>input_sequence_31741
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------------------------------ATGGCGAGCGCCAAGGCGACGATGGGGCAGGAGAAGCAAGACCACTTCGT
CCTCAAGAGCGGGCATGCCATGCCGGCCGTCGGATTGGGCACCTGGAGGGCTGGCTCAGATACCGCCCACTCCGTTCAGA
CGGCCATCACCGAGGTAT----ATATCGCCATGCCCTTGCTTGGGTTTTCAGATACAGTTTTACACCACAGAACTCTGGC
TAGTTCGCTCGGAAATGACAGTAGGGTTATGTG--ATAACCTGAGTGTACGTATGATGGCTGCAGGCTGGATACAGGCAC
GTGGACACAGCTGCTGAATACGGAGTAGAAAAGGAGGTATGTACGTACATCATTATACCAGTACCCCGTTTCTGTACTGT
ACTAGCCTAGCTAGCTTAGTAAGCGTGTCCATCAACTACTGAG-----TTCAGGTCGGCAAAGGGCTTAAGGCTGCAATG
GAAGCTGGAATCGACAGGAAAGATTTGTTCGTCACGTCAAAATTATGGTACGCACGTACTTATGTGCGGAGTCGT--AGA
TTGTCGTTCGACGACAGTAACTTAACTTACGGCGTGTT-TCGAGCATCTGAATTTTGATCGATATTTTGGGCTACTTCCT
TTAGGTGCACGAACTTGGTCCCTGAGAGGGTGCGGCCAGCATTAGAGAACACGCTCAAGGATCTGCAGTTGGACTACATC
GATCTTTACCATGTAAGAAAGATAAAACCAGTG-CATG-------------------------ATTGTTGCTTTGTCTGG
TAATAAGGGACAGTGTAGTGCTTAACACTGCTTATAGTT-TTACTATTATCTTGTT---CTTTAGTTACTGGTTCAGCTT
ATGGATACAGTAATAATTATGCCATTGGCGATCTGGAATCGGCAACCTAGATGTGGTGCAGATCTTGTCAAGCTTAAGCA
TG---TAGTATTTCCTGTGACACGCACTGCATACTGACATGCGGAAATTTTGAAACAAAAATG-AACGAATGTAGATTCA
TTGGCCATTCCGGCTGAAAGATGGGGCACACAAGCCTCCGGAAGCAGGGGAGGTGCTGGAATTCGACATGGAGGGGGTGT
GGAAGGAGATGGAGAACCTTGTGAAGGACGGACTGGTTAAGGACATCGGGATCTGCAACTACACCGTGACCAAGCTCGAC
CGGCTGCTACGGTCTGCAAAGATTACACCGGCCGTGTGCCAGGTTGTG----AACTCTCAGATTTGATCGCTCGTCCGGC
ATTCGCTAGAGTCACTTTTTTGACCTTGTG----TTTATTTACTTAA----CTGACAGATGGAAATGCACCCTGGTTGGA
AGAACGACAAGATTTTCGAGGCCTGCAAGAAGCCCGGAATCCATGTCACCGTAAG-------------------------
------------------------------ATGTCTTAGCAGACATTTTATTCGCAAAACAAAAGCGCTTAACGGTATTC
TTATTTCAGTAAAATGCATTGGCGGTCACTGAACTTTGTCTCGTACTCTTATTTTCCTTGTGCAGGCTTACTCCCCATTG
GGTTCTTCAGAGAAGAACCTTGCGCATGACCCGGTTGTCGAAAAGGTGTGTATGTTCAGAAATCAGAACATAAAC-----
---------------GGCTAGTTTTCAAATTAAGTGTACCGTGTAGTGGCTCAACTCAAACCA--TTGAACTGCAGGTGG
CCAACAAGCTGAACAAGACCCCGGGGCAGGTGCTCATCAGGTGGGCTCTGCAGAGGGGAACGAGTGTGATTCCCAAGTCG
AGCAAAGACGAGAGGATCAAGGAGAACATCCAGGTGTTTGGGTGGGAGATCCCTGAAGAGGACTTCAAGGTCCTGTGCAG
CATCAAAGACGAGGTGAGGGATTGTGACACTTATTCTCTCTTGATCACACTGCAAATG--GTGAGATGAAACTAGAGTCA
AAATTTCGACACGACTTGGAAATTGGAATACAGCCAGCTGCTGCGTTTGAGTGGCAGTTTAGCAGTACACCACCACCTGA
ATCCGGATCTCGTTTCCTAG-AAAAACTGCATGTCTGTCACCCTAAATATGGTACT---AGTAACACAGAAACACTTGCC
GCGGTTGGTCGATCTGTTGGTACTC-----------------CATATGTTTAGTCGTTTCTTCAGGGTATCTTGCAGGCA
GGCTAGTTAGATAAAACCAGTTTAGGCCCGAGAAACGA-------------------------TTCCAGATTGAGCATCT
TTCCATGGGTTTATTGTGCCAACTACTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGTATCTAA
TACTAAAATGTGACTTGATGCGTTCGTATTTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGATTACTGGTTAAAT
ACCCCTACTTTCATTCTAAAAACTACAATTCCTGTCG-----AGTTATTAGAAGATGATTAGTTCCTCAAAAAAAAAAAG
