>input_sequence_31659
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-------------------------------------------------AGTAGCACGTAGTACGTGCAGCTCGGGTAGC
TCTCGTCCGGTGCGGCAGACGACCACCGGGCCGGGCTGCCGTTCTGGAGCGGAAGGGGGACAC-TGGTGTGTGCATGCCG
ACCGAGGTTTTGAGCGTGCGCGGATGGCGGACCCTGCGGCGGCGGCGACGGCACCGATGACCATCGACTTCCTCCGGGCG
CGCCTGCTCTCCGAGCGCTCCGTCTCCCGCGCCTCCAAGGAGCGCGCCGACCAGCTCGCCGCCAGGGTACGTATGCTGCG
CGCGCATTCTTGCGGATGTCAATGTCGGC--------GCCATTGATTCGCGCGTGTCGTTCAGGTTGCGGAGCTGGAGGA
GCAGGTCCGGGCGGTGACGGCGCAGCGGCGGCAAGCCGAGCGGGAGGCCGCGGAGGTGCTGGCCGTCCTGGAGTCCCGGG
GCTTCTGCGGCAGCCTCTCCGACGAGCTCGACGCGGGCTC---CGATGCCGA---CGAGGAGGAGCGGGATGAGCCAAGC
GACGCTACAGCCACCGGCGGCGACCCTGCGCCCCGCTCCCACAACGAGCAGGGAC------AG------GAGCAGCCGCC
GGAGAAGGGCGAAGCGGAGGAGGGGGA---GGACGCGACGTCCGGGACGGCCCTGCAGCCCGGCGGGCTGTCGTGGAAAG
GCCGGTGCGCGAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTACTTCCTCGCCTCGCAG
TCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAGGTCCCGCCATTGACT
CTCCTTTTCGTCTCGCTCGTAGATGAGCAATTAAACATTGAGCTCTGCAATGCCATTCTTGTCAATTACTATTTGACACT
CTGCACTTCTGTTCTGCTCAACGATGGCAGTAGCGTTGCTGCGGTGGTCGCGGAGAGTCGGAAGGAACAGCGAGACGGAC
CGCGTTGCGCCGATGATGATGGCCGGACCGAGTTTGACGGCGAGGTGGGCGGAGACGACCGGCGGAGCTCGGGGGACGGT
GGTGGTCAGTACGTGATGAGGCGCGACGATGGTGATGGGGAGATGGAGAGGGTGCTGGAGAAGCAGGCCGAGCTGATCGA
GCAGTATGAGGCCCAGGAGAAGGCTCAGACGGACTGGGAGAAGAAATTCAACGACACGCGGGGCTCACCGAGCGAGGTAC
GTA-----------------------TT------------------TTGGCAACGAATTCGTTTGCTCTGTCAAAACACG
GCAGAG---TTAGCGTCATGAATGGTGTGGCCTGTATGTTTTTTTTTCTTCTTTAAGAATTTGAGATTTGACATGATGAA
TATTGCCGGAGGCGACAGTTCTTACACCGATTTGACCCATGGTTTTTGCTTTCCAAACTGCAGGGTGACGTTGAGGCAGA
TTGCCAGTTCCAAACCAAATCA---GGTGGTGAAAAGCTCCTCGTTTCCAGGACGCACAAGAACGCATCAGAAGAAATGG
CGCGGACTGCTGCCTTCTCTGCACAAGGAAGCTCCAGCTACAGCACGGCCACAAGACGAAGCCAAGGG---------GAC
GCAAATTCAGACGGCTGCTCGAGCCACTACACCAACTCCGCGTCGTCGTCCGGGCTCGGCACCATCAAGGCGCCATCGGA
GTCGAGCCCGAGCCCGTCGGTCAGCAAGGTCTCGGACTGGAGCTCGTCGCGCTTCCATGATCACGCCGACGACAATCA--
----------------CGGCAACATCGACGTGGAGAGCGTTCTCCAAGCCCTGCAGCGCGCCAGGATCTCCCTGAGGCAG
AAGCTGGACAGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGTGATGAGTACCGTGCGGACCTCT-
-----ACGACGACGACGGCAACAGCTCGTACAGGGATGAACACGTCGGGTCGAGCCCGTCTCGGCAGGAAATACTGGCCC
TCCCAGCGCCAGAGGATTACCATGGTTACCATGACCGTGCAAGTGCAAACTGTTGGACCGATGGGGGCGCCGACACGGCA
CCCACGGAGAAACCGAGCCCA---------CCTCAGCAGGAGATCCTGGCTCTCCCGGCCCCGGGCGACGATGC------
---------------CGACGTGAAGATCCCTGTCGGCAGTCCGGGCCTGTTCCGGCTGCCGACAGACTCGTTCCCGAAGG
AGGAGACGCTGCCAGCAATTAGTAACGGGCACGATGCAGAGCTCGGGCTGATTGAGGTTGAGGCTGCTCGACACGACACA
TACAGAGATGATGATGGTGCTGGGGTTTTAC------CGAAGCAGTTGTATGATCCTC------------CTACTTCTGG
TAGGTGCAGCGTCCCACCGGGCTCGGGCT---------------------TCCTCTCTGGGATCCCAGGACTCCCGGAAG
ACCTGAGGAAGGGAGGAGGTCTTCTTGGAGACGCAGACCTGTT---------------------------CATTTCCAAC
AAGTGGATGCTGTAACGTGTGTTTGCTGCTGAT----TGTCTAGAGTGTGTGTTGGCCAGCTTTTTCCTGTGGTCCGGTT
----ACAGTGGCGTGTATGCCATGCTCTGCGGCGTTGT-------CAAGCACAACCAGTTTGTTT---------------
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>chr3B_1_TraesCS3B01G402800
AAGAACAGATCGTCCTGTAATGTAAGCACTTGACTTGGCAGATACTCCTACCTGATGATGTGTGCGTGCAACCTCTTATC
CAGTTTCCCG-ACAGATACACACATTTGCTGCCCGTATGCATTTGCT---TCATCATCATCCTACTAAGGTCTGAAGTTG
TGCGCAGATAGAAACGTGTTGCGGGTGCGCG-----------TTA--AATGGCTTGATGGAAACGTGTGTGCTCGATATT
