>input_sequence_31891
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--------------------------------------------GGAATCCGCTTCGAGTTGGTTTACGTAATATCCCCA
ATACGCCTCATGAGTCATGACCGG-ATTACGGTAAATAAACCT-CTGTCTTTGCGCAGGGTCGTGGGACGGACGAA----
----------------AGAGAGAGAGGGAATCAGTCAGGGAAGGACAGAGCGAGAACACAAAACGAGACTCGGCGGCGGT
G---GCCAGGGAGAAGAAG---AAGCATGGTGTTCGGCCGGGGCAAGCCGTCCTCGTCCACGCCCTCCACGGCGGCCGCC
ACCTCGTCGGCTGCCGCGGCGGCGTGCTCCGACCTCCGGGCGGCGTACCACGAGTGCTTCAACCGGTGGTACGCCGACAA
GTTCGCCAAGGGCCAGTGGAACAAGGACGACTGCGCCGCCGACTGGCACAAGTACCGCGCCTGCCTCGAGGTAAACCTAG
CCCACGCCCCCCCT--CCACCCCCCGCCCCAACCACAGCTCGCTATCATTGCTCGCCACCTAGATTGGATCGCTGGTTTG
CTATGCGCGCGGTAGAGATCCCCCCGCCATTGACCGCCTAGTTTTCTCTGATGGGGCTCCCTGAGGTGATGTTTTCCAGA
GATATGGATTCCTGATTATGAAGATCTTGTAGTCTAGGCCGAGGTAATTCCG-----------GGGAGGTATAAATTTCG
TGTAAGATTTGGAATTGCTTGTTTAGGAAGATATTTT--GAGAGACTGTCTCGATTATGTCGCTTCTTTAATTGGGTTGG
CTTAACCGCTTAAGGTTGTTACTCTGGGGAGAATGTGAGAATCATCATAGTAGGGGGG-CTTATGGCGGTCAGTTGTTGT
GTTGCTTATGATCTTGATTTGGATTGCGCTGCAGCCCTCATGTTGCAAATGTGGGATCT---GGCCATCTTGTGCAATGA
CAGTTCAGAGCACTTA----TGGACAAGCAATGTAGGTTAACGAGGATGCTGTTTCTTGTTAATTTTTATCCACTCTTCA
ACCCAAAAAGGTTATTGCCTGAAAACAGAGGA--TATTAACCTTGTAT--CCTGTTTGAATAGTCGGAGCAGTTGAGCTT
GCAAGACTGCTAGTTCCATCGCATTTGCATGACAATGCAGTTAATTGATATCGCTGGGGAGCTCAGTCTGTAGAGAGTTC
ACCAACAACGGATTTTTTTTTTTTGGATAAAAGGCACCAAAGTAACCATCAAACCCTTCTACGATTACATCCCAGGCTAC
ACCGAAAACGGATCTTGTTAAAAACATTTGCAGTTACAGGTGTTCTTATTTTGCTTATTGGCTGCTGCTAGGTTGTTTTC
TAGGTAAGTACTCCCTCTGTCTCAAAATGTAAGACGTTTTCACTATGATAGTACCAAAAAACGTCTTGCATTTTGAGACA
GAGGGAGCATTGGTCATAACTGGTGCGATGCTGGTGATAATTTGGGACATGGTTGGTAGGCATCCTGGTTGCTTAGTGAC
TGCCAACCCACCCAAAGATCTGCTATTTCTCAGGAAAACCCACTGTTGCCAATTTCTATTGCTGAACGGACTGTCTTTTT
T-TTTCACTTGCAGAGTTGGATGTCGA---------------------------------------------TTGTTCTT
CATGACTTAATTATTTAGTGTAAATAGCAATGATGTGTATTGCATAAAATTGGTGGTTATATCAAATCGTACCAGATTGA
TGGTTCACAGCTTTGCG-TTTTTGTCTGCAGCAATTTGCCATTACTGCAAGGAAAGAAACCTTCTTAACACCCGAATGTA
TTTAATTAGTTTGTTTATAGATAAAAGTTCTCAAAAAAATATTCAAAAATCGGCCTGTGTC--TGTTATTTGCCTCTTCA
GTTGTCCATGTTGTTGTCATATATCTGTATTTTACAAGAATGATTGTTCAAAAATTGAGTTTGACGAAGTTGTGTTCATT
CACATAATCACAAAGCACTGTTGTACATAA---CAATGAGTGTTCAACATGCACCAGTACCCTGTTTTCTTCATTTCCAC
ATAAGCAATCTGTATTATCTTGCATTTCACAGCCATTTAGGTTTAGGTTCTATGATTTAATGTTGCGTGATTCTTGCTTG
TCTAATGGCTGATTGTTCCATGTTTTACTTGTGTCTAGGAACATCTCGAAGACAAGCATCTCAGGCAAATCCTACTGGAG
TCGGAAACATCTCCCTCTTATGCCCAGCTTGATCCCGATTCTTCGTCACGACAAGGTGCCACCCCATCAAAATGACAGTC
TTGGACTAACAACATGGTCGATTTCTTTCCTTGATCAAAATTCGGAGACGATTGATAGAGTGAACCAGAAAGTCTGTATT
TGGATACATGTTATGTCCCTGGATCATGTCGATTTCAGCTCATGAGATTAACTTGTAAAATTTGCTTGGATGTGATTGCA
CTCAACTTACAAAGTATACTCA------------------ACCAAGCAATAGTTTGTAAATACTGAGCAGTTCTGGATTA