ATTAGCCGTACGTTTTCCATCTGATG-TGATGTAAGCATGCACGTTGAATGATCCCCGGTGCTTTTTTCTTTTTGATGCA
GAAGCGTGTGCTGACCGGGGAGGAGCTGTTCGTGAACAAGACCCACGGGCCGTACAAGAGCGCA----TCCGAAGTCTGG
GATCACGAGAACTGA-----------------------------------------------------------------
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-------------------------------------------------------
>chr1D_1_TraesCS1D01G293000
ACTACTATGTTTGCTGCAGCAATGGGTTGATCTTGCTCGGTACACTGGAATACAGAAGATTCAGGAACAGCTTCCTTCTG
ATGAGGTCACCGCGCCACCTGAAACATCCCAGTTAGAGGACGGTAGAACCGATGTACAGAACCCGGATGAGAGCAGCAGC
AGCAGCAGCAATGCGGACCGATCGAGTGATCCGACCAAGTGATTTGGTCGCTTTCCGTGGGCTTCAAAGTCCACAACCAT
ATATGTATATAGGTTCAAGACAGCGAAAGGAATCTTGTTGCTACGATGCTGAGCCTCTCACTCTTTGATCGGCCAGGA-T
GGACTATTCATACAAGAAAAAACAATAAATTACTGCAGTTAGCCATTTTTTCTAGGGTAAATATACTCTTGTAGATTGTA
CTTT----------------------------------------------------------------------------
--GTACTCCCTCTGTAAAGAAATATAAGAGCATTTAAATCACTATTTTAGTAGTCTAAACGCTTTTATATTTCTTTACAA
TGGGAATACATATGTAAGGAGAAGACGATGAGTGTCTAGTGGATTAATTGGCATCAGCAATTACGGGTTTTGAGTTGTAT
ACTTATATACATTTACGG--------------------------------------------------------------
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--GTTTGGCATAGGCCTCTACCTGTTACACTCAAATCTTTCTGCCTGCTATAAAGCCAGCTTCCCTCGTA----ATCGTC
CAGAGAGACGGCAGGTAAGCAAGTTCGTTCTGGCACCATCAGCTAAGCCACAT-TTTTTGCTGTGTTGCTGGCCACCTAT
ATGGGTTCTGGCGAGTTCTCCCAGTGCAACCCGTGCTCCATGCACCGTGGCATGGTGACACACATGCACCCTAGGCGGTG
ACCTCCCGCCATCTGTCCATGGATGCCGATGTACGTGGCATCTCTTCCTAGAACTCTCCATTTCTATATATTCGAGCGCG
AATGCCATATCTCCT--TCCGTGGAATAAAGAAGCTGCCCACGAACACTGGAAAGAAGAAGAGACGTGAGAAGAGAGGAG
AGGTTTGAGATTCAGAAGGCGTGATCATTCATGGCGAGCGCCAAGGCGACGATGGGGCAGGAGAAGCAAGACCACTTCGT
CCTCAAGAGCGGGCATGCCATGCCGGCCGTCGGATTGGGCACCTGGAGGGCTGGCTCAGATACCGCCCACTCCGTTCAGA
CGGCCATCACCGAGGTAT----ATATCGCCATGCCCTTGCTTGGGTTTTCAGATACAGTTTTACACCACAGAACTCTGGC
TAGTTCGCTCGGAAATGACAGTAGGGTTATGTG--ATAACCTGAGTGTACGTATGATGGCTGCAGGCTGGATACAGGCAC
GTGGACACAGCTGCTGAATACGGAGTAGAAAAGGAGGTATGTACGTACATCATTATACCAGTACCCCGTTTCTGTACTGT
ACTAGCCTAGCTAGCTTAGTAAGCGTGTCCATCAACTACTGAG-----TTCAGGTCGGCAAAGGGCTTAAGGCTGCAATG
GAAGCTGGAATCGACAGGAAAGATTTGTTCGTCACGTCAAAATTATGGTACGCACGTACTTATGTGCGGAGTCGT--AGA
TTGTCGTTCGACGACAGTAACTTAACTTACGGCGTGTT-TCGAGCATCTGAATTTTGATCGATATTTTGGGCTACTTCCT
TTAGGTGCACGAACTTGGTCCCTGAGAGGGTGCGGCCAGCATTAGAGAACACGCTCAAGGATCTGCAGTTGGACTACATC
GATCTTTACCATGTAAGAAAGATAAAACCAGTG-CATG-------------------------ATTGTTGCTTTGTCTGG
TAATAAGGGACAGTGTAGTGCTTAACACTGCTTATAGTT-TTACTATTATCTTGTT---CTTTAGTTACTGGTTCAGCTT
ATGGATACAGTAATAATTATGCCATTGGCGATCTGGAATCGGCAACCTAGATGTGGTGCAGATCTTGTCAAGCTTAAGCA
TG---TAGTATTTCCTGTGACACGCACTGCATACTGACATGCGGAAATTTTGAAACAAAAATG-AACGAATGTAGATTCA
