>input_sequence_31742
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----------------------------------------ATGGAGGCCACCCCGATCTCCGTCAAGCCCCCCTCGCCGC
CCCC------GCCCCCGCCCCCGCGCCCGCACCTCACGGCGGCGGTGCCCCTCTCGGCCATGGAGCCCCCGCCCTCGCCG
CCGCCGGCCGTGGCGGCGGCCCCGGAGGGCCCCGAGGCGCTGCCGGATCCCACCAGCATGAACCAGCTCGCGCTCGCCAC
CACGCCCAAGAGGTGAGGTCCCCCC-GCCCCGTGCCCGGCCGTGCGTTGCCGTTCCCCGGTTCCGGCGTCTCGCCGG---
------------CTGATCTGACTGAGGCGGGCGTTTGTTTTTTGGGCAGGCAGAAGGTGGAGGACGCCGCGGATGGGTGC
AAGCATTGCGCCTGCAAAAAGTCCAGATGCCTGAAGCTGTGAGTGAGCACTCCCCCTGTCCCTCCCGATTACGCCGCGAT
TTCGCCGCCGGGCCCTAGGATGTGCCCTGTTTCGCCTGCTCTGCGTCGGGTTTCT--------TAGACAGGGACGGCCGA
TTTTGAAATGTTGGGTGCCCTGCGGTTCCGCTGCTCAGATTCGCTTCCGTTTAGGTGCTGGAGAGGGGCATCTGCGCGAG
GGCGGGATGGTTTA---ATCCTGTCTAATTTGATATCATATCCTGGTCACATATCTGCTTCAGTTTCAAAAATCCCTTCG
G--TGCTGGGTTCTCTAGTGAACTGGTAGCTGGTAGCACCTTGCCTCTCGTAGTATGCAGTGAAAAATTCAGGAAATTAT
TCTCCTGATATATGTGCTTGCTGCAGAGGTTCCCAAATTCAGAATTAGTTTTTCATGATGGGGAGTGCATCACTTGTTTT
AGCATTCGTTTGTGCGCTATTT-------ACTACGATTCCGCTTCGTAAGTTACCTCAGTCCCTCCTTTGAAACATAGCT
CATGGAGCAGCTTAGATATGTGTGGCTGGACTAACCAGCTTATAATGTGTTCCCGTAGATAGATAAAAAACGATTCGAGA
TCTTGCTATGGAAGTGTTTTAGGATTCCAAGTCAATTTTTATCTACTGGGACACATTATATTGGTGAAAACGTTTATCAG
TATATGATGATTTGTTTAAATGTGGATGGGTTCCTA-------GCCCAGTGCCCCAGTGGTGGGAGTGCAGTGGCACATT
TGCGCCCGGCGCGGATTCTATCCCAGTGGATGTCATTTAACCATCCTGGTTAATATCGCGGGATTGAACTTGTGTCTCAC
GAAATTCCTTCTTAATTAAAGAGCCGCAGGGGCTCCTCCCCCTGCTGGTCTAGTTTTTTCTTTAATGATCGGTTTAAATG
AAATCATATCTATACATGCCTGTATCTGCCGATA-TCTTTTTTATGAACTAGGATTTGTAACAATGCTCTGATGAACCAT
TAACATAAATCATGATTATCTACGTATGCAGGTATTGTCCATGTTTTGCCGGTGGAGGTTATTGTTCTGAAAAATGTGGA
TGTGTGCCATGTTTCAACAAGGCTGATTTTGCAGAGACAGTTCAGACCACTCGCAAGGTGCTACTTTCACGTCAGAAACG
GATGTCTCTGAAAATTAATAGAAGACTGGAGGCTAATGCTGAAACTATGGTTGTTTTCTTGACTCAGTTAGACGATGATG
CATTTTTTTTAAGTTCCCTTTGGCTCATAATAATAATTTCCATACTATGTCTTTGTCACCTGCAGGAAGACGCACACAAT
TCTTCTTCTTCAACCCCACCAAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCA
GGTTCCATCTTAGCTCCAAACACTTTACTATATCTTTGGGCTACAAATTTGTTCTCAAGTTGATTCGTGTGAACAGGATG
GGACTGGATGCTCCTTATTTTGTAGATGCGAGGATTGCAAGAATCCTTATGGGAAAAATGGTTAGTACGGAATGCTTGTG
ATAATTTCCCCTTTCAATGAAACCTGTGTAAATATCCCCTTGTGCAAGATCATCGTGTGCTGGCTAATTACTGTCTCTCC
TGCTGCAGAAGGTTTTATGGCGGACGAAAGCAAACGTTTTATATACACCGGTGCGGATCTGGACCACAGCGAGGACGAGC
ACGACTTCATCGTGGAGCGCTCGCCTCGCCTGCAATCACCCATCTCAAAGGAGTCCTCTTTCCAGCACACCCCGCCTCGC
AGCAAGGCCTCGAGCAGAGACACGCACCTGCTGCCGCAGGTGCTGTCGCAGTGGCAGCCGCGCTCATGGCAGCAGTCCTC
GAAGAGGCAGGGCAACGACCACCGGGCGGTCGACGACTCGGGGGACAACCACAAGAGCTCGAGCCACGAGTGGCAGCTGG
CGAAGCACCAGGTGCAGGAGGACGCCTACAGCATCTCGCGGTGCGTCCAGATCCTGAACGGCATGGTGGAGCTGTCGCAG
GTGGAGAAGTCGGTGGCCCCCGACGTGTTCCTGCAGCCGGGCAACCGGGAGATATTCGTCTCCCTGGGGCTTGACGTGCG
CGCCCTGTGGCTCAAGCGCAAGATCCAGCACCTGACTTAG----------------------------------------
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>chr1D_1_TraesCS1D01G329200
AAAGCAAAGCTGACGTGTTTCAGCTAATCGTATCTACAACCAGCACGACACATAGTAAATTGAAATGCTTCAGAGTATAT
AACAACGAGAGAATACCAGGTATCCGCACAAATTTACATTTAATAAACATATTGTCACAACCCTAGAAATTGCTTGTAAA
TAGTTGCATCAGAGAGCATCATGCATCATGTTAAATTCAAGAAATTTGAATTGATGAATATTTGGAAGCCTAAAAAAAAT
TAAATGAAGGGCAAAGGACCCGAAAAATTGCATTCAGTGTTCCACAATGCCTTTCAAATAGTTCTGAGAATTTTGGCAAG