TGAAATTAGTTGAATAGTATCAGCTGTCCAGGTTCTGTAACACTGTTTCACGCACGCTTCTTCTAGTCAAAGGATGGGAT
GTAGATTAAATCTTATCATTTGCTGTGAT---------------------------------------------------
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-------------------------------------------------
>chr5A_1_TraesCS5A01G194000
CAATTTTAAAGGTAATATATATGCACAAATTATTTTAAAGGTTATATATATGTGCAGCAGCAGCAATGCAGCTCGTCCCG
CTACAGTGCAGCGCGCAGCAGCTACAGTGCCGGCCACCTCAACGGGTGGTGGCATGGCCCTGCAGCAGCAGTGCGTCGCT
ACAGTGCCGCTCCCAGGGCTACAGTGTTGGCCGCCTCATCATGTGGTGGCATGGCCCACCATACCCAGCTCCGTTCCGTC
GCTGGCCTGGATTTCAGTTGCCAGGGACTGGCCGCCTGGCAGCATGGCGGCGGGGCCGGCCGCCTCGCGTCGTGGCGGCA
GGTGCCATGTGTCGCTTGGCGCGCCTGCCGCCACGGCAAGGGGGTCTCTTTTGCCAATCTGATCCAGAGGTGGTCTTTTT
TGCCATTTCGATCTGGCAGGCGGTCTCTTTTTACAAAAAATCCTATTCTGGCACGCTGGCCCTCTGGGACCTTAGCATGG
CGATTTCCCGACTGTATACTACAACAAGGTTTGTCCGGCTCCAGCGATGGAGGGGCGATGACGGCAGCGCAACTTAAGCC
GCTCCAGTGTTTTAGTCGTCGCTAGGTAGTCTATAGACGTGGATCTAAATTGTATTTCTGGTGTTCTTTATACTACCTTG
ATAGTTGATGAACAAATCAGAAGTTTTTTTTAAAAACAAAAATAATCAATTTTATTTTATGCTCAAAAAGCGAGATAAAA
CCAATGAAAAAAACAGCGCGCTACAGCAAAATAGCGGTAACCTTAGAATATGCTATTAGCGTGCTATATCGCGTTATAGT
GTGCTATTAGCGAGATGTTGTATATCGATATATTTAACGAGACAATTCTTAATACGCAATAGTGCGTTATTAGCGAGGCT
ATAGCGTGCTATTTTTTTTCAGTGAATAAAACTCAACAGTAGTTAAAAGCCACACGAGGCGTCCGTCCGAAAAACATAAT
ACAGCAGGCGTATGCAAGTTCGGGACGGCTTTGCG----AAATTGGAATCCGCTTCGAGTTGGTTTACGTAATATCCCCA
ATACGCCTCATGAGTCATGACCGG-ATTACGGTAAATAAACCT-CTGTCTTTGCGCAGGGTCGTGGGACGGACGAA----
----------------AGAGAGAGAGGGAATCAGTCAGGGAAGGACAGAGCGAGAACACAAAACGAGACTCGGCGGCGGT
G---GCCAGGGAGAAGAAG---AAGCATGGTGTTCGGCCGGGGCAAGCCGTCCTCGTCCACGCCCTCCACGGCGGCCGCC
ACCTCGTCGGCTGCCGCGGCGGCGTGCTCCGACCTCCGGGCGGCGTACCACGAGTGCTTCAACCGGTGGTACGCCGACAA
GTTCGCCAAGGGCCAGTGGAACAAGGACGACTGCGCCGCCGACTGGCACAAGTACCGCGCCTGCCTCGAGGTAAACCTAG
CCCACGCCCCCCCT--CCACCCCCCGCCCCAACCACAGCTCGCTATCATTGCTCGCCACCTAGATTGGATCGCTGGTTTG
CTATGCGCGCGGTAGAGATCCCCCCGCCATTGACCGCCTAGTTTTCTCTGATGGGGCTCCCTGAGGTGATGTTTTCCAGA
GATATGGATTCCTGATTATGAAGATCTTGTAGTCTAGGCCGAGGTAATTCCG-----------GGGAGGTATAAATTTCG
TGTAAGATTTGGAATTGCTTGTTTAGGAAGATATTTT--GAGAGACTGTCTCGATTATGTCGCTTCTTTAATTGGGTTGG
CTTAACCGCTTAAGGTTGTTACTCTGGGGAGAATGTGAGAATCATCATAGTAGGGGGG-CTTATGGCGGTCAGTTGTTGT
GTTGCTTATGATCTTGATTTGGATTGCGCTGCAGCCCTCATGTTGCAAATGTGGGATCT---GGCCATCTTGTGCAATGA
CAGTTCAGAGCACTTA----TGGACAAGCAATGTAGGTTAACGAGGATGCTGTTTCTTGTTAATTTTTATCCACTCTTCA
ACCCAAAAAGGTTATTGCCTGAAAACAGAGGA--TATTAACCTTGTAT--CCTGTTTGAATAGTCGGAGCAGTTGAGCTT
GCAAGACTGCTAGTTCCATCGCATTTGCATGACAATGCAGTTAATTGATATCGCTGGGGAGCTCAGTCTGTAGAGAGTTC
ACCAACAACGGATTTTTTTTTTTTGGATAAAAGGCACCAAAGTAACCATCAAACCCTTCTACGATTACATCCCAGGCTAC
ACCGAAAACGGATCTTGTTAAAAACATTTGCAGTTACAGGTGTTCTTATTTTGCTTATTGGCTGCTGCTAGGTTGTTTTC
TAGGTAAGTACTCCCTCTGTCTCAAAATGTAAGACGTTTTCACTATGATAGTACCAAAAAACGTCTTGCATTTTGAGACA
