAGTAGCTTGAAGATTGCAGTATTACTA----TTTCTCAAATTGACAATTTGG
TTTGCTTGTCTGTTCATTATAAATTAT-AATGAGGGGAAATTGAACCCAGGCTATGCATCATTATCACTGCCAGGAAAGT
AGATCTATAT----------------------------------------------------------------------
-------------------GCATACT-CAATTTTATATAGATACGAAGCAAACAACTCAATGTATTTCAGATTGCTAGAA
ATCTGAGATGTGCGATGTCTGCTATTGGCACTGAATAGCTTAAATTTTAAGCTATAAATCATTATACTATTGGTAACCCA
TACTTATACATCTGGCAACTAACATGTGTA--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AATT
GTGTAGTGATAATATCATGTCATTTTCTTATTTGAACCATAAGCA-------TTGCAACATTATA----------TACTA
CCAAAACAAGCGTTTGACATTCCATTTCATTATTGCTTGCGTCCATAGGTTCTTTCGATTTGTGTCCCCGGTTAACAGTG
CCTAATCATTAGCTAGCAAGCACTGTTGTGTGTTTCCTTTCATTAGACTCTTCTGAATTTGGTTTTCTAGTTAT-TGACT
GTGTTGACGATAAGTAGACTTCAGTTCCGCGCCATTTGAATTTAATCAGTGAAATGAGTAAGAGAGAAGACATAAAGCAT
ATTAATAAAGAATACCAGAGGGCTTAATCGAAGGTACCCAGCTTTTGCTTTTTGTAACTGGAGAATCTTTACTTTGTTAG
GGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTACGCTTTCCATATATTCCCGCATGAGCACACACAGCTGTT
GGCCCACCCCCTGTTCTACT-AAAAATATTGATATATTTCATTCTAGCCTCTTGTATATCAATCAGAGAATAGATGCTTT
CAGGATTGGTGTTCTATATTCTTATTCCAATCTTCTTCAGATAAGTACATCATCAGTTAACTTATGGG------------
----AA----------------GGACTTTCAACCAGACTACTTTAACCAGATCAGTAACTCATG----ATTTATTTATTT
TGTCATGGTTGATCATCAATTTTACAAC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTTAGAGGTCAATCCTAATAGAGCTTGTGTTTTT
CTTCTGTTAGATGGTTCAGAACTTCA---------GCTGCCATCCATATGTTTTTCAGCTCTTA---GGTGTTTCTGAGC
ATTTAGATTCAAACATTTGCTTGTGCAGGTACACAGATAAGTGCGACGTCTATGCTTTCGGCATGATCCTCGGCGTTCTG
CTCACCGGGAAAGACCCCGCAGACCTGTTTTTCTCAGGAGAAAGTGGACGGGGCAGCCTGGCACGATGGCTCCGTCACAT
GCAGCATTCCGGCGACATGAAAGAAGCGCTGGACAGCAGCATTGTAGGGGAGGAGGTCGACGAGGAGGAGATGGTGATGG
CCGTCAGGGTCGCCATCGTGTGCCTCTCGGAGCTGCCAGCCGATCGGCCATCCAGCGACGAACTCGTAGCCATGCTCGCC
CAGCTCCACAGCTTCTAA--------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G434500
GGTTCCCCCTTCCCCTCGCCTCGTCTCTCGCCCCTATGCTATGTGCTGCCGCTAGAGCCACCCCGAGGAACGAGACCGTG
GTATGGTAAACGTAAACCCAACCGGGGTGGTGTGGGGGGTGAAAACGGACGGGGGAGGGAATCCAGGCGGACGGACGGAC
GG----GGGAGGAGAATGTCTGGTTCCGGTCTTCATGCTCTGTCCCGTGGCTGCGTGCGTACGT----------------
----GCTGAGCTGCGAGATGCGCCGGCAACCCAAAAAGCCTCG------CTCGCCCTTTTGATTCCCCCACGCCAATGCC
TTTGCTGCTCCCTGCTCTGCTCCCCTCCGCTCACCGTGAGAGCCTGGGATAGCT--TCTCTTCTCGCCCCGCCGTTCCGT
TTCGACTTAAAGCTCCTCCCGTGGAAGCTCGCC-CG----CTCGTCTTGGTAGGAGGCGCGGGCCGCGTGACGGTGAG--
----------CTATCGCACGCACGCCTGCTCTGCTCCGCTGCTGCTGC-GGAGGAGGAGCAGGGCGACGTTTTCGCCGTT
TCCGTCTTCT---------TCCTCAGGTATAATTTTGGCACCCTGCAGAGCTCCT-------------------------
-----------------------------------TCCGTTTCTCTGTCCTCTTTCGGCTGTAATCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCATAAGCAAGAACCATGCAGAAAATGGCATCTTGATAGACCACT
CTTTGATCCTATTACTCGAGCATTTCCCGTTGAGCGATTTC--------------------------TTCTCTCCTCCCC
