>input_sequence_31898
--------------------------------------------------------------------------------
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-------------------------------------------ATGATCAAGAGGCGCTACTTCAGGCAAGACCACGGCG
ACAATAGCGCCTCCTCGTCCTCCTCCTCTTCGGGTTCTGATTCGGACCGCGACCCCGCGGAAGAAGAGGTCTCGGAGGAG
GAAGTAGAAGGGGAGCAAGA------AAAAGAAGAAGAAGATGATGATGAAGAAGCGGAGGTGGAGTCGGGGGAAGAACA
GGAAAAGGAAGTAGATGAGCAGGCCGAAGATGAGGGTGAGCTGTTCTTTGTTACCACTATCTATATTATTGGTGCCATTT
ACATGCGCTGTTCAGGTCATTCTCCATGTGTCATGCGTCATGCGTAGCCGATTTGTTTGTACTAGTGAATATGCTC----
--------------------ACTTTGATTCCATGGATATATTCGACCTGTACTATTGCTTCATATACTGAGTATGCAACT
CTTAGAGGGTGATGTCATATTAAAACCATCGGAGTAGAGTAATCATCATTTGCTCTTGTTAATTTGCTCTGTCCTGCCAA
AGCCTCGGTATTTATTTAATATTCTTGCATGGTATATCTGCTGCATGTTGTTGGTTTTGATGGTCCACGAATCACTATAA
TACATTAATGTGTAGATATTGTAATGTGCTC-TTTTTCTCATTGGTTGCTCCTGTCTATCAGGTTCAGGATACCAAAGTG
AGGACAGCTCTGGACATCATGTTGATAGTCCTTGTGCAGGTATTCTTTGTTCTCGCTTCCATGCCCCCTTCAATTTGGAT
TAGGAGAGATTGCATTTTTTAATGGAAAGGAGGTTCAAAGAAAGCTGTCATTTGGGCTAAATTACGCTCTCTCTTGTAGT
GAAGTG--GCTAATACTGTCTGTGATTACATACC----------------------------------------------
-----------------------------------TTTTTCTTGCCTTTCCAGATGTTTCACCGGCTTGTTTAGTGTCAT
TGAGGCTTGAGGGACCTTTTGTTTGTATTTTTCGTACATAGGAACACTAGCCTTTTAATGTCATCTCACAGGACTACATT
CATGCTAAGAGAAGTGCAATTGTCTTCCTATACCGCCTTCACCTTATTGTTTGGCAACTAAGAACTGCTCTGTGTTACCT
TAGGATGTTACCAATGGGATCTAAGTTTACTAGTCAATGACCGCAGGGTGTGGAATTTGATCTCAGTATACTGTGGTGGG
GTATTGGAGGATTGAACATAGAGTTAGACAACCAGAATGTTAAGTATCATTACCTAAACATACCATGTAATGTTTCAATA
TGAGCATAAGTCGCTTTATTGAGTAAT-----TTATCACATGACCGAACTCTCTGCAAGCAACTTTACCGACTAACTACA
GGTTTACTTTCAGATGAGAACAGCAGTCTGGTGTATGAACAATACCAAGCAATCAGGTTGCCTGCTAAGAAAGCATCAAG
TGGTGATGCTGATTCTGCCGAAGGTGCTGTTAACAAGGATGACACTGTTGAGGTCGATTTCAATAACTACATTCTGAAGT
GCAAATCTGTGTATAAGTGCAAGCTTTGTCCCAGAATCATGTGCTTAAGTGAGGAGATGGTCAGGGTACATCTTGAATCA
AAGGTATGTAATTCAGAAGAAAGCTACTATAATGTTTCCCACCTGTTAGACGTCAACTGAAGAAGGCTTGCTGTTGTACA
TATAAGAC---AATGACAGGAGTTACATCTCTTTGTTGAAAATTGATAAGAGTTACTTGCTGTCACTTGTGAATGCTACT
GTTGCCACATTTCTTCATTTTATTTTG-TCTATTTTAGAGACATGCTCGATCAAAGAAACTACTGGGAGAAGGTAGGCTT
AAGATGGTGCTCAACAGTGATGGTGAGCTGGAGGAAGAGGCAGAGACACATGCTGAACGACATGCCCGAACTATAGCTCT
TGCTCAGGTGTTGGCACTGGTTGTTGAAATTACTGATTTCGTGCGACAGAAATGTTTTCTAAATCTGGATTTGTATTTCA
TATGGAATTTAATCTGTTTATACCTGCTAAATGTTCAGCAAGTACAAAAGCCCAAGAAGGATTCAGGCAGGCAGCGACAA
