>input_sequence_31519
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-------------------------------------------------------------------------------A
TGGCCGCGTCCCTCCGCTCCCCGCCGCCCGTGCCCGCCGCCACCGCCTTCCGCCGCTGCCGCGCCGCCGTCGTCGTCTGC
GCCTCCTCCTCTTCCTCCTCGTCCTCGTCCTCCGCCGTGTCGTCCGCTCCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGA
GTCCACCTCCGTCCAGCAGCTCGCACGCCCCCTCGGTACGACAACTCT--AGCCCCGACCAGGAGCCTCCG-----CTCA
CCTACCCCAGCGATCTC----CTGACACGTCACTGTCTGTCTATCTGTCTGCA------------TATGCAGCGGAGTAC
ATGGGCCTGCCGGCGAGCCAGTACTCGGTGCTGGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTA
CGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTCCTCCTCGTCCGCGTCGACGAGGAGCCCAACGGCTGCT
GCATCCGCCTCCTCTCATGCAAGGCAAGCATCAAGCATCCTGCAGTAA----CTAGCTACTCAGTGCCTCACTAATGGCG
GCGGATGATGTGCCTGCGACTAGCAAATTCTGAAAAATGTTTT-GGTTATGCAGCTGGAGGGATCACCCCTTGTGGAGGC
GCAGAATGACAAATTCTCGGGTGAGGTTGTCCGCCTCTTCATGTTTGTATTGCCGTTGCTGA-----------ACCAGAC
AGATTGCTTAGCCTGCTAGACTAGAGCTGCCTGATACTAATTCAGTCACTGTCTCAATGGCACTGCACGTAATTTTGAAT
TACGATGATGGGATCAATTTCTCAATGAAGCTTTGTAATTCATTTAATTACGATGATGTCAGATAG----GATTACGCAA
ATCACGTGGATTGTGAAATACCATTGCATTTGTACTGGACGAGTAAACTACGAAGAGGTGACCAAAAGAAGCCCATCAAT
CATAGTGATGCATACGACGTTTTGGTTTCCTCTGCTTGTCACGGTTCATCCTTAGTTGTC---GTGATCACTGTTTTCTT
GGGTTGTTTGTTTTTTGCACTTATCTAACTAAATAATTGGTACATCCAAAAAAAG-AAA---------------------
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----------------------------------------------------CTCAATAGTTTGTATGCACAATCCACAC
GGTAAAAAATAATTGGAGGGACTTTCTTTCGTCAGACTTAGTGGCAGAATGGAGTTGCATGATTCACTCTATGTTAATTA
ATACGCATGATTTCATAGTTGTATTTAGCATTTCGAAAA-TTAAATATTCAATTGTTGTTCCAGGAAATCATTGACATGA
TTTAATGTCGGATGCAGCTTCCATGGTGAATAGGGTTTTCTGCAACAGCAGTTCAGAGGGTTCGACGCTTCAACAACTTA
CATCGGATGCTACAATCGAGGTAATTCAGTCTCTGGCTCTCAGCTGGCTTCATCTCTAAACATCACTGGAAGTTCTTGGG
CTGAACCATATT------TGTATGATAATTTTCAGGTTGCAATTGACATTCCCTTTCCATTTCAAGCACTACCAGTTGAA
GCTATTGAATCAAGTGGCAGGCAAGTGCTTGAGCAGTTACTCCGAGTCATGCTTCCACGATTTCTGAAGCAGGTCAGTAA
AATACTGCGTTGCCTTTTCCCTATGACAGCCTTTTGTTTAGTCCATTT--TTTATCAGCTCAGCTTGCATTTT--TTTTC
TTCGATGCACTGTGTTTGAGG-AAAAAAAATTCTTCAATGTACTGACTCATTTTTTACCATTGCAA--------------