ATA--TTTTACTTTGTGCACTGCAATTTTCGTCATGGCCTCTTTGTTTGGTGCAGTACGTGGAGCTGACCTCGATTTTCC
T-TTGTTGTTGGAAACGGTGAGCTT-GATTTAAATGAGGTCATAGCAAGTCGTTGGCGGTTTTCCATGCGGTC---GTAT
--------GAGGTTGGTCGGTGAGGCGCTGGATCCGATCCAGGCACAAAAAGATTCCAAGCGGGGCATGACACTCATGCG
TGATCCCG----GCGACATCTTGGATTTTGTAGCCTAAGCCAGCA----------CAGTTGGGCTGTACCGCGCTCGACA
GAAGAGAAAATTACCCCCACAGCCACAAGGCCACATCATCATAAATAACGGACCCCGATGCAAGGAGG--------ACCT
CCGTCCAGCCACAAGATTGTTTGCCCACAGCAGAGCACGGCACAGGACCCCGGGGCGACAGGTGAGGCATCGCCGTTGGC
C----------GATGGAACAGGCAGCGATACCGTTGCGCTAGCTTGGGCTG-GA--TCCCATGGCCCTCGTGCAACGACC
GCTACGCGCTGTCGGT----GCGCGCGTGGGTACGGGCGA---------CCTCGCGTGCGCCTCCTCGCAGAAAGACAAG
CTCCTTTTTTAATATTTGCTCTACGTACGAGCACGAGCGCGAGCAC------GAGAAAACCAAGCCGTGGCGTGACGGTG
GCCGGTGGGTGCGGTGTTGGTGTAGACCGTCACCGTAGAGCGT---CGAGGAGCGTGGAGTTGTTGTCAATTGTATTGTA
TTCTAACCCCACGCCCCGCTCCCCGGGAGTGAGGCCGGACGTCCACTTCAGTAGCACGTAGTACGTGCAGCTCGGGTAGC
TCTCGTCCGGTGCGGCAGACGACCACCGGGCCGGGCTGCCGTTCTGGAGCGGAAGGGGGACAC-TGGTGTGTGCATGCCG
ACCGAGGTTTTGAGCGTGCGCGGATGGCGGACCCTGCGGCGGCGGCGACGGCACCGATGACCATCGACTTCCTCCGGGCG
CGCCTGCTCTCCGAGCGCTCCGTCTCCCGCGCCTCCAAGGAGCGCGCCGACCAGCTCGCCGCCAGGGTACGTATGCTGCG
CGCGCATTCTTGCGGATGTCAATGTCGGC--------GCCATTGATTCGCGCGTGTCGTTCAGGTTGCGGAGCTGGAGGA
GCAGGTCCGGGCGGTGACGGCGCAGCGGCGGCAAGCCGAGCGGGAGGCCGCGGAGGTGCTGGCCGTCCTGGAGTCCCGGG
GCTTCTGCGGCAGCCTCTCCGACGAGCTCGACGCGGGCTC---CGATGCCGA---CGAGGAGGAGCGGGATGAGCCAAGC
GACGCTACAGCCACCGGCGGCGACCCTGCGCCCCGCTCCCACAACGAGCAGGGAC------AG------GAGCAGCCGCC
GGAGAAGGGCGAAGCGGAGGAGGGGGA---GGACGCGACGTCCGGGACGGCCCTGCAGCCCGGCGGGCTGTCGTGGAAAG
GCCGGTGCGCGAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTACTTCCTCGCCTCGCAG
TCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAGGTCCCGCCATTGACT
CTCCTTTTCGTCTCGCTCGTAGATGAGCAATTAAACATTGAGCTCTGCAATGCCATTCTTGTCAATTACTATTTGACACT
CTGCACTTCTGTTCTGCTCAACGATGGCAGTAGCGTTGCTGCGGTGGTCGCGGAGAGTCGGAAGGAACAGCGAGACGGAC
CGCGTTGCGCCGATGATGATGGCCGGACCGAGTTTGACGGCGAGGTGGGCGGAGACGACCGGCGGAGCTCGGGGGACGGT
GGTGGTCAGTACGTGATGAGGCGCGACGATGGTGATGGGGAGATGGAGAGGGTGCTGGAGAAGCAGGCCGAGCTGATCGA
GCAGTATGAGGCCCAGGAGAAGGCTCAGACGGACTGGGAGAAGAAATTCAACGACACGCGGGGCTCACCGAGCGAGGTAC
GTA-----------------------TT------------------TTGGCAACGAATTCGTTTGCTCTGTCAAAACACG
GCAGAG---TTAGCGTCATGAATGGTGTGGCCTGTATGTTTTTTTTTCTTCTTTAAGAATTTGAGATTTGACATGATGAA
TATTGCCGGAGGCGACAGTTCTTACACCGATTTGACCCATGGTTTTTGCTTTCCAAACTGCAGGGTGACGTTGAGGCAGA
TTGCCAGTTCCAAACCAAATCA---GGTGGTGAAAAGCTCCTCGTTTCCAGGACGCACAAGAACGCATCAGAAGAAATGG
CGCGGACTGCTGCCTTCTCTGCACAAGGAAGCTCCAGCTACAGCACGGCCACAAGACGAAGCCAAGGG---------GAC
GCAAATTCAGACGGCTGCTCGAGCCACTACACCAACTCCGCGTCGTCGTCCGGGCTCGGCACCATCAAGGCGCCATCGGA
GTCGAGCCCGAGCCCGTCGGTCAGCAAGGTCTCGGACTGGAGCTCGTCGCGCTTCCATGATCACGCCGACGACAATCA--
----------------CGGCAACATCGACGTGGAGAGCGTTCTCCAAGCCCTGCAGCGCGCCAGGATCTCCCTGAGGCAG
AAGCTGGACAGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGTGATGAGTACCGTGCGGACCTCT-
-----ACGACGACGACGGCAACAGCTCGTACAGGGATGAACACGTCGGGTCGAGCCCGTCTCGGCAGGAAATACTGGCCC
TCCCAGCGCCAGAGGATTACCATGGTTACCATGACCGTGCAAGTGCAAACTGTTGGACCGATGGGGGCGCCGACACGGCA
CCCACGGAGAAACCGAGCCCA---------CCTCAGCAGGAGATCCTGGCTCTCCCGGCCCCGGGCGACGATGC------
---------------CGACGTGAAGATCCCTGTCGGCAGTCCGGGCCTGTTCCGGCTGCCGACAGACTCGTTCCCGAAGG