TTGGCCATTCCGGCTGAAAGATGGGGCACACAAGCCTCCGGAAGCAGGGGAGGTGCTGGAATTCGACATGGAGGGGGTGT
GGAAGGAGATGGAGAACCTTGTGAAGGACGGACTGGTTAAGGACATCGGGATCTGCAACTACACCGTGACCAAGCTCGAC
CGGCTGCTACGGTCTGCAAAGATTACACCGGCCGTGTGCCAGGTTGTG----AACTCTCAGATTTGATCGCTCGTCCGGC
ATTCGCTAGAGTCACTTTTTTGACCTTGTG----TTTATTTACTTAA----CTGACAGATGGAAATGCACCCTGGTTGGA
AGAACGACAAGATTTTCGAGGCCTGCAAGAAGCCCGGAATCCATGTCACCGTAAG-------------------------
------------------------------ATGTCTTAGCAGACATTTTATTCGCAAAACAAAAGCGCTTAACGGTATTC
TTATTTCAGTAAAATGCATTGGCGGTCACTGAACTTTGTCTCGTACTCTTATTTTCCTTGTGCAGGCTTACTCCCCATTG
GGTTCTTCAGAGAAGAACCTTGCGCATGACCCGGTTGTCGAAAAGGTGTGTATGTTCAGAAATCAGAACATAAAC-----
---------------GGCTAGTTTTCAAATTAAGTGTACCGTGTAGTGGCTCAACTCAAACCA--TTGAACTGCAGGTGG
CCAACAAGCTGAACAAGACCCCGGGGCAGGTGCTCATCAGGTGGGCTCTGCAGAGGGGAACGAGTGTGATTCCCAAGTCG
AGCAAAGACGAGAGGATCAAGGAGAACATCCAGGTGTTTGGGTGGGAGATCCCTGAAGAGGACTTCAAGGTCCTGTGCAG
CATCAAAGACGAGGTGAGGGATTGTGACACTTATTCTCTCTTGATCACACTGCAAATG--GTGAGATGAAACTAGAGTCA
AAATTTCGACACGACTTGGAAATTGGAATACAGCCAGCTGCTGCGTTTGAGTGGCAGTTTAGCAGTACACCACCACCTGA
ATCCGGATCTCGTTTCCTAG-AAAAACTGCATGTCTGTCACCCTAAATATGGTACT---AGTAACACAGAAACACTTGCC
GCGGTTGGTCGATCTGTTGGTACTC-----------------CATATGTTTAGTCGTTTCTTCAGGGTATCTTGCAGGCA
GGCTAGTTAGATAAAACCAGTTTAGGCCCGAGAAACGA-------------------------TTCCAGATTGAGCATCT
TTCCATGGGTTTATTGTGCCAACTACTCCCTCCGTCCCAAAATTCTTGTCTTAAATTTGTCTAGATACGGATGTATCTAA
TACTAAAATGTGACTTGATGCGTTCGTATTTAGACAAATCTAAGACAAGAATTTTGGGACGGAGGGATTACTGGTTAAAT
ACCCCTACTTTCATTCTAAAAACTACAATTCCTGTCG-----AGTTATTAGAAGATGATTAGTTCCTCAAAAAAAAAAAG
ATTAGCCGTACGTTTTCCATCTGATG-TGATGTAAGCATGCACGTTGAATGATCCCCGGTGCTTTTTTCTTTTTGATGCA
GAAGCGTGTGCTGACCGGGGAGGAGCTGTTCGTGAACAAGACCCACGGGCCGTACAAGAGCGCA----TCCGAAGTCTGG
GATCACGAGAACTGAGCTGTGCCGAGCTCCATTAAGCATGCTGAAGAAGCGCAGATGATCTAAGCAGCGGGTGCTCTTTC
CATATGCTCTGTAATACAATAAGCACGGCTGTGTACATATATCCAATAAATAAGAACGAACGGCGCTTCTTCCTCCTCCG
TGCTTGGTGTGGTTTTGCATTATTTAGTCGCCTTCACCGCCGACGATACTAGCATGCTGCTGTGTACGGAATCCGCGTTC
CACTCCAACCATGCATGAGTCGAGATTTGGTGTTTTGCATTTGGCAAGGGATCCAAATGTGAGGAGGAGTTCTTCTCGGT
TTTTGCTTCCCAACTTCCTTGCGCATGAAAACCTACAACAACGACATGGGAGGAACAGAATGCAGCTGCTGCTGCGTTCG
AGTGGCAATTCTACACCACCTGAATATGGATCTCGTTCGGCAACCAAAAGAATGTCACCCTAAATACAAAAACACTTGCA
CATGAACCGTAGCATTCAGATGCCGCAATTGGTCGATATGTTATGTTAGTTCTATGTACTGCATTTTTTTTGAGACACCT
ATATATACTGCATATGTTTGGTCAGTTCCCTCAGGGCATCTCGCAGGCCTTTTATAATATTAGATACACCAGTTTAGGCC
CGAGAAATGACGTACAGTAATATTCCCTCGTTTGAAAATATTTGTCATTAAAATGGATAAAAAATATGTATTTAAAATTA
AAATACATCTAGATACATCTTTTTTATCTATTTTGATGACAAGTATTTCTGGACGGAGGGAGTACGTAGTATATTCCAGA
TAGAGCATGCATCGTTCCATCCGTTTACTGTGCCATCTACTTGTTAAATACAGTACTCCTAGACTCCTAGTGCACTTTGA
AAAACTACAAATCCTATCGAGTTAGAAGATAATTAGCCGTACGTTTTCTTCTGATGTAAGCACGTTGGATGGTCGCAGGT
GTTTGTTACAGAAGCGTGTGCTGTGCTAACCGGAGAGGAGCTCTTGGTGAAAAAA