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------CCTCATATAATTTTGTGATAGAGTAAACTCAAGGATGTGTTGTTCTACTTCTATGCAAGTAATAAAGTAATGGT
GCGTCAAGTTCAGAAGATTTTTTT---CTGAAAATCAAAGTCTCCTTCATTTCATTACTCATATATGAAGTTATGAACTA
GATCTATGTTGATTAGTTATATTTCAAAAACACACAGAACACTTGCGCACAGTTGCATATCAGATAGAAAAAGTACAAGG
ATTCATGCCCACACCCAGGCGATACAGCGTGCCTTACCGCAGTGTTAAAGAACGCTAATATTCTAGCCTGTGCCAACTAA
CTTGGAGCACGGCACTGGGGCCTGACGCTCCTACCGTGCCCCAATAACTCGCTCCAGCTGGGTGCTGCATATAGGGGCAG
AACATCAGGTTGGTTAGTTACCATTGAGCAGGCATCGGCATGCTTATTGGTTATCACTTATCAACGCTCGTTT-CTTGAT
GAAACCGCCAGCGTGGCCACTGTTATCACATTTCCTTTCTGCCACATTCATCGATATCTGAACTGTCACTTATGGTCCAT
-TTCACTTCACTTGCGTTCTGTTCAATCATATCTCATATATTATTGAACTAGATGACTCCCAAAAGTTCATATATGGATT
AGGTTATGCTGATTAATGCCAGCTGGAAGTGTCTCGAGTCGAACCATCTGTTGTCTTCAACACTTGCTGTATTTATGTTG
ATACTTGGCCCAACATTATCTACTGAATTTTGTGGTTGTTTCTTTCAGCTTGATAAAGACTACCAAGCTTGGGCTTCCGG
CGATTCTTCAAGGAAACCACTTGGCACTGGGGAAATATGA----------------------------------------
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>chr4D_1_TraesCS4D01G309400
CAATCTTCAGTGGTTAACATGCCCTATCCCAAGTTGGCGTTGAAATACTTTGGTTCGTTCAAAGTCATCACAAAAATTGG
AGCTGCGGCTTACAAACTGGAATTACCCAAAGGAAGTCAAATTAATCTGGTGTTTCATGTCTCTCAATAGAAATCACATG
TGCCAGACCACACACCAGTGTTCACAGTGTTACCGAAACTTCTGGATTTATCGGTTCCAGGCGTGTTACCTGAACAGATA
CTGGACATGCGCTTGGTCAAGAAAGGTAATGCGGCTCATTTGCAGGTACTGATCAAATGGACTTCGGTACCAGAGTCAGT
AGCTACTTGGGAAGATTACGAAGTGGTCAAAGCACGATTCCATGATGCACCAGCCTGGG-ACCAGCTGGTTCTCAAGGGA
AGGGCAATGTCAGTTTCGAGCTACTGTCATCGGGCGTCAACCAAGGCGGAAGGCGTATTCAAAAGAAGAAGACGTAAAGG
AAGTGGCGGGAGGTTCGAACTGGTGTGGGCTTGTACCGCGTGGGCTTGAGTGCGTGTAGCGGGCCATGAGCCGTGTGTAA
TGAGAATAGC--ATATAAGCTGACTGTGGGGGTCCGTTCGGGGCATCATTGAAATGGAAATTCGAATTCTAGCTTATCTC
TCTGAGCTTCTCTCTCTATCGTCGC-------------------------CGTCCGCATCTCTCTTGCCTGCTGACCTCG
TCTTCCCCGGCCAACCTCACCGGCGACGAGCCCCAAATCCGGCGGCCTCCTTCGGCCAAAGGCAAGGGTGTGAGAACGGT
CGTTACAGTTTCCAGGGCCCCACATTCCAGCAGAAGAGATTCCTCTCCTGGCCCACCCGA--TGGTAGGGCCGACCCGAT
CCAGACCCCTACCCATCCCAACTGGATCTTATCCGTCCAATGCGAACGAGGAAGAAGATCCACCCAACACAAAATTCCTC
GCCTCTCCCCACACCACACACGGCAAAGGCCCGGTGGTGC----CCGCGGGGAAGC-----AGCCGACCGACGCCCCCAA
TGGCCGCGTCCCTCCGCTCCCCGCCGCCCGTGCCCGCCGCCACCGCCTTCCGCCGCTGCCGCGCCGCCGTCGTCGTCTGC