GCTGCCAAATCGGTTCTTTGG----TCCAATGGCGCCGGGAGCCGGGACGGCGGCGGCG---GCCAAGAACCCTACCAAA
ACCCTCGCCGCCACCCTCCTCCTCGTCCTCCTGCTCGCCGACCTCCCGCTCTGCGCCTCCCAGCCGCCGCTGCACTCCCA
GCCCCTGCCCGCCACGCAGTCCCCGGCCGCGCCCCTGCCGCCGCCGCAGCCCAGGGCCCCCCACGCGCGGGCCGGCGGCG
CCGCCCGCCTCCGCCGCATCGCGCTCGGGGTCCTCCTCGGCTCGCTCGCCGGCTTCCTCCTCTCCCTCGCCTTCCTCTAC
GCCATCCGCGTCGCCGTGCTCCATGCCGGGAACGCGCCGGCCGTCGCCCGGGGCCCCGTCTCCTTCACGCCGCAAATCTC
GCCCAAGAGCCTCCAGTGCGCGCTCCCCTCCGCGCGCCCGCTCGCGCGCGGGCCCCGCGGGACGTACCACAAGCTCGACC
TCGACGGCGACGTCACCGTCGCCGTCAAGGTGCTCGACCTTGCCGCCGCCAGCCGCGCCTCGCCCTCGCCCTCGCCCTCG
CCCTCGCGGCCGGCGAGCGGCTCCAAGTC------CGACATGCGGAGGGTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGT
GCGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGACCGGCTCTCGCTCGTCTACGACTTCGTCCCGG
GGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTGAGCCTCAGCTGGGACACCAGGAACAGGATTGCG
GCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCCAGGATACTGCATTGCAACCTCAAGCCGTCGAA
TGTGATGCTGGAGGAAGGCTTCGAACCGGTGCTGGCGGATTGCGGGGTTGCGAGGCTGCTCGATTCGGGTTCGCCTGATC
CGGAGTCGTCCGGTAGCCTCTACACTGCTCCAGAGTGCTACCAAAGTAGCAGGTAAATC---------TATGTGTTGTCT
GTTTTCAGTGCTCAATTCAGCTAAATTTAGTAGCTTGAAGATTGCAGTATTACTA----TTTCTCAAATTGACAATTTGG
TTTGCTTGTCTGTTCATTATAAATTAT-AATGAGGGGAAATTGAACCCAGGCTATGCATCATTATCACTGCCAGGAAAGT
AGATCTATAT----------------------------------------------------------------------
-------------------GCATACT-CAATTTTATATAGATACGAAGCAAACAACTCAATGTATTTCAGATTGCTAGAA
ATCTGAGATGTGCGATGTCTGCTATTGGCACTGAATAGCTTAAATTTTAAGCTATAAATCATTATACTATTGGTAACCCA
TACTTATACATCTGGCAACTAACATGTGTA--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AATT
GTGTAGTGATAATATCATGTCATTTTCTTATTTGAACCATAAGCA-------TTGCAACATTATA----------TACTA
CCAAAACAAGCGTTTGACATTCCATTTCATTATTGCTTGCGTCCATAGGTTCTTTCGATTTGTGTCCCCGGTTAACAGTG
CCTAATCATTAGCTAGCAAGCACTGTTGTGTGTTTCCTTTCATTAGACTCTTCTGAATTTGGTTTTCTAGTTAT-TGACT
GTGTTGACGATAAGTAGACTTCAGTTCCGCGCCATTTGAATTTAATCAGTGAAATGAGTAAGAGAGAAGACATAAAGCAT
ATTAATAAAGAATACCAGAGGGCTTAATCGAAGGTACCCAGCTTTTGCTTTTTGTAACTGGAGAATCTTTACTTTGTTAG
GGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTACGCTTTCCATATATTCCCGCATGAGCACACACAGCTGTT
GGCCCACCCCCTGTTCTACT-AAAAATATTGATATATTTCATTCTAGCCTCTTGTATATCAATCAGAGAATAGATGCTTT
CAGGATTGGTGTTCTATATTCTTATTCCAATCTTCTTCAGATAAGTACATCATCAGTTAACTTATGGG------------
----AA----------------GGACTTTCAACCAGACTACTTTAACCAGATCAGTAACTCATG----ATTTATTTATTT
TGTCATGGTTGATCATCAATTTTACAAC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTTAGAGGTCAATCCTAATAGAGCTTGTGTTTTT
CTTCTGTTAGATGGTTCAGAACTTCA---------GCTGCCATCCATATGTTTTTCAGCTCTTA---GGTGTTTCTGAGC
ATTTAGATTCAAACATTTGCTTGTGCAGGTACACAGATAAGTGCGACGTCTATGCTTTCGGCATGATCCTCGGCGTTCTG
CTCACCGGGAAAGACCCCGCAGACCTGTTTTTCTCAGGAGAAAGTGGACGGGGCAGCCTGGCACGATGGCTCCGTCACAT
