>input_sequence_31960
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----------ATATGCGTGCGTGCCAGCGCCAGT----GTGAAATCACATTAGTAGTCACTAGCTCGCGAGCGCCGGCCG
GAGATGATGTCGA------CGAT------------GGCGGAGCTGGCATGGCGCTTTGCGGCCGCACACGTCCTGCTGTT
GCCCGCGGC---CGTCGGCGGCATCGCCTACCTCCTCCTCCGCGCTCTACGTGCTTCACAACTCCGGCAGGATTGCAGGA
GCCCGCCGCCGGGAGGCATCGGCGGCTGGTGCCGGGGCGCGGTCGGGGCGGAGACGCTGTCCTTCCTGGCCGACAACAGC
AGCGGCAGGGGCTTCTACCACTTCGTCCACGCCCGCGCGCTCCGGTACGGCGCCTGCTTCCGCACCGTGCTCTTCGGCCG
CACCCACGTCTTCCTCCTCTCCTCCCGCGCGCGCGCCGCCGCCGCCAGCCTCCTGGCCGCCGACCCGCCCCACTTCGCCA
AGCGCTACGTGCGCACCGTCGCCGACCTGCTCGGCGAGCACAGCCTCCTCTGCACCTCCCACGGCGCCCACCGCCGCATG
CGCCGCGCCGTCGCGGGCCTCTTCGCCTCCGCGCCCACGGCCGCCTTCGCCGCCGCCTTCGACCGCCTGATCACCGCCCG
GCTGCTGGCCGACGGCTGCAAGGGCCAGGCCGTCGTGCTGGACGCCGCGCTCGACGTCACCTTCAGGGCCATCTGCGAGA
TGCTCATCGGGCCACGGGACGACACGCGCGAGCTGGAGCAGCTGCAGAGCGACGTCATGGACGTAACGCAAGCCATGCTC
GCGCTGCCAATCAGGCTGCCTCGAACAAGGTTCTACAGAGGCCTACAGGTACCCTTTTTTT-----CTAATGTTTTTACA
GTTTTGCTTTTTTCTTTTTACTTTTTTCGCCACTCGAAACCATCACTGTCCGATCTAGATTGACTAG--------ATACC
AAGATTCGCGCAAGTATACATGCTTTTAATTACTACTGTACATCAC-AAGGGAACGATTTCTAGCTAGATTCTTTGTATC
AAATTGTTT-TTGATGTCAGGCAAGGAAGAGGATCATGGATGCACTGAGGCAAGAAATATCCACGAGGCGAGAAAATGGC
CTGAAACTAGATCACCGGGACGACTTTCTGCAGACCCTTCTTCTCAAGAGCCATATGGATTCACCTGAAGAAGCGCTCAC
GGATGAACAGATTCTGGATAACATTTTGACACTCATAATTGCAGGTATACATGTATGCAAGTCCTAATTTAGTTCTTAAC
TACAAAGACTTTAAGTTATTTTAGCTACAAACAAAGC---------CTTGTTTGTAACTGAGTGCAGGGCAAGTGACAAC
AGCAACAGCAATTACCTGGATGGTCAAGTACCTGGGCGACAACACAGATCTCCAAGAGAAACTAAGAGTGAGCAAGCTGC
ATATTTG----------------------------------------GCCCATGTATGAAGAATAAATTACTTCATTTCT
TGATTGCAATTCTCTCTGTATACGTATATGCAGTCAGTTCAGCTGGATCTGGCATCCAAGCACAATGATGCACCTCTTAC
CCTACAACATCTGAACACCATGGACTACGCATACAAGACGGTCAAAGAATCCTTGAGGATGGCCACCATAGTTTCTTGGT
TTCCAAGGGTGGCACTCAAGGACTGCCAGGTTGCAGGTAACTAAACCTCGCTGATTTATTTTCTTTCTCATTGCTGGAAG
CTACC-----ATTAACAGAAACAAGTAACAACAGGATTCCACATTAAGAAGGACTGGCTCGTAAATGTCGATGCGAGATC
CATACACTATGATCCAACCATCTATGACAGTCCGACAGTGTTTGATCCTTCCAGGTTCAATGTATGTATTGTTGTAAGCC
TGAAGAAATTATACTCCCTCCGATCCATAATACTTGTCGTTCAAACGGATGTATCTAGACGTATTTCAGTGCTAGATACA
TCATAGACGTATTTCAGTGCTAGATACATCGGTTTGAGCGACAACTAATATGAATCGGAGGGAGAGGGAGTACTAGATTT
ATATAGTTTTGTGATATAGACAGATTGATGGTATTTCTATGGACAGGATGATATGAAGCCATACAGCTTCTTGGCATTTG
GAGCAGGCAGCAGAACATGCCTGGGGATGAACCTTGCCAAGATTATGATGCTAATATTCCTTCATCGCCTTGTCACAAAT
TTCAGGTTTCAACTCTAAAGCCAAGTTTCTTTATTTGAT--------GCAAACAGCTA-GAGCTGGAGAATAAAACTAAA
AAATTCTGATGTTTTCAGATGGGAAATGGCAGACCACGATACAAGCCTTGAGAAATGGGCAATGTTTCCGAGGCTAAAGA
ATGGCTGCCCAATTCAGCTCACGCCGATACGCAAGGACAAGATGCACTGA----TGATGCACATCTAGTAAATCTGTCAG
GATATGCATCCAGTTATGAAGCTATGTGATTTTCCTTGGTTGTTACATACTCCAACAGATGAAACAAATTCTTAATTCCT
TCTTTTGGATGAGCCAAGATCAAGCCTAGCTAGCTGATAATTTC-AAAATAAA---------------------------
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----------------
>chr1B_1_TraesCS1B01G211700
TCAGATATCCTTTCAGATTTTTCAAAGTTCACTTAATTTTAACTAATTTTGATTAAATTTAATTTTGTTTTGAA-TCGTT