AGCTATATATCAAACCAAAATTTAGGAACATTTTAAGAAATTATTTTGGGACTCTGAATTTAAACCTTATTTAGGGTTCT
TAGCCCTTCATTTAATTTTTTAATTCCTTAAATCAAATTGAATCGAAAGAAATTATGAGACGGAGACGCTCTTATATTAT
GTGACGGAGGAAGTAGTAGATTGGATTCGGTGCACTCTAGTTAACCGCATCGTCAGTTACAAGTATCCGCTTCATATAAC
ACGGTAGTAAAACAGAATTCGTGTGTCACAGTATAACGGCAACAATGAGGTTTAGAGTAGTTTATGTCGAATTTCAAACA
CCTTCCAACCGCGACGCCTAAATCCGAGATCCTAATAAAAAAAACCACAAACCACATCGGATTCAAATCTCAAACCCTCC
CCAAACCAAAAAAAATCTCCTCCTAGCCACCAACCCCCACCCATCCATCCATCAAAAAGGCGTCCAAAACGAAACTGCCC
CGGATTTCGTTCGAAACCGTAAAACCTTTTCCAGAAACCACCAAAAAACCACAAAACAAAACAAAAACCCCGCAGGGACA
GGGAGGCTCCTGGCTCTTCAAGAGGGGAGGGCCCCGCGCCACAGTCTCAAAAGAGCCCGAGCCACCCTCCTGCCCCCAGC
CGGACCCCGCGTGTGCCCTCGTTCGCCCCGTGCTCCTCCCATGGAGGCCACCCCGATCTCCGTCAAGCCCCCCTCGCCGC
CCCC------GCCCCCGCCCCCGCGCCCGCACCTCACGGCGGCGGTGCCCCTCTCGGCCATGGAGCCCCCGCCCTCGCCG
CCGCCGGCCGTGGCGGCGGCCCCGGAGGGCCCCGAGGCGCTGCCGGATCCCACCAGCATGAACCAGCTCGCGCTCGCCAC
CACGCCCAAGAGGTGAGGTCCCCCC-GCCCCGTGCCCGGCCGTGCGTTGCCGTTCCCCGGTTCCGGCGTCTCGCCGG---
------------CTGATCTGACTGAGGCGGGCGTTTGTTTTTTGGGCAGGCAGAAGGTGGAGGACGCCGCGGATGGGTGC
AAGCATTGCGCCTGCAAAAAGTCCAGATGCCTGAAGCTGTGAGTGAGCACTCCCCCTGTCCCTCCCGATTACGCCGCGAT
TTCGCCGCCGGGCCCTAGGATGTGCCCTGTTTCGCCTGCTCTGCGTCGGGTTTCT--------TAGACAGGGACGGCCGA
TTTTGAAATGTTGGGTGCCCTGCGGTTCCGCTGCTCAGATTCGCTTCCGTTTAGGTGCTGGAGAGGGGCATCTGCGCGAG
GGCGGGATGGTTTA---ATCCTGTCTAATTTGATATCATATCCTGGTCACATATCTGCTTCAGTTTCAAAAATCCCTTCG
G--TGCTGGGTTCTCTAGTGAACTGGTAGCTGGTAGCACCTTGCCTCTCGTAGTATGCAGTGAAAAATTCAGGAAATTAT
TCTCCTGATATATGTGCTTGCTGCAGAGGTTCCCAAATTCAGAATTAGTTTTTCATGATGGGGAGTGCATCACTTGTTTT
AGCATTCGTTTGTGCGCTATTT-------ACTACGATTCCGCTTCGTAAGTTACCTCAGTCCCTCCTTTGAAACATAGCT
CATGGAGCAGCTTAGATATGTGTGGCTGGACTAACCAGCTTATAATGTGTTCCCGTAGATAGATAAAAAACGATTCGAGA
TCTTGCTATGGAAGTGTTTTAGGATTCCAAGTCAATTTTTATCTACTGGGACACATTATATTGGTGAAAACGTTTATCAG
TATATGATGATTTGTTTAAATGTGGATGGGTTCCTA-------GCCCAGTGCCCCAGTGGTGGGAGTGCAGTGGCACATT
TGCGCCCGGCGCGGATTCTATCCCAGTGGATGTCATTTAACCATCCTGGTTAATATCGCGGGATTGAACTTGTGTCTCAC
GAAATTCCTTCTTAATTAAAGAGCCGCAGGGGCTCCTCCCCCTGCTGGTCTAGTTTTTTCTTTAATGATCGGTTTAAATG
AAATCATATCTATACATGCCTGTATCTGCCGATA-TCTTTTTTATGAACTAGGATTTGTAACAATGCTCTGATGAACCAT
TAACATAAATCATGATTATCTACGTATGCAGGTATTGTCCATGTTTTGCCGGTGGAGGTTATTGTTCTGAAAAATGTGGA
TGTGTGCCATGTTTCAACAAGGCTGATTTTGCAGAGACAGTTCAGACCACTCGCAAGGTGCTACTTTCACGTCAGAAACG
GATGTCTCTGAAAATTAATAGAAGACTGGAGGCTAATGCTGAAACTATGGTTGTTTTCTTGACTCAGTTAGACGATGATG
CATTTTTTTTAAGTTCCCTTTGGCTCATAATAATAATTTCCATACTATGTCTTTGTCACCTGCAGGAAGACGCACACAAT
TCTTCTTCTTCAACCCCACCAAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCA
GGTTCCATCTTAGCTCCAAACACTTTACTATATCTTTGGGCTACAAATTTGTTCTCAAGTTGATTCGTGTGAACAGGATG
GGACTGGATGCTCCTTATTTTGTAGATGCGAGGATTGCAAGAATCCTTATGGGAAAAATGGTTAGTACGGAATGCTTGTG
ATAATTTCCCCTTTCAATGAAACCTGTGTAAATATCCCCTTGTGCAAGATCATCGTGTGCTGGCTAATTACTGTCTCTCC
TGCTGCAGAAGGTTTTATGGCGGACGAAAGCAAACGTTTTATATACACCGGTGCGGATCTGGACCACAGCGAGGACGAGC
ACGACTTCATCGTGGAGCGCTCGCCTCGCCTGCAATCACCCATCTCAAAGGAGTCCTCTTTCCAGCACACCCCGCCTCGC
AGCAAGGCCTCGAGCAGAGACACGCACCTGCTGCCGCAGGTGCTGTCGCAGTGGCAGCCGCGCTCATGGCAGCAGTCCTC
GAAGAGGCAGGGCAACGACCACCGGGCGGTCGACGACTCGGGGGACAACCACAAGAGCTCGAGCCACGAGTGGCAGCTGG
CGAAGCACCAGGTGCAGGAGGACGCCTACAGCATCTCGCGGTGCGTCCAGATCCTGAACGGCATGGTGGAGCTGTCGCAG
