>input_sequence_32306
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-------------------------------------------ATGGCAGCCGCCTCCGCCTCCGCCGGAAACGCGGGCG
AGCCGCGGCTCGTCGACCGCTGCATCGACGCAGCGGCGCGGTGCCGAGCATCCGTGGAGGCCTGGCGCCGCCAACGCCGG
TCCCTCGAGCGCCTGCCCGGGCAGCTGGCCGACGCGCTCCTCAGCCGCCTCGCCGCTCGCCGCCTCCTTTCCCCCTCCCT
CCTCGAGTAAGCGCCCCGCCTTCTCCACCCAGA-CATGCCCGATC-TTTTCTTTGTTTTCTCTACCATGAGT-GGTTTTG
CGCTGTTCCGTTTCTGGATCTGTTGCTTCCTGCCGCGTGCGGATGAATCGTGCTTGTGTGCGCAGGGTTTTCCAGCACTC
GGTGCAGGAGATCGACTTCAGCGGCAACATCGCCGTAGATGCGGAGTGGCTGGCTTACCTCGGCTCCTTCCGTTACCTGG
GCATCCTCAAGCTGGCGGACTGCAAGAAGGTCGACCACTCCGCGATCTGGGCACTGTCCGGTACAACTCGCGAGTCTATT
TCTATAAT---GAAACCATGATTTCCAGTACATAGTTTCGAAACATGACTTAGTTTGATTGAAGA----AATTAATTGCC
TTACTAAAAC-----AAAATTGCTCTGATGATTCAGGCATGAGTATGCTAAAAGAATTGGACCTGTCGAGATGCTCTAGG
ATAACTGATGCCGGCATCAAACATATAGTCTCCATTGATAGTCTGGAGAAGCTACACTTATCTGAGACTGGATTGACTGA
CAATGGAGTGATGCTCATTTCAGCACTAAAAGGTTTAAATTTGCTAGATTTGGGAGGAATTCATATGACCGACAAAGCGT
TGCGGTCATTACAGGTACATACTCTCATGATGTGCGACCATTTTTC-CCCCATTAACGGATGCAGAGAGATTCTCCTATG
CTAACCTTGTCTCATCTTGTAATCTTTATATTTTCTGATAGCATATTTA--CATATCAGTATGCCACTGCTTGCTCATTT
CTTTTTGAATGACGCGTAATGGAGTATTAATTTATAGTTGTTACTGTTCCAGGTATTGACACAACTTGAGCACCTTGATA
TATGGGGTAGTGAAATTACTGATGAGGGAGCTTCAATCCTTAAGGCGTTTACAAGATTGAGGTTCTTAAATGTTTCTTGG
ACACATGTGACTCGTCTACCACCTCTTCCAAACATGAAATATCTTAATATGAGCAACTGTACAATTTATTCCATTCGTGG
CGGTGATTCTGAAGTTCATATTCCTCTGCAAAAGTTTACGGCCTCTGCAGCCTCAATTGTTGACGTTGATGAAGTGTTCT
CTAGCATCGTAGCAAGCTCATTTTCATTCTTGGATATGTCTGGTTGTTCTTTAAGCAACTTATATGGCCTGCAAAAGATG
AAAAGTCTAGAGCATTTGGACCTTAGCTTGAGCAGAGTAACTGACGATGCAATCGAGTATGTTGCAAATATTGGAATGAA
GCTGAGATATCTAAGCCTCAAGAATACTGGAATAACCTCTCAGGCACCATGTATTTTGGCAGGAACAGTTCCAAACCTGG
CTTCACTGTCTTTAGCTTATACAAAAGTTGATGATTCTGCTCTAGTATATATCAGCATGATGCCTTCATTGAGAGTGATA
GATCTAAGTCATACAAGTATCAAAGGTTGCTTTTTTGCTTTGCATTTATTTCTTTTTCTTGATTAAATAAACATGCTTTC
TCTTTGAGAAACTGAATTCTATCATATGACAGGGTTCACTTGTGTTGAAGCAAACTCAGAGAAAATACTGTCTCTGCCTC
TACTTGAGCATCTCATATATCTTGAAAGTCTAAATCTGGAGGATGCACCACTGTCAGATGAAGTTATACCTCCCA----T
GGCATCCTTTAGAGCACTAAAATATTTGTACCTGAAAAGTGATTTCTTG--TCTGATCCCGCATTGCATGCCCTGTCTTC
TGCCTCAAATTTGATACATCTTGGATTTTGTGGGAGTGTAT-----TATCAAACTCTGGGCTTCTGCAATTTGTGCCCCC
TGCCCAACT-ACATGTGTTGGATTTAAGTGGCTGCTGGGTCTTAACAGAGTATGCCATCTCAT-----CATTTCGTAGC-
--CATCACCCGATGATAGAGTTGAGACATGAACTAATTCAGGAACTTCAACCAAGCCACATCGGTACTTCACAAGTTCGC
AAGTCTAGGCATCTTCCACGGGCAAAAACAAAAGTTTTTAATAGCTCGGCTGATT------------CTAGCAGGCA---
TTCTGGTATCTTCTTCATGGGTAAGGGTGATGTAACTTCAATCTGCTTTA----------------------------TT
CTCTTTCAGTTAGAAGGAATATAATCCGAGTGAGCTATGTGCTTTATAACATATGATAACAAATTTGCCT----TTTGAT
T-----TAAACAGATCAAAGGATAAAATACAGCAGGGAGAAAATGCTGGAGAT-CCAAGATCTTACCCAATCGAATTCAG
TGTTACATGATGTGCAGCTTCCACCAGAGCTGCGACGGATGGAATGA---------------------------------
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--------------------------------------------------------------------
>chr3B_1_TraesCS3B01G405800
TCGTGGGTTGAAGTCTCCATCAACGTGGACGTACGATAGCACCACCTATCGTAACCACGCCAAAAATCTCCGTGTCTTCA
TTGCGTTTGTCTTCTTCAAACCCTTCCCTTTACCTTCATATGCAATGTTTTACTTTCCGTTGGTACACTCTTAGAATTGC
ATGTGTAGGTTGATTACTTGACTTGTGCTAATTGCTAAAATCTGCCCACAACTAAAAATGGGAAAATGATAGATTTTTAT
TTGATCAAGTAGTCTAATCACCCCCCTCTAGTCATACTTTCAATCCTAGAATTGAGTTCTTCAATCCTGCATCGATGGAA
ATCGACAACATTTGTTCTTCTAATCTGTTATTTCTGTATGTTCGTCCTATTGCTCTGATGTGTAGAGCGAAAATGCGTGA
TAACGTGTTTCAAGTGAAACGTTGAGAACGAGAGAGAGATATCCGGGCAGAAGCACACATATTGCTTGAGAATTAAGTAA
ATACTCTAAAATAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGGAGAAAATATCTAGTGCAATACAGACTAAG