GCAGCATTCCGGCGACATGAAAGAAGCGCTGGACAGCAGCATTGTAGGGGAGGAGGTCGACGAGGAGGAGATGGTGATGG
CCGTCAGGGTCGCCATCGTGTGCCTCTCGGAGCTGCCAGCCGATCGGCCATCCAGCGACGAACTCGTAGCCATGCTCGCC
CAGCTCCACAGCTTCTAACTGC------CATCGTCGTTGCTGGAAATTTCTGAACTTCAGAACACCCGTATGATATTCCA
TCTCGCGAGTCGCGAGACGACGCAGAGTGGCGCAGGATCATCAA-----------------CCGCCGAATTCAGTGTCCT
GAGCTGAATT---------CAGATGGGAGCCAGCAATGTAGAGGCCAAGCCAAGCAAGTGTGGCAAAATAGCTGCCCATC
AGCTTCATGGCGCATGCTGGTGGTTGAATGAGCTTCATGTAAGATGATGATGGTGATGTTCTGGCCATGGATGAGCCTGG
GGACAACAAATGTGCATATATGTAGT---------AGTATGTGTTCTGTAGAATGGTGCATATCTTCTTGTTGGATCTCC
CTTTGCTGTAGGGGGAGGGTGATGTTTTGTCCTGTGCATTGACCCATCAGAGACATGGGCCCCTCTCTCAGCTTGCCCAT
GGCCTGGTGTCCGTCCGTTCGACAAGCGCGGTCGGGCCCATCACGGGTTTGGGCATCATTTCTCTTCATGTCACATGTCT
CACCACTCCGACTCGTCCTAATCCGTACCGTACCTGGCTGTTTGCCTCTCAAGTGTGTGTGTGTGTGTGTGTGTGAGAGA
GAGAGAGAGAGTAAAATGTAGCTATGTTCAGTGAGTAAAATGTAGGGTCCTGGATGTGTAAAACGAGAACCGTCTGCTTG
------GTGTGCGAAGTAACAGGCCAACAACACAGCACA--ACACA----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTAATAACA
GGCTAACAGCACAGCACAGCACC---------TTTAGATACATTATAACTGAGCACTTTTCCTGCCCTCTCA--------
AGGCTTCTGGCCATCAGATCTACGAGTTTAAGAATTTTTGGCCGTTGGATTGATTTGCAAAAGCTCGTAAGT--------
-TCGCTATACGGGCTGGGCCGCTGCTTCCGTAACAAAATGGACGATCTGCCATTATTTGGGCCTGCTGGGCTTTGAATGT
CCAAGAGACCAACGGAAAAAAAATAGGGCAGTGTTCGCAGCCGCAAGTCCCTCAATCTCGCGGAAAAAGGTTGTTCTC
>chr3B_9
--------CTCCCCCTCCCCTCGTCTCCCGTCCCTATGCTATCTGCTGCCGCTAGAGCCACCCCGAGGAATGAGACCGTG
GTA-----------AACCCAACCGTGGTGGGGT------------------GGGGAGGGAATCCAGGCGGACGGACGGAC
GGACGAGGGAGGAGAATGTCTGGTTCCGGTCTTCATGCTCTGTCCCGTGGCTGCGTGCGTGCGTACGT------------
---------GCTGCGAGATGCGCCGGCAACCCAAAACCAAAAGGCCTCCCTCGCCCTTTTGATTCCCCCACGCCAATGCC
TTTGCTGCCCCCCTGCTCTGCG-----------CCGTGAGAGCCTGGGATTGTT--TCTCTTCTCGCCCCGCCGTTCCGT
TTCGACTTAAAGCTCCTCCCGAGGAAGCTCGCC-CGCCTGCTCGTCTTGGTAGGAGGTGCGGGCCGCGTGACGGTGAG--
----------CTCTCGCACGCACGCCTGCTCTGCTGCTGCTGT------GGAGGAGGAGCAGGGCGACGTTTTCGCCGTT
TCCGTCTTCTTCGTCGTCGTCGTCAGGTATAATTTTGGCACCCTGCGAAGCTCCT--------CCCCTGCAAAATCTCCG
GCCCCTCTTCA---------------TTGCTCGTTTCCGTTTCACTGTCCCCTTCCGACTGCAATAA-----ATCTCCCC
CGTGTTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATAAGCAAGAACCATGCAGAAAATGGCATCTTGATAAACCAAT
CTTTGATCCTA--------------------------TTTC--------------------------TTCTCTCCACTCC
GCTGCCAAATCGGTTCTTTGGTCCATCCAATGGCGCCGGGAGCCGGGACGGCGGCGGCG---ACCAAGAACCCTACCAAA
ACCCTCGCCGCCATCCTCCTCCTCGTCCTCCTGCTCGCCGACCTCCCGCTCTGCGCCTCCCAGCCGCCGCTGCACTCCCA
GCCCCTGCCCGCCACCCAGTCCCCGGCGGCGCCCCTCCCGCCGCCGCAGCCGAGTGCCCCCCACGCGCGGGCCGGCGGCG
CCGCGCGCCTCCGCCGCATCGCGCTCGGCGTGCTCCTCGGCTCGCTCGCCGGCTTCCTCCTCTCCCTCGCCTTCCTCTAC
GCCATCCGCGTCGCCGTGCTACACGCCGGGAACGCGCCGGCCGTCGCCCGGGGCCCCGTCTCCTTCACGCCGCAAATCTC
GCCCAAGAGCCTCCAGGGCGCACTCCCCTCCGCGCGCCCGCTCGCGCGCGGGCCCCGCGGGACGTACCACAAGCTCGACC