TTTATCTGGCTCGAAATTCCGGGGTTTAAAGTATACCCACCAAAAT----ATAATCAAAAAATCTATTGAAATTACTCTG
CATGATAGCTCATTAATCAGATGAACCTTGAATCTGGTCATCATCAATCAAATATACTCCCTCCGTTCCTAAACATAAGA
CCTTTTAGATATTTCAATTTCTTATATTTAGGAACTGAGGGAGTAGAAAAGAGAGCAGTAATCT----------------
--------------------------------------------------------------------------------
-----------CCTCCGTGTCTACTTTTCTTCGTCAGCTCCAGTACACTAGTAGCTGCTCTCTCTCTCTATCTATCTA--
--TCTCTTTGCGGGAAAGGAACTTTCATTAATCAAACCAAGTGGTTACTTTCACCAGTAGCTACTCTAGCA---AAGGTA
GGTTAATCACACGAATGCGATGGTGAACACGAATGATATGATGATGCATGATCGAAGGCCATATGCGGCCCATAGATATG
CGGGCGACAAGTCATCACTGGTTAAGTTAGTGGGAAATTGGCTGGGTTCCTCTTCCTCGAGATACTCCTCGACTAGACCA
GAATATGCGGCCGTTGAGTCAATGGGAAAACACACAACTCAACTAATAAAGCTGACTGAACTTTGGTTCGTGCTGGTTGG
TCATGTCTGCCTGCCTGCCTGCCTGCCCTGGAAGCTAAGATCATGACGACACACAGCACTCGCCATGCA----------A
ATGGAATGAAACCCGGCATTTCGTCAACTACCC-ATTTGCATGAACAGCGAGATGATGATACTCATCTTGAAACGCGAGC
GAGGTGAGGCCGAGGACGGCGGGAAAAGATGCGATCGATGCAACTAGCGCAAGTGCGGTTGGAATCCATCAGATCAGGTA
TCCTTCCAGGATCCATCGCCATGATTGATCTGGAGAATGGTTGCACCCGACCGACTCGGTCATATATGGCGCGCGTGCAT
GCTTGCTTAGATATGCGTGCGTGCCAGCGCCAGT----GTGAAATCACATTAGTAGTCACTAGCTCGCGAGCGCCGGCCG
GAGATGATGTCGA------CGAT------------GGCGGAGCTGGCATGGCGCTTTGCGGCCGCACACGTCCTGCTGTT
GCCCGCGGC---CGTCGGCGGCATCGCCTACCTCCTCCTCCGCGCTCTACGTGCTTCACAACTCCGGCAGGATTGCAGGA
GCCCGCCGCCGGGAGGCATCGGCGGCTGGTGCCGGGGCGCGGTCGGGGCGGAGACGCTGTCCTTCCTGGCCGACAACAGC
AGCGGCAGGGGCTTCTACCACTTCGTCCACGCCCGCGCGCTCCGGTACGGCGCCTGCTTCCGCACCGTGCTCTTCGGCCG
CACCCACGTCTTCCTCCTCTCCTCCCGCGCGCGCGCCGCCGCCGCCAGCCTCCTGGCCGCCGACCCGCCCCACTTCGCCA
AGCGCTACGTGCGCACCGTCGCCGACCTGCTCGGCGAGCACAGCCTCCTCTGCACCTCCCACGGCGCCCACCGCCGCATG
CGCCGCGCCGTCGCGGGCCTCTTCGCCTCCGCGCCCACGGCCGCCTTCGCCGCCGCCTTCGACCGCCTGATCACCGCCCG
GCTGCTGGCCGACGGCTGCAAGGGCCAGGCCGTCGTGCTGGACGCCGCGCTCGACGTCACCTTCAGGGCCATCTGCGAGA
TGCTCATCGGGCCACGGGACGACACGCGCGAGCTGGAGCAGCTGCAGAGCGACGTCATGGACGTAACGCAAGCCATGCTC
GCGCTGCCAATCAGGCTGCCTCGAACAAGGTTCTACAGAGGCCTACAGGTACCCTTTTTTT-----CTAATGTTTTTACA
GTTTTGCTTTTTTCTTTTTACTTTTTTCGCCACTCGAAACCATCACTGTCCGATCTAGATTGACTAG--------ATACC
AAGATTCGCGCAAGTATACATGCTTTTAATTACTACTGTACATCAC-AAGGGAACGATTTCTAGCTAGATTCTTTGTATC
AAATTGTTT-TTGATGTCAGGCAAGGAAGAGGATCATGGATGCACTGAGGCAAGAAATATCCACGAGGCGAGAAAATGGC
CTGAAACTAGATCACCGGGACGACTTTCTGCAGACCCTTCTTCTCAAGAGCCATATGGATTCACCTGAAGAAGCGCTCAC
GGATGAACAGATTCTGGATAACATTTTGACACTCATAATTGCAGGTATACATGTATGCAAGTCCTAATTTAGTTCTTAAC
TACAAAGACTTTAAGTTATTTTAGCTACAAACAAAGC---------CTTGTTTGTAACTGAGTGCAGGGCAAGTGACAAC
AGCAACAGCAATTACCTGGATGGTCAAGTACCTGGGCGACAACACAGATCTCCAAGAGAAACTAAGAGTGAGCAAGCTGC
ATATTTG----------------------------------------GCCCATGTATGAAGAATAAATTACTTCATTTCT
TGATTGCAATTCTCTCTGTATACGTATATGCAGTCAGTTCAGCTGGATCTGGCATCCAAGCACAATGATGCACCTCTTAC
CCTACAACATCTGAACACCATGGACTACGCATACAAGACGGTCAAAGAATCCTTGAGGATGGCCACCATAGTTTCTTGGT
TTCCAAGGGTGGCACTCAAGGACTGCCAGGTTGCAGGTAACTAAACCTCGCTGATTTATTTTCTTTCTCATTGCTGGAAG
CTACC-----ATTAACAGAAACAAGTAACAACAGGATTCCACATTAAGAAGGACTGGCTCGTAAATGTCGATGCGAGATC
CATACACTATGATCCAACCATCTATGACAGTCCGACAGTGTTTGATCCTTCCAGGTTCAATGTATGTATTGTTGTAAGCC