>chr1B_2
-CTACTATGTTCGCTGCAGCAATGGGTTGATCTTGCTCGGTACACCGGAGTACAGAAGATTCAGGAACAGCTTCCTTCTG
ATGAGGTCACCACACCACCTGAAACATCCCAGTTAGAGGGTGGTAGAACCGATGTACAGAACCCGAATGA------CAGC
AGCAGCAGCAACGCGGACCGATCGAGTGATCCGACCAAGTGATTTGGTCGCTTTCCGTCGGCTTCAAAGTCCACAACCAT
ATATGTATATATGTTCAAGACAGCGAAAGGAGTCTGGTTGCTACGATGCTGAGCCTCTCACTCTTTGGTCGGCCAGGAAT
GGGCTATTTCATATGGG-AAAAACATAAATTGCTGCAATTAGTCATTTTTATA--GGTAAATATACTCTTGTAGTCTGTA
CTTT----------------------------------------------------------------------------
--GTAC--------------------------------------------------------------------------
---------ATATGTAAGGAGAACGCGATCAGTGTCTAGTGGATTAATTGGCATCAGCAATTAAGGGCTGTGAGTCGT-G
ACTTAAATCTGCTGTGGGAAAGTTGTGGCTGAGCTCAGCTGGACTGCAATTGGCAAGGTTAATCAAACGAAGGAACTTTG
GACTGCACAGGCACTAGAGAGCAACACCCCGTCTCGGTTCAGAGCATGTGGTGCCTGAAATCAAGCATGGCCATGCCAAA
CTCGCCATTTGGACGCCATGCTTATGTGACGCATATGCCACAGGAAACTCTTGGTATGAGGGCCGACGCCTTGGGCTTGG
AGGGCGTCACAGCGTTATGCCGTTGCCATCTCGTAGTTACGCCAATTAGCGAACGAATTAATTGAGCAGAGTAGTAGACT
TTAATAGCTTTATTTATGTGAGATATAATTGAGTAGATTAGTGCCACAAACATCAAATCATAATTGATATCACACGCATT
TTCGAAAGAACACAGTGAATCTTGTATAAAACCAATATTTACTATACAATGCCGAGCCTCTCACTCTTGGATCGCCCGGG
AACAGACTATTTTGTTTGGGAGAAGCATAAATTATTGTAGTTCTCCTTTGATCGATTTTCTAGAGTAA---ACATACTAT
TGTAGTTTGTAGTTTGTATACATATCCAAGGAGAAGAGAACACGATCAGTGTCTAGTGGATTGATTGATTGGCAGCCGCA
ATTAAGGGCCGTGAATCTCAACTT-AATCTGCTGTAAAT-----------------------------------------
------------------------------TCAAATCTTTCTGCCTGTTATAAAGCCAA----ATTTGCTCGCCATCGTC
CAGAGAGATGGTAGGTAAGCAGGTTCGTTCTGGTGCCATCGGCCAAGTGACAAATTTTTGCTGTGTTGCTGGCCACCTG-
-TGGGTTCTGGCGAGTTCTCTCAGTGCAACCCGTGCTCCATGCATCGTAGCATGGCGACACTTAAGTTCTTTAGGCGGTG
ACCTCCCGCCATCTGTCCATGTATGCAGATGTACGTGGCATCTCTTCCTAGAACTCTCCATGCCTATATAATCAGGCGCG
AAGCCGTATCTGCTTCCTCCGTGGAATAAAGAAGTTGCTCACGAACACCAGAAAGAAGAACAGACTTGAGAAGGGAGGAG
AGGTTTGAGATTCAGAAGGCGTGATCATTCATGGCGAGCGCCAAGGCGACGATGGGGCAGGAGAAGCAAGACCACTTCGT
TCTCAAGAGCGGGCATGCCATGCCGGCCGTCGGGTTGGGCACCTGGAGGGCTGGCTCGGATACTGCTCACTCCGTTCAGA
CGGCCATCACCGAGGTATATATATATCGCCATGCCCTTGCTTGGGTTCTCAGATACAGTTTTGCA-----GAACTCTAGC
TAGTTCGCTCGGAAATGACACTAGGATTATGCTGAATAACCTGAATGTATGTATGGTGGCTGCAGGCTGGATACAGGCAT
GTGGACACAGCTGCTGAATACGGAGTAGAAAAGGAGGTATATACGTACATCATTATACCGGTATCCCGTTTCTGTACTAG
CCTAATC--GCTAGCCTAGTAAGCGTGAACGAACACCAACTGCTTGATTTCAGGTCGGCAAAGGGCTTAGAGCTGCCATG
GAAGCTGGAATCGACAGGAAAGATTTGTTTGTCACGTCAAAATTATGGTAC---------TATGTGCAGAGTCGT--AGA
TTGTCCTTCGATGTCAGTAACTTAACTTACGGCGTGTTTTCGACCATCTGAATTTTT------------GGCTACTTCCT
TTAGGTGCACGAACTTGGTCCCTGAGAGGGTGCGGCCAGCATTAGAGAGCACGCTCAAGGATCTACAGTTGGACTACATC
GACCTTTACCATGTAAGTAAAAGAAAACCTGTGCCATG-------------------------ATTGTTGCTTTGTCTGC
TAACAAGGGACAGTGCAGTGCTTGAAACTGCTTACCGTT-TTACTATTATCTTGCACTACTTTAGTTACTGGTTCAGCTT