TCGACGGCGACCTCACCGTCGCCGTCAAGGTGCTCGACCTCGCCGCCGCCAGCCGCGCCGAGG------CCTCGCCCTCG
CCCTCACGGCCGGCGAACGGCTCCAACTCCAAGTCCGACATGCGGAGGGTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGT
GCGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGACCGGCTCTCGCTCGTCTACGACTTCGTGCCGG
GGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTCAGCCTCAGCTGGGACACCAGGAACAGGATTGCG
GCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCCAGGATACTGCATTGCAACCTCAAGCCGTCCAA
TGTGATGCTGGAGGAAGGCTTCGAACCGGTGCTGGCGGATTGCGGCGTTGCGAGGCTGATCGATTCCGGTTCGCCTGATC
CGCAGTCGTCCGGCAGCCTCTACACCGCTCCAGAGTGCTACCAAAGTAGCAGGTAAAAATCCATGCGTTGTCTTTTTTCA
GTTTTCAGTGCTCAATTCAGCTAAATTTAGTAGTTTGCAGATTGCAGTATTACTA----TTTCTCAAATTGACAATTTGG
TTTGCTTGTCTGTTCATTATAAATGAT-A-TGAGGGGAAATTAAACCTAGGATATGCATCATTATCACTGCAAGGAAGGT
AGCTCTAAAATAAAACTTATGCCGGATTGAGATGTTTGTTGTTAAATTTTGTATTTTCTAA----AAACAGATATCATGT
GTGTACATGTTCACATGCTGCATACT-CAATTTTA--TAGGTACTAAGCAAACAACTCAATGTATTTCAGATTGCTAGAA
ATCTG-------CGATGTCTGCTATTGGCACTGAATAGCTTAAATTTTAAGCTATAAATCATTATATTATTGGTAACACA
TACTTATACATCTGGCAACTAACATGTGTA--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AATT
GTGTAGTGATAATATCATGTCATTTTCTTATTTGAACCATAAGCA-------TTGCAACATTATATAATAGTATATACTA
CCAAAACAAGTGTTTGACATTCCATTGCATTATTGCTTGCATCCATAGTTTCATTTGATTTGTGTCCCCAGTTAACAGTG
CGTAATAATTGGCTAGCAAACACTGTTGTCTGTTTCCTTTCATTAGACTCTTCTGAATTTGGTTTTCTAGTTATCTGACT
GTGTTGACGATAAGTAGACTTCACTTCCGTGCCATTTGAATTTAATCAGTGAAATGAGCAAGAGAGAAGACATAAAGCAT
ATTAATAAAGAATACCACAGGGCTTAATCGAAGGTACCCAGCTTTCGCTTTTTGTAACTGGAGAATCTTTACTTTGTTAG
GGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTAAGCTTTCCATATATTCCCGCATGAGCACATACAGCTGTT
GGCCCACCCCCTGTTCTACT-AAAAATATCGATATATTTCGTTCTAGCCTCTTGTATATAAATCAGAGAATAGATGCTTT
GAGGATTGGTGTTCTATATTCTTATTCCAATCTCGTTCAGATAAGTACATCATCAGTAAACTTATGGG------------
----AATTTAACGTGCAGAAAAGGACTTTCAAGCAGGCTACTTTAACCAGATCAGTAACTCATGATTTATTTATTTATTT
TGTCATGGTTGATCATCAATTTTACAACTTTAGCTGTCTGTAATATAAAACTTCAATTCCACTGCACTTGGTAGGTTGGG
CGATAGTTCCGCTTAGGGGCTATGTTGCCTTTGGCGTTTTGGGCTGCTGTGCGGCTTGTGCTCGGCTGCTTTAGATCTCA
GGGCGTGCATCGTTCTGAACGTGTTTCCCTGGTCAGGTTTCCTTTCTGGTAGCTTGTAACAGACATTGTGGTTTCTGATA
TATGAAAATCGGAGAGGCCGCTCTCTTTTTCAAAAAAAACAAAAACTTTAGTGGTCAATCCTAATAGAGCTTGTGTTTTT
CTTCTGTTAGATGGTTCAGAACTTCAACATCATGTACTGCCATCCATATGTTTTTCAGCTCTTA---GGTGTTTCTGAGT
ATTTAGATTCAAACATTTGCTGGTGCAGGTACACAGATAAGTGCGACGTCTATGCTTTCGGCATGATCCTCGGCGTTCTG
CTCACTGGGAAAGACCCCTCGGACCCATTTTTCTCGGGAGAAAGCGGACGGGGCAGCCTGGCTCGATGGCTCCGTCACAT
GCAGCATTCCGGCGACATGAAAGAAGCGCTGGACAGCAGCATTGTAGGGGAGGAGGTCGATGAGGAGGAGATGGTGATGG
CCATCAGGATCGCCATCGTGTGCCTCTCGGAGTTGCCAGCCGATCGGCCATCCAGCGATGAACTCGTAGCCATGCTCGCC
CAGCTCCACAGCTTCTAACCGCCGTC-------------------------GAACTTCAGAACACCCGCATGATCTTCCA
TCTCGCAAGTCTCGAGACGACGCCGAGTGGCGCACGATCATCAA-----------------CCGCCGAATTCAGTGTCCT