AATCGGAGAAGACAGAAGGTATGGGATCACATCCTCCATAGTTGTATTAGCATCTAGGCACAATACACATCGAAGGCTTT
TAGGCGCCATATTAAAAGGCAGACTGGACTGCGCTGAAATGATCTCCAGCAGCATGTCATCATGGAGGTTACAGTAAGG-
-TGATGGATACAGAATAATTCGATTTTTTTGGTGAATGGATAAATCTGATATTCATTTTTTTAAGAAACCACGATAGTCC
AATTTTGTTTGTCCTGTATTCGTCTTAGTTCTTGAAGTTGCTTGGTGCTTTTGCACCCAGTATCCTGATATTCTTTGCAC
TGGTTGTTTCTTACAGAGGTCGCAGAATCGTCTCAAGGACAAAGATCAGAGACACAGCTCTGGAAAGGAAGGTGCAAGGC
CGAACAATGGAACTGCTGATAAGAAAATGCCGAATGTTGAAACTGCTGCTAAGAAAATGCCGAATCTTGAAACTGCTGCT
AAGAAAAGGCGCAAGACTGAAAAATAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>chr1A_1_TraesCS1A01G198200
TCGAAGCAATTGCAACCAGAGAGGCCTTGGCACTATCAGATGATCTTTATCAGCGGCGGATTCATGTTGCCTCTGATTGC
AAAGTGGTGGTGAACGACTTGAAAAAGAAAAACTTATCTGCCTATGGAGCTATCATACATGAAATAATACGCCACTCGTC
AGATTTTGTTTTTTTTTGTAAATTTAGCCATAAATTTAGGAGCTCAAATTTTGAAACTCACAACTTAGCGAAGCATGCTT
TATCTCTCGGGGGTGGCTGCCATGTGTGGTTGGGAAACCCTGAAGAACTTTCATCCATCCCTGTAAATATTGTGACAAAT
TAATAAAAACTTCGTGAGGTTGTCTAAAAAAACCAAACCGCAAAGAAAACCAGCCCTCAAAAGGAAAACCGGAAAGAAAA
CCCAACGGGCAAAAGGAAAGGCGGTCCAGCGGGCGAGCTGTTGAGCCCCAACGCACGGAATAAAAAGAAGAGGAACTGGA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAGGAACTGGGGTATGACCTAGATCGAACGGCCTGGG
CTTCTCTGCGCGCCTACACAGCCCTGCCTCCTCCTACGCTGTCTTCTGCTTCGTCCAGCATAACCCCCAAAACCACCTCA
CCCGACAGAACAGGCGGCGGCGGCGGCGGA---ATCGGGCGAGATGATCAAGAGGCGCTACTTCAGGCAAGACCACGGCG
ACAATAGCGCCTCCTCGTCCTCCTCCTCTTCGGGTTCTGATTCGGACCGCGACCCCGCGGAAGAAGAGGTCTCGGAGGAG
GAAGTAGAAGGGGAGCAAGA------AAAAGAAGAAGAAGATGATGATGAAGAAGCGGAGGTGGAGTCGGGGGAAGAACA
GGAAAAGGAAGTAGATGAGCAGGCCGAAGATGAGGGTGAGCTGTTCTTTGTTACCACTATCTATATTATTGGTGCCATTT
ACATGCGCTGTTCAGGTCATTCTCCATGTGTCATGCGTCATGCGTAGCCGATTTGTTTGTACTAGTGAATATGCTC----
--------------------ACTTTGATTCCATGGATATATTCGACCTGTACTATTGCTTCATATACTGAGTATGCAACT
CTTAGAGGGTGATGTCATATTAAAACCATCGGAGTAGAGTAATCATCATTTGCTCTTGTTAATTTGCTCTGTCCTGCCAA
AGCCTCGGTATTTATTTAATATTCTTGCATGGTATATCTGCTGCATGTTGTTGGTTTTGATGGTCCACGAATCACTATAA
TACATTAATGTGTAGATATTGTAATGTGCTC-TTTTTCTCATTGGTTGCTCCTGTCTATCAGGTTCAGGATACCAAAGTG
AGGACAGCTCTGGACATCATGTTGATAGTCCTTGTGCAGGTATTCTTTGTTCTCGCTTCCATGCCCCCTTCAATTTGGAT
TAGGAGAGATTGCATTTTTTAATGGAAAGGAGGTTCAAAGAAAGCTGTCATTTGGGCTAAATTACGCTCTCTCTTGTAGT
GAAGTG--GCTAATACTGTCTGTGATTACATACC----------------------------------------------
-----------------------------------TTTTTCTTGCCTTTCCAGATGTTTCACCGGCTTGTTTAGTGTCAT