ATGCAACCGTGATACTATCATGGGCTCTTAAGCCGTCGGATTCTCAGATCGGACGCATCCCGGTAACTCTGCAACATCTG
CAAAAAAACCCTCCTAATATGCGCATTGATTCAGCAGATCCAACAAGCCCCATATGCCATCCGATCTGAGAATCAGACTC
ACAG------GTAGCACATGAGCCTGGGTAGCACC--ATACTCTCCCACAGAGGGAGGGAATACATGATTACTT-GAGGC
CAACG-AATTAGAGAGTTACCTTGAAAAAA-TAGGAATTACAAAG--CTTGAGAGCCAAGGAAGTACT------------
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----------------------------------------------------------ACTACATGATTAATACAAACAT
CTACTAGTAACAAATCCTACGCCGTGCGGAGCTCTGCGAGGACCCCCAGATCCCATCATTTCGCCCCCTCCCGTCAAGCG
GCGGCTCGCACCGAAGCGCCTGACTTGCCGTGCCGTCCAACCCATGGCAGCCGCCTCCGCCTCCGCCGGAAACGCGGGCG
AGCCGCGGCTCGTCGACCGCTGCATCGACGCAGCGGCGCGGTGCCGAGCATCCGTGGAGGCCTGGCGCCGCCAACGCCGG
TCCCTCGAGCGCCTGCCCGGGCAGCTGGCCGACGCGCTCCTCAGCCGCCTCGCCGCTCGCCGCCTCCTTTCCCCCTCCCT
CCTCGAGTAAGCGCCCCGCCTTCTCCACCCAGA-CATGCCCGATC-TTTTCTTTGTTTTCTCTACCATGAGT-GGTTTTG
CGCTGTTCCGTTTCTGGATCTGTTGCTTCCTGCCGCGTGCGGATGAATCGTGCTTGTGTGCGCAGGGTTTTCCAGCACTC
GGTGCAGGAGATCGACTTCAGCGGCAACATCGCCGTAGATGCGGAGTGGCTGGCTTACCTCGGCTCCTTCCGTTACCTGG
GCATCCTCAAGCTGGCGGACTGCAAGAAGGTCGACCACTCCGCGATCTGGGCACTGTCCGGTACAACTCGCGAGTCTATT
TCTATAAT---GAAACCATGATTTCCAGTACATAGTTTCGAAACATGACTTAGTTTGATTGAAGA----AATTAATTGCC
TTACTAAAAC-----AAAATTGCTCTGATGATTCAGGCATGAGTATGCTAAAAGAATTGGACCTGTCGAGATGCTCTAGG
ATAACTGATGCCGGCATCAAACATATAGTCTCCATTGATAGTCTGGAGAAGCTACACTTATCTGAGACTGGATTGACTGA
CAATGGAGTGATGCTCATTTCAGCACTAAAAGGTTTAAATTTGCTAGATTTGGGAGGAATTCATATGACCGACAAAGCGT
TGCGGTCATTACAGGTACATACTCTCATGATGTGCGACCATTTTTC-CCCCATTAACGGATGCAGAGAGATTCTCCTATG
CTAACCTTGTCTCATCTTGTAATCTTTATATTTTCTGATAGCATATTTA--CATATCAGTATGCCACTGCTTGCTCATTT
CTTTTTGAATGACGCGTAATGGAGTATTAATTTATAGTTGTTACTGTTCCAGGTATTGACACAACTTGAGCACCTTGATA
TATGGGGTAGTGAAATTACTGATGAGGGAGCTTCAATCCTTAAGGCGTTTACAAGATTGAGGTTCTTAAATGTTTCTTGG
ACACATGTGACTCGTCTACCACCTCTTCCAAACATGAAATATCTTAATATGAGCAACTGTACAATTTATTCCATTCGTGG
CGGTGATTCTGAAGTTCATATTCCTCTGCAAAAGTTTACGGCCTCTGCAGCCTCAATTGTTGACGTTGATGAAGTGTTCT
CTAGCATCGTAGCAAGCTCATTTTCATTCTTGGATATGTCTGGTTGTTCTTTAAGCAACTTATATGGCCTGCAAAAGATG
AAAAGTCTAGAGCATTTGGACCTTAGCTTGAGCAGAGTAACTGACGATGCAATCGAGTATGTTGCAAATATTGGAATGAA
GCTGAGATATCTAAGCCTCAAGAATACTGGAATAACCTCTCAGGCACCATGTATTTTGGCAGGAACAGTTCCAAACCTGG
CTTCACTGTCTTTAGCTTATACAAAAGTTGATGATTCTGCTCTAGTATATATCAGCATGATGCCTTCATTGAGAGTGATA
GATCTAAGTCATACAAGTATCAAAGGTTGCTTTTTTGCTTTGCATTTATTTCTTTTTCTTGATTAAATAAACATGCTTTC
TCTTTGAGAAACTGAATTCTATCATATGACAGGGTTCACTTGTGTTGAAGCAAACTCAGAGAAAATACTGTCTCTGCCTC
TACTTGAGCATCTCATATATCTTGAAAGTCTAAATCTGGAGGATGCACCACTGTCAGATGAAGTTATACCTCCCA----T
GGCATCCTTTAGAGCACTAAAATATTTGTACCTGAAAAGTGATTTCTTG--TCTGATCCCGCATTGCATGCCCTGTCTTC
TGCCTCAAATTTGATACATCTTGGATTTTGTGGGAGTGTAT-----TATCAAACTCTGGGCTTCTGCAATTTGTGCCCCC
TGCCCAACT-ACATGTGTTGGATTTAAGTGGCTGCTGGGTCTTAACAGAGTATGCCATCTCAT-----CATTTCGTAGC-
--CATCACCCGATGATAGAGTTGAGACATGAACTAATTCAGGAACTTCAACCAAGCCACATCGGTACTTCACAAGTTCGC
AAGTCTAGGCATCTTCCACGGGCAAAAACAAAAGTTTTTAATAGCTCGGCTGATT------------CTAGCAGGCA---
TTCTGGTATCTTCTTCATGGGTAAGGGTGATGTAACTTCAATCTGCTTTA----------------------------TT
CTCTTTCAGTTAGAAGGAATATAATCCGAGTGAGCTATGTGCTTTATAACATATGATAACAAATTTGCCT----TTTGAT
T-----TAAACAGATCAAAGGATAAAATACAGCAGGGAGAAAATGCTGGAGAT-CCAAGATCTTACCCAATCGAATTCAG
TGTTACATGATGTGCAGCTTCCACCAGAGCTGCGACGGATGGAATGAGACAAGTTCTGGTTTGCTTTTCTCATGCACTTC
AGTCTCGTCATTTGATTGAATAGTGCATCTATTTTCTCGGGGGACATCGCAATTTTGAATTAGCTAAAGACAGCTCGTCA
TTTGATTAAATAGTGCTTCTCTCACTGTATACTGCCAACTGTCTGA--GTTGTAACATGAAGAAT----TTGCTT-G--T