GTGGAGAAGTCGGTGGCCCCCGACGTGTTCCTGCAGCCGGGCAACCGGGAGATATTCGTCTCCCTGGGGCTTGACGTGCG
CGCCCTGTGGCTCAAGCGCAAGATCCAGCACCTGACTTAGGGCAGCGT--TTTTTTTCTCTAG------TGTTGTTGG--
CCTCCGGGTGGGAGGT--GGGGGGAGCATTGGATGTTGCGTTTATAGATGATGATGGTGATGCATGGATGCCCTGCTGGC
CGGCTGAAATTCGCAGGATGCTTAGGG--TTTTTTCTTGTATACTGAGATGTGTATCCCGGATCTGCACCGCCTGTCGTT
GTAGAGAGCTTAGCGGCTGAGTACCTGGCGACATGTTGCAATAATTGATGATTTGTTATTATGCACCTG----TAGCTAA
TG---TGATGTGCCTGAGATGAGATGCTGTCTGGAATTGCAAGTTCTCCGTATGGAACAGGTTATCTCCAGCAGAAATAG
GGGATCGGAATTGGTATTTCTCTTACTCCCTTTCTTCATTTTGTAAGTCATTTGATACAACTGAAATTTAACTGTTTTAG
ATTTCATTTGATACAACTGAAATTGAACTGTTTTAGATATTGTCTAAAACGTCTTACAAAAGCGAACGGAGGGAGTACAA
CGGTGGAATATATGCGTCAAACAGAGCTAGGA------------------------------------------------
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--------------ATATTCTCGTGGTCCGGCAGGGTCCTAGGAATATCTAGGAGAGTTCCTGGCCTCTATCCCAAAAAA
GAATTTGCTCCCTCCGATTTAAATTCAAT---------------------------------------------------
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--------TAATTTGGATT-GGACGGAGTGTGTGAATTGTA-ACAGGATGTGTACTAGGAATGTCCTTTTCTC--GTGTA
TCAAGCAGGGCCTGGAGTCCCATGCAAAAAAGAGGGCCTGGAGTTCCAGAGGTCCACCTATCGAGACCAGACCATGCAGC
GTTTCAGAGGTCCGGGAGTCTGGCCACCATGGAGCGTTTCAGAGGTCCAGGCGTCAGTCCAGGA----------------
------------------------GAACCAAAATAAGCAGGAAACTTCAAATGCAAAACAAAATGATGGGGAAGCAATGA
ATCATCTAGCAAAACCTCAGCTTCGTCGAGGTAACCAACGCAGCACGATTTTATATCTCGATTTCATTACAGAGGT--CA
TAATA-GGTCATACGAGCTTTATTACGGC
>chr1A_680
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---------------------------------------AAAACCCACAAACCACATCGGATTCAAATCTCAAACCCTGC
CCAAACCAAAAAAATCTCCTCTG--GCCACCAACCCCCACCCATCCATCCATCAAAAAGGAGTCCG-AACGAAACTGCCC
CGGATTTCGTTCGAAACCGTAAAACCTTTTCCAGAAACCACCAAAAAAACC----ACAAAACAAAAACCCCGCAGGGACA
GGGAGGCTCCTGGCTCTTCA--AGGCGGGGGCCCCGCGCCACAGACTCAAAAGAG-CCGAGCCACCCTCCTGCCCCCAGC
CGGACCCCGCGTGTGCCCTCGTTCGCCCCGTGCTCCGCCCATGGAGGCCACCCCGATCTCCGTCAAGCCCCCCTCGCCGC
CCCC------GCCCCCGCCCCC------GCACCTCACGGCGGCGGTGCCCCTCTCGGCCGTGGAGCCCCCGCCCTCGCCG
CCGCCGGCCGTGGCGGCGGCCCCGGAGGGCCCCGACGCGCTGCCGGATCCCACCAGCATGAACCAGCTCGCGCTCGCCAC
CACGCCCAAGAGGTGAGGTCCCCCCCGCCCCGGCC----CCGTGCGTCTCCGTTCCCCGGTTCCGGCGTCTCGCCGGGGG
TTATCCGGCCGGCTGATCTGACTGAGGCGGACGTTTGTTGTTTGAGCAGGCAGAAGCTGGAGGACGCCGCGGATGGGTGC
AAGCATTGCGCCTGCAAAAAGTCCAGATGCCTGAAGCTGTA----AGCAGCCCCCCTGTCCCTCCC-----------GAT
TTCGCCGCCGGGCCCTAGGATGTGCCCTGTTTCGCCTCCGGTGCT---------TCGGGTTTCTAGACAGGGACGGCCAA
TTTTGAAATGTTGGGTGCCGTGCGGTTTCGCTGCTCAGATTTGCTTCCGTTTAGGTGCTAGAGAGGGGCATCTGCGCGAG
GGTGGGATGGTTTAATCATCCTGTCTAATTTGA-----TATCCTGGTCACATATCTGCTTCAGTTTCAAAAATCCCTTTG
GTATGCTGGGTTCTCTAGTGAACTC-------GTAGCAGCTTGCCTCTCGTAGCATGCAGTGAGAAATTAAGGAAATTAT
TTTCCTGATATATGTGCTTGCTGCAGAGGTTCCCAAATTCAGAATTAGTTTTTCATGATGGGGAGTGCATCACTTGTTTT
AGCATTCGTTTGTGCGCTATTTGATTAT-ACTGCGATTCCGCTTCCTAAGTTACCTCAATTCCTCCTTTGAAACATAGCT
CATGGAGCAGATTATATCTGTGTGGCCAGACTAAGCAGCTTATAATGTGTTCCAGTAGATA----AAAAATGACTC-AGA
TTTTGCTATCGAAGTGTTTTAGAATCCCAAGTCGTTTCTCATCTACTGGGACACATTATATTGGTGAAAATGTTTATCAG
TATATGATGATTAGTTTAAATGTGGATGGTTTCCTA-------GCCC-------CAGTGGTGGGAGTGCAGTGGCGCATT
CCCGCC-GGCGCGGGTTTGATCCCAGTGGCCGTCATTTAACCATCCTGGTTAATATCACGGTATTGGACGTGTGTCTCAC