TGAGGCTTGAGGGACCTTTTGTTTGTATTTTTCGTACATAGGAACACTAGCCTTTTAATGTCATCTCACAGGACTACATT
CATGCTAAGAGAAGTGCAATTGTCTTCCTATACCGCCTTCACCTTATTGTTTGGCAACTAAGAACTGCTCTGTGTTACCT
TAGGATGTTACCAATGGGATCTAAGTTTACTAGTCAATGACCGCAGGGTGTGGAATTTGATCTCAGTATACTGTGGTGGG
GTATTGGAGGATTGAACATAGAGTTAGACAACCAGAATGTTAAGTATCATTACCTAAACATACCATGTAATGTTTCAATA
TGAGCATAAGTCGCTTTATTGAGTAAT-----TTATCACATGACCGAACTCTCTGCAAGCAACTTTACCGACTAACTACA
GGTTTACTTTCAGATGAGAACAGCAGTCTGGTGTATGAACAATACCAAGCAATCAGGTTGCCTGCTAAGAAAGCATCAAG
TGGTGATGCTGATTCTGCCGAAGGTGCTGTTAACAAGGATGACACTGTTGAGGTCGATTTCAATAACTACATTCTGAAGT
GCAAATCTGTGTATAAGTGCAAGCTTTGTCCCAGAATCATGTGCTTAAGTGAGGAGATGGTCAGGGTACATCTTGAATCA
AAGGTATGTAATTCAGAAGAAAGCTACTATAATGTTTCCCACCTGTTAGACGTCAACTGAAGAAGGCTTGCTGTTGTACA
TATAAGAC---AATGACAGGAGTTACATCTCTTTGTTGAAAATTGATAAGAGTTACTTGCTGTCACTTGTGAATGCTACT
GTTGCCACATTTCTTCATTTTATTTTG-TCTATTTTAGAGACATGCTCGATCAAAGAAACTACTGGGAGAAGGTAGGCTT
AAGATGGTGCTCAACAGTGATGGTGAGCTGGAGGAAGAGGCAGAGACACATGCTGAACGACATGCCCGAACTATAGCTCT
TGCTCAGGTGTTGGCACTGGTTGTTGAAATTACTGATTTCGTGCGACAGAAATGTTTTCTAAATCTGGATTTGTATTTCA
TATGGAATTTAATCTGTTTATACCTGCTAAATGTTCAGCAAGTACAAAAGCCCAAGAAGGATTCAGGCAGGCAGCGACAA
AATCGGAGAAGACAGAAGGTATGGGATCACATCCTCCATAGTTGTATTAGCATCTAGGCACAATACACATCGAAGGCTTT
TAGGCGCCATATTAAAAGGCAGACTGGACTGCGCTGAAATGATCTCCAGCAGCATGTCATCATGGAGGTTACAGTAAGG-
-TGATGGATACAGAATAATTCGATTTTTTTGGTGAATGGATAAATCTGATATTCATTTTTTTAAGAAACCACGATAGTCC
AATTTTGTTTGTCCTGTATTCGTCTTAGTTCTTGAAGTTGCTTGGTGCTTTTGCACCCAGTATCCTGATATTCTTTGCAC
TGGTTGTTTCTTACAGAGGTCGCAGAATCGTCTCAAGGACAAAGATCAGAGACACAGCTCTGGAAAGGAAGGTGCAAGGC
CGAACAATGGAACTGCTGATAAGAAAATGCCGAATGTTGAAACTGCTGCTAAGAAAATGCCGAATCTTGAAACTGCTGCT
AAGAAAAGGCGCAAGACTGAAAAATAAGTCGGTGCTGCAGAAATATTTCTTGCGTGTCATTTCTTCCTATATTGTTGTAA
TTTTTAGGAGCTTTCTGCGGTTTTACTGTTTCTGGTTTGCTTCTTT---------AAGTGTAGTTCATGAAAGCTGAGAG
ATTAAATTGAAAGGAAAGACGACAACTAGAAAGTGGACATTTAATCGTGCATGCAACTTGTTATAAGTTTGCTACTCCC-
--------------------------------------------------------------------------------
--------------------------AGTAATTTGTAGGGTTT-GACACGGTTGAAGTTTCACCCTCGTATCCTTCTCAC
AATTTTTGTGTCTGCTTTGGTTCTTCATGCCTGCTTTTGGTCTTTGTGTTGCAGTTATTTGTTGGGGGGAAGGCATTCA-
--------------GCTCATGGTTGAATAGTAAATTCAGAAAACAGAACTAAAATGAAATTTAGTTCTTTTTTTTTATTA
TAGAAAACATGTTTATGTCTTTTAAATGTGCGCAAAATTTTGTGAAGAATGGAATATATTTTGAGCTTTGGAGTTCTCCT
TAGGAGACTTTAGGGTCATTAGTCTAGATATGGATGTATCTAATACTAAAACATGACTTGATACATCCGTATTTAGACAA