ATGATTTATATGCCTTTGTGATCCTGAAGTATGTATTCAGTCATTTCATTTGTTTTAACAGAGGGCATTTGTGTTATGTT
GTTCAGATGTGA--CCATGGGTTCAAATGGTTGATGCTTCCTGATGTAGGATGATTTTTGTCTTAAA---------GTAT
TTGCCATTTGATCATGATCAGTCTTATTACCCATGAGCAATACATGGTAAACGAAGGAGAGTCCATGAGGTGCAGCATTT
TCCATGTAAACATTGTTC-----------CTATGTCGATCATTTTGTTCCTTCCTGGGTGGAAAATAAC-----------
-----------AATTAA-TGGACGTATTTGTTCTTCTAACCAGCTAC-------GGACTTCCGGAAGTTGC---------
--------------GAAACAAGCTGCTGGTGAAA-TCGAATTGTTCATATAACTATACACAG-CTATAACTGTACGATAA
ACTAACT-------------------GTACAGAAACAATTCCCATAAAAAAA-CTATACAGAAACAATTATAGAAATTTG
CAA-----------------------------------------------------------------------------
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-------------------------------------------------------------------------ACACACG
GAGATTCTTAAAGATCCTTGTTGGTTTTGTTGGGTGATGTACT------------------------GTAATCAAACC-A
ATGCCACAGCAATCTTCTCGCTGTGCTGAAGCAGACA---CTCCTTGAGCTCATCTGACATGTAATGGAGCACAATGCTT
GTGTCTGGTACATAGTCAATGTCTTTAATTTCTCTAATCAGCCAACT----ATTGCGTAGATCTCTTGTGCTTGCGTATG
GCCGGTGTCACCAGCTCGGAACTCGAGAATG--GTT-----------TCCAACTCAAGCCAGTTTCTATACTCAAGTTCT
TTTGTTTCATCAGACCCCTTATTCTTGCAACTTCATCCCATAAACCAGCATGGGCATACAAGTTTGAG
>chr3D_689
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------------------------------------------------CCCAAATGACATCTGATCTGAGAACCAGACTC
CCAGGAGCCCGTAGCACCTGAGCCTCGGTAGCACCAGATACTCTCCCATGGAGGGAGGGAATACATGATTACTTAGAGGC
CAACG-AATTAGAGAGTTACCTTGAAAAAAATAGGAATTACAAAG--CTTGAGAGTATACCTGGCCATACCTCGGGCCGG
GCCTAGCCAAGCCCGACGCAAAAAACCCAGGCCCGGCCCGGCCGTCGGGCCTGTTTTTTGGGCCCGAGCCCGGCCCGAAC
ACGTAAAAGCCCGTCCGGCTTCGGGCCGGCCCGGCCCGTCCTTCAGGAAAACGCAAAAACGATGGGCCCGGGCCCGGCCC
GGCCCGGTCTTCGTGCTCAAAATCTAGGCCCAAGCCCGGCCCAGGAGTGGTGTCGGGCTGGGCCGGGTCGGGCTTTTTCG
GGCCGGGCCGTTCGGGCCGGGCTGCCCATGGCCAGGACTACTTGAGAGCCAAGGAAGCACTACATGATTAATACAAACAT
CTATTACTAACAAATCCTACGCCGTGCGGAGCTCTGCGAGGACCCCCAGATCCCCTCATTTCGCCCCCTCCCGTCAAGCG
GCGGCTCGCACCGAAACGCCGGACTTGCCGTGCCGTCCAACCCATGGCAGCCGCCTCCGCCGGAGGA------GCGGGCG
AGCCGCGGCTCGTCGACCGCTGCATCGACGCAGCGGCGCGGTGCCGAGCCTCCGTGGAGGCCTGGCGCCGCCAACGCCGG
TCCCTCGAGCGCCTGCCCGGGCAGCTGGCCGACGCGCTCCTCAGCCGCCTCGCTGCTCGCCGCCTCCTTTTCCCCTCCCT
CCTCGAGTAAGCGCCCCGCCTTCTCCACCCAGA-CATGCCCGATCTTTTTCTTTGTTTTCTCTACCATGAGACGGTTTTG
CGCTGCTCCGTTTCTGGATCTGTTGCTTCCTGCCGCGTGCGGATGAATCGTGCTTGTGTGCGCAGGGTTTTCCAGCACTC
GGTGCAGGAGATCGACTTCAGCGGCAACATCGCCGTAGATGCGGAGTGGCTGGCTTACCTCGGCTCCTTCCGGTACCTGG
GCATCCTCAAGCTGGCGGACTGCAAGAAGGTCGACCACTCCGCGATCTGGGCACTGTCCGGTACAACTCTCAAGCTTATT
TCTATAATGATGAGACCATGATTTCCAGTACATAGTTTCGAAACATGACTTGGTTTGATTGAAGA----AATTAATTGCC
TTACTAGTTC-TAATAAAATTGCTCTGATGATTCAGGCATGAGTATGCTAAAAGAATTGGACTTGTCGAGATGCTCTAGG
ATAACTGATGCCGGCATCAAACATATAGTTTCCATTGATAGTCTGGAGAAGCTACACTTATCTGAGACTGGATTGACTGA
CAATGGGGTGATGCTCATCTCAGCACTAAAAAGATTAAATTTGCTAGATTTGGGAGGAATTCATATGACCGACAAAGCAT
TAAGGTCATTACAGGTACATA--CTCATGATTTGCGACCATTTTTTTCCCCATTAACTGGTGCAGAGAGATTCTCTTCTG
CTAACCTTGTCTCATCTAGTAATGTTTATATTTTCTGATAGCATA--TA--CATATCAGTATGCCACTGCTTGCTCATTT
CTTTTTGAGTGGCGCGTAATGGAGTATTAATTTATAGTTGTTACTGTTCCAGGTATTGACACAACTTGAGCACCTTGATA
TATGGGGTAGTGAAATTACTGATGAGGGAGCTTCTGTCCTTAAGGCGTTTACAAGATTGAGGTTCTTAAATGTTTCTTGG
ACACATGTGACTCGTTTGCCACCTCTTCCAAACATGAAATATCTTAATATGAGCAACTGTACAATTTATTCCATTCGCGG
TGGTGATTCTGAAGTTCATATTCCTCTGCAAAAGTTTACGGCCTCTGCAGCCTCATTTGGTGACATTGATGAGGTGTTCT
CTAGCATCGTAGCAAGCTCATTTTCATTCTTGGACATGTCTGGTTGTTCTTTAAGCAACTTATATGGCCTGCAAAAGATG
AAAAGTCTAGAGCATTTGGACCTTAGCTTGAGCAGAGTAACTGATGGTGCAATCGAGTATGTTGCAAATATTGGAACGAA
GCTGAGATATCTAAGCCTCAAGAATACTGGAATAACCTCTCAGGCACCATGTATTTTGGCAGGAACCGTTCCAAACCTGG