TGAAGAAATTATACTCCCTCCGATCCATAATACTTGTCGTTCAAACGGATGTATCTAGACGTATTTCAGTGCTAGATACA
TCATAGACGTATTTCAGTGCTAGATACATCGGTTTGAGCGACAACTAATATGAATCGGAGGGAGAGGGAGTACTAGATTT
ATATAGTTTTGTGATATAGACAGATTGATGGTATTTCTATGGACAGGATGATATGAAGCCATACAGCTTCTTGGCATTTG
GAGCAGGCAGCAGAACATGCCTGGGGATGAACCTTGCCAAGATTATGATGCTAATATTCCTTCATCGCCTTGTCACAAAT
TTCAGGTTTCAACTCTAAAGCCAAGTTTCTTTATTTGAT--------GCAAACAGCTA-GAGCTGGAGAATAAAACTAAA
AAATTCTGATGTTTTCAGATGGGAAATGGCAGACCACGATACAAGCCTTGAGAAATGGGCAATGTTTCCGAGGCTAAAGA
ATGGCTGCCCAATTCAGCTCACGCCGATACGCAAGGACAAGATGCACTGA----TGATGCACATCTAGTAAATCTGTCAG
GATATGCATCCAGTTATGAAGCTATGTGATTTTCCTTGGTTGTTACATACTCCAACAGATGAAACAAATTCTTAATTCCT
TCTTTTGGATGAGCCAAGATCAAGCCTAGCTAGCTGATAATTTCAAAATAAAGTCAAATAAAAGAAAGGGACAATGAAGT
GCTGCTGGTCTTTCTGATATTTTTATTGACATGTATGCATGCAG-ATGATAACTAGGTGCAAGCAGGGCAAACCCTCAGA
AATTTCTTT-CAAAGCTGAGATGAATTAAAACCAACAGATCGTCAAAGTCTCAGCCAATGCAGATATGGATCGGACTGAA
TCATCAATCAATCTGCATACAAGAAATGAA--CTGACCAAAGCTGGATTCAATCCAGCATAGTTTCCCTCCCCTATTTAA
AAAAGGGTCGATGAAGAATGTGTTTGGAATATGCCCAAGATGCTACCCATGTTCAATGATTTATTTAGTAATGTACTTGA
ACAATCATGGGCAAGTATGTGACTTGCTTATGAAAGTCCATATTCGTCTGTCTAATAAATATTCTAAATAACGACTAAAG
AATGAATATTCCAAATAAGTCCCTAGTCTGAACTCATATGACGATTCAAATTAATTGACCAGCATACATATTGATTAATG
ATCATGTTTCAGAGGTCATTGAAATACAGATGTCTAACTGTTATGGTGCTGCTAGAAGGAGGGCGCGAGAGGGCCAGCCG
GGGGCCTTTCTGCCCACGGCCAGGCAAGAGGGAAGGGATTTCCTTCTTAATTCTTGCTTGATTAGATTGATACATCTCCT
CTCTTTATATAGAGAGGTTTACTTGACTCCCAAGCAAGGCTTACTTGACCCTTAAGCAAGCGACCCTTATCTCTAATTAA
CTCTAAGACTAATGGGTCCATTAAGCCCATTACGTACTCTAACACTACACCCCACCTAAACATGCAGCTTGTCCTCGAGC
TGCAACCTAACCAACTTATAACCATGACTCGACGCAATACAAACCTAACACCTAAAAACAAGCCTTTTACATCTCGGCTT
ATTTTATTATTCTCAACCTAAAATGGACTGGGACGCTTTATTTTGGACCCCTTAACAAAAAGTGGACACCATCCGCACGT
CGGACGTGCACGTGTA
>chr1D_1
TCAGATATCCTTTCAGATTTTTCAAAGTTCACTTAATTTTAACTAATTTTGATTAAATATAATTTTGTTTTGAATTCGTT
TTTATCTGGCTCGAAATTCTGGGGTTTAAAGTATATCCACCAAAAT----ATAATCAAAAAATCTATTGAAATTACTATG
CATGATAGCTCATTAATCAGATGAACCTTGAATCTGATCATCATCAATCAAATATACTCCCTCTGTTCCTAAATATAAGA
CCTTTTAGAGATTTCAGTGTCTTATATTCAGGAACGGAGGGAGTAGAAAAGCGAGCAGTAGTCT----------------
--------------------------------------------------------------------------------
-----------CCTCCGTGTCTACTTTTCTTCGTC-----CAGTACACTAGTAGCTACTCTCTCTCTCTATATATATCTC
TCTCTCTTTGCGGGAAAGGAACTTTCATTAATCAAACCAAGTGGTTACTTTCACGAGTAGCTACTCTAGCA---AAGGTA
GGTTAATCACACGAATGCGATGATGAACACGAATGATATGATGATGCATGATCGAAGGCCATATGGGGCCCATAGATATG
CGGGCGACAAGTCATCACTGGTTAAGTGAGTGGGAAATTGGCTGGGTTCCTCTTCCTCGAGATACTCCTCGACAAGACCA
GAATATGCGGCCGTTCAGTCAATGGGAAAACAC-----TCAACTAATAAAGCAGACTGAATTTTGGTTCGTGCGGGTTGG
TCATATCTGCGTGCCTGCCCTGGAG--CTGGAAGCTAAGATCATGACGACACACAGCACTCGCCATGCA----------A
ATGGAATGAAATCCGGCATCTCGTCAACGTACCTGCTTGCATGAACAGCGAGACGATGATGCTCATCTTGAAACGCAAGC
GAGG-GAGGCAGAGGACGGCGGGAAAAGAAAGATGCAATGCAACTAGCGCAAGTGCGGTTGGAATCCATCAGATCAGGTA
TCCTTCCAGGATCCATCGCCATGATTGATCTGGGGAATGGTTGCACCCGACCGACTCGCTCATATATCGCGCGCGTGCAT
GCTTGCTTAGATATGCGTGCGTGCCAGTGCCAGCGCCAGTGAAACCACATTA---GTCACTAGCTCGC------CGGCCG