ATGGGTACAGTAAC---TATGCCATTGGCGATCTGGAATCAGCAACCTAGATGCGGTGCAGACCTTGTCATGCTTAAGCA
CGTACTAGTATTTCCTGTGACATGCACTGCATACTGAAATGCGAAATTTTTGAAACAAAACTACAACGAATGTAGATTCA
TTGGCCGTTCCGGCTGAAAGATGGGGCACACAAGCCTCCGGAAGCAGGGGAGGTGCTGGAATTCGACATGGAGGGGGTGT
GGAAGGAGATGGAGAACCTTGTCAAGGACGGACTGGTTAAGGACATCGGCGTCTGCAACTACACCGTGACCAAGCTCGAC
CGGCTGCTACGGTCTGCAAAGATTCCACCGGCCGTTTGCCAGGTTGAGTGAGAACCCTCAGACTTGATCAGTAAGGCGAC
ATTTACCGAAACCAGTTTTTTGACCTTGTA----TTTGTTATTTACTTGATCTGACAGATGGAGATGCACCCTGGTTGGA
AGAACGACAAGATGTTCGAGGCCTGCAAGAAGCGCGGGATCCATGTCACCGTAAGACTTCTCATCTCTCCTGAAAACGAG
ACATGATAAAATGGCCTTGATGGTGTAAC---ATCTTAGCAGCGTTTTTGTTTTCAAAACAGAAGTGCTTAATG------
------------------------------------------GTATTCTTGTTTCCTTTATGCAGGCTTACTCACCATTG
GGTTCTTCAGAGAAGAACCTTGCTCATGACCCGGTTGTCGAAAAGGTGTGTATGTTCAGAAATCAGAACATAAACATTTT
CCCCTGTTGAATCCAGGCTAGTATTCAAATTACGTGTGCTGTGTAGTGGCTCAGCTCAAACCA--TTGAACTGCAGGTGG
CCAACAAGCTGAACAAGACCCCGGGGCAGGTGCTCATCAGGTGGGCTCTGCAGAGGGGGACGAGTGTGATTCCCAAGTCA
AGCAAAGACGAGAGGATCAAGGAGAACATCCAGGTGTTCGGGTGGGAGATCCCTGAGGAGGACTTCAAGGTCCTGTGCAG
CATCAAAGATGAGGTGAGCGACTGTGACACTACTTATACAGTCTTCACTCGAAACTGCTGCCAAAA------------CA
AAATTTGGACACGACATGGAATGT------CAGGCAGCTGCTGCGTTTGAGTGGCACTTTAGCAGTACACC---------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr1A_2
-CTACTATGTTCGCTGCAGCAATGGGTTGATCTTGCTCGGTACACTGGAGTACAGAAGATTCAGGAACAGCTTCCTTCCG
ATGAGGTCACCACACCACCTGAAACATCCCAGTTAGAGGACGGTAGAACCGATGTACAGAACCCGGATGA------GAGC
AGCAGCAGCAACGCAGACCGATCGAGTGACCCGACCAAGTGATTTGGTTGCTTTCCGT-GGCTACAAAGTCCCCAACCAT
ATATGTATATAGGTTCAAGACAGCGAAAGGAGTCTTGTTGCTACGATGCTGAGCCTC--ACTCTTGGATCGGCCAGGAAT
GGACTATTCATATGAG-AAAAACAATAAAATACTGCAGTTAGCCATTTTTTCTAGAGTAAATATACTCTTGTAGTTTGTA
CTCACTCCATAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTAATCTATAAACGCTTTTATATTTCTTTACAGTGG
GAGTAC--------------------------------------------------------------------------
---------ATATGTAAGGAGAAGACGATGAGTGTCTAGTGGATTAATTGGCATGGGCAATTACGGGCTTTGAGTTGTAG
ACTTAAATCTGCTGTGGGAACCCACGATTGCCATCCATTTATATATAGCCAGGTTCAAGACAATTAAAAGAGTCTCTTTG
CTACTCTTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GATCAGCCAGG
AAGGGACTACTTTATCTGAAAGAAGCATGAATTAGTATAGTTCTCAGTCAGTCATTTTTCTAGAGTAACAAATATACTGC
TGTACTTTGTACTTTTATACG-TATGCAAGGAGAAGAGAACACGATCGGTATCTCGTGGATTGGCA-ATTCGCAGCAGCA
ATTAAGGGCCGTGAGTCGCAACTTTAATCTGCTGCAAATTCAGATTAGTTTGAAATAGTATTGGATGATTAAGGGGTAGA
AAGTTTGGCATAGGCCTCTACATGTTACAATCAAATCTTTCTGCCTGCTATAAAGCCAACTTTATTTCCTCGTCATCGTC
CAGAGAGACGGCAGGTAAGCAAGTTCGTTCTGGTCCCTTGAGCCAAGTGACAAA-TTTTGCCGTGTTGCTGGCCACCTAT
ATGGGTTCTGGCGAGTTCTCGCAGTGCAACCCGTGCTCCATGCACCGGAGCACGGTGACACACATGCACCCTAGGCGGTG
ACCTCCCGCCATCTGTCCATGGATGCAGATGTACGTGGCATCTCTCCCTAGAACTCTCCATCCCTATATATTCCAGCGCG