AGGAGACGCTGCCAGCAATTAGTAACGGGCACGATGCAGAGCTCGGGCTGATTGAGGTTGAGGCTGCTCGACACGACACA
TACAGAGATGATGATGGTGCTGGGGTTTTAC------CGAAGCAGTTGTATGATCCTC------------CTACTTCTGG
TAGGTGCAGCGTCCCACCGGGCTCGGGCT---------------------TCCTCTCTGGGATCCCAGGACTCCCGGAAG
ACCTGAGGAAGGGAGGAGGTCTTCTTGGAGACGCAGACCTGTT---------------------------CATTTCCAAC
AAGTGGATGCTGTAACGTGTGTTTGCTGCTGAT----TGTCTAGAGTGTGTGTTGGCCAGCTTTTTCCTGTGGTCCGGTT
----ACAGTGGCGTGTATGCCATGCTCTGCGGCGTTGT-------CAAGCACAACCAGTTTGTTTACAGGAATCACCGGC
AGTGGAGAT-GAGATGCCTTTGTTTGTTTGGTATCCGTGCAAACCTCGCCCAAGCCCAAGGCAAGACAGGAAAAGTTGCA
TGGCTTTTCGCCGGTTGCATGCGATTAGTGCGACCCT----GCAGCCTGCAGGTGACTGAAACTCAAACAGCTCCAGTTG
AGTGCTGTCGTCTGGCCGGTCTTCTGTGCGGCCTGTTTGGACGGTCTGTGCGG---CTGGCGTGCCTGCTCCACCTCCGG
CCCTTGGTTGGCCCATCCTCTCTCGGCGTTTGTAA---------------------------------------------
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-------------------------------------AGGCACCCACAACACTCATGATGACACCACAGCCAAGTGCGTG
ACCTTTGCTTCTGGAGCAATCTCGCCGCACCTTTTGCCCCGCGCAACACCGTGGTGTATGCATCTCACGTGTGTTGCCTC
CAGTTGCAGCAGCCATCATGGCGTGTTGCTGCCAGTGCTACGCTCGAGCTGTGCGCTGCAGCT----GCCCTTCCAGTCT
CCCATCGCTGGAAAACTTTTGCAAAACTCT-------------------------------TCCCAAGCTCGGCGACGCA
GCCCTAGGCAGCCTACCAGACAGGAGCCTGCTGAGATTAAGGATGCAAATGGTGGTACCCACTGCCTCTAGGGTATTCTC
CGAACCTCTTTGGTTCAATCAAATGAACTAAAATTTCCAAAGTCACACAACTTTTGAAATTTTAGTTCAACAGAGGGTGC
CGTGGGGGTCACAAATTTGTATTCCTAGCTGAGAGATTGGAAAAGGGACTTAAAGAGTTGATTCAAATGCCAGTAAGACC
ATACACCTACACTCCGAATTCAACACAGAATATTGTATGCAAAGAGACCTCTCTGATTTGACCAAGTTGGAAGTCAGATA
TTTGATTCCTGTAAATATAAGCCTAACAGGTCGGTCGGAGTCCCCAGGCTTAGTTCAGACCACTTGCCGCATCCACATAT
ACATATCA-TACCCCCTAAAGCTACTAATATAGGAAGAGCAAAATCCCTCATTTATAATACACACTAGTCA
>chr3D_1
AAGAACA-ATCGTCCTGTAATGTAAGCACTTGGCAGATATC--------------TGTTGTGTCTGTACAATCGGTCATC
CAGTTTTCCTAACAGAAACACACATTTGCTCCCCGTACGCCATTGCTTTATCATCATCATCCTACGAAGGCCTGAAGTTG
TGCACAGATCTAGTATGAGCATGAGAGAAGTGCGGGTGTGCATTA--AATGGCTTGATAGAAACGTGTGTGCTCGATATT
ATA--T--TACTCGGTGCACTGCAAATT-CGTCACGGCCTCCTTGTTTGGTGCAGTACGTGGAGCTGACCTTGATTTTCT
TCTTCTTGTTGGAAGCGGTGAGCTTGGATTTAAATGAGGTCATAGCAAGTCGTTGGAGGCTTTCCGTGCGGTCGTAGTAT
--------GAGGCTGGTTGGTGAGGCGCTGGATCCAATCCAGGCACGAAAAGATTCCAAGCGGGGCATGACACTCATGCG
TGATCCCTCCCAGCGACAGTTTGGATTTTGCAGCCTAAGCCAGCA----------CAGTTCGGCTGTACCGCGCTCGACA
GAA----AATTTACCCCCACAAA-------------CATCATAAACAACGGACCCCGATGCAAGGAGGGAGG----ACCT
CCGTCCAGCCAGAAGATCGTTTGCCCACA-----GCACGGCACAGGACCCCGGGGCGACAGGTGAGGCATCGCCATTCGC
CACTGTGAATTGACGGAACAGCCAGCGATACCGTTGCGCTGAGGCTCGCCGTCAGCTCTCATGGTCCTCGTGCAACGACC
GCTACG-GCTGTCGGT----GCGCGCGTGGGGGCGACCGCGGACTGCGTCCTCGCGTGCGCCTCCTCGCAGAAAGACATG
CCACTTTTTTAA---------TACGTACGGGCACGGGCACGAGCAC------GAGAGAACCAAGCCGTGGCGTGACGGTG
GCCGGTGGGTGCGGCGTTGGTGTAGACCGTCACCGTAGAGCAGGAGCGGGGAGCGTGGGGTTGTTGTCAATTGTATTGTA
TCGTA-------GCCCCGCACCCCGGGAGTGAGTTCGGAAGTCCACTTCAGTAGCACGTCGTACGTGCAGCTCGGGTAGC
TCGTGTCCAGTGCGGCCGACGACCACCGGCCCGGGCTGCCGTTCTGGAGCGGACGGGGGACAC-TGGTGTGTGCATGCCG
A----GGTTGTGAGCGTGCGCGGATGGCGGACCATGCGGCGGCGG---CGGCGCCCATGACCATCGACTTCCTCCGCGCG
CGCCTGCTCTCCGAGCGCTCCGTCTCACGGGCCTCCAAGGAGCGCGCCGACCAGCTCGCCGCCAGGGTACGTATGCTGCG
CGCGCATTCTTGTGGATGCCAATGTCGGC--------GCCGTTGATTCGCGCGTCTCGTTCAGGTCGCGGAGCTGGAGGA
GCAGGTCCGGGCGGTGACGGCGCAGCGGCGGCAAGCGGAGCGGGAGGCCGCGGAGGTGCTGGCCGTCCTGGAGTCCCGGG