GGGCTGAATT---------CAGATGGAAGCCAGCAATGTAGAGGCCAAGCCAAACAAGTGTGGCAAAATAGCTGCCCATC
AGCTTCATGGCACATGCTGGTGGTTGAGTA----TCATGTAAGATGATGATGGTGATGTTCTGGCCATGAATGAGCCTGG
GGACAACAAATGTGCATATATGTAGTG------GTAGTATGTGTTCTGTAGAATGGTGCATATCTT---GTTGGATCTCC
CTTTGCTGTAGGGGGAGGGTGATGTTTTGGCCTGTGCATTGACCCATCAGAGACATGGGCCCCTCTCTCAGCTTGCCCAT
GGCCTGGTGTCCGTCCGTTCGACAAGCGACGTCGGGCCCATCACAGGTTTGGGCATCATTTCTCTTCATGTCACATGTCT
CACCAATCTGACTCATCCTAATCCGTACCGTACCTGGCTGTTTGCCTCTCAAGTATGTGTGTGTGTGTGTGTGTGTGTGT
GTGT--GTGTGTAAAATGTAGCCATGTTCAGTGCATAATAT----GGTCCTGGATGTGTAAAACGAGAACCGTCTGCTTG
------GTGTGCGAAGTAACAGGCTAACAGCACAGCATATCGCACA----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTAATAACA
GGCTAACAGCACAGCACAACGT-----ATTTATTCAGATACATTATAA-TGAGCACTTTTTCTGCCCTCTCAAGCCATCA
ATGCTTCTGGCCATCAGATCTACGAGTTTAAGAATTTTTGGCCGTTGGATCGATTTGCAAAAGCTCGCAAGTAACCACAG
ATTGCTATGCGAGCTGGGCCGCTGCTCCCATGGCAAAATGGAGGATCTGCCATTATTTGGGCCTGCTGGGCTTTAGATGT
CCAAGAGACCAACGGAG-AAAAATAGGGCAGCGTTTGCAGCCGCACGTCCC-----CTCGCGGAAAAAGGTTGTTCTC
>chr3A_84
--------------------------------------------------------------------------------
---TGGTAAACGTAAACCCAACCGTGGTGGGGTGGGGTGAAA------ACGGGGGAGGGAATCCAGGCGGACGGACGGAC
GG----GGGAGGAGAATGTCTGGTTCCGGTCTCCATGCCCTGTCCCGTGGCTGCGTGCGTGCCGTGCGTGCGTGCTGAGC
CTGAGCTGAGCTGCGAGATGCGCCGGCAACCCAGAAAGCCTCG------CCCGCCCTTTTGATTCCCCCACGCCAACGCC
TTTGCTGCCCCCTGCTCCGCTCCCCTCCGCTCACCGTGGGAGCCTGGGACTGTTTCTCTCTTCTCGCCCCGCCGTTCCGT
TTCGACTTAAAGCTCCTCTCGGGAGGGAGAAGCTCGCCCGCTCGTCTTGGTAGGAGGCGCGGGCCGCGTGACGTGACGGT
GAGCGGCTCTCTCTCTCTCGCACGCCTGCTCTGCCCCTGCGGAGGAGGAGGAGGAGGAGCAAGGCGACGTTTTCGCCGTT
TCTGCCTTCTTCCTCGTCGTCGTCAGGTATAATTTTGGCACCGTGCAGAGCTCCTCGCGCCCTCTCCTGCGAAATCGGCG
AGCCCTATTCATTGCGCTGAGTGAGCTTGCTCGTTTCCGTTTCGCTGTCCTCTTTCGGCTGCAATCAATCTCATCTCCCC
CTTGTTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATAAGCAGGAAGCATGCGGAAAATGGCATCTTGGTACACCACT
CTTTGATTCTA--------------------------TTCCTCGAGCATTATCCCTAGAGCGAATTTTTCTCTCCTCCCC
GCTGCCAAATCGGTTCTTTGC----TCCAATGGCTACGGGAGCCGGGACGGCGGCGGCGGCGGCCAAGAACCCTACAAAA
ACCCTCGCCACTCTCCTCCTCCTCGTCCTCTTGCTCGCCGACCTCCCGCTCTGCGCCTCCCAGCCGCCGCTGCACTCCCA
GCCCCTGCCCGCCACGCAGTCCCCGGCCGCGCCCCTCCCGCCGCCGCAGCCCAGGGGCCCCCGCGCGCAGGCCGGCGGCG
CGGCCCGCCTCCGCCGCATCGCGCTCGGCGTGCTCCTCGGCTCGCTCGCCGGCTTCATCCTCTCGCTCGCCTTCCTCTAC
GCCATCCGCGTCGCCGTGCTCCACGCCGGGAACGCGCCGGCCGTCGCCAGGGGGCCCGTCTCCTTCACCCCGCAAATCTC
GCCCAAGAGCCTCCAGTGCGCGCTCCCCTCCGCGCGCCCGCTTGCACGCGGGCCCCGCGGGACGTACCACAAGCTCGACC
TCGACGGCGACCTCACCGTCGCCGTCAAGGTGCTCGACCTCGCCGCCGCCGCCGGCGCCTCACCCTCACCCTCGCCGTCG
CCCTCGCGGCCGGCGAGCGGCTCCAAGTC------CGACATGCGGAGGGTGCAGCGGCAGCTGGAGCTGCTCGCCCGGGT
GAGGCACCTCAACGTGATGAGCCTCAAGGCCTACGTCCGCGACGCCGACCGGCTCTCGCTCGTCTACGACTTCGTCCCGG
GGGGCAGCCTCGAGGACGTGATGAAGAGGGTGAGGTCGCAGCAGGTCAGCCTCAGCTGGGACACCAGGAACAGGATTGCG