AAGCCGTATCTCCTTCCTCGGTGGAATAAAGAAGTTGCTCACGGACATTGGAAAGGAGAGAAGACTTGAGAAGAGAAGAG
AGGTTTGAGATTCAGAAGGCGCGATCGATCATGGCGAGCGCCAAGGCGACGATGGGGCAGGAGAAGCAACAGCACTTCGT
CCTCAAGAGCGGGCATGCCATGCCGGCCGTCGGATTGGGCACCTGGAGGGCTGGATCGGATACTGCCCACTCCGTTCAGA
CGGCCATCACCGAGGTATG--TATATCGCCATGCCCTCGCTTGGGCTTTCAGATACAGTTTTACACCACAGAACTCTGGT
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CGTGCTTACGTGCAGAGTCATGCAGA
TTGTATTTCGATGTGGG-----TAACTTACGGCGTGTT-TCAAGCATCTGAATTTTGATCGTTGTTTTGGTCACTTCA--
-TAGGTGTACAAACTTGGTCCCTGAGAGGGTGCGTCCAGCATTAGAGAACACGCTCAAGGATCTACAGTTGGACTACATC
GATCTTTACCACGTAAGAAATATAAAACCAGTGACTTCTTTTGCATGCAAATTTCTTGCTCTCATTGTTGCCTTGTCCGG
CAATAAAGGACAGTGTAGTTCTTAATTGTTTATAGCTTTATTGCTATTATCTTGTA-TACTTCAGTTACCGGTTCTTTCT
ATGGATATATTAAT---TATTAATAATTAACAA-----------------------------------------------
----------------------------------------------------------------AATGAACGCAGATCCA
TTGGCCGTTCCGGCTGAAAGATGGGGCACACAAGCCTCCGGAAGCAGGGGAGGTGCTGGAATTCGACATGGAGGGGGTGT
GGAAGGAGATGGAGAACCTTGTCAAGGACGGGCTGGTTAAGGACATCGGCGTCTGCAACTACACGGTGACCAAGCTCGAC
CGGCTGCTACGGTCTGCAAAGATTCCGCCGGCCGTTTGCCAGGTTGAG----AACCCTCAGATTTGATCAGTAACGCGAC
ATTTACCGAAACCGATTTTTTGACCGTAGTGATGTTTGCTACTTGCTTCATCTGACAGATGGAAATGCACCCTGGCTGGA
AGAACGACAAGATGTTCGAGGCCTGCAAGAAGCGCGGGATCCATGTCACCGTAAGATATATTTCTT---CTGAAACTGAG
ATATGATCAATTGACCTCGCTGGTGTAATAATATCTTAGCAGCCTATTGGTTTCCAAAACGGAAGTGCTAAAGG------
------------------------------------------GTATTCTTGTTTTCCTTGTGCAGGCTTACTCCCCACTG
GGTTCTTCAGAGAAGAACCTTGCGCATGACCCGGTTGTTGAGAAGGTGCGTATGTTCAGAAATGTACC------------
---------------------------------GTCTACCGTGTACTAGTAGCTCAATCTAAGGGTTGAACTGCAGGTGG
CCAACAAGCTGAACAAGACCCCGGGGCAGGTGCTCATCAGGTGGGCTCTGCAGAGGGGAACGAGCGTCATTCCCAAGTCG
AGCAAAGACGAGAGGATCAAGGAGAACATCCAGGTGTTCGGGTGGGAGATCCCTGAGGAGGACTTCAAGGTCCTGTGCAG
CATCAAAGATGAGGTGAGCGATTGGGACACTTACTCCGTCTTGATCACAGTGCAAATGCGGTGAAATGAAAGCAGCGTCA
CAATTTCGACACGACTTGGAACGCA--------GCTGCTGCTGCGTTTGCGTGGCAGTTAGCAGTACA--CACCACCTGA
ATCTGGATCCCGTCTATTAGAAAAAACTGCATGCCTGTCACCCTAAATATGGTAGCAGCAGTAACACAGAGACACTTGCC
GCGGTTGGTCGATCTGTTGGTTCTAGATAATACTACTGGCCGCATATGTTTAGTCGTTTCTTCAGGGTATCTTGCAGGCC
GGCCAGTGAGATAAAACCAGTTTAGGCCCGAGGAACGACGTAGTAATATACTAGTACAATAGATTCCAGATAGAGAATCG
TTCCATCTGTTTTACTGTGGATGCTACAGTACCTTTTTAAGTG-------------------------------------
---------------------------------------------------------------------------TAAAT
ATCCCTACTTGCACTCTAGAAACTACTAATCCTGTCAAGTTAAGTTATTAGAAGAAGAAGAT------------------
-TTAGCCGTACGTTTTCCATCTGAATCTGATGTAAGCGCCTTTTTGTTGTC--------------------------GCA
GAAGCGTGTGCTGACCGGGGAGGAGCTGTTCGTGAACAAGACCCACGGGCCATACAAGAGCGCGGGCGTCCGAAGTCTGG
GATCACGAGAACTGAGCT--------------------------------------------------------------