ATCTAAGACAAGAATTTTGGGACGGAGGGAGTATGTAAAGATGATAGATTTTTTGGAAGTCATGCTTCACGTGGGAAGAG
CGGCCCGGGCTGCTCGGCCTATGCCTCGACATGTTGTGCCTTAGGCCGACCTGGCGACCGACTTCTCGGTTTACATGCCG
TCCCTACTATGTATCGTCAATAGCTTTCGAGCTTGTTCAGAATTTGACCGTGCACCCTTGGTTTGACGTTGTCGGTGCTC
TTGAGAGTTGGTGTTGCGTAGAGGATAGATGCTTGCTTGACGATCATTGCGCGTGGTACGGTGAAGAGTGTTCGATGTCG
GTGTACTTGAGCCGGAAAGGGTGAAGTCGGAGTGTTGACTTGAGCGGGTCCTTGATGAGGACGAAGTGGAAGAAGAGCGG
TTGAGCAACAAAGCGCGAATCTCATCCATTCTTGCGTTG
>chr1B_420
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GGCGGTCCATCGGACGAGCTGTTGAGCCCCAACGCACGGAATAAAAAGAAGA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGAACTGGCGTATGACCTAGATCGAACGGCCTGGG
CTTCTCT--GCGCCTACACAGCCCTC---CCTCCTACGCCGTCTTCTGCTTCGTCCAGCATAACCCCCAAAACCACCTCA
CCCGAGAGAACAGGCGGCGGCGGCGGCGGCGGCATCGGGCAAGATGATCAAGAGGCGCTACTTCAGGCAAGACCACGGCG
ACAATAGCGCCTCCTCGTCCTCCTCCTCGTCGGGTTCAGATTCGGACCGCGACCCCGCGGAAGAAGAGGTCTCGGAGGAG
GAAGTAGAAGAGGATCAAGAACAAGTAAAAGAAGAAGAAGATGATGATGAAGAAGCGGAGGTGGAGTCGGGGGAAGAACA
GGAAACGGAAGTAGATGAGCAGGCGGAAGATGAGGGTGAGCTCTTCTTTATTACTACTATCTAC----TTGGTGCCATTT
ACATGCGCTGTTCAGGTCATTCTCCATG-------CGTCATGCGTAGCCGATTTGTTTGTACTAGTGAATTTGCTCACTT
TGATTCCATGGACATATTCGACTTTGATTCCATGGACATATTCGACCTGTATTATTGCTTCATATACTGAGCGTGCAACC
CTCAGAGGGTGATGTCATATTAAAACCACCGGAGTAGAGTAATCATCATTTGCTGTTGTTGATTTGCTCTGTCCTGCCAA
AGCCTCAGTATTTGTTTAATATTCTTGCATGGTATATCTGTTGCATGTTGTTGGTTTTGATGGTTCACGAATCACTATAA
TACATTAATGTGCAGATATTGTAATGTGTTCTTTT-TCTCATTGGTTGCTCCTGTCTATCAGGTTCAGGATACCAAAGTG
AGGATAGCTCTGGACATCATGTTGATAGTCCTTGTGCAGGTATTCTTCGTTCTCGCTTTCATGTCCCCTTCAATTTGGAT
TAGTAGAGATTGTATTTTTTGATGGAAAGGAGGTTCGAAGAAAGCTGTGATTTGGGCTAAGTTACCCTCTCTCTTGTAGT
GAAGTATAGCTAATACTGTCTTTGATTACATACCAGGACACTTCTGTCTTCCGTATTAGATTCTGTCGTACGAGATGTTG
GGAGTTAAGTATTGTCGTGGTCCGTGGTATCACCCTTTTTCTTGCCTTTCCAGGTGTTTCACTGCCTTGTTTAGTGTCTT
TGAGGCTTGAGGGACCTTTTGTTTGTATTTTTCGAACATAGGAACACTAGCCTTTTAGTGTCATCTCACAAAACTACATT
CATGCTAAGAGAAGCACAATTGTCTTCCTATGCTGCCTCCACCTTGTTGTTTGGCAACTAAGAACTGCTCTGTGTTACCT
TAGGATGTTACCAATGGGTTCTAAGTTTACTAGTCAATGACCGTAGGGTGTGGAATTTGATCTCAGTATACTGTGTTGGG
GTATTGGAGGATTGAACATAGAGTTAGACAACTTCAATGTGAAGTATCATTACCTAAACATACCATGTAATGTTTCAATA
TTAGCATAAGTCGCTCTATTGGTTAATTAGTGTTATCACATGATTGTACTCTCTTCAAGCAACTTTAACGACTAACTATA
GGTTTACTTTCAGATGAGAACAGCAGTCTGGTGTATGAACAATACCAAGCAATCAGTTTGCCTGTTAAGAAAGCATCAAG
TGGTGATGCTGATTCTGCCAAAGGTGCTGTTAACAAGGATGACGCTGTTGAGGTCGATTTCAGTAACTACATTCTGAAGT