GCCTCCTCCTCTTCCTCCTCGTCCTCGTCCTCCGCCGTGTCGTCCGCTCCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGA
GTCCACCTCCGTCCAGCAGCTCGCACGCCCCCTCGGTACGACAACTCT--AGCCCCGACCAGGAGCCTCCG-----CTCA
CCTACCCCAGCGATCTC----CTGACACGTCACTGTCTGTCTATCTGTCTGCA------------TATGCAGCGGAGTAC
ATGGGCCTGCCGGCGAGCCAGTACTCGGTGCTGGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTA
CGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTCCTCCTCGTCCGCGTCGACGAGGAGCCCAACGGCTGCT
GCATCCGCCTCCTCTCATGCAAGGCAAGCATCAAGCATCCTGCAGTAA----CTAGCTACTCAGTGCCTCACTAATGGCG
GCGGATGATGTGCCTGCGACTAGCAAATTCTGAAAAATGTTTT-GGTTATGCAGCTGGAGGGATCACCCCTTGTGGAGGC
GCAGAATGACAAATTCTCGGGTGAGGTTGTCCGCCTCTTCATGTTTGTATTGCCGTTGCTGA-----------ACCAGAC
AGATTGCTTAGCCTGCTAGACTAGAGCTGCCTGATACTAATTCAGTCACTGTCTCAATGGCACTGCACGTAATTTTGAAT
TACGATGATGGGATCAATTTCTCAATGAAGCTTTGTAATTCATTTAATTACGATGATGTCAGATAG----GATTACGCAA
ATCACGTGGATTGTGAAATACCATTGCATTTGTACTGGACGAGTAAACTACGAAGAGGTGACCAAAAGAAGCCCATCAAT
CATAGTGATGCATACGACGTTTTGGTTTCCTCTGCTTGTCACGGTTCATCCTTAGTTGTC---GTGATCACTGTTTTCTT
GGGTTGTTTGTTTTTTGCACTTATCTAACTAAATAATTGGTACATCCAAAAAAAG-AAA---------------------
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----------------------------------------------------CTCAATAGTTTGTATGCACAATCCACAC
GGTAAAAAATAATTGGAGGGACTTTCTTTCGTCAGACTTAGTGGCAGAATGGAGTTGCATGATTCACTCTATGTTAATTA
ATACGCATGATTTCATAGTTGTATTTAGCATTTCGAAAA-TTAAATATTCAATTGTTGTTCCAGGAAATCATTGACATGA
TTTAATGTCGGATGCAGCTTCCATGGTGAATAGGGTTTTCTGCAACAGCAGTTCAGAGGGTTCGACGCTTCAACAACTTA
CATCGGATGCTACAATCGAGGTAATTCAGTCTCTGGCTCTCAGCTGGCTTCATCTCTAAACATCACTGGAAGTTCTTGGG
CTGAACCATATT------TGTATGATAATTTTCAGGTTGCAATTGACATTCCCTTTCCATTTCAAGCACTACCAGTTGAA
GCTATTGAATCAAGTGGCAGGCAAGTGCTTGAGCAGTTACTCCGAGTCATGCTTCCACGATTTCTGAAGCAGGTCAGTAA
AATACTGCGTTGCCTTTTCCCTATGACAGCCTTTTGTTTAGTCCATTT--TTTATCAGCTCAGCTTGCATTTT--TTTTC
TTCGATGCACTGTGTTTGAGG-AAAAAAAATTCTTCAATGTACTGACTCATTTTTTACCATTGCAA--------------
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------CCTCATATAATTTTGTGATAGAGTAAACTCAAGGATGTGTTGTTCTACTTCTATGCAAGTAATAAAGTAATGGT
GCGTCAAGTTCAGAAGATTTTTTT---CTGAAAATCAAAGTCTCCTTCATTTCATTACTCATATATGAAGTTATGAACTA
GATCTATGTTGATTAGTTATATTTCAAAAACACACAGAACACTTGCGCACAGTTGCATATCAGATAGAAAAAGTACAAGG