GAGGGAGCATTGGTCATAACTGGTGCGATGCTGGTGATAATTTGGGACATGGTTGGTAGGCATCCTGGTTGCTTAGTGAC
TGCCAACCCACCCAAAGATCTGCTATTTCTCAGGAAAACCCACTGTTGCCAATTTCTATTGCTGAACGGACTGTCTTTTT
T-TTTCACTTGCAGAGTTGGATGTCGA---------------------------------------------TTGTTCTT
CATGACTTAATTATTTAGTGTAAATAGCAATGATGTGTATTGCATAAAATTGGTGGTTATATCAAATCGTACCAGATTGA
TGGTTCACAGCTTTGCG-TTTTTGTCTGCAGCAATTTGCCATTACTGCAAGGAAAGAAACCTTCTTAACACCCGAATGTA
TTTAATTAGTTTGTTTATAGATAAAAGTTCTCAAAAAAATATTCAAAAATCGGCCTGTGTC--TGTTATTTGCCTCTTCA
GTTGTCCATGTTGTTGTCATATATCTGTATTTTACAAGAATGATTGTTCAAAAATTGAGTTTGACGAAGTTGTGTTCATT
CACATAATCACAAAGCACTGTTGTACATAA---CAATGAGTGTTCAACATGCACCAGTACCCTGTTTTCTTCATTTCCAC
ATAAGCAATCTGTATTATCTTGCATTTCACAGCCATTTAGGTTTAGGTTCTATGATTTAATGTTGCGTGATTCTTGCTTG
TCTAATGGCTGATTGTTCCATGTTTTACTTGTGTCTAGGAACATCTCGAAGACAAGCATCTCAGGCAAATCCTACTGGAG
TCGGAAACATCTCCCTCTTATGCCCAGCTTGATCCCGATTCTTCGTCACGACAAGGTGCCACCCCATCAAAATGACAGTC
TTGGACTAACAACATGGTCGATTTCTTTCCTTGATCAAAATTCGGAGACGATTGATAGAGTGAACCAGAAAGTCTGTATT
TGGATACATGTTATGTCCCTGGATCATGTCGATTTCAGCTCATGAGATTAACTTGTAAAATTTGCTTGGATGTGATTGCA
CTCAACTTACAAAGTATACTCA------------------ACCAAGCAATAGTTTGTAAATACTGAGCAGTTCTGGATTA
TGAAATTAGTTGAATAGTATCAGCTGTCCAGGTTCTGTAACACTGTTTCACGCACGCTTCTTCTAGTCAAAGGATGGGAT
GTAGATTAAATCTTATCATTTGCTGTGATGAGAAATAAGTCACAGATATTTCGAATAAGTGGACAGGGAGAGGGGGT---
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-------------------------------------------------------------------------------T
GCATAAAAGTCAAGAAATAAAAAAACCTAGATGTAGGCAATGGA----TGTAGAAATAAATCAATTGGGTACATAAATGT
CCAACTGGATCTTATATCAAAATTGGTTCTCACTTCTCCTGCATGGTGCATAAATATCCAACTGAATCTTATATCCAAAT
TTGTTCTTAACATCTTATATTATGGGAGGGAGAGAGTAGTAGGCAA----------------------------------
--------------------------------------------------------------------------------
--------------------------TCTTGTTATCGGAGGATGGCAATTCGATGCGGTT-----CTGGCTGCAAGAAAA
AAGGCTTAC-GTCCTCGACAGTGTTATGA--GTGGGTAGTGAGGTTTGACAGGTGTGCCCTTTTGTGG-----------T
GGTTTTTACCGA-GTTTCCGCAGATTAATCGAGCAACCCTCTTCTGTTTATTTAATGAATTGAAGTCC----------AT
GACTTAAAAAAAAGTACCTCATCTGTAATAAAGAAATATATTTCTTTACAGAGGGAGTAGCAAAGAGG-TGATACATGTG
TGTTGTACG---ATAGCAGCGAGGGGTGAAGA---GCCAGGCGCTCTACCTCTACTCCTCCATCCTGATGACGCAGCGCA
GGCCTTCCCCCTTGAGCATGAGGTCGAAGGCCGTGTTGATCTGCGAGAAGGGCACGCTGTGGGTGATGAACTTGTCCAGC
TCCAGCTCCTTCCTCATGTACATGTCCACCACGCCGGGGAG---------------------------------GCCCCT
CAGCGTCCTCTCGTTGAGGAAGTTCATGGGGTGGGTCTTGAACACCGCCTCCTTGTGCGCCACGCCCACCAGCACCGCCA
CCCCCCACCCCTGCTCCCATCCATCAGGCCATAGCATCAGTTTCAGGATTCAGTTTCAAGCAGAAGATGAAGAAGAAGCA
AGTGGTCATCATA----TGTACATCGTGCACGCATTCGAAGGCGGAGATCATGGCGTCGGCGTTGCCCGTGCACTCCACC
GCCCGGTCGACTCCGCCATCGGTCATCTCCACGATCACCTGTGGCATAT
>chr5B_908