GCAAATCTGTGTATAAGTGCAAGCTTTGTCCCAGAATCATGTGCTTAAGTGAGGAGATGGTCAGGGTACATCTTGAATCA
AAGGTATGTAACTC---AGAAAGCTACTATAATGTTTCCCACCTGTTAGACGTCAAATGAAGAAGGCTTGCTGTTCTACA
TATATAAGACAAATGATAAGAGTTACCTCTCTTTGTTGAAAATTCATAAGAGTTACTTGCTGTCACTTGTGAATGCTACT
GTTGCCACATTTCTTCATTTTATTTTTTTCTATTTTAGAGACATGCTCGATCAAAGAAACTACTGGGAGAAGGTAGGCTT
AAGATGGTGCTCAACAGTGATGGTGAGCTGGAGGAGGAGGCAGAGACACATGCTGAACGACATGCCCGAACTATAGCTCT
TGCTCAGGTGTTGGCACTC---GTTGAAATTACTGATTTTGTGCAACAGAAATGTTTTCTAAATCTGGATTTGTATTTCA
TATGGAATTTAATCTGTTTATACCTGCTAAATGTTCAGCAAGTACAAAAGCCCAAGAAGGATTCAGGCAGGCAGCGACAA
AATCGGAGAAGACAGAAGGTATGGGATCACATCCTCCATAGTTGTATTAGCATCTAGGCACAATACACATCGAAGGCTTT
TAGGCGCCATATTAAAAGGCAGACTGGACTGCGCTGAAATGATCTCCAGCAGCATGCCATCATGGAGGTTACAGTAAAAG
ATGATGGACACAGAATAATCCGATTTTTTTGGCGAACGGAT-ATATATTCATT--TTTTTTTGAGAAACCACAATAGTCC
AATTTTGTTTGTCCTGTATTGGTCTTAGTTCTTAAAGTTGCTTGGTGCTTCCACACCCACTATCCTGATATTCTTTGCAC
TGGTTGTTTCTTACAGAGGTCGCAGAATCGTCTCAAGGACAAAGACCAGAGACACAACTCTGGAAAGGAAGGTGCAAGGC
CGAACAATGGAACTGCTGATAAGAAAATACCGAATATTGAAACTGCTGCTAAGAAAATGCCGAATCTTGAAACTGCTGCT
AAGAAAAGGCGCAAGACTGAAAAATAAGTGGGTGCTGCAGAAATATTTCTTGCGTGTTATTTCTTCCTATATTGTTGTAA
TTTTTAGGAGCTTTCTGCGGTTTTACTGCTTCTGTTTTGCCTTCCTTTTTGATCCAAGTGTAGCTGATGAAAGCTGAGAG
ATTAAATTGAAAGGAAATACGACAACTAGAAAGTGGACATCGAATCGTGCATGCAACTTGTTATAAGTTTGCTATTCCCT
CCGTCCCAAAATATAAAATCATTTTTGACACTAAGTCCTAATATATAAGATCATTTTTTACACCATCGATAGTGTAAAAA
ATGATCTTATATTTTGGGACGGAGGGAGTAATTTGTAAGGTTT-GACACGGTTGAAGTTTCACCCTCGTATGCTGCTCAT
GATTTTTGTGTCTGCTTTGGTTCTTCATGCTTGCTTTTGATCTTCGTGTTGCAGTTATTTGTTGGGGGAAGGCATTCTCG
GCCAT----------------------------------------GAGCTTAAATGAAATTTAGCTCTCTTTTTTTATTA
CATAAAACATGTTTATGTCTTCTAAATGTGTGCAAAATTTTGTGAAGAATGGAATATATTTTGAGCTTTGGAGTTCTCGT
TAGGAGACTTTAGGGTCA--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------
>chr1D_841
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGA---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGAACTGGCGTATGACCTAGATCGAACGGCTTGGG
CTTCTCT--GCGCCTACACAGCCCTC---CCTCCGACGCTGTCTTCTGCTTCGTCCAGCATAACCCCCAAAACCACCTCA
CCCGAGAGAACAGGA------GGCGGCGGCGGCATCGGGCGAGATGATCAAGAGGCGCTTCTTCAGGCAAGACCACGGCG
ACAATAGCGCCTCCTCGTCATCCTCCTCGTCGGGGTCAGATTCGGACCGTGACCCCGCGGAAGAAGAGGTCTCGGAGGAG
GAAGTAGAAGGGGAGCAAGAACAAGTAAAAGAAGAAGAAGATGATGATGAAG---CGGAGGTGGAGTCGGGGGAAGAACA
GGAAAAGGAAGTAGAGGAGCAGGCCGAAGATGAGGGTGAGCTCTTCTTTGTTACTACTATCTA--TTATTGGTGCCATTT