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-------------------------------------------------------
>SNPs
S----------S-------------------------------------S------------------------------
-----------S-S--------------------------------------------------------SSSSSS----
-----------S----------------------------------------------S---------------------
-------------------------------S------------------------------------------------
------------SS--S---------------------------------------------------------S-----
--------------------------------------------------------------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------------------------------------------------S-----------S
-----S--SSSS-SSS----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------S-------S----------------------------S---SSS-S-SS----------
---------------------------------SS--------S---SS---S---------------------------
--------------------S---------------------------S-------------------------------
--------------------------S----------------------------------SS----------S------
--SS-SSSSSSS-S--------------------S---S---------------------S----S--------------
--------------------------------------------------------------------------------
---------------------------------------------------------S-----S----------------
--------------------------------------------------------------------------------
--------------------S----S-----SS-----------S----S-----S-----------------------S
----------------------------------------S------------------S---S--------------SS
S---SS-SS------S-----------SS-SSSS--S-SSSSS--------------------------SS-----S---
-----------------------------S---------------------SSS---S---------S------------
-----S-----S-S-----------------------------------------------S-S----------------
----------------------------------------------------------------S---------------
--------------------S-----------------------------------------------------------
-------------------------S--------SS-------------------S------------------------
--------------SSS-----------------------S------------S--------S-------S---------
S---------------------S--------------S-----S--S-------------S-S-----------------
------S-------------------------------------------------------------------------
----------------------S--------------------------SS-----------------------------
------------------------S----------S----------S--------S-------------SS-SSSS--S-
---SS-SSS-SS--S--------------S-------S--SSS-SSS---------------------------------
-------------S-------------------S---S------------------------------------------