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---------------------------AAAACTCAAAAGTAGTTAAAACACACACGAGGCGTCCGTCCGAAAAACATAAT
ACACCAGGCGTATGCAAGTTGGGTACGGCTTTGCGGTAGAAATTGGAATCCGCTTCGAGTAGGTTTACGTAATATCCCCA
AATACGCCTTACGAGCGGATTATTA--TACGGTAAATAAACCT-CCGTCTTTGCGCAGGATCGTGGGA----CGGA----
----------------AGAGAGAGA------------GGGAAGGACAAAGCGAGAACACAAAACGAGACTCGGCGGCGGT
GGTGGCCAGGGAGAAGCAGCACAAGGATGGTGTTCGGCCGGGGCAAGCAATCCTCGTCCACGCCCTCCCCGGCGGCCGCC
ACCTCGTCGGCTGCCGCGGCGGCCTGCTCCGACCTCCGGGCGGCGTACCACGAGTGCTTCAACCGGTGGTACGCCGACAA
GTTCGCCAAGGGCCAGTGGAACAAGGACGACTGCGCCGCCGACTGGCACAAGTACCGCGCCTGCCTCGAGGTAAACCTAG
CCCACGCCCGCCAACACCCCCCCTCGCCCCAACCACACCTCGCTATCGTTGCTTGCCGGTTAGATTGGATCACCGGTTTG
CTATGCGCGCGGTAGAGATC-CCCCACCATTGACCGCCTAGTTTTCTCTGATGGGGCTCCCTGAGGTGATATTTTCCAGA
GATATGGATTCCTGATTATGAAGATCTTATAGTTTAGGCTGAGATAATTCCAGTCCTGGGACTGGGAGGCATAAATTTCA
TGTAAGATTTGGAGTT-CTTGTTTAGGAAGATATTTGAGGAGGGACTGTCTCGGTTATGTCGCTTTTTTAACTGCGTTGG
CTTAAGGTGGGTAT--------TCTGGGGAGAATGTGAGAATCATCATAGTAGGGGGGGCTTATGGCAGTCAGGTGTTAT
GTTGCTTATGATCTTGATTTGGATTGCGCTGCGGTCCTCATGTTGCAAATGTGGGATCCGGCGGCTATTGTGTGCAATGT
CAGTTCAGAGCACTTA--TGTGGACAAGCAATGTAGGTTAACAAGGACGCTCTTTCT-----------------------
ACCCAAAAAGGTTATTGCCTAAAAACAGAGA--TTATTAACCTTGTAT--CCTGTTTGAATAGCCGGAGCGATTGAGCTT
GCAAGACTGTGCTAGTTCCGGCATTTGCATGGCAAAGCAGTTAATTGATATCGCAGGGGAGCTCAGTCTGTAGAGAGTTA
ACCAACAATGAATTTTTTTTGG-TGGATAAAAGGGGCCAAAGTAACCAGCAAACCCTTCTATGCTTACATCCCAGGCTAC
ACCAAAAACGGATCTTGTTAAAACCATTTGCAGTTACAGGTGTTCTTATTTTGCTTATTGGCTGCTGTTAGGTTGTTTTC
TAGGCA--------------------------------------------------------------------------
-----AGTATTGGTCATAACTGGTGCGATGCTGGTGAGAATTTGGGA-ATGGTTGGTAGGCATTCTGGTTGCTTACTGAC
TGCCAACCCAGCAAAAGATCTGCTATTTCTTAGGAAAACTCACTGTTGTCAATTTCTATTGCTGAACGGACTGTCTTTTT
T-TTTCACTTGCACAGTTGCAAGTCAATTGTTCTCCATGAC---------------------------------------
----------TTATATAGTGTAAATAGCAATGATGTGTGTTCTGTAAAACTGGTGGTTATATCAAATCGTACCAGATCGA
TGGTTCACAGCCTTGTGCTTTTTGTTTGCAGTAATTTGCTGTTACTGCAAGGAACAAAAACTTCTTACCACCCCAATGTA
TTTAATTAGTTTATTTATAGGG-AAAGTTCTCAC----TTTGTCAAAATTCGGTCTGTATCTGTGTTATTTACCTCTTCA
GTTGTCCATGTTGCCATATAGTATCTGTGTGTTACAAGAATGATTGTTCAGGAATTGAGTTCAACAAAGTGGTTTCAT--
-------TCACAAAGCACTGTTGTATCGCACG---ATGAGTGTTCAACATACACCAGTACCCTGTTTTCTTCACTACGAC
ATAAGCAATCTGTCGTATCTTGCATTTCAGT--CATTTAGGTTTAAATTTTGTGATTTAATGTTGCGTGTTTCTTGCTTA
TCTAATGGCTGATCGTTCCATGTTTTAATTGTTTCTAGGAACATCTCGAGGACAAGCATCTCAGGCAAATCCTACTGGAG
CCGGAAACGTCTCCCTCTTATGCCCAGCTTGATCCGGATTCTTCATCAAGACAAGGTGCCACCCCTTCAAAATGACAGTC
TTGGACTAACAACATGGTCGAGTTCTTTGCCTGATCAAAATTCGGAGACCGTTGATAGAGTGAACCACAAAGTCTGTATT
TGGATACATGTTATGTCCCTGGATCCTGTCAATTTCAGCTCATGAGATTAACTTGTAAAATTTGCTTGGATCTGACTG--
----------------TACTCA------------------ACCAGGCAATAGTTTGTAAATACTGAGCAGTTATGGATTA