CTTCACTGTCTTTAGCTTATACAAAAGTTGATGATTCTGCTCTAGTATATATCAGCATGATGCCTTCATTGAAAGTGATA
GATCTAAGTCATACAAGTATCAAAGGTTGCTTTTTTGCTTTGCATTTATTTCTTTTTCTTGATTAAATAAACATGCTTTC
TCTTGGAGAAACTGAATCCTATCATATGACAGGTTTCACTCGTGTTGAAGCAAACTCCGAGAAAATACTGTCTCTGCCTC
TACTTGAGCATCTCATTTATCTTGAAAGTCTAAGTCTGGAGGATGCACCACTGTCAGATGAAGTTATACCTCCCA----T
GGCATCCTTTAGAGCACTAAAATATTTGTACCTGAAAAGTGATTTCTTG--TCTGATCCCGCATTGCAGGCCCTGTCTTC
TGCCTCAAATTTGATACATCTTGGATTTTGTGGGAGTGTAT-----TATCAAACTCTGGGCTTCTGCAATTTGTGCCCCC
TGCCCAACT-ACATGTGTTGGATTTGAGTGGCTGCTGGGTCTTAACAGAGTATGCCATCTCAT-----CATTTCGTAGC-
--CATCACCCGGTGATAGAGGTGAGACATGAACTAATTCAGGAACTTCAACCAAGCCACATTGGTACTTCACAAGTTCGC
AAGTCTAGGCATCTTCCACGGGGAAAAACAAATTTTTTTAATAGCTCGGCTGATT------------CTAGCAGGCA---
TTCTGGTATCTTCTTTGTAGGTAAGGGTGATGTAACTTCAATCTGCTTTA----------------------------TT
CTCTTTCAGTTAGAAGGAATATAATCCGAGTGAGCTATGTGC---ATAATATATGATAACAAATTTGCCT----TTTGAT
T-----TGAACAGATCAAAGGATAAAATACAGCAGGGAGAAAATGCTGGAGAT-CCAAGATCTTACCCAATCGAATTCAG
TGTTACATGATGTGCAGCTTCCACCAGAGCTGCGAAGGATGGAATGAGACAAGTTCTGGTTTACTTTTCTCGCGCACTTC
AGTCTCATCATTTGATTAAATAGTGCATCTATTTTCTTGGGGGACATCGCAATTTTGAATTAGCTAAAGACAGCCCGTCA
TTTGATTAAATAGTGCTTCTCTCACTGTATACTGCCAACTGTCTGA--GTTGTAACATGAAGAAT----TTGCTT-G--T
ATGATTTATATGCCTTTGTGATCCTGAAGTATGTATTCAGTCAGTTCATCTGTTTTAACAGAGGGCATTTGTGTTATATT
GT-CAAATGTGA--CCATGGGTTCAAATGGTTGATGCTTCTTGATGTAGGATGATTTTTGTCTTAAACG-----------
-------------------AGTCTTATTA--------------------------------TCCATGAGGTGCAGCATTT
TCCATGTAAACATTGTTC-----------CTAAATGGATCATTTTGTTACTTCCTGGGTGGAAAATAACCAAGTTCATTC
CCCCTGCTGGGAATTAA-TGGACGTATTTGTTCTTCTAACCAACTAC-------GGACTTCTGGAAGTTGCAAGTAT-TG
CACAAAAAAGATAAGAAACAAGCAGCTGGTGAAA-TTGAATTGTTCATATAACTATACACAG-CTA--------------
--TAACT-------------------GTACAGAAACAATTCCCATAAAAAAAACTA------------------------
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---ATTCTTAAAGATCCTTGTTGGTTTTGTTGGGTGATGTACTA-----------------------GTAATCAAACCAA
ATGCCACAGCAATCTTCTCGCTGTGCTGAAGCAGACA---CTCCTTGAGCTCATCTGACATGTAATGGAGCACAATGCTT
GTGTCTGGTACATAGTCAATGTCTTTAATTTCTCTGATCAACCAACT----TTTGCATAGATCTCTTGTGCTTGCGGATG
GCCGGTGTCACCAGCTCCGAACTCGAGAATG--GTTTCCAACATCCATCCAACTCAAGCCAGTTTCTTTACTCAAGTTCT
TTTGTTTCATCAGACTCCTTATTCTTGCAACTTCATCCCATAAACCAGCATGGGCATACAACTTTGAG
>chr3A_770
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---------------------------------------------------------GGAGTAAATAATTACTT-GAGAC
CAAGGAAATTAGAGAGTTATCTTAAAAAAAAAGAATTAAAGAATTGTCTTGAGAGCCAAGGAAGTACCGAGCTCTGCGAT
GGT-----------------------------------------------------------------------------
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-------TAACAAATCCTACGCCGTGCCCAGCTCTGCGAGGTCCCCCAGATCCCATCATTTCGCCCCCTCCCGTCAAGCG
GCGGCTAGCACCGAAACGCCGGACTTGCCGTGCCGTCCAATCCATGGCAGCCGCCTCCGCCTCCGCCGGAAACGCGGGCG
AGCCGCGGCTCGTCGACCGCTGCATCGACGCAGCGGCGCGGTGCCGAGCCTCCGTGGAGGCCTGGCGCCGCCAACGCCGG
TCCCTCGAGCGCCTGCCCGGGCAGGTGGCCGACGCGCTCCTCAGCCGCCTCGCCGCTCGCCGCCTCCTTTTCCCCTCCCT
CCTCGAGTAAGCGCCCCGCCTTCTCCGCCCAGAACATGCCCGAT-TTTTTCTCTGTTTTCTCTACCATGAGACGGTTCTG
CGCTGTTCCGTTTCTGGATCTGTTGCTTCCTGCCGCGTGTGGATGAATCGTGCTTGTGTGCGCAGGGTTTTCCAGCACTC
GGTGCAGGAGGTCGACTTCAGCGGCAACATCGCCGTAGATGCGGAGTGGCTGGCTTACCTCGGCTCGTTCCGGTACCTGG
GCATCCTCAAGCTGGCGGACTGCAAGAAGGTCGACCACGCCGCGATCTGGCCGCTCTCCGGTACAGCTCTCAAGCTTATT
TCTATAATGATGAAACCATGATTTCCAGTACATAGTTTCGAAACATGACTTGGTTTGATTGAAGAAATTAATTAATTGCC
TTACTAGTTTTTAATAAAGTTGCTCTGATTATTCAGGCATGAGTATGCTAAAAGAATTGGACTTGTCGAGATGCTCTAGG