GCTTCTGCGGCAGCCTCTCGGACGTACTCGACTCGGGCTCCGACGACGACGCGGACGAGGAGGAGCTGGACGAGCCACGC
GACGCCACGGTCACCACCGGCGACCCTGCGCCCCGCTCCCACGGCGAGGAGGGAC------AGGAGCAGGAGCAGCCGCC
GGCGAAGGGCGGAACGAAGGAGGAGGACGAGGACGCGACTTCCGGGACGGCCCTGCAGCCGGGCGGGCTGTCGTGGAAAG
GCCGGTGCGCGAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTACTTCCTGGCCTCGCAG
TCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAGGTCTCGCCATTAACT
GTCGTCCTCATT-------------------------------TCTGCAATGCCATTCTTGTCAG--AT--TTTGACACG
CTGCAGTTCTGT-----------ATGGCAGTAGCATTGCAGCACTGACA---GAGAGTCGGAAGGAACAGCGAGATGGAC
CACGCTGCACCGATGATGATGGCCGGACCAAGTTTGACGGCGAGGTGGGCGGAGACGACCAGCGGAGCTCGGGCGACGGT
GGTGGTCAGTACGTGATGAGGCGCGACGATGATGATGGGGAGATGGAGAGGGTGCTGGAGAAGCAGGCCGAGCTGATCGG
GCAGTATGAGGCCGAGGAGAAGGCTCAGACGGACTGGGAGAAGAAATTCAACGACACCCGGAGTTCACCCAACAAGGTAC
TACTACCACCGACGTATGAGCTGCATTT------------------TTGGCAACAAAATCACTAGTTCTGTCAAAATACG
TCAGAG---TTAGCATCATGAATGATGTGTCCTTG-----------------------ATGTGAGATTTGACATGATGAA
CATTGCCGGAGGTGATAGTTCTTGCACCGATTTGACCCATAC-TTTTGCTTTCCAAACTGCAGGGTGACGCTGAGGCAGA
TTGCAAGGTACCGGCGAGATCAGGTGGTGATAAAAAACTCCTCGTTTCCAGACCACCCAAGAACGCATCAGAGGAAATGG
GGCGGACCGCTGCCGTTTCAGCACAAGGAAGCTCCAGCTACAGCACGGCCACAAGAAGAAGCCAAGACCAGCAAGGAGAC
GCAAACTCAGACGGCTGCTCGAGCCGATACGCCAACTCCGCGTCT---TCCGGGATCTGCGCCGTCAAGGCGCCATCGGA
GT------CGAGCCCGTCGGTCAGCAAGGTGTCGGACTGGAGCTCGTCACGCTTCCACGACCACGCGGACGACACACGGT
CATGTCGACAGTCGAGCGGCGACATCGACGTGGAGAGCGTCCTCCAGGCCCTGCAGCGCGCCAGGATCTCCCTGAGGCAG
AAGCTGGACCGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGCGATGAGTACCGTGCGGACCTCT-
-----ACGACGACGACGGCAACAGTTCGTACAGGGAAGAACACAGTGGCTCAAGTCCGTCCCGGCAGGAAATACTGGCGC
TGGGAGCACCGGAGGACTACCATGGCTACCATGACTATGGAAGAGAGGAAAGCCTTTGGGTCGATGGCGCCAATGCTTCG
CTCATGGAGAAGCCGAGCGGTTCAAGCCCTCCTCGGCAGGAGATCCTGGCTCTCCCGGCCCCGGGCGACGATCGCGTCCC
CGACGACATTCAGGGCGACGTGAAGATCCCTGTCAGCAGCCCGGGCCTGTTCCGGCTGCCGACAGATTCATTCCCAAAGG
ACAAGGGGCTGT---CAAGAAGCAATGGCCATGATTTTGAGCTCG------------------------GACATGACACA
TACAAAGATGATGAAGCTGGGGT---------TTCAGCGAGGCAGTTGTATGACCCGCACGGTTCCGCGGCTACTTCTGG
TAGGTGCGGCGTTCCAGCAAGCTCAGGCTTCACGGTAGGGGGCGCTTCGGTCCTCTCTGGGATCCCAGGACTCCCGGAAG
ACCTGAGAAAGGGTGGCGGCCCTCTCCGGGATGCGGACCTGTTCATGCAGCCGCGGCTGCGAGTGCAT--CATTTCTAAC
AAGTTGATGCTGTAGCGTGTGTTTGCCGTTGATTGTTTGTCTATAGCGTGTGCTGGTCGGCTTTTTCCTGTGGTCCGATG
ACAGACAGTGGCGTGTATGCTATGCTCTGCGGCGTTGT-------CAAGCACAGCCAGCTTGTTCACCGGCTGCACCGGC
AGTGGAGAT-AAGATGCCTTTGTTTGCTTGATATCCGTGCTAACCTCGCCCAAG------GCAAGACAGGAAAAGTTGCG
TCGCTTTTCGCCGGTCGCATGCG-TTAGTGCGACCCT----GCAGTCTGCAGGTGACTGAAACTGAAACAGCCAGT-TTG
AGTGCTGTCGTCTGGCCGGTGTC---TGCGGCTGGCTGCC-GGCGACGCACTCGTCCTGGCGTGCCTGCTCCATCTCTG-
----------GCCCATCCTCTCTCGGCGTTTGTAA---------------------------------------------
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-------------------------------------AGGCATCCACGACACTCATGATGAT--GACAGCGAAGTGCGTG
AACTTTGCTTCTGGAGCAATCTCGCCGCACCTTTTGCCCCGCGCAACACCGTGGTGTATGCATCTCACGTGTGTTGCCTC
CAGTTGCAACAGTCATCATGGCGTGTTGCTGCAAGCGCTACGCTCGAGCTGTGCGCTGCAGCTAGCTGCCCTTCCAGTCT
GCCTTCGCTGGAACCTGTGCAGAACTCTCGTAAAACTGCCGCCAGCTTCCCACGATGACTGTCCAAAGCTCGGCGACGCA
GTCCTAAGCAGCCTACCAGACACGAGCCTGCA---ATTAAGGATGCAAATGG--------------------GTATTCTC
CAAACCTCTTTAGTTCAACTAAATGAACTAAA--------------------TTTGAAATTTTAGTTCAGCAGAGGGTGC