AAAATTC---CTTAATTAAAAAACCACAGGGGCTCCTCCCCCTGCTGGTCTAATTTTTTCTTTAATGATTAGTTTAAATG
AAATCGTATCTATACA----TGTATGTGCCGATA-T-TTTTTTATGAGCTAAGATTTGTAAC-----------GAACTAT
TAACATAAATCATGATTATCTGCGTATGCAGGTATTGTCCATGTTTTGCTGGTGGAGGTTATTGTTCTGAAAAATGTGGA
TGCGTGCCATGTTTCAACAAGTCTGATTTTGCAGAGACAGTTCAGACCACTCGCAAGGTGCTACTTTCACGTCAGAAACG
GATGTCTCTGAAAATTAATAGAAGACTGGAGGCTAATGCTGAAACTATGGTTGTTTTCTTGACTCAGTTAGACGATGTTG
CATTTTC--TAAGTTCCCTTTGGCTCATAACAATAATTTCCATACTATGTCTTTGTCACCTGCAGGAAGATGCACACAAT
TCTTCTTCTTCAACTCCACCAAGGCGAGGTTGCAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCA
GGTTCCATCTTAGCTCCAAACACTTTACTATATCTTTCGGGTGCAAATTTATTCTCAAGTTGATTCGTGTGAACAGGATG
GGACTGGATGCTCCTTATTTTGTCGATGCGAGGATTGCAAGAATCCTTATGGGAAAAATGGTAAGTACGGAGTGCTTGTG
ATGATTTCGTTCTTCAGTGAAACCTGTGTAAATATCCCCTTGTGCAATATCATCGTTTGCTGGCTAATGACTGTCTCTCC
TACTGCAGAAGGTTTTATGGCGGACGAAAGCAAGCGTTTTATATACACCGGTGCGGATCTGGACCATAGCGAGGACGAAC
ACGACTTTGTCGTGGAGCGTTCGCCTCGCCTGCAATCGCCCATCTCAAAGGAGTCCTCTTTCCAACACACCCCGCCTCGC
AGCAAGGCCTCGAGCAGAGACACGCACCTGCTGCCGCAGGTGCTGTCGCAGTGGCAGCCGCGCTCATGGCAGCTGTCCTT
GAAGAGGCAGGGCAACGACCACCGGGCGGTCGACGACTCGGGAGAGAACCACAAGAGCTCGAGCCACGAGTGGCAGCTGG
CGAAGCACCAGGTCCAGGAGGACGCCTACAGCATCTCGCGGTGCGTCCAGATCCTGAACGGCATGGTGGAGCTGTCGCAG
GTGGAGAAGTCGGTGGCCCCCGACGTGTTCCTGCAGCCGGGCAACCGGGAGATATTCGTCTCCCTGGGGCTCGACGTCCG
CGCCCTGTGGCTCAAGCGCAAGATCCAGCACCTGACTTAGGGCAGCAGTGTTTTTTTCTCTAG------TGTTGTTGGGG
CCTCCGGGTGAGGTTTGA-GGGGGAGCATTGGATGTTGCGTTTATAGATGATGATGGTG----ATGGATGCCCTGCTGGC
CGATTGGAATTCGCAGGATGTTTAGGG---TTTTTCCTGTATACTGAGATGTGTATCCCGGATCTGCACCGCCTGTCGTT
GTAGAGAGCTTAGCGGCTGAGTACCTGGTGACATGTTGCAATAATTGATGATTTGTTATTATGCACCTGTATTTAGCTAA
TGTGATGTTGTGTCTGAGATGAAATGCTGTCTAGAGTTG-AAGTTCTCCGTACGAAACA---------------------
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---TGGAATATATGCGTCAAACAGAGCTAGGA------------------------------------------------
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--------------ATATTCTCGTGGTCTGGCAGGGTCCTATGAAAATATAGGAGAGTTGTTG-----------------
GAATGTACTCCCTCCAATCCAAATTAATTGACAAAATGAAAATCTAGAAGAGTTCTTGGCTCCTATCCAAATGTACTCCC
TTCAATCCAAATTAATTGACACAGTACAAAGTTGTTGTACCAAAGCTGCTGCGTCAATTACTCCCTCCGTCTCATAGTCT
CATAATATAAGAGCATACTCCCTCCGTCTCATAATATAAGAACATTTATTATGAAGAATAATAAGAACGTTTATTATGAG
AGAGGGAGTAGTTTGGATC-AGAGGGAGTATAAGAATTGTATACAGAAAGTGTACATGGAATGTCCTTTCCTC--GTGTA
TCAAAC--------------------------AGGGCCTGGAGTTCCTGTGGATCACCTATCGACACCAG----------
-------------------------ACCATGGAACGTTTCAGAGGTCCAGGCGTCCGTGGCCGGACCAAGTCCAGCAGAA
TCGAAATAAAACAACGAAAAACAGAACCGAG-ATAAGCAGGAAGCTTAAAATGCAAAACAAAATGATGGGGAATCATCGA
ATCATCCAGCAAAACCTCAGCCTCGTCGAGGTAACCAACACAGCACGATTTTATATCTCGATTTCATTACAGAGGT--CA
TAATAGGGTTATACAAGCTTTATTGCGGC
>chr1B_769
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------------------------------------------------CCACCAAAAAGGCGTCCA-AACGAAACTGCCC
CGGATTTAGTTCGAAACCGTAAAACCTTTTCTCA-------CAAACCACCAAAAACCAAAAACAAAACCCCCGGA-----
-GGAGGCCCCTGGCTCTTCA--AGACGGGGGCCCCGCGC-ACAGTCTCAAAAGAG-CCCAAGCCACCTCCTGCCCCCAGC
CGGACCCCGCGTGTGCCCTCGTTCGCCCCGTGCTCCTCCCATGGAGGCCACCCCGATCTCCGTCAAGCCCCCCTCGCCGG
CCCCGCCCCAGCCCCCGCACCC------GCACCTCACGGCGGCGGTGCCCCTCTCGGCCATGGAGCCCCCGCCCTCGCCG
CCCCCGGCGGTGGCGGCGGCGGCGGAGGGGCCCGACGCGCTGCCGGATCCCGGCAGCATGAACCAGCTCGCGCTCGCCAC