GCCGGGGTGGCCAAGGGACTGCGCCACCTGCACTTCGAGTGCAACCCCAGGATACTGCATTGCAACCTCAAGCCGTCGAA
TGTGATGCTGGAAGAAGGGTTTGAACCGGTGCTGGCGGATTGCGGCGTTGCGAGGCTGCTCGATTCGGGTTCGCCTGATC
CGGAGTCGTCCGGCAGCCTCTACGCAGCTCCAGAGTGCTACCAAAGTAGCAGGTAAAATTCGATGTGTTATCTTTTTTCA
GAGTTCAGTGTTCAATTCAGCTAAATCTAGTACCTTGCATATTGCAGTATAACTACTACTTTCTCAAATTGACAATGTGG
TTTGTTTGTCTGTTCATTATAAATTATAA-TGAGGGAAAATTAAACCTAGGATGTGCATCGTTATCACTGCGAGGAAGGT
AGCTCTAAATATATCTTTCGTAAAATCAAGAATTTTTGCTGTTAGATTTTGTATTTTTTTATTAGAAGCAGATATCATGT
GTGTGCATGTTCAAATGTTGCATACCACAATTTTG--TAGATATGAAGCAAACAAGAG---GTATTTCAGATTGCTAGAA
ATCTG-------TGATGTGTGATAGCAACAGC--------------------------TCATTAAAATTTTGTTAACCCA
TACTTATTCATCTGGCATGGGAGGAGTCCGTTAAGAGAGACCTGAAGGATTGGGGTATCACCGAAGAGCTAGCTATGGAC
AGGGGTGCATGGAAGCTTGCTATCCATGTGCCAGAGCCATGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTA
CCCCAACTTGCTTGGGACTAAAGGCTTTGTTGTTGTTGTTGTTGTTTATACTTATTCATCTGGCAACTAAATGTGTAATT
CTGTGGTGATAATATCAGACCATTTTTTTTTCATTTGAACTAGCACAAGCATTTGCAACATTATG--------TACACTA
CCAAAACAAGTATTTGACATTCCATTTCATTATTGCTTGCATCCATAGTTTCTTTCGATTTGCGTCCCCAGTTAACAGTG
CGTAATCATTGGCTAGCAAACAGTGTTGTCTGTTTCCTTTCATTAGACTCTTCTGAATTTGGTTTTCTAGTCATTTGACT
GTGTTGACGATAAGTAGACTTCACTTCTGCGCCATTTAAATTTAATCAGTGAAATGAGTAAGAGAGAAAACATAAAGCAT
ATTAATAAAGAATACCAGAGGGCTTAATCGAAGGTACCCAGCTTTTGCTTTTTGTAACTGGAGAATCTTTACTTTGTTAG
GGAACCTGCATCTAACCTTTTTGAATTACCTTTGATTGTTACGCTTTCCATATATTCCCGCATGAGCACATACAGCTGTT
GGCCCACACCCTGTTCTACTAAAAAATATCGATATATTTCATTCTAGCCTCTTGTATATCAATCAGAGAATAGATGCTTT
CAGGATTGGTGTTCTATATTCTTATTCCAATATCCTTCAGATAAGTACATCATCGGTAAACTTATGGGAAGTTAACATGC
AGATAA----------------GGACTTTTAACCAGACTACTTTAACCAGATCAGTAACTCATGATTTG----TTTATTT
TGTCATGGTTGATCATCAATTTTGC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AACTTTAGTGGTCAATCCTAATAGAGCTTGTGTTTTT
CTTCTGTTAGATGGTTCAGAACTTCAATATCATGTGCTGCCATCCATATGTTTTTCAGCTCTTATTAGGTGTTTCTGAGC
ATTTAGATTCAAACATATGCTTGTGCAGGTACACGGATAAGTGCGACGTCTATGCCTTCGGCATGATCCTTGGCGTTCTG
CTCACCGGGAAAGACCCCGCAGACCCGTTTTTCTCAGGAGAAAGTGGACGGGGCAGCCTGGCTCGATGGCTCCGTCACAT
GCAGCATTCCGGCGACACGAAAGAAGCGCTGGACAGCAGCATCGTAGGGGAGGAGGTCGACGAGGAGGAGATGGTGATGG
CCGTCAGGGTCGCCATCGTGTGCCTCTCGGAGCTGCCCGCCGATCGGCCATCCAGCGATGAACTCGTCGCGATGCTTGCC
CAGCTCCACAGCTTCTAGCCACCTCCATCATCGTTCTAGCAGAAAGTTTCTTCAGAA---------------------CA
TCTTCCATCGCGCCAGACGACGCCGAATGGAGCTGGATCGGACCCCGGCCGGCCATACAGTCCCACCATTTCAGCTTCTT
GAGCTGAATTCAGTTTGTCCAGATGGGAACCAGCAATGTAGAGGCCGAAC--AACAAGTGTGGCAAAAT-----------
AGCTTCATGGCACATGCTGGTGGTTGAGG----TTCATGTAAGATGATGATGGTGATGTTCTGGCCATGAATGAGCCTGG
GGACAACAAATGTGCATATATGTAGTGTAGACTGTAGTGTGTGTTCTCCAGAATGGTGCATATCTT---GTTGGATCTCC
CTTTGCTGTAGAGGGAGGGTGATGTTTTGGCCTGTGCATTGACCCATCAGAGACATGGGCACCGCTCTCTGCTTGCCCAT
GGCCTGGTGTCCGTCCGTTCGACAAGCGTCGTCGGGCCCATCACAGGTTTGGGCATCATTTCTCTTCATGTCACATGTCT