ATAACTGATGCCGGCATCAAACATATAGTCTCCATTGATAGTCTGGAGAAGCTACACTTATCTGAGACTGGATTGACTGA
CAATGGGGTGATGCTCATCTCAGCACTAAAAGGTTTAAATTTGCTAGATTTGGGAGGGATTCATATGACCGACAAAGCAT
TACGGTCATTACAGGTACATA--CTCATGATGCGCGACCATTTTTTTCC--ATTAAAGGATGCA----------------
--------GTCTCATCTAGTAATGTTTATATTTTCTGATAGCATA--TATACATATCACTACGCCACTGCTTGCTCATTT
CTTTTTGAGTGACGCGTAATGGAGTATTAATTTATAGTTTTTACTGTTCCAGGTATTGACTCAACTTGAGCACCTTGATA
TATGGGGTAGTGAAATTACTGATGAGGGAGCTTCCGTCCTTAAGGCGTTTACAAGATTGAGGTTCTTAAATGTTTCTTGG
ACACATGTGACTCGTTTGCCACCCCTTCCAAACATGAAATATCTTAATATGAGCAACTGTACAATTTATTCCATTCGTGG
CGGTGATTCTGAAGTTCATATTCCTTTGCAAAAGTTTACGGCCTCTGCAGCCTCATTTGGTGACATTGATGAGGTGTTCT
CTAGCATCGTAGCAAGCTCATTTTCATTCTTGGACATGTCTGGTTGTTCTTTAAGCAACTTATATGGCCTGCAAAAGATG
AAAAGTCTAGAGCATTTGGACCTTAGCTTGAGCAGAGTAACTGATGATGCAATCGAGTATGTTGCAAATATTGGAATGAA
GCTGAGATATCTAAGCCTCAAGAATACTGGAATAACCTCTCAGGCACCATGTATTTTGGCAGGAACAGTTCCAAACCTGG
CTTCACTGTCTTTAGCTTATACAAAAGTTGATGATTCTGCTCTAGTATATATCAGCATGATGCCTTCATTGAGAGTGATA
GATCTAAGTCATACAAGTATCAAAGGTTGCTTTTTTGCTTTGCATTTATTTCTTTTTCTTGATTAAATAAACACGCTTTC
TCTTTGAGAAACTGAATTCTATCATATTACAGGGTTCACTCGTGCTGAAGCAAACTCAGAGAAAGTACTGTCTCTGCCTC
TACTTGAGCATCTCATATATCTTGAAAGTCTAAATCTGGAGGATACACCACTGTCAGATGAAGTTATACCTCCCATA---
-GCATCCTTTAGAGCACTAAAATATTTGTACCTGAAAAGTGATTTCTTG--TCTGACCCCGCATTGCATGCCCTGTCTTC
TGCCTCAAATTTGATACATCTTGGATTTTGTGGGAGTATAT-----TATCAAACTCTGGGCTTCTGCAATTTGTGCCCCC
TGCCCAGCT-ACATGTGTTGGATTTAAGTGGCTGCTGGGTCTTAACAGGGTATGCCATCTCAT-----CATTTCGTAGC-
--CATCACCCGGTGATAGAGGTGAGACATGAACTAATTCAGGAACTTCAACCAAGCCACATCGGTACTTCACAAGTTCAC
AAGTCTAGGCATCTTCCACGGGCAAAAACTAAAGTTGTTAATAGCTCGGCTGATT------------CTAGCAGGCA---
TTCTGGTATCTTCTTCGTAGGTAAGGGTGATGTAACTTCAATCTGCTTTA----------------------------TT
CTCTTTCAGTTAGAAGGAATATAATCTGAGTGACCTATGTGCTTTATAACGTATGATAACAAATTTGCCT----TTTGAT
T-----TAAACAGATCAAAGGATAAAATACAGCAGGGAGAAAATGCTGGAGAT-CCAAGATCTTACCCAATCGAATTCAG
TGTTACATGATGTGCAGCTTCCACCAGAGCTGCGAAGGATGGAATGAGACAAGTTCTGGTTTACTTTTGTCACGCACTTC
AGTTTCGTCATTTGATTAAATAGTGCATCTATTTTCTTGGGGGATGTCGCAATTTTGAATTAGCTAAAGACAGTTTGTCA
TTTGATTAAATAGTGCTTCTCTCACTGTATACTGCCAACTGTCTGA--GTTGTAACATGAAGAAT----TTGTTT-G--T
ATGATTTATATGCCTTTGTGATCCTGAAGTATGTATTCAGTCAGTTCATCTGTTTTAACAGAGGGCATTTGTGTTATGTT
GT-CAGATGTGA--CCATGGGTTCAAATGGTTGATGCTTCCTGATGTAGGATGATTTTTGTCGTAAACAAGTGTATGTAT
TTGCCATTTGATCATGATCAGTCTTATTACCCATGAGCAATACATGGTAAACGAAGGAGAGTCCATGAGGTGCAGCATTT
TCCATGTAAACATTGTTC-----------CTAAATGGATCATATTGTTCCTTCCTGGGTGGAAAATAACCAAGTTCATTC
TCCCTGCTGGGAATTAA-TAGACGTATTTGTTCTTCTAACCAGCTAT-------GGACTTCTGGAAGTTGCAAGTAT-TG
CACAAAAA-GATAAGAAACAAGCTGCTGGTGAAA-TTGAATTGTTCATATAACTATACACAG-CTA--------------
--TAACTGTATGATAAACTAATTGTAGTACAGAAACAATTCCCATAAAAAAAACTATACAAAAACAATTATAGAAATCTG
CAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ACACACG
GAGATTCTTAAAGATCCTTGTTGGTTTTGTTGGGTGATGTACTGTAATTTTTGTTGGGTGATGTACTGTAAACAAACCAA
ATGCCACAGCAATCTTCTCGCTGTGCTGAAGCAGACA---CTCCTTGAGCTCATCTGACATGTAATGGAGCACAATGCTT
GTGTCTAGTACATAGTCAATGTCTTTAATTTCTCTGATCAACCAACT----ATTGCATAGATCTCTTGTGCTTGTGGATG
GCCGGTGTCACCAGCTCCGAACTCGACAATG--ATTTCCAACATCCATCCAACTCAAGCCAGTTTCT-----------CT
TTTGCTTCATCAGACTCCTTATTCTTGCAACTTCATCCCATAAACCAGCATGGGCATACAAGTTTGAG
>chr3D_2759
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-----------------------------------------------------------AGAAAATAATGTCTATGCCTC
CACTTCAGCATCTCATCTATCTTGTAAGTCTAAATCTGGAGGACGCACCACTGTCAGATGAAGTCGTACCTCCCCTGGCT
GGCATCCTTTAGAGCACTAAAACATTTGTACCTGAAAGGTGATTTTTTTTTTCTGATCCTGCATTGCACA--------TC