CACGCCCAAGAGGTGAGCTCCCCCC-GCCCCGGCC----CCGTGCGTCCCCGTTCCCCGTTTCCGGCGCCTC--------
-------GCCGGCTGATCTGACTGAGGCGGGCGTTTGTTGTTTGAGCAGGCAGAAGGTGGAGGACGCCGCGGATGGGTGC
AAGCATTGCGCCTGCAAAAAGTCCAGATGCTTGAAGCTGTGAGTGAGCACTCCCCCTGTCCCTCCCGATTGCGCCACGAT
TTCGCCGCCGGGCCCTAGGATGTGCCCTGTTTCGCCTGCGGTGCT---------T--------TAGACAGGGACGGCCGA
TTTTGAAATGTTGGGTGCCGTGGGGTTTCGCTGCTCAGATTTGATTCCGTTTAGGTTTTGGAGAGGGGCATCTGCGCGAG
GGTGGGATGGCTTAATCATCCTGTCTAATTTGA-----TGTCCTGGTCACATATCTGCTTCAGTTTCAAAAATCCCTTTG
GTATGCTGGGTTCTCCAGTGAACTG-------GTAGCAGCTTGCCTCTTGTAGTATGCAGTGAAAAATTCAGGAAATTAT
TTTCCTGATATACGTGCTTGCTGCAGAGGTTCCCAAATTCAGAATTGATTTTTCATGATGGGGAGTGCATCACTTGTTTT
AGCATTCGTTTGTGCACTATTTGATTATTACTATGATTCCGCTTCGTAAGTTACCTCAATTCCTCCTTTGAAACATAGCT
CATGGAGCAGCTTATATCTGCGTGGCCGGACTAAGCAGCTTATAATGTGTTCCCGTAGATA----AAAAATGACTCGAGA
TCTTGCTATGGAAGTGTTTTAGAATCCCAGGTCGTTTTTTATCTATTGGGACACATTATATTGGTGAAAACGTTTATCAG
TATATGATGATTAGTTTAAATGTGGATGTCCTCCTAGCCCAGTGCCC-------CAGTGGTGGGAGTGCAGTGGCGCATT
CCCGCC-GGGGAGGGTTCGATCCCAGTGGGTGTCATTTAACCATCCCGGTTAATATCATGGGATTGGGTGTGTGTCTCAC
AAAATTCCTTCTTAATTAAAAAGCCGCAAGGGCTCCTACCCCTGCTGGTCTAGTTTTTTGCTTAATGATCACTTTAAATG
AAATCGTATCTATATGTGCCTGTATATGCCAATATT-TTTTTTATGAATTAAGATTTGTAACCATGCTCTGATGAACCAT
TAACATAAATCATGATTGTCTGCGTCTGCAGGTATTGTCCATGTTTTGCTGGTGGAGGTTATTGTTCTGAAAAATGTGGA
TGTGTGCCATGTTTCAACAAGGCTGATTTTGCAGAGACAGTTCAGACCACTCGCAAGGTGCTACTTTCACGTCAGAAACG
GATGTCTCTGAAAATTAATAGAAGACTGGAGGCTAATGCTGAAACTATGGTTGTTTTCTTGACTCAGTTAGACGATGTTG
CAT---TTTTAAGTTCCTTTTGGCTCATAATAATAATTTCCATTCTATGTCTTTGTCACCTGCAGGAAGACGCACACAAT
TCTTCTTCTTCAACTCCACCAAGGCGAGGTTGCAACTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGATTGCTACCA
GGTTCCATCTTAGCTCCAAACACTTCACTATGTCTTTGGGGTACAAATTTGTTCTCAAGTTGATTGGTGTGAACAGGATG
GGACTGGATGCTCCTTATTTTGTCGATGTGAGGATTGCAAGAATCCTTATGGGAAAAATGGTAAGCACGGAATGCTTGTG
ATAATTTCCCTTTTCAATGAAACCTGTGTAAATATCCCCTTGTGCAATATCATCGCGTGCTGGCTAATGACTGTCG-TCC
TACTGCAGAAGGTTTTATGGCGGACGAAAGCAAGCGTTTTATATACACCGGTGCAGATCTGGACCATAGCGAGGACGAAC
ATGACTTCATTGTGGAGCGCTCGCCTCGCCTTCAATCACCCATCTCAAAGGAGTCCTCTTTCCAGCACACCCCGCCTCGC
AGCAAGGCCTCGAGCAGAGACACGCACCTGCTGCCGCAGGTGCTGTCGCAGTGGCAGCCGCGCTCATGGCAGCAGTCCTC
GAAGAGGCAGGGCAACGACCACCGGGCGGTCGACGACTCGGGAGAGAACAACAAGAGCTCGAGCCACGAGTGGCAGCTGG
CGAAGCACCAGGTCCAGGAGGACACCTACAGCATCTCGCGGTGCGTCCAGATCCTGAACGGCATGGTGGAGCTGTCGCAG
GTGGAGAAGTCGGTGGCCCCCGACGTGTTCCTGCATCCGGGCAACCGGGAGATATTCGTCTCCCTGGGGCTCGATGTCCG
CGCCCTGTGGCTCAAGCGCAAGATCCAGCACCTGACTTAGGGCGGTGT--TTTTTTTTCTCTCTAGCGTTGTTGTTGG--
CCTCCGGGTGAGATTTGAGGGGGGAGCATTGGATGTTGCGTTTATAGATGATGGTGATG----ATGGATGCCCTGCTGGC
CGGCTGGAATTCACAGGATGCTTAGGGTTTTTTTTCTTGTATACTGAGATGTGTATCCCGGATCTGCACCGCCTGTCGTT
GTAGAGAGCTTAGCGGCTGAGTACCTGGTGGCATGTTGCAATAATTGATGATTTGTTAT---GCACCTG----TAGCTAA
TGTGATGTTGTGCCTGAGATGAGATGTTGTCTGGGGTTGCAAGTTCTCCGTGCGGAGCAGGTTCTCTCCAGCAGAAATAG
GGGATCACTGTTGGTATTTTTCTTACAAGATCCTT---------------------------------------------
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--GTGGAATATATGCGTCAAATATATAAGAGTGTTTTTGACACTACATTATTAGAATAAAAAAAACGTTCTTAGGGAGTA
GCTAGGAATACTAGTAGAATGCCTGTGCGTTGCTACGGGCTATAATGTATATAAATAAATCAAATAAATGATTAAGATCA
CCTCTATGGTCGAAGCTCATTTCTTCCTCGTACGTCCGGGCATGTTGGGACTTCAAACGGGCGCCCAACGGTCTCAAAAC