TGAAATTAGTTGAATAGTATCAGCTGTCCAGGTTCTGTAACACTGTTTCACGCACGCTTCTTCCAGTCAAAGGGTGGGGT
GTAGATTAAATCTGATCATCTGCTGTGATGAGAAACAAATCACTGATATTTCGAATAAGTAGACAGGGAGAGGGGGGTTG
CAT-----------------------------------------------------------------------------
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-----AAAAACAAAAAATGG-AAAACCCAGATGTAGGCAAACGA----TGTAGAAATAAATCAATTGGTTACGTAAATGT
CCAACTGGATCTTGTATCAAAATTCGTTCTCACTTCTCCTGCATGGTGCATAAATATCCAACTGAATCTTATATCCAAAT
TTGTTCTTAACATCTTATATTATGGGACGGAGGAAGTAGGCAACAAGCAGTCCTTGTTGTAGGATGCAAATTTGTTCTTA
ACATTTTATATTATGGGACGGAGGAAGTAGGCAACAAGCAGTCTTTGTTGTAGGATGCAAATTTGTTCTTAACATCTTAT
ATTATGGGACGGAGGAAGTAAGCAGTTCTTGTTGTCGGAGGATGGCGATTCGATGCGGTTTCTTTCTGGCGGTAAGAGAA
AGGCGTACGTGTCCTCGACAGTGCGGGTCTTGTGGGTAGTGAGGTTGAACAGGTGTGCCCTTTTGTGGGCATGTTGTGAT
GGTTTTCGCCGA-GTTTTCGCAAATTAATCGAGCAACCCTCTTCTGCTTATTTAATGAATCGGAGTCCTATAAGTGGCAT
GACTTCAAAAAAAA-----------------------------------------AGTAGCAAAGAAGCTGATACATGTG
TGTTGTAGTCCAATAGCAGCGAGGGATGAAGAAGAGCCAGGGGCTCTACCTCTACTCCTCCATCCTGATGACGCAGCGCA
GGCCTTCCCCCTTGAGCATGAGGTCGAAGGCCGTGTTGATCTGCGAGAAGGGCACGCTGTGGGTGATGAACTTGTCCAGC
TCCAGCTCCTTCCTCATGTACATGTCCACGACCCCGGGGAGGCCGGTGCGCGGCTTGTAGTTGCCGAAGAAGGTGCCCCT
CAGCGTCCTCTCGTTGAGGAAGTTCATGGGGTGCGTCTTGAACACCGCCTCCTTGTGCGCCACCCCCACCAGCACCGCCA
CGCCCCACCCCTGCTCCCGTCCATCAGGCCATAGTGTTAGTGTCAGGATTCAGTTTCAAGCAGCAGAAGAAG---GAGCA
AGTGATCATCATA----TGTACATCGTGCACGCATTCGAAGGCGGAGATCATGGCGTCGGCGTTGCCCGTGCACTCCACG
GCCCGGTCGACCCCGCCGTCGGTCATCTCCACGATCACCTGCGGCGTAT
>chr5D_908
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---------------------------AAAACTCAAAAGTAGTTAAAACACACACGAGGCGTCCGTCCGAAAAACATAAT
ACACCAGGCGTATGCAAGTTCGGTACGGCTTTGCGGTAGAAATTGGAATCCGCTTCGAGTAGGTTTACGTAATATCCCCA
AATACGCCTTACGACCGGATTATATATTACGGTAATAAATAAACCTGTCTTTGCGCAGGGTCGTGGGACGGGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGGGAATCAGTCAGGGAAGGACAGAGCGAGAACACAAAACGAGACTCGGCGGCGGT
G---GCCAGGGAGAAGCAGCACAAGGATGGTGTTCGGCCGGGGCAAGC------------CGTCCTCTCCGGCGGCCGCC
ACCTCGTCGGCCGCCGCGGCGGCGTGCTCCGAGCTCCGGGCGGCGTACCACGAGTGCTTCAACCGGTGGTACGCCGACAA
GTTCGCCAAGGGCCAGTGGAACAAGGACGACTGCGCCGCCGACTGGCACAAGTACCGCGCCTGCCTCGAGGTAAACCTAG
CCCACGCCCGGCAT--CCCTCCCTCCCCCCAACCGCTCCTCGCTATCATTGCTTGGCACTTAGATTGGATCATCGGTTTG
CGATGCGCGCGCGGTAGAGATCCCCGCCATTGACCACCTAGTTTTCTCTAATGGGGATCCCTGAGGTGATGTTTTCCAGA
TATATGAATTCCTGATTATGAAGATCTTGTATCTTAGGCCGAGATAACTCCA-----------GGGAGGTATAAATTTCA
TGTAAGATTTGGAATAGCTTGTTTAGGAAGATATTTT--GAGGGACTGTCACGATTATGTCGCTTCTTTGACTGGATTGG
CCT-AGGTGGGTAT--------TCTGGGGAGAATGTGAGAATCATCATAGTAGAA-GGGCTTATGGCGGTCAGGTGTTAT
GTTGCTTATGATCTCGATT--------------------ATGTTGCAAATGTGGGATCT---GGCAATCGTGTGCAATGG
CAGTCCAGAGCACCTATGTGTGGACAAGCAATGTAGGTTAACGAGGATGCTGTTTCTTGTTAATTGTTATCCACTCTTCA