GAGATGATGTCGATGTCGACGAT------------GGTGGAGCTGGCATGGCGCTTCGCGGCCGCACACGTCCTGCTGCT
GCCCGCGGC---CGTTGGCGGCGTCGCCTACCTCCTCCTCCGCGCCCTACGTGCCTCCCAACTCCGGCAGGAAGGCAACA
GCCCGCCGCCGGGGGGCATCGGCGGCTGGTGCCGGGGCGCGGTCGGGGCGGAGACGCTGTCCTTCCTGGCGGACAACAGC
AGCGGCAGGGGCTTCTACCACTTCGTCCACGCGCGCGCGCTCCGGCACGGCGCCTGCTTCCGCACCGTGCTCTTCGGCCG
CACCCACGTCTTCCTCCTCTCGTCCCGCGCGCGCGCCGCCGCCGCCAGCCTCCTGGCCGCCGACCCGCCCCACCTCGCCA
AGCGCTACGTGCGCACCGTCGCCGACCTGCTCGGCGAGCACAGCCTCCTCTGCACCTCCCACGGCGCGCACCGCCGCATG
CGCCGCGCCGTCGCGGGCCTCTTCGCCGCCGCGCCCACGGCCGCCTTCGCCGCCGCCTTCGACCGCCTGATCACCGCCCG
GCTGCTGGCCGACGGCTGCACGGGCCGGGCCGTCGTGCTGGACGCCGCGCTCGACGTCACCTTCAGGGCCATCTGCGAGA
TGCTCATCGGACCACAGGAGGATGCACATAAGCTGGGACAGCTGCAGAGCGACGTCATGGACGTAACGCAAGCCATGCTC
GCGCTGCCAATCAGGCTGCCTGGAACAAGGTTCTACAGAGGCCTACAGGTACCTTTTTTTTTTCTTCTAATGTTTTTACA
GTTTTGCTTATTTCTTTTTACTTTTT-CGCCACTCGAAACCATCACTGTCCGATCTAGATTGACTAGATCACTAGATACC
AAGATTCGCGCAAGTATGCATGTTTTTAGTTACTACAAATTCACAAGAAGGGAATGATTCCTAGCTAGATTCTTGGTGTG
GAATTGC-T-TTGATGTCAGGCAAGGAAGAGGATCATGGATGCACTGAGGCAAGAAATATGCATGAGGCGAGAAAATGGC
CTGAAACTAGATCGCCGCGACGACTTTCTGCAGACCCTTCTTCTCAAGAGCCATATGGATTCACCTGAAGAAGCGCTCAC
GGATGAACAGATTCTGGACAACATTTTGACACTCATAATTGCAGGTATAGATATATGTCAGTCATAATTCAGTTGTTAAC
TTGCAAAGACTTAGTTGAAATTTCAATCCAGGTGCATGGGGTAAGTCTTGTTTGTAACTGAGTGCAGGGCAAGTGACAAC
AGCAACGGCAATTACATGGATGGTCAAGTACCTGGGCGACAACACAGACCTCCAAGAGAAATTAAGAGTGAGTGAGGACT
GAGGAGTCATTCCATCTCATCTGATCTAACCATCTTACCCATACATAGCCCATGTATGAAGAACAAGTTACTTCATTTCT
TGATTGCAATTCTCTATCTACATG--TATGCAGTCAATTCAGCTGGATCTGGCATCCAAGCACCATGACGCACCTCTTAC
CCTACAACATCTGAACACCATGGACTACGCATACAAGACAGTCAAAGAATCCTTGAGGATGGCCACCATAGTTTCTTGGT
TTCCAAGGGTGGCACTCAAGGACTGCCAGGTTGCAGGTAACTAAACCTCGCTGATTTTA-TGCTTTCTCCTTGCTGGAAG
CTACAGTTCTATTAACAGAGACAAGTAACAATAGGATTCCACATTAAGAAGGACTGGATCATAAATGTCGACGCGAGATC
CATACACTATGATCCGGCCATCTATGACAATCCAACGCTGTTTGATCCTTCCAGGTTCAATGTATGTATTGTTGTAAGCC
TGAAGAAATTATAG------------------------------------------------------------------
-------------------------------------------------------------------------TAGATAT
ATATTGTGTTGTGATGTCGACAGATTGATGTTGTTGCTATGGACAGGACGATATGAAGCCATACAGCTTCTTGGTCTTTG
GAGCAGGCAGCAGAACATGCCTGGGGATGAATCTTGCCAAGATTATGATGCTAATATTCCTTCATCGCCTCATCACAAAT
TTCAGGTCTCAGCTCTAAAGTCAAGTTTCTTTATTTTGATGCAAGGCGCAAACAAGTA-GAGCTGGAGAGTAAAACTAAA
ATG-TCTGATGTTTTCAGATGGGAGATGGCAGACCACGATACAAGCCTCGAGAAATGGGCAATGTTTCCAAGGCTGAAGA
ATGGCTGCCCAATTCGGCTCACGCCGATACGCAAGGACAAGATGCACTGATGACTGATGCACATCTAGTAAATCTGTCAG
GATATGCATCCAATTATGAAGCTATGTGATTTTCCTTAGTTGTTACATACTCCAACAGATGAAACAAATTCTTGATTCCT
TTTTTTGGATGAGCCAAGATCAAGCCTAGCTAGCTGATAATTTC-AAATAAAGTCAAATAAAAGAAAGGGACAAGGAAGT
GCTGCTGGTCTTTGTGATATTTT-A-TGACATGTATGCATGCAGTACGCTAACTTGGTGCAAGCAGGGCAAACCCTCAGA
AATTTCTTTTCAGAGTTGAGATGAATTAAAACCAACAGAACATCAAAGTCTCAGCTAATTCAGATAT-----GGACTGAA
TCATCAATCAATCTGCATACAAGAAATGAAAACTGACCAAAACTGGAATCTACCCAGCATAGTTTCCCTCCCCTATTTA-
--------------------------------------------------------------------------------
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----------------