CCCCTCAAATTTGACACATCTCGGTTTTTGTCGGAATGTACTACAGTATCAAAGTCTGGGCTTCTGCAATTTGTGCCCCC
TGCCCAGCTAACATGTGTTGGGTTTAAATGGTGGCTGGATCTTAACAGGAGATGCCATCTCAA-----CATTTCATAGGC
ATCATCACCTGGTGATAGAGGTGAGACAT--ACTAATGCAGGAACTTCAACCAAATCGTGGTGGTACTTCACAAGTTTAC
AAGTCTAGTAAACTTCTATAGGCAAAAACACAAGCTGTTAATAGCTTGGCTGACT------------CTAGCAGG-----
-----------------------------CTGTAATGTCACTCTGCTTTATTCTCTTTTTTTTTGACGCGTTGCTTTATT
CTCTTTCAGTTAGAAGGAATATAATCTCAGTGAGCTATGTG--TTTTAACGTATGACAGTAAGTTTGCCT----TTTTGA
TTTAAATAAATAGATGAAAGGATAAAATGCAGCAGGGATGAATCGATGGAGATCCCAAGACCTTAACCAATCGAATTACG
TGTTACATGGTTTGCGGCTTCCACCAGAACTGCGGAGGATGGAACGAGACAAGTTCTGGTTTACTTTTCTCATG------
--------------------------------------------------------------------------------
------------------------------------------------------ATCTGAAGAATTAGCTTGTAC-G--T
ATGATCTATATACTCTTGTGATCCTGAAGTATGTATCCAGCCAGCTTGTCTGTTTTAACAGAAGGCTTTTGTGTTATGTT
GT-CAGATGTGA--CCATGGGTTCAAATGTTTGATGCTTTCGGATCTAGGATGATTTTTGTCTTCGACATCTGTGTGTAT
TTGCCA-TTTGATCACCCTCAACCTT------ACGAGCAGCACATGGTAACCAAAGGAGAGTCCATGTGGTGCAGCATTT
TCCATATAAACACTGTTCATCAATGTGGACTAAATGGATCATTTTGTTCCTTCCTGGGTGGAAAATAAC-----------
--------------------------------------------------------------------------------
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>chr5A_2805
--------------------------------------------------------------------------------
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-------------------------AAGTCTAGTTCTGGAGGATGCACCACTGTCAGATGAAGCTATACCTCCCTTGGCT
GGCATCCTCTAGAGCAGTAACATATCTGTACCTAAAAAGTGATTTCTTG--TCTGACCCCGCATTGCATGTCCCGTGTTC
CGCCTCAAATTTGACACATCTTGTTTTTTGTGGG----------------------------------ATTTGTGCCCCC
TGCCCAGCT-ACATGTGTTGGATTTAAGTGGCTGCTGGATCTTAACAGGAGATGCCATCTCAATTTAACATTTCATAGG-
--CATCACCTTGTGACAGGGGTGAGACATGAACTAATGCAGGAACTTCAACCAAATCGTGGTGGTACTTCA--------C
AAGTCTACGATACTTCCATGGGCAAAAACAAAAGCTGTAAATGGTTTGTCTGACTGACT--------CTAGCAGGCATCC
TTCTAGTATCTTCTTCGTAGGTAAGGATGATGTGACTTCACTCTGCTTTA----------------------------TT
TTCTTCCAGTCAGAAGGAGTATAATCTCAGTGAGCTAAGT------------------------TTGCCT----TTTGAT
T-----TAAATAGATGAAAGGATAAGATACAGCAGGGACGAATTAATGGAGATCCAAGAC---------------TTCAG
CGTTACATGGTGTGCGGCTTCCACCAGAACTGCGAAGGATGGAATGAAACAAGTTCTGGTTTACTTTTCTCGTGCACTTC
AGTCTGGGCATTTGATTAAATAGTGCAGCTATTTTGAC------------------------------------------
-----------------TCTCTCACTGCACACTGCAAACTGCCTGACAGTTGTGATATGAAGAATTAGCTTGTACAGTAT
ATGATCCATATACTCTTGTGATACTGAAGTATGTATTCAGTCAGCTTGTCTGTTTTAACAGAAGGCTTTTGTATTATGTT
GT-CAGATGTGAGTCCATGGGTTCAAACGGTTGATGCTTCCAGATCTAGGATGATTTTGGTCTTCACCATGTGTATGTAT
TTGCCATTTTGATCACCCTCAACCTT------ATGAGCAGCACATGGTAACCCAAGGAGAGTCCATGAGGTGCAGCATTT
TCCATGTAAACATTGTTCCTGGATGTGGACTAAATGGATCATTTTGTTCCTTCCTGAGTGGAAAACAACTAAGTTCATTC
CCCCTACTGGGAATTAAATGGATGTATTTATTCTTTTAACCAGCTATCAGCTAAGGACTTCCAGAAGTAATCCAAGTATG
CCCAAAAA-GATAAGAAACATGCTGCTAGTCAAGTTTGTATTGTTCATATAACTGTACATACTCTATAACTTCACGATAG
ACTAACT-------------------ATACAGAATCAACATCTAATCCTTTGCAAAATCAATGGTTTAGAAAAGCTAAAA
AAATGAACATCAGTCAGTATTTACCAGCAAAAAGGCCATGCTGAGCAAGAAACCTCTAGAGTTTCTTAAGCAAAAAACCA
AACCTGCTCATCAACCGCCATTCACAGCTCACCAGTACTCCCCGCATGAGCATTTCCCATCTTTCATCCTATGGAACCTG
TTGCTATCTCTCAATATTACCTCCCTTCCAGTCGATTTAGAGATATACTTGATTGCAGAATGGCAATCTGCGCACACACG
GAGATTCTTAAAGATCCTTATTGGTTTTGTTGGCGATG----TA-----------------------GTAATCAAACCAA
ATGCCACAGCAATCTTCTCGCTGTGCTGGAGCAGACACTCCTCCTTGAGCTCATCCGACATGTCATGGAACACGATGCTT
GTGTCTGGTACGTAGCCAATGTCTTTAATTTCTCTGATCAGCACAGCCAACTTTGCATAGATCTCTTGTGCTTGCGGATG
GCCGGTGTCACCAGCTCTGAACTCGTGAATGGTATTTCCAACATGCATCCAACTCAAGCCAGTTTCTTTACTCAAGTTCT