ACCCAAAAAGGTTATTGCCTAAAAAAACACGAGTTATTAACCTTGTATATCCTCTCTAAATAGTCGGAGCAATTGAGCTT
GCAAGACTGCCAGTTCCATCACATTTGCATGACAAAGCAGTTAATTGACATCACAGGGGAGCTCAGTCTGTAGAGAGTTA
ACCAACAATGGATTTTTGTTTTTTGGATAAAAGGGGAGCTCAGAC-----------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGATAGTATCAAAAAACG-CTTACATTTTGAGACA
GAGGGAGTATTGGTCATAACTGGTGCGATACTGGTGATAATTTGTGACATGGTTGGCAGGCATTCTGGTTGCTTAGTGAC
TGCCAACCCACCCAA--------TATTTCTCAGGAAAACTCACTGTTGTCAATTTCTATTGCTGAACGGACTGTCTTTTT
TATTTCACTTGCAGAGTTGGAAGTCAATTGCCTACCCCAACTTGTTTGTTTGTTTGTAGAGTTGGAAGTCAGTTGTTCTT
CATGACTTAATTATATAGTGCAAATAGCAATGCCGTGTATTCAGTAAAACTGGTGGTTATATCAAATCGTACCAGATCAA
TAGTTCACAGCTTTGTG-TTTTTGTTTGCAGCAATTTGCCATTACTGCAAGGAATGAAACCTTCTGAACACCCTAATGTA
TTTAATTATTTTATTTATAGATAAAAGGTGTCTTATTTTTTTTCAAAATTCGGCCTGTGTCTGTGTTATTTGCCTCTTCA
GTTGTCCATGTTGTTGTCATATATCTGTATTTTACAAGAATGATTGTTCAAAAATTGAGTTCAAAGAAGTTATGTTCATT
CACATAATCACAAAGCACTGTTGTACTATCACGCAATGAGTGTTCAACATGCACCAGTACCCTTTTTTCTTCATTTCCAC
ATAAGCAATCTGTCTAATCTTGCATTTCACAGCCCTTTAGGTTTAGATTCTATGATTTAATGTTGCGTGTTTCTTGCTTG
TCTAATGGCTGATCATTCCACATTTTAATTGTTTCTAGGAACATCTCGAAGACAAGCATCTCAGGCAAATCCTACTGGAG
TCGGAAACGTCTCCGTCTTATGCCCAGCTTGATCCCGATTCTTCGTCGCGACAAGGTGCCACCCCATCAAAATGACAGCC
TTGGACTAACAACATGGTCGATTTCTTTCCTTGATCAAAATTCGGAGACGATTGATAGAGTGAGCCACAAAGTCTGTATT
TGGATACATGTTATGTCCCTGGATCATGTCGATTTCAGCTCATGAGATTAACTTGTAAAATTTGCTTGGATCTGATTG--
----------------TACTCATCTTACAAAGTATACTCAACCGAGCAATAGTTTGTAAATACTGAGCAGTTCTGGATTA
TGAAATTAGTTGAATAGTATCAGCTGTCCAGGTTTTGTAACACGGTTTCACGCACGCTTCTTCTAGTCAAAGGATGAGAT
GTAGATTAAATCTGATCATCTGCTGTGATGAGAAATAAGTCACTGATATTTCGAATAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCATAAAAATCAAGAAATAA-AAAACCCAGATGTAGGCGAACGAACTATGTTGAAATAAATTGATTGGGTACATAAATTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GGTTTTCACTTGGGTTTCCGCAAATTAATCGAGCAACCTTCTTCTGTTTATTTCATGAACCGGAGTCC--TAAGGGGCGT
GGCTTAAAAAAAAG-----------------------------------------GTAAGCAAAGAGG-TAATACATGTG
TGTTGTAGTGCAATAGCAGCGAGGGATGAAGAAGAGCCAGGTGCTCTAC-TCTACTCATCCATCCTGATGACGCAGCGCA
GGCCTTCCCCCTTGAGCATGAGGTCGAAGGCCGTGTTGATCTGCGAGAAGGGCACGCTGTGGGTGATGAACTTGTCCAGC
TCCAGCTCCTTCCTCATGTACATGTCGACGACGCCTGGGAGGTCGGTGCGCGGCTTGTAGTTGCCGAAGAAGGTGCCCCT
CAGCGTCCTCTCGTTGAGGAAGTTCATGGGGTGGGTCTTGAACACCGCCTCCTTGTGCGCCACGCCCACCAGCACCGCCA
CGCCCCACCCCTGCTCCC----ATCAGGCCATAGCATTAGCCTCAGGATTCAGTTTCAAGCAGAA------GAAGGAGCA
AGTGATCATCATATGTATGTACATCGTGCACGCATTCGAAGGCGGAGATCATGGCGTCGGCGTTGCCAGTGCACTCCACC
GCCCGGTCGACTCCGCCGTCGGTCATCTCCACGATCACCTGTGGCGTAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------SS------------------------------
---S-------------------S------------------------------------S-------------------