>chr1A_44
-------------------------------------------TAATTTTGAATAAATATGTTTTTGTTTGGAATTCGTT
TTTACCTGGCTTGAAAATTTGGGGTTTAAAGTATTTCAGTACCCACCGTAATAATCATTTTTTTTTGTAAAATTACTCTG
CGTGATAGCTCATTAATCAGATGAACCTTGAACCTGATCAATA-------------------------------------
-------------------------------------------TATAAAAGACAGCAGTAGTCTCCTCTAGCATGAGAAA
AGTTTCAGGTTTTTTTTTTTGATATTTTTCACTATTTATTTCGATTTACTGTTCACCGGTAGATGAGCCCCGGGCTCCAG
TTGAATTATCGCCTCCGTGTCTACTTTTCTTCGTCAATCGTCAAGCTCCATTAGTAC-----------------------
-------------------------------------------------TTCACTAGTAGCTACTCTAGCTAGGAAGGTA
GGTTAGTCACACGAATGATATGATG----------------------ATGATCGAAGGCCATAT---GCCCATAGATATG
CGGGCGACAAGTCATCACTGGTTAAGTGAGTGGGAAATTGGGTGGGTTCCTCTTCCTGGAGATACTCCTCGACTGGACCA
GAATATGCGGCCGTTCAGTCAATGGGAAAACACACAACTCGACTAATAAAGCTGACTGAACTTTGGTTCGTGCTGGTTGG
TCATATCTGCCTGCCTGACCTGTGA-CCTGGAAGCTAAGATCATGACGACACACAGCACCCGCCATGCAAATGGAATGGA
ATGAAATGACATCCCGCATCTCGTCAACGTACTTATTTGCGTGAACAGAGAGACGATGATACTCATCTTGAAACGCAAGC
GAG----------GGACGGCGGGAAAAGATGCG----ATGCAACTAGCGCAAGTGCGGTTGGAATCCATCAGATCAGGTA
TCCCTCCAGGATCCATCGCCATGATTGATCTGGAGAATGGTTGCACCA----GACTCGGTCATATAT--CGCGCGTGCAT
GTCTGCTTAGATATGCGTGCGTGCCAGCGCTAGCGCCAGTGAAACCACATTA---GTCACTAGCTCGCGCGCGCCGGCCG
GAGACGATGTCGA------CGTCGACGCCGACGACGGCGGAGCTGGCATGGCGCTTCGCGGCCGCTCACGTCTTGCTGTT
GTTACCGGTAGTCGTCGGCGGCATCGCCTACCTCCTCCTCCGCGCCCTACGCGCTTCACAACTCCGGCAAGAAGGCAACA
GCCCGCCGCCGGGGGGCATCGGCGGCTGGTGCCGGGGCGCGGTCGGGGCGGAGACGCTGTCCTTCCTGGCGGACAACAGC
AGCGGCAGGGGCTTCTACCACTTCGTCCAGGCGCGCGCGCTCCGGTACGGCGCCTGCTTCCGCACCGTGCTCTTCGGCCG
CACCCACGTCTTCCTCCTCTCCTCCCGCGCGCGCGCCGCCGCCGCCAGCCTCCTGGCCGCCGACCCGCCCCACTTCGCTA
AGCGCTACGTGCGCACCGTCGCCGACCTGCTCGGCGAGCACAGCCTCCTCTGCACCTCCCACGGCGCGCACCGCCGCATG
CGCCGCGCCGTCGCGGGCCTCTTCGCCGCCGCGCCCACGGCCGCCTTCGCCGCCGCCTTCGACCGCCTGATCGCCGCCCG
GCTGCTGGCCGACGGCTGCACGGGCCGGGCCGTCGTGCTGGACGCCGCGCTCGACGTCACCTTCACGGCCATCTGCGAGA
TGCTCATCGGGCCACAGGAGGATGCACATAAGCTGGGACAGCTGCAGGCCGACGTCATGGACGTAACGCAAGCCATGCTC
GCGCTGCCAATCAGGCTGCCTGGAACAAGGTTCTGCAGAGGCCTACAGGTACCCTTTTTTTTTCTTCTAATGTTTTTACA
GTTTTCCTTATTTCTTTTTACTTTTTCCGCCACTCGAAACCATCACTGTCCGATCTAGATTGACTAG--------ATACC
AAGATTCGCGCAAGTATACATGTTTTTAATCACTACAAATTCACAAGAAGGGAATGATTTCTAGCTAGATTCTTGGTGTG
GAATTGC-TGTTGGTGTCAGGCAAGGAAGAGGATCATGGATGTACTGAGGCAAGAAATATTCGTGAGGCGAGAAAATGGC
CTGAAACTAGATCGCCGCGACGACTTTCTGCAGACCCTTCTTCTCAAGAGCCATATGGATTCACCTGAAGAAGCGCTCAC
GGATGAACAGATTCTGGATAACATTTTGACACTCATAATTGCAGGTATACATGTATGCAAGTCCTAATTTAGTTCTTAAC
TATAAAGACTTTCTAAGTTGTTAGCTACAAACAAACC---------CTTGTTTGTAACTGAGTGCAGGGCAAGTGACAAC
AGCAACAGCAATTACATGGATGGTCAAGTACCTGGGCGACAACACAGATCTCCAAGAGAAACTAAGAGTGAGTGAGCTGC
ATATTTG----------------------------------------GCCCATATATGAAGAATAAATTACTTCATTTAT
TGATTGCAATTCTCTCTGTATATGTATATGCAGTCAGTTCAGCTGGATCTGGCATCCAAGCACAATGATGCACCTCTTAC
CCTACAACATCTGAACACCATGGACTACGCATACAAGACGGTCAAAGAATCTCTGAGGATGGCCACCATAGTTTCTTGGT
TTCCAAGGGTGGCACTCAAGGACTGCCGGGTTGCAGGTAACTAAACCTCTCTGA-TTTA-TTCTTCCTCCTCGCTGGAAG