CATGGGGGTCCCAAATTTCCATCCCTAGCT--GAGATTGGAAAAGGTACTTAAAGAGTTGATTCAAATGCCAGTAAGACT
ATACACCTACACTCCAAATGCCA-----------GTATGCAAAGAGACCTCT--GATTTGACCACGTTGGAAGTCAGATA
TTTGATTCCTGTAAATATAAGCCTAATAGGTCGATCGGAG--CCCAGGCTTACTTCAGACCACTTACCGCATCCACATAT
ACATATCA-TACCCCCTAAAGCTACTAATATCGGAAGAGCAAAATCCCTCAATTATAATACACACTAGTCA
>chr3A_176
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------------------------------TGCGGGTGTGCATTTATAATGGCTTAATAGAAACGTGCGTGCTTGATATT
ATTATT--TACTCGGTGCACTGCAATTT-CGCCATGGCCTCTTTGTTTGGTGTGGTACGCGGAGCTGACCTTGATTTTCT
TCTTGTTGTTGGAGACGGTGAGCTT-GATTTAAATGAGGTCATAGCAAGTCGTTGGAGGTTTTCCGTGCGGCC---GTAT
ATATGAGGGAGGCTGGTTGGTGAGGCGCTGGATCCAATCCAGGCACAAAAAGATTCCAGGCGGGGCATGACAATCGTGCG
TGA----TCCCAGCGACATTTTGGATTTTGCAGCCCAGCCAGTTGGACAGCACAGCAGTTCCGCTGTACCGCGCACGACA
TG--------------------------------------ATAAACTACGGACCCCAATGCAAGGAGGGAGGGAGGACCT
CCGTCCAGCCAGAAAATCGTTTGTCCACA-----GCACGGCA---------GGGGCGACAGGTGAGGCATCGCCATTCGC
CACTGTGAATTGACGGAACAGCCAGCGATACCGTTGCGCTAGCTTGGGGCTCGA--TCCCATGGCCCTCGTGGAACGACC
GCTACGCGCTGTCGGTGCGCGCGCGCGTGGGGGCGAC----------------------------------------ATG
CCACTTTTTTAA---------TACGTACGAGCACGAGCACGAGCACCGGCACGAGAGGACCAAACCGTGGCGTGACGGTG
GCCGGTGGGTGCCGTGTTGGTGTAG------ACCGTACAGCGT---CGAGGAGCGTGGAGTTGTTGTCAATTGTATTGTA
TTCTTGCCCCACGCCCCGCTCCCCGGGAGTGAGTTCGGAAGTCCACTTCAGTAGCACGTCGTACGTGCGGCTCGGGTAGC
TCTCGTCCAGTGCGGCAGGCGACCACCGGGCCGGCGACAGCGGGCTGTGCTGGTGCTGCAGCTTTGGCGTGTGCATGCTG
A----GGCTTTGAGCGTGCG--GATGGCGGACCCTGCGGCGGCGG---CGGCGCCCATGACCATCGACTTCCTCCGGGCG
CGCCTGCTCTCCGAGCGCTCCGTCTCCCGCGCATCCAAGGAGCGCGCCGACCAGCTCGCCGCCAGGGTACGCATGCTGCG
CGCGCATTCTTGTCAATATCAGTGTCGCTGTGGCAGTGCCATTGATTCGTGCGTTTCGTTCAGGTCGCGGAGCTGGAGGA
GCAGGTGCGGGCGGTGACGGCGCAGCGGCGGCAAGCGGAGCGGGAGGCCGCGGAGGTGCTGGCAGTCCTGGAGTCCCGGG
GCTTCTGCGGCAGCCTCTCGGACGTGCTCGACTCGGGCTCCGACGACGCCGA---GGAGGAGGAGCGGGACGAGCCATGC
GACGCCACGGTCACCGGCGGCGATCCTGCGCCCCGCTCCCACGGCGAGGAGGGACCGGAGCAGGAGCAGGAGCAGCCGCC
AGCGAAGGGCGAAAGGA---AGGAGGAGGAGGACGCGACTTCCGGGACGGCGCTGCAGCCCGGCGGGCTGTCGTGGAAAG
GGCGGTGCGCCAGCCCGCGGAGGGCCAGGCAGCTCAAGCAGCGGCACCGCCGGAGCTACGTCTACTTCCTGGCCTCGCAG
TCGGACCCCTCGCCCAAGTACCGGATGGGCCAGTCCTGCCGGAAGAACAAGCGCAAGGAGCTCAGGTCCCGCCATTGACT
CTCCTTCTCGTCTCGTTCGTAGATGAGCAATTAAAGATTGAACTCTACAATGCCATTCTTGTCAAAAAT--TTTGACACC
GTGCACTTCTGTTATGCTCAACGATGGCAGTAGCGTTGCTGCCGTGGTCGCGGAGAGTCGGAAGGAACAGCGAGACGGAC
CGCGTTGCGCCGATGATGATGGCCGGACCGAGTTTGACGGCGAGGTGGGCGGAGACGACCGGCGGAGCTCGGGGGACGGT
GGTGGTCAGTACGTGATGAGGCGCGACGATGGTGACGGGGAGATGGAGAGGGTGCTGGAGAAGCAGGCCGAGCTGATCGG
GCAGTACGAGGCCGAGGAGAAGGCTCAGACCGACTGGGAGAAGAAATTCAACGACACCCGGAGCTCACCCAACAAGGTAC
CACTACTACTGCTACTACCGATCGTGCATGGAAATTGAGAATGAGATTTGCAACAAATTCATTTATTCTGTCAAAATATC
GCAGAGCTATTAGCATCATGAATGATATGGATGTGGCCTTGATGTTTTTTCGTCGAGCATTGGAGATTTGACATGATGAA
TGTTGCCGTAGGCGACAGTTCTTACACCGATTTGGCCCATACTTTTTGCTTTCCAAACTGCAGGGTGATGTCGAGGCAGA
TTGCCATTTACAGACGAAATCA---GGTGGTGAAAAACTCGTCGTTTCCAGACCACCCAAGAATTCATCAGAAGAAATGG
CGCCGACCCCTGCCATATCAGCACAAGGAAGCTCCAGCTATAGCACGGCCACAAGACGAAGCCAAGACCAGCAAGGAGAC
GCGAACTCAGACGGCTGCTCGAGCCGATACACGACCTCCGCGTCATCGTCCGGGCTCGGCGCCGTCAAGGCGCCATCGGA
GT------CGAGCCCGTCGGTCAGCAAGGTCTCGGACTGGAGCTCGTCACGCTTCCACGACCACGCCGACGATCAGCA--
----------------GGGCAACATCGATGTGGAGAGCGTTCTCCAGGCCCTGCAGCGCGCCAGGATCTCCCTGAGGCAG