-SSSSS-SSSSSSSS-SSSSSSSS-----------------------------------------------S--------
--------------------------------------------------------------------------------
----------------S--------S----------------------SS------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------S--S-----S----S-------------S---------------S-----S-----------S-S------
--------------------S-----------------------------------------------------------
---------------------------------S---------S-------S---------------------------S
------------------------------------------S----------------------------S--------
-----SSSSSSS-SSSSSSSSS---------------------------------------------------S----S-
--------------------------------S-S------------------------------S---S---------S
-----------------------------------------------------------------S--------------
--------------------S--------------------------------------------------S--------
----------S------------------------S------------------S------------------------S
--------S-------------------------SS------------S------------S-S----------------
---S-------------------S-------------------------------------------S------------
----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------S---S------------
-------S-------------------------------------------------------S----------------
---------------------------------------S--------S-------------------------------
---------------------S---S------------------------------------------------------
--------------S--------------------------SSS-----S---------------------------S--
---------------S---------S----------------------------S------------------S------
------------S--------------------S-SSSS-S-------S-------------------------------
-------------------------------------------------------------SS-----------------
--------------------------SSS---------------------------------------------------
-------------S--------------------------------S----------------------S----------
-------------S-------------S----S-----------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------------------------S------------
-----------------------------------------------------------------------S------SS
SSSSSSSSSSSSSSSS----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-----S-----------------------S----------------S---------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------S------S------------SS--------------------------------------
-------------S----------S-------------------------------------------------------
---------------------------S----SS-----SSSS-------------------------------------
--------------------------------------------------------------------------------