CTACT-----ATTGACAGAGACAAGTAACAACAGGATTCCACATTAAGAAGGACTGGATCGTAAATGTCGACGCGAGATC
CATACACTATGATCCGGCCATCTATGACAATCCGACGGTGTTTGATCCTTCCAGGTTCAACGTATGTATTCTTGTAAGCC
TGAAGAAATTATAG------------------------------------------------------------------
-------------------------------------------------------------------------TAGATAT
TTATTGTTTTGTGATGTAGACAGATTGATGTTGTTGCTATGGACAGGATGATATGAAGCCATACAGCTTCTTGGTATTTG
GAGCAGGCAGCAGAACATGCCTGGGGATGAACCTTGCCAAGATTATGATGCTAATATTCCTTCATCGCCTTGTCACAAAT
TTCAGGTTTCAACTCTAAAGCCAAGTTTCTTTATTTGAT--------GCAAACAGATATGAGCTGGAGACTAAAATTAAA
AT-TTCTGATGTTTTCAGATGGGAGATGGCAGACCACGATACAAACCTTGAGAAATGGGCAATGTTTCCGAGGCTCAAGA
ATGGCTGCCCAATTCAGCTCACGCCGATACGCAAGGACAAGATGCACTGATGACTGATGCACATCTAGTAAATCTGTCAG
GATATGCATCCAATTATGAAGCTATATGATTTTCCTTAGTTGTTACATACTCCAACAGATGAAACAAATTCTTAATTCCT
TTTCTTGGATGAGCCAAGATCAAGCCTAGCTAGCTGATAATTTCAAAATAAAGTCAAATAGAAGAAAGGGACAATGAAGT
GCTGCTGGTCTTTGTGGTATTTT-ATTGACATGTATGCATGCAGTATGATAACTTGGTGCAAGCAGGCCAAACCCTCAGA
AATTTCTTT-CAGAGCTGAGATGAA----AATCAACAGATCATCAAAGTCTCAGCTAATTCAGATAT-----GGACTGAA
TCATCAATCAATCTGCATACAAGAAATGAAAACTGACCAAAGCTGGAATCAATCCAGCATAGTTTCCCTCCCCTATTTAG
AAAAGGGTCGATGAAGAATGTGTTTGGAATATGCCCAAGATGCTACC-ATGTTCAATGATTTATTTAATAATGTACTTGA
ACAACCATGGGCAAGTATGTGACTTGCTTATGAAACTCCGTATTCATATTTATAAT-----------------ACTAAAG
AGTGAATATTCCAAATAAGTCCCCAGTCTGAACTCATATGACGATACAAAATAATTAACCAGCATACATATTGATTAATG
ATCATGTTTCAGAGGTCATTGAAATACAGATGTCTAAC------------------------------------------
--------------------------------------------------------------------------------
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----------------
>SNPs
----------------------------------------------------------S---------------------
-------------------S---------------S--------------------------------------------
------------------------------------S--------------------------S---------S------
---------S------S-S---------S------S------------------------S-------------------
--------------------------------------------------------------------------------
------------------------------------SSSS----------------S--------------S---S-S--
------------------------------------------------------S-------------------------
----------------------S------------------------------------------S--------------
---------------------------S----------------------------------------------------
---------------S----------------------------------------------------------------
----S--------------SSSSS-S------------------------------------------------------
-----------S-------S--------SSS----------------------S----------------------S---
----S-----S----------------------SS-S-------------------------------------------
-------------------------------------------------------------------S------------
---------------------------------S----------S-------SSS--------------S----------
--------------------------------------------------------S-----------------------
---------------------------------------------S--------------------------SS---SS-