CACCACTCCGACTCACCCTAATCCGTACCGTACCTGGCTGTTTGCCTCTCAAGTAC-------------------TGTGT
GTGT--GAGAGTAAAATGTAGCCATGTTCAGGGCATAGTAT----GGTCTTGGATGTGTAAAACGAGACCCGTCTGCTTG
------GTGTTTGAAGTAACAGCCTAACAACACAACACACAGTAATAAAAGAGTAATGCTAGAGCTACAGACTTGTTTTA
CAGGGTTTATTGCACAGGCTGATGTGGAGCAAACTGATTGGTTTAGGATTAGCAGCCGGGCCCCCACCCCCTGAAATCAG
GAGGGGCGAGCGAATTAGCAAGAGGGGGTCCGTAACACACTCGTAAAACCCCCGTACGTTTAGGATTACTCGTAATAAAA
TGCTAACAGCACAGCAC----------ATTTATTTAGATACATTATAACTGAGTACCTT---------------------
----TTCTGGCCATTAGATCAACGAGTTTAAGAATTTTTGACCGTTGGATCGATTTGCAAAAGCTCGTAAGTAACCACAG
ATCGCCATACGGAATGGGCCGCTGCTCCTGTAACAAAATGGACGACCTGCCATTATTTGGGCCTGCTGGGCTTTAGATGT
CCAAGGCACCAACTG--AAAAAATAGGGCAGTGTTCGCAGCCGCACGTCCCTCAATCTCGCGGAAAAAGGTTGTTCTC
>chr3A_3894
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------TGTCCGTCCGTTCGACAAGTGTACTCGGGCCCATCATAGGTTTTGACATCATTTCTCTTCATGTCACATGTCT
CACCACTCTGACTCATCCTAATCCGTACCGTACCTGGTTGTTTGCCTCTCAAGTA--------------------TGTGT
GTGT--GTGTGTAAAATGTAGCCATGTTCAGTTCATGGTAT----GCTCCTGGATGTGTAAAACGAGAACCGTCTGCTTG
TGCTTGGTGTGCGAAGTAGCAGGCTAACAACACAACACCGCACACA----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTAATAATA
GGCTAAGAGCATAACATGGCACATTTAATTTATTTAGATAAATTATAACTGAGCACTTTTCCTGCCCTCTCAACCCGTCA
AGGCTTCTGGCCATCAGATCTACAAGTTTAAGAATTTTTGGCTGTTAGATCGATTTGCGAAAGCTCATAAGTAACCACAT
ATCACTATACGGGATGGGCCGCTGCTCCTGTAACAAAATGGACGACCTGCCATTGTTTGGGCCTACTGGGCTTTAGATGT
CCAAGACACCAACTG--AAAAAATAGGAAAGTGTAAGCAGCCGCACGTCCCTCAAACTCGCGGAAAAAGGTTCTTCTC
>SNPs
SSSSSSSS--S------S---------S--S-----------S---------------------------S---------
------------------------S-----S------S-SS-SSSSSS--------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
--------S--------S--------------------------------S-S---------------------------
---------------------S----------------------------------------------------------
------------S------------------------SSS-S--SS-S--------------------------------
---------------------S----------------------------------------------------------
-------------------------------------------S-----------------S-----SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
------------------------------------S-------------------------------------------
----------------------------S--S------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
-----------S----------------------------S--------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------S-----------S-------------------------------SS------------S-S--S--S
-------------------------------------S------------------------------------------
-----------------------------S------------S----S---S-------------------S-----S--
--S----S------------------------------------------------------------------------