TCAACCGACTGGACAGTCCGGGCTAAACCCGGGCATGGGCAGCCCGGCCCGACGACCCGGCCCGAAAAACCCGGGCCGGG
CCAGGTCGGGCTTGACATTCAGGCCAGGCTCGGGCTTTGTTTTGCAGCCCGAAAGATAATTCGGGCCGGGCTCGAGCTTC
AATTTTTCTGTATTTCAGGCCGGGCTTTCGGGCTTCGGGCCGGGCTTGCACGTGCGCGTACTAAAAAACAGCATTCGGGC
CGGGCTTTCGAGCTTCGGGCTTGATTTTGGGCCGGGCTTGGGCTTGAAAACAGGGAGTATTTCAGGCTTCGGGCTGGGCT
CGGGCTTGAGAAATGAAGGTCGGGCTTTTACAAGCCCGGCTCGAAACCCGGCCCGGCCCGACGTTTGCCCGGGTTTAGTA
CAGGCTGCCCCAAATCCATCTCATATATGGGGAGCAATGTCGTTGTCCGAACTATCCGCCATGTTATTTCCAACACGCGG
TCCCAACACAACACAAAACCCCACACCATGAGGCACCCTTCCCTCATGTCGGACCCTCTCTCCTTCCAGCTCAGTTTTCC
ACCATAGCCTAATATTTCTCGCTGGAGCCCTCTACTTTATAACCGGATGAGACTCACCTCACTTTCGTCCTGGCGCCCTC
TTCCCTTCATACCATACTTCCCCACGGACCACCAAGGAGGAGTGCCCCCACCAACCGCTTGCTCTCCGTCATGATCCCCT
CCTCCCGTGTTCGTGCCGATCCGCCACGACCATCAAGGCGGAGGAGGCGTGCGCCGCCCATGACGACCCCAAGCCAAGAA
GGCAAATTCGATGTCTCATGAGGCATTGCCATGTTGTAACATACAGTTGAATGTCATGCATTACCACAAAACAAAAATAT
GATGGCTGTTGTTGGGGATGCAACTAATACGCCACCGCGTCTGTTATTAACTATTAAAACAACAAACTAATGCATTTACC
CTTCTATCCTAAAAAATATATTGTATGACCTGATCAAAAAAATATGACTGCCTTATCCAATTTGCCACTTTTTCTTAAGT
AGGGAAAATATTCCGCTCACATTCGTAACTGAACAATCAACCACAGCCTCCAACCCGCTCACTCTCAACTCTCACTCCTA
TCACAAAATCCTGAGCCTCCCCTCCATGACCGCAATGCCAGTTCATTGCCCCCAGGCGCCATGAACGGTCGCAGCGTAGG
CTCGCCGGATTGGCGGTGGTGGCCTAGAACATCTAGGGCTACTCCATGCGAGGGATCTCTGCGGTTTGACGGGCGAGTCG
CTAGCATGGTGAACATCTAGGGCTACTCCATACTGAATGGCAGAGCAAACAAATTGAAGCAAGCATGCCTGAACCAAACA
GAGGTGGACTCCATCGATCAACCAGACAATTATCGCAACGATCGGATGGATTGACTGGAGAGATGGATGTATGGACGCAA
GATGTACCTCGAGCATGCGCCAGATGGAGGGGTCGACGACTCGACGGCCTTGACGGCGCCGTTGTTCCACTCGGAGCGGC
GCTCCTCGGCGTCGAGGAACTTCATGCGCACCTGCACGCCGGGTGCCCAGGCGCCGATCAGCGCGTCCTCCACCTCCTGC
TTGGGCACGACGAACTCCCCGGCGCCCTGGCGCGGGTAGTAGGTGACGGTGAAGAGCCTGCCCGTTTGTAACTGAACAAA
TCAACCACAGCCTCCAACCCGCTCACTCTCAACTCTCACTCCTATCACAAAATCCTGAGCCTCCCCTCCATGACCGCAAT
GCCAGTTCATTGCCCCCAGGCGCCATGAACGGTCGCAGCGTAGGCTCGCCGGATTGGCGGTGGTGGCCTAGAACATCTAG
GGCTACTCCATGCGAGGGATCTCTGCGGTTTGACGGGCGAGTCGCTAGCATGGTGAACATCTAGGGCTACTCCATACTGA
ATGGCAGAGCAAACAAATTGAAGCAAGCATGCCTGAACCAAACAGAGGTGGACTCCATCGATCAACCAGACAATTATCGC
AATGATCGGATGGATTGACTGGAGAGATGGATGTATGGACGCAAGATGTACCTCGAGCATGCGCCAGATGGAGGGGTCGA
CGACTCGACGGCCTTGACGGCGCCGTTGTTCCACTCGGAGCGGCGCTCCTTGGTGTCGAGGAACTTCATGCGCACCTGCA
CGCCGGGTGCCCAGGCGCCGATCAGCGCGTCCTCCACCTCCTGCTTGGGCACGACGAACTCCCCGGCGCCCTGGCGCGGG
TAGTAGGTGACGGTGAAGAGCGTGCCCTCTGCCGCGAGCCGCACGGCCTCGTCCACCTCCTCGGGCGCCCTCGGACGCCT
GCTGGGAGACGGCGGGGTACCTGGGCGCGCCCGGTGAGCAGCTCCCCGTCGGCGCGGCGCATGAAGACGACGGCGTCCCC
GGCCATGAGCAGCTTGGGGTTGACTAAAATGGCATGATTTGGAACAAAGGCGCTGGGTGTTTCCTTACTTTGACGGTGGT
TCGAGGGGATCGTGCGAGGGGATGAAAGAACTTACATTTGGTGGGAGGGGGCATCGATGGGGCATCAATGAGGTACATAG
GAAAGGTAAGAATCGATGCGTTAGGAAAGTTAGGATTTTGAATTGATTTTCATGAAAATAGGGTTTTAATGTTTGTAATG
TGATTTCTGTACCTGCCCGTTTGTGACGGTGTCTGGTTAGGAAAGTTTGTAAATGTTAAGAAAGTTTTTATTGGGAAAGT
TTGTAAATGTTAAGAAAGTTTTTATTGGGAGGGTGAAAAAAATCAACGTGAGGATATGATGATGGAAAGAGAGACCAAAT
TAAACCAAACAAAAATAAACCAGACGAAAATAAACCGGACGAAAATAAACCGTGGACACAATCCTACCAACTCAGTCATT
AGGAGTAGAGATTCATATTCTCGTGGTCCGGCAGGGTCCTATGAAAAT--------------------------------
-------------------------------------------CTAGGAGAGTTCATGGCTCCTATCCGAATGTACTC--
--CAATCCAAATTAATTGACACAGTACAAAGC---TGTACCAAAGCTTGTGCGTCAATTACTTCCTCCGTCTG-------