AAGCTGGACAGGCCGCTCCCGCCCAGCCAGGTGACGCTGGCGCTCCCGGCGCCGGGTGATGAGTACCGTACCGACCTCTA
CAACGACGACGACGACGGCAGCAGTTCCTACAGGGATGGACACGTTGGGTCGAGCCCGTCTCGGCAGGAAATACTGGCCC
TCCCAGCGCCGGAGGACTACCATGGTTACCATGACCATGGAAGCGCAAACTGCTCGAC---CGATGGCGCCGATACTGCA
CTCTCGGAGAACCCGAGCCCA---------CCTCAGCAGGAGATCCTGGCTCTCCCGGCCCCGGGCGACGACGATGGCGA
CGGAG------AGGACGAGGTGAAGGTCCCCGTCGGCAGTCCGGGCCTGTTCCGGCTGCCGACAGACTCATTCCCAAAGG
ACGAGACGCTGCCAGCAATTAGTAACGGGCACGATGCAGAGCTCAGGTCGATTGAGGTTGTGGCTGCTCGACACGACACA
TACAGAGATGATGATGGTGCTGGGGTTTCAGCTTCAGCGAAGCAGTTGTATGATCCTC------------CTACTTCTGG
TAGGTGCAATGTTCCACCGGGCTCAGGCTTCG---------------------TCTCCGGGATCCCAGGACTGCCGGAAG
ACCTGAGGAAGGGAGGAGGTCCTCTTGGAGACGCGGACCCGTTCATGCAGCCGCGGCTGCATGATTACACCATTTCTAAC
AAGTTGATGCTGTAGCGTGTGTTTGCCGTTGATTGTTTGTCTATAGCGTGTGTTGGTCGGCTTTTTCTTGTGGTCCGATG
ACAGACAGTGGCGTGCATGCTATGCTCTGCAGCAGCGTTGTCAAGCAAGCACAGCCAGTTTGTTCACCGGAATCACCGGC
AGTGGATGTAAAGATGCCATTGCTTGCTTGACATCCGTGCTAACCTCGCCCAAG------GCAAGACAGGAAAAGTTGCG
TCGCTTTTGGCCGGTTGCATGCG-TTAGTGAGACCCTGCAGGCAGCCTGCAGGTGACTGAAACTCAAACAGTTCCGGTTG
AGTGCTGTCGTCTGGCCGGTCTTCTGTGCGGCTGGCAGCCGGGCGATGCACTCGTCCTGGCGTGCCCGCTCCATCTCCGG
CCCTT-----GCCCATCCTCTCTCGGCGTTTGTAAGGCCAACTCCACCGCGCGATCCCAAACGGACGTTCGTTTTGTCCA
GATTCTGTCTGTTTGGGTAGCAATTTGGGGTCGTGTCTGGTCGTGTCCTGTGATGTGGTGGCCGTGCGTCCACCGTGCGG
ACGCATTCTTTTGCCCTATCCTGTCCGTCAGGGCCAAAAATGCCCAAATTTTCATCAAAACTAGTTTACAACTCAAATAT
TTGTCTAAAAATTAAAATAGTTTTACAACCCAATTGAAATTGTATTTAATAAAATATTTTTACAACCAAATCAAAATTGT
CATGACTAAACATAAAATGGACCAATACATCTATTGGTTGCCAATGTGATCCCACACGTGCTCAACCAAGTCACTTTAAA
GATTCAAATGAGAGTGCCAATCACGCATCTCACGATGGAATTGAGCAAACTGTTCAAATGTGGCCGGGTCTTGGTGCAGG
GGCTCAATATTTTCACCTTGATAGTCAAATCCTTGGTCGAAGATACTCTCATCACGCTCGTCCTCGACGATCATGTTGTG
CATGATCACACAAGCAGTCATCACCTCCCAAAGCTTCCTTTCATCCCATGACAGTGCAGGGTTTCGAACGATACCCCACC
GGGATTGAAGCACACCAAAAGCACGTTCCACATCCTTTCTAACACTCTCTTGCATTTGGGCAAATCTCTTTCTCTTCTCA
CCTTGGGGTTTCGAGATTGTCTTCACAAAAGTTGATCACTAAGGATATATACCATCTGCTAGATAGTATCCCTTGTTGTA
ATGGTGGCCGTTGATCTCAAAGTTGACAGGTGGGGAGTGGCCTTCTGCAAGCCTCGCGAAGACTGGAGAACGCTGCAGCA
CGTTGATATCATTGTGAGAACATGCCATGCCGAAGAAAGAATGCCATATCCAAAGATCATGTGATGCCACCGCTTCTAAT
ATGACAGTGCACGCCTTGACATGCCCTTTGTACTGGCCCTGCCAAGCAAATGGACAGTTCTTCCACTCCCAGTGCATACA
ATCTATGCTGCCAAGCATGCCTGGAAAGCCTCTAGCTGCGTTGGTCGCCAACAATCTCTCTGTATCAGCGACAGTTGGCT
ACCTCAAGTACTCTGGGCCAAACACCTCGATCACAGCCTGGCAAAACTTGTACATTGACATCAGACATGTTGTCTCACTC
ATACGCACATACTCATCCACCAGATCGCCTGGAATTCCATGTGCAAGCATGCGGATGGCCGCGGTGCATTTCTGGTAAGA
GGAGAATCCAAGCTTGCCAAGGGCATCCGTCTTGCACTCGAAGTATGGGTCATGAGCAACCACTCCCTCTCGGATACGAT
TGAACACATGCCTTGCCATTCGAAAACGGCGACGGAATTTATCCGGCTTGAAGAGCGGGGTGTTGGCAAAGTAATCGGCA
TAGAGCAGGGCGTGCCCTCTCTCCCTGTTGCGGTTCAGGTTGGGAGCACGGCCAGGGAGTGACCCCCTGTACCGAGGAAG
CTGCCGTTGAATGTGGTCGTGAACGACCAGTGCAGCCACCACAATATCTTCATCATCCGACGACGAATCGTCCGATGAAC
AAAGAAAGTGATGGAAGAAAAACTCGTCTCCACTGTCCATACCTTTGTGGGCAAAATGCCGAACACCTTGCGGGCGTGGT
GGCGAAGAGGCCGCGATGATCACCTCGACGCGGCAGGGGTGGTTGCCGGCCGGCTACTGGCAGCTATGGAGCTCTCGTCG
GGAGCTGCTGAGGACGCCGTGCTGCGTCGCCGGCGGTCCTGTCCCCTCTGCGGCCAGCAAAGACGTCGAAGGCCAAACCT
CCGATCGACGGCCAAAACTACGGTCACAGCACGGGCGGGAGGCTGCGCGGTGAGGAGGCGGCCGGAGAATAGCGGCGGCG
GGGCGGGGCGAGAGAGAGGGTGGAAGCGTTGGGAGCGGAGGGACTGCTCGTGTCCCCGACAGGCGGGCCAGGGGGGACAA
GGGCGTGCGTCCAAGCCGTCCGCGCGCGTCCGTTTCACCCCAAACCGAGCGCAAGTTTGGGCCGAGGATGGGTTGAAAAC