-------------S--------------------------------------------------------S---------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
---------------------------S----------------------------------------------------
--------------------S-----S-----------------------------------------------------
---------------S---S--SS-S-SSS------SS------------------------------------------
---------------------S----------------------------------------------------------
---------S----------------S-----------------------------------------------------
----------------------S-------------SSSSSSS--S--------S-------------------S--S-S
S-----SS----------------------------------------------------S--S----------------
-------------S---S--------------------------------------------------------------
--------------------------------------------------------------------------------
--S----------SS-S--S---------------S--------------------------------------------
---------------S--------------------------------------------------------SS------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------SSS---------S----------
----S--------------S-------------------------------------S-------------S--------
---------------SS------------S------S-------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-
----S----------S--------------S-S--S--------------------------------------S-----
--------------------------------------------------------------------------------
-------------------------------------------------------S-------------S----------
-SS---------------------S--------------------------------------------------S----
--------------------------------------------------------------------------------
------------S------------------------S------------------------------------------
-S------------------------------------------------------------------------------
-------------S---------S------------------------------S-------------------------
------------S----------------------------S-------------S---S-------SSSSS--------
-----------------------------------------------S-------------------------------S
-----------------------------------------------S-------------------S------------
----S------------------------------S---S-----S-S-S-S----SSSSSSSSSSSSSSSSS-------
-S---------------------S---------------------S----S-----S-----------------------
--------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_805
--------------------------------------------------------------------------------
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-----------------------------------------------------------------GTTCGTGCTGGTTGG
TCATG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2258
--------------------------------------------------------------------------------
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-----------------GGACGACTTTCTGCAGACCC-------------------------------------------
--------------------------------------------------------------------------------