------------------------CGTCCCATAACATAAT--------------------ATAAGAGCGTTTATTATGGG
ACAGGGAGTAATTTGGATTCGGAGGGAGTATAGGAATTGTATACAGGAAGTGTACAGGGAATGTCCCTTTCCTCGGTGTA
TCAAAC--------------------------AGGGCCTGGAGTTCCTGTGAATCACCTATCGAGACTAG----------
-------------------------ACCATGGGTCCTTTCAGAGGTCCAAGCGTCCGTGGCCACGCCCAGTCAAGCAGAA
TCGAAATAAAACGATGAAAAAAAGGAACCAAAATAAGCAGGAAACTTATAATGCAAAACAAAATGACGGGGAATCAATGA
ATCATCCAGCAAAACTTCAGCTTCGTTGAGGTAACCAACGCAGCACGATTTTATATCTCGATTTCGTTACAGAGGTGTCA
TGATA-GGTCATACAAGCTTTATTACGGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------------------------------S-
--------------SSSS-SSSSSS-----------------------------------------S-------------
---------------------------------------------------S----------------------------
--------------------SS---S-S---------------------------S------------------------
--------------------------------------------------------------------------------
----------------------SSSSSS----------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------SS-SSSS--------SS-------------------------------
---------------------------------------S----S-----------------------------------
----------------------------------------------------------------------S----S----
---------------------------------------SS---SSSSSSSSSS--------------------------
-------------------S-------S-------------S--------------------------------------
--S------------------------------SSSSS----------------------------------------S-
-------------------------SSSSSSS------S-----------------------------------------
-S------------------------------------------------------------------------------
----------------------------------------------------------S-S-------------------
--------------S--S--------S-------S--------------------------SSSS-----S--S------
----------------------S--S-------SS---------------------------------------------
------------S----------------S-----------------SSSSSSS---------------------S----
SS----S-------S---S----------S---------------------------S--------S--S----------
S-------------------S-------------------------------------------------S---------
-----S-------------------S----------S--------------S----------S-----------------
---------------------S---------------------------S------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------------S---------------------------------------
-----------------------S--------------------------------------S-----------------
----------S------------------------------------S--------------------S-----------
-S-------------------------------S--------------------------------S-----------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S--S----------------------------------
-------------S------------------------------------------------------------------
-----------------------------------------------------------------------S-----S--
--------------------------------------------------------------------------------
----------S--SS--------------------------------------------SSSS-----------------
------S-------------------------------------------------------------------------