AGACGGAATCCGGACATTTGTCCGTTTGAGGCCGTGCGCTGGGCTGCACTATTCGTCTGTTTTACCCCAAACGGACGGGG
GCGGACAGGATAGGGTCACGCGGTGGAGTTGGCCTAAAGGCATCCACAACACTCATGATGACAGGACAGCCAAGTGCGTG
ACCTTTGCTTCTGGAGCAATCTCGCCGCACCTTTTGCCCCGCGCAACGCCGTGGTGGATGCATCTCACGTGTGTTGCCTC
CAGTTGCAACAGCCATCATGGCGTGTCGCTGCAAGTGCTACGCTCGAGCTGTGCGCTGC----AGCTGCCCCTCCAGTCT
GCCTTCGCTGGAACTTTA--------------------------------------------------------------
--------------------------------------------------GG--------------------GTGTTCTC
TGAACCTCTTTAGTTCAAATAAATGAACTGAATTTTCCAAAGTCGCATAACTTTTGAAATTTTAGTTCAACAGAGGGTGC
CGTGGGGGTCACAACTTTGCATCCCTAGCTGAGAGATTGGAAAAGAGACTTAAAGAGTTGATTCAAATGCCAGTAAGACC
ATACACCTACACTCCAAATTCAGCACAGAATATTGTATGCAAAGAGACCTCC--GATTTGACCAAGTTGGAAGTCAGATA
TTTGATTCCTGTATCCAT-----------------------------GCTTAGTTCAGACCACTTACCGCATCCACATAT
ACATATGATTACCCCCTAAAGCTACTAATATAGAAAGAGCAAAATCCCTCAATTATAATACACACTAGTCA
>SNPs
-------S------------------------S-SSSSSSSSSSSSSSSSSSSSS--S-----SS--S---S-SS-S---
------S--S------S-------------S------S--SS-----------------------S----S---------
---S-----SS-SSSSSSSSSS-S-S-SSSS---------------------------S---------------------
------SS----SS--------------S------------------------------------------S-------S
--------------------------------------------------------S--------S--------------
------------S----S-----------------S--------------------------------------------
-------S-----------S----------S-----------------------------S-------------------
---SSSS--S-----------SSSSSSSSSSSSSSS---------S----------------------------------
-----------S-----S-----------SSSSS----------------------------------------S--S--
-------------S-------S---------------------------S------------------------------
-------------------------------SS--SS--S--------------------------------------S-
-SS---------SSSSSSSSS-----------------S-----------------S-----------------------
--------------------------------------------------------------------------------
-----S---------------------------SS----S-------------------S--------------------
--------S--------------------------------------------S--------------------------
-SSSS----------------------------------------SSS----S--S------------------------
--------------------------------------------------------------------------------
------------S-----------------------------------------S----------S--------------
------------------------------------S-------------------------------------------
-------------------S----S-------S-------------S-----------------------S------S--
-----S--S-S-------------------------------SS----S-------------------------------
--S----------S--S------S---------------S----------------------------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
------S--------S-------------------S-----S-----------------------SS-SSS--------S
-------------S----------------------------S-------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
-------------S-------------------------------------------S---S-------S-S-S------
SSS---------------------------------------------------S-----S----S----------S---
--------------S---------S--------SSSSS--SS-S---S---S-SS--S----------------------
----------------------------------------SS--------------------------------------