ACATGCGCTGTTCAGGTCATTCTCCATG-------CGTCATGCGTAGCCGATTTGTTTGTACTAGTGAATATGCTC----
--------------------ACTTTGATTCCATGGATATATTCGACCTGCACTATTGCTTCATATACTGAGTATGCAACT
CTTAGAGGGTGATGTCATATTAAAACCATCGGAGTAGAGTAATCATCATTTGCTGTTGTTAATTTGCTCTGTCCGGCCAA
AGCCTCAGTATCTGTTTAATATTCTTGCATGGTATATCTGCTGCACGTAGTTGGTTTTGATGGTTCACGAATCACTATAA
TACATTAATGTGCAAATATTGTAATGTGTTCTTTTTTCTCATTGGTTGCTCCTGTCTATCAGGTTCTGGATACCAAAGTG
AGGACAGCTCTGGACATCATGTTGATAGTCCTTGTGCAGGTATTCTTTGTT-TCGCTTTCATGCCCCCTTCAATTTGGAT
TAGGAGAGATTGCATTTTTTGATAGAAAGGAGGTTCAAAGAAAGCTGTCATCTGGGCTAAATTACGCTCTCTCTTGTAGT
GAAGTG--GCTAACACTGTCTGTGATTACATACCTGGACACTTCTGTCTTCCGTATTATATTCTGTTGTACGAGATGTTT
GGAGTTAATTACTGTCGTGGTCCGTAGCATCGCCCTTTTTCTTGCCTTCCCAGATGTTTCACCAGCTTGTTTAGTGTCAT
TGAGGCTTGAGGGACCTTTTGTTTTT-------GAACTTAGGAATACTAGCCTTTTAATGTCATCTCACAGAACTACATT
CATGCTAAGAGAAGTGCAATTGTCTTCCTATACTGCCTTCACCTTATTGTTTGGCAACTAAGAACTGCTCTGTGTTACCT
TAGGATGTTACCAATGGGATCTAAGTTTACTAGTCAATGACCGTAGGGTGTGGAATTTGGTCTCAGTATACTGTGGTGGG
GAATTGGAGGATTGAACATAGAGTTAGACAACCACAATGTGAAGTATCATTACCTAAACATACCATGTAATGTTTCAATA
TGAG----------------------------------CATGATCGAACTCTCTGCAAGCAACTTTAATTAGTAACTATA
GGTTTACTTTCAGATGAGAACAGCAGTCTGGTGTATGAACAATACCAAGCAATCAGTTTGCCTGTTAAGAAAGCATCAAG
TGGCGATGCTGATTCTGCCAAAGGTGCTGTTAACAAGGATGACACTGTTGGGGTCGATTTCAATAACTACATTCTGAAGT
GCAAATCTGTGTATAAGTGCAAGCTTTGTCCCAGAATCATGTGCTTAAGTGAGGAGATGGTCAGGGTACATCTTGAATCA
AAGGTATGTAATTCAGAAGAAAGCTACTATAATGTTTCCCACCTGTTAGACGTCAACTGAAGAAGGCTTGCTGTTGTACA
TATAAGAC---AATGATAAGAGTTGCCTCTCTTTGTTGAAAATTGATAAGAGTTACTTGCTGTCACTTGTGAATGCTACT
GTTGCCACATTTGTTCATTTTATTTTG-TCTATTTTAGAGACATGCTCGATCAAAGAAACTACTGGGAGAAGGTAGGCTT
AAGATGGTGCTCAACAGTGATGGTGAGCTGGAGGAAGAGGCAGAGACACATGCTGAACGACATGCCCGAACTATAGCTCT
TGCCCAGGTGTTGGCACTG---GTTGAAATTACTGGTTTCGTGCGACAGAAATGTTTTCTAAATCTGGATTTGTATTTCA
TATGGAATTTAATCTGTTTATACCTGCTAAATGTTCAGCAAGTACAAAAGCCCAAGAAGGATTCAGGCAGGCAGCGACAA
AATCGGAGAAGACAGAAGGTATGGGATCACATCCTCCATAGTTGTATTAGCATCTAGGCACAATACACATCGAAGGCTTT
TAGGCACCATATTAAAAGGCAGACTGGACTGCGCTGAAATGATCTCCAGCAGCATGTCATCATGGAGGTT----------
---------ACAGAATAATCCGTTTTTTTTGGCGAACGGAT-AATCTGATATTCATTTTTTTGAGAAACCACAATAGTCC
AATTTTGTTTGTCCTGTATTGGTCTTAGTTCTTGAAGTTGCTTGGTGCTTCGGCACCCAGTATCCTGACATTCTTTGCAC
TGGTTGTTTCTTACAGAGGTCGCAGAATCGTCTCAAGGACAAAGATCAGAGACACAACTCTGGAACGGAAGGTGCAAGGC
CGAACAATCGAACTACTGATAAGAAAATGCCGAATCTTGAAACTGCTGCTAAGAAAATGCCGAATCTTGAAACTGCTGCT