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----------------
>forward_910
--------------------------------------------------------------------------------
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----------ACCCGGCATTTCGTCAACTA--------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_2553
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CAAGCTGC
ATATTTGGCCCA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>forward_911
--------------------------------------------------------------------------------
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-----------CCCGGCATTTCGTCAACTAC-------------------------------------------------
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----------------
>reverse_2554
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------AAGCTGC
ATATTTGGCCCATG------------------------------------------------------------------
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----------------
>forward_997
--------------------------------------------------------------------------------
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------------------GCGGGAAAAGATGCGATCG-------------------------------------------
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>reverse_2990
--------------------------------------------------------------------------------
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-----------------------------GTCCGACAGTGTTTGATCCT-------------------------------
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>forward_1473
--------------------------------------------------------------------------------
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--------------CTACCACTTCGTCCACGCC-----------------------------------------------
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----------------
>reverse_3172
--------------------------------------------------------------------------------
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---------------------------------------------------GAATCGGAGGGAGAGGGAGT---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
>forward_2258
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GGC
CTGAAACTAGATCACCGG--------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_3174
--------------------------------------------------------------------------------
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-----------------------------------------------------ATCGGAGGGAGAGGGAGTAC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------
>forward_2952
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------GGACTGGCTCGTAAATGTCGAT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_4539
--------------------------------------------------------------------------------
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----------------------------------------------------------AACATGCAGCTTGTCCTCGA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