---------S--S--S--------------------S--------------SS-S-S-----------------------
-------S------S-S--S----------------------------------------------SS------------
-----S-------------------SS-----------------S---------------S--S----------------
--SSSSSS----------------------------------------S--------S--S--------------S----
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------------------------S--------------------S----------------------------------
----------S-----S-------------------S--S---S--------S-S---S-SS-SS--------S--S---
-S---------S-------------------------------------------------------------S------
---------------------------------------------------------------------S-----S----
-S---------------------------------------------SS-----------S-------------------
----------------------------S-S-------------------------------------------------
------------S-----------S-------------------------------------------------------
---------------------S------------S-----------------------------------------S---
----S---------S-----------S-S--------------S--S---------S-S------------------S-S
--------------------S--------------------------------S----------S--S------------
----------S---------------S---S---------S-------------SSSSSS-------------------S
-S---------------------S---------------------------------------------------S----
--------------------------------SS-S-SSSSS-SSS--SS-SS--------------------S------
-----SSSSS----------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------S--------------------SS---------------
--------------------------------------------------------------------------------
--------S-----------------------S-----------------------------------------------
S--S---------SSS--SSSS--SS---S----------------------------------S---------------
-S----S---------------S--------SSSS-----------------SSSSSSSSSSSSSSSSSSSS--------
-----------S------SS------------S-----------S--S--------------------------------
-------------------S--S---------------------------------------------------------
---------------S------------------------------------SS--------------------------
--------------------------S------S------SS-----------------------S--------------
---------------------------------------------------S-------------------
>forward_658
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------CT
CCGTCCAGCCACAAGATT--------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2657
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----------------CTCTGCACAAGGAAGCTCCA--------------------------------------------
--------------------------------------------------------------------------------
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>forward_1927
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-------------------------------------------------------------------CCCGCCATTGACT
CTCCTTT-------------------------------------------------------------------------
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>reverse_3996
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---------------------------------------------------------------------------AGTTG
AGTGCTGTCGTCTGG-----------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------