AAGAAAAGGCGCAAGACTGAAAAATAAGTGGGTGCTGCATAAATATTTCTTGCGCGTTATTTCTTCCTATGTTGTTGTAA
TTTTTAGGAGCTTTCTGTGGTTTTACTGTTTCTCTTTTGCCTTCCTTTTTTATCCAAGTGTAGTTCATGAAAGCTGAGAG
ATTAAATTGAAAGGAAAGGCGACAACTAGAAAGTGGACATCTAATCGTGCATGCAACAT-------GTTTGCTACTCCC-
--------------------------------------------------------------------------------
-------------------------GAGTAATTTGTAGGGTTTTGACACGGTTGAAGTTTCACCCTCGTATCCTCCTCAC
GATTTTTGTGT-TGCTTTGGTTCTTCATGCCTGCTTTTGGTCTTCGTGTTGCAGTTATTTGTTGGGGGAAGGCATTCTCG
GCATGAGCTTACATGCTCATGGTTGAATAGAAAACAGAACTACTTAGT-------------------TCTTTTTTTATTA
CGGAAAACATGTTTATGTCTTCTAAATGTGTGCAAAATTTTGTGAAGAGTGGAATATATTTTGAGCTTTGGAGTTCTCGT
TAGGAGACTTTAGGGTCA--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS---------S---S--------------------------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------------------------
-------SS----------------SSSS---------------------------------------------------
-----S-----------------------S--------------------------------------------------
----------------------------S--------S------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-----------S--------SS---------------
----------------------------SSSSSSS---------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
------S------S--------------------------------------------------S---------------
------------S---------------S---------------------------------------------------
----------------------------------------------------------S---------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S------------------------------------S--------
---------------------------------S----------------------------------------------
-------------------------------------------S------------------------------------
----------------------------------S-----S---------------------------------------
---------------S-----SS--------------------S-----------------------S----------S-
--------------------------------------------------------S-------S---------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-S-------S-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------SSS----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------SS-
--------S----------S------------S---S----S--------------------S---------S-------
--------------------S-----------------------------SS----------------------------
--------------------------------------------------------S-----------------------
-----------------------------------S--------------------------------------------
-----------------------------S---------------------------S----------------------
----------------------------------S-----S-SSS-----------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
S-------------------------------------------S-----------------------S-S-SSS-SSS-
------------------------------S---SSS-SSS-SSS--S--S-------------S---S-----------
S--------------------S--------S-----------------------------------------------S-
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_98
------------------------------------------------------------------------------GC
AAAGTGGTGGTGAACGAC--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>reverse_1069
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TTCGGGTTCTGATTCGGACC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_378
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CGCAAAGAAAACCAGCCCTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>reverse_2364
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CCGAACTCTCTGCAAGCAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>forward_1243
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CCGAAGATGAGGGTGAGCTG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------
>reverse_2500
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GAAGGTGCTGTTAACAAGGATGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>forward_1527
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGTCCTGCCAA
AGCCTCG-------------------------------------------------------------------------
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---------------------------------------
>reverse_3497
--------------------------------------------------------------------------------
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--------------------------------------------------------GCTCTGGAAAGGAAGGTGCA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>forward_2982
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--CTCAGGTGTTGGCACTGGTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------
>reverse_4553
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CGGTGCTC
TTGAGAGTTGGT--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