----------------------------S---------------------------------------------------
-------S---------------------------S----------------S----------S----------------
------SSSS---------S------SSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
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-----------------------------------------S---S--S----------SS--SSSSSSSSSSSSSSSSS
----S-S--------S--SS-----S-S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S-----S-SS---------------S------SS-----------------------
----S-SSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-S--SS----------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------------S--SSSS-S----------------
-----------------------------------------------S-------------------------S------
------S-------------------------------------------------------------------------
--------------S--------------
>forward_670
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GCGACGCCTAAATCCGAGAT--------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1710
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------CTGGTAGCACCTTGCCTCTC-------------------------------
--------------------------------------------------------------------------------
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-----------------------------
>forward_936
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CGCCACAGTCTCAAAAGAGC------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1938
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-----------------ATGTGTGGCTGGACTAACCA-------------------------------------------
--------------------------------------------------------------------------------
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>forward_1431
--------------------------------------------------------------------------------
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----------------------------------------------------CCCCTGTCCCTCCCGATTA---------
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>reverse_3323
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------------------------------------------GGACAACCACAAGAGCTCGA------------------
--------------------------------------------------------------------------------
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>forward_1719
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------TGAACTGGTAGCTGGTAGCAC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3326
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------CAACCACAAGAGCTCGAGCC---------------
--------------------------------------------------------------------------------
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>forward_3074
--------------------------------------------------------------------------------
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--------------TTATGGCGGACGAAAGCAAA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_4064
--------------------------------------------------------------------------------
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---------------------------------------------------------------GAACGGAGGGAGTACAA
CGG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------