TGTGTCTCATCAGACTCCTTATTCTTGCAACTTCGTCCCATAAACCACCATGGGCATACAAGTTTGAG
>chr5D_2997
ATTTGTGC------------------------------------------------------------------------
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---------------------------------------------------------------------------CCCCC
TGCCCAGCT-ACATGTGTTGGATTTAAGTGGCTGCTGGATCTTAACAGGAGATGCCATCTCAA-----CATTTCGTAGG-
--CATCACCTGGTGATAGAGGTGAGACATGAACTAATGCAGGAACTTGAACCAAATCGTGGTGGTACTTCACAAGTTGAC
AAGTCTAGGAAACTTCCATGGGCAAAACCAAAAGCTGTTAATGGCTTGTCTGACTGACTCTAGCAGCCTAGCAGGCATCC
TTCTAGTATCTTCTTCGT-GGTAAGGATGCTGTGACTTCACACTGCTTTA----------------------------TT
CTCTTTCAGTCAGAAGGAGTATAATCTCAGTGAGCTAAGT------------------------TTGCCTTTTGTTTGAT
T-----TAAATAGATGAAAGGATAAAATACAGCAGGGACGAATTGATGGAGATCCAAGAC---------------TTCAG
TGTTACATGGTGTGTGGCTTCCACCAGAACTGCGAAGGATGGAACGAGACAAGTTATGGTTTACTTTTCTCGTGCACTTC
AGCCTGGGCATTTGATTAGGTAGTGCAGCTATTTTGA-------------------------------------------
------------------CTCTCACTGCATACTGCAAACTGCCTGACAGTGGTGATATGAAGAATTAGCTTGTACAG--T
ATGATCCATATACTCTTGTGATACTGAAGTATGTATTCAGTCAGCTTGTCTGTTTTAACAGAAGGCTTTTGTATTATGTT
GT-CAGATGTGA--CCATGGGTTCAAACGGTTGATGCTTCCTGATCTAGGATGATTTTTGTCTTCACCATGTGTATGTAT
TTGCCATTTTGATCACCCTCAACCTT------ATGAGCAGCACATGGTAACCCAAGGAGAGTCCATGAGATGCAGCATTT
TCCATGTAAACATTGTTCCTGGATGTGTACTAAATGGGTCAATTTGTTCCTTCCTGGGTGGAAAACAACTAAGTTCACTC
CCCCTACTGGGAATTAAATGGATGTATTTATTCTTCTAACCAGCTAGCAGCTAAGGACTTCCGGAAGTAATCCAAGTATG
CCCCAAAA-GATAAGAAACATGCTGCTAGTCAAGTTTGTATTGTTCATGTAACTGTACATACTCTATAACTTTATGGTAG
ACTGACT-------------------ATACAGAAACAACATCTAATCCTTTGCAAAATCAATGGTTTAGAAAAGCTAAAA
AAATGAACATCAGTCAGTATTTACCAGCAAAAAGGCCACGCTGAGCAAGAAATCTCTAGGGTTTCTTAAGCAAAAAACCA
AACCGGCTCATCAATCGCCATTCACAGCTCACCAGTACTCCCTGCATGAGCATTTCCCATCTTTCATCCTATGGAACCTG
TTGCTATCTCTCAATATTACCTCCCTTCCAGTGGATTTAGAGATATACTTGATTGCAGAATGGCAATCTGCGCACACACG
GAGATTCTTAAAGATCCTTATTGGTTTTGTTGGCGATG----TA-----------------------GTAATCAAACCAA
ATGCCACAGCAATCTTCTCGCTGTGCTGGAGCAGACACTCCTCCTTGAGCTCATCCGACATGTCATGGAGCACGATGCTT
GTGTCTGGTACGTAGCCAATGTCTTTAATTTCTCTGATCAACGCAGACAACTTTGCATAGATCTCTTGTGCTTGCGGATG
GCCGGTGTCACCAGCTCTGAACTCGTGAATTGTGTTTCCAACATGCATCCAACTCAAGCCAGTTTCTTTACTCAAGTTCT
TGTGTCTCATCAGACTCCTTATTCTTGCAACTTCATCCCATAAACCACCATGGGCATACAAGTTTGAG
>SNPs
SSS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S----S----------S-------
S----------------S-------S----------------------SS------------------------------
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---S--S-------------------------------------------------------------------------
---------------S----S-----------------------------------------------------------
-------------------------------------------------S------------------------------
----------------------------------------------------------------------S---------
-----------------------------------------------------------------------S--------
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------------------------------------------------------------------------S-------
---------------------------------------------------------------------S-S--SS----
---------------------------------------------------S----------------------------
------SSS-----------------------------------------------------S-----------------
--------------------------------------------------------------------------------
------S-----------S-----------------------------------------------------------S-