--------------------------------S---------S-S----S--SS-------S---S------S-SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S----S-----------------------------
--------------------------------------------------------------------------------
----------------------S---------S--------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------S-----------------------
---------S--------S------------------S--------------------------S------SS--S----
---------------------SS-SSSSSS---S----------------------------------------------
---S-----S---S-SS----------------S--------------------SS--------------S---------
---------------------S--S------------------------------------------------------S
---S---S------------------------S--------------------------------------S---S---S
------SS----SSSSSSSS-SSSSSSSSSS--S-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-S--------S--S----S-------S-S-------S------------------S--SS-SSSSSSSSSSSSSSSSSSS
S-----------------------SS-----------SSSSSSS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS---
---------------------------------------------------S-----------S----------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_628
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGGCATCAGCAATTACGGGT------------
--------------------------------------------------------------------------------
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>reverse_2807
--------------------------------------------------------------------------------
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------ATTCCGGCTGAAAGATGGGG------------------------------------------------------
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-------------------------------------------------------
>forward_2326
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------------------------------------------------------------------TGCGGAGTCGTAGA
TTGTCG--------------------------------------------------------------------------
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>reverse_4392
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------TTTGATGCA
GAAGCGTGTGC---------------------------------------------------------------------
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-------------------------------------------------------
>forward_3319
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-------------------TGGCGGTCACTGAACTTTGT-----------------------------------------
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-------------------------------------------------------
>reverse_4848
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-----------------------------------------------GGGAGGAACAGAATGCAGCT-------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