---------------------------------S------------S-----------------------S-S----S--
-S-SS-SSS--------------SSSSSS-----------------SS--------------------------------
------S---------------S-------------------------------------S-S-----------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-------SS----------------S---------------S--------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-S----------------S------------------S---S-------------------------S-------S----
----S---------------------------------------------------------------------------
-----------------S---------------------------S---
>forward_189
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CTCCCAGGGCTACAGTGTTG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_1634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CTAGGCCGAGGTAATTCCGG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_889
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTAGCGAGGCT
ATAGCGTGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_2718
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGA
TGGTTCACAGCTTTGCG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_892
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GCGAGGCT
ATAGCGTGCTAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_2746
--------------------------------------------------------------------------------
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-------------------------CTGCAGCAATTTGCCATTACTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_1062
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--ACGCCTCATGAGTCATGACC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_2849
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------ATCGGCCTGTGTCTGTTATTTG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_1226
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GGCCAGGGAGAAGAAGAAGC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_3209
--------------------------------------------------------------------------------
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--------ATCTCCCTCTTATGCCCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------
>forward_1514
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------GCCACCTAGATTGGATCGCT------
--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_3432
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTGATTGCA
CTCAACTTACAAAGT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>forward_1873
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTGATTTGGATTGCGCTGCA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------
>reverse_4404
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GCTTACGTCCTCGACAGTGT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