-S-------------------SS----------------------S-----------------------------S-S--
-----------------S-----S---------------------SS---------------------------------
--------S-----------------------------------------------------------------------
----------------------------------SS--------------------------------------------
---------------S-S--------------------------------------------------------------
-------------------------------------------------------S---S----S-------S-------
----------------------------------S---------------------------------------------
--------------------------------------------S-----------------------------------
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----------------------------------------S---------------------------------------
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-----------S--------S-----------------------------------------------------------
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----------------S-S-------------------------------------------------------------
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-----------------------------------S--------------------------S-----------------
-----------------S--------------------------------------------------------------
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-------------------------------------------S-----S------------------------------
--S-----------------------------------------------------------------------------
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--------------------------------SS-S--------------------------------------------
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------------------------------------S----------------------------------S-------S
------------------------------------------------------------S----------------S--
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-----------------------------------S--------------------S-------------------S---
-----------------S-------------------------------------------------S------------
---------------S----------------------------------------------------
>forward_612
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--------------------------------CCGTCGGATTCTCAGATCGG----------------------------
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>reverse_2206
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---------------------------------------------CCCCCATTAACGGATGCAGA---------------
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>forward_702
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------------------------------------------ACAAGCCCCATATGCCATCC------------------
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>reverse_2633
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------------------------------------------------------------------------AGTGTTCT
CTAGCATCGTAGCA------------------------------------------------------------------
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>forward_2625
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---------------------------------------------TGCAGCCTCAATTGTTGACG---------------
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>reverse_4163
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--TCAGATGTGACCATGGGTTCA---------------------------------------------------------
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--------------------------------------------------------------------