-----------------------------------SS-------------------------------------------
-----SSSSSSS------------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------------------------S-------S--------------------S----------
-S--------S--------S---------S--------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------S---------
-----------------------------S--------------------------------------------------
---------------------------------S-----------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------S-----------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------------S--------------SS-S--S-S--S----------------------S-----S-----
------S----------------S--------------------------------------------------------
-----------------------------------------------------S--------------------------
-----------S---------------S-SSSS------------------------------------S----------
------------------------------------------------------------------SSS-----------
-----------------------------S--------------------------------------------------
----------------------------SS--------------S-----------------------------------
--------------S---------------------------------------S--------------------S-S-S
-S-SSS----------------S----------SS---S--SSSS-----------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------S-----------------------------------------------SS----
----------------S----------------------------S--------------------------------
>forward_684
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------------------------GCAGAGCTCCTTCCGTTTCT------------------------------------
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>reverse_2490
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---------GTGCGATGTCTGCTATTGGC---------------------------------------------------
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------------------------------------------------------------------------------
>forward_1073
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-------------ACTCGAGCATTTCCCGTTGA-----------------------------------------------
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>reverse_3064
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-----------------------GTTCCGCGCCATTTGAATTT-------------------------------------
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>forward_2106
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------CGTCCGGTAGCCTCTACACT------------------------------------------------------
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>reverse_4550
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---------------------------------------------------------------------GATGAGCCTGG
GGACAACAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