ATTCATGCCCACACCCAGGCGATACAGCGTGCCTTACCGCAGTGTTAAAGAACGCTAATATTCTAGCCTGTGCCAACTAA
CTTGGAGCACGGCACTGGGGCCTGACGCTCCTACCGTGCCCCAATAACTCGCTCCAGCTGGGTGCTGCATATAGGGGCAG
AACATCAGGTTGGTTAGTTACCATTGAGCAGGCATCGGCATGCTTATTGGTTATCACTTATCAACGCTCGTTT-CTTGAT
GAAACCGCCAGCGTGGCCACTGTTATCACATTTCCTTTCTGCCACATTCATCGATATCTGAACTGTCACTTATGGTCCAT
-TTCACTTCACTTGCGTTCTGTTCAATCATATCTCATATATTATTGAACTAGATGACTCCCAAAAGTTCATATATGGATT
AGGTTATGCTGATTAATGCCAGCTGGAAGTGTCTCGAGTCGAACCATCTGTTGTCTTCAACACTTGCTGTATTTATGTTG
ATACTTGGCCCAACATTATCTACTGAATTTTGTGGTTGTTTCTTTCAGCTTGATAAAGACTACCAAGCTTGGGCTTCCGG
CGATTCTTCAAGGAAACCACTTGGCACTGGGGAAATATGAAGCTGACCATAGGCATAA-GATAGCTTTTCTTGT---TTA
ATCTAGTTGATGTGGTCGTACATGATCCACTTCCTC---ATGATAGTCTGTCCTTGGAAAACTCTCGTGGTTGTATATTA
TGATCCCACCGTCATATGATCGATCCATTTGCTTCTTTCTGCTGGTTCGTTTAACTGCTTGTGGGCTTGTGGTCATCGGC
CGCACTTTCAGTAAAACACAGGAATTGCATTCTGCCTAT-----------------------------------------
-------------------------------------------------------------------------------G
GTTTTCAGTAATTGCAAGAGCAATTGCATGGAGCCACTGCCACTAGCAGCTAGCGGTATGGCCATGGCAATGTAAGTACA
GAGCGGGTGTTTGCAACGCTGATATTGATGTTGGCAGCAATACGTGCTGTCTGTCTCTGTGCTGGTTTCACGGCGTGAAG
AATTCATGCGGAGGAGACGATGGTAGACA-------------------------GGTTCAGAGTTGGTTGGCAAGTCGAT
GTGCACCAAGACGACCAACAGGTGCAAACTTCAGTGGAAGGAATGATGAGGGA------------------------CCC
AAGTTATATAGATACATAAGATAGATAAGCTAAA-CTATGTGCTGATGCTCGAAGCAAGGAAAGAGCCAGCACCGCAGGG
GTTGTCCTGGAGATAAACTATGCGCGCGCCCCCGACTA------------------------------------------
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---------------------------------------------------------------------------AGCTT
GGCACACTCGTCAGCGACTT---ACGTCCGAATTTCCAAACATTTTTGTAACCTGAATTTCAGAGATAAGCGCTGAAAG-
---------------------------------------------------------------------ATTTTAGCTGA
GAGATAGATACCGTAGGGTGAAGATTCAGAGAAGCAGAACCTGGAATACCGTAGGGTGAAGATTCAGAGAAGCAGAACCT
GGAAACCTCGGGCACTCTCTGCAAACCTTTTTTTTAGATGCTCTGCAAACTGTTGAAGATACCGAATCATGAGCGGCAGA
GGGGAAGAGGACGGCCGTATAACGACGGACGGGCGCAGCATGATAGAGCGGCACGTTCCGCTGCCGATGGGTCGAGATCA
A-------------ACTGTGGTTCAATCTCTCCGCATCTCATTGTCAGTTTCCCTCGGCC
>chr3B_1
CAATCTTTAGTAGTTAACAGGCCCTGTCCTAAGTTGGCATTGAAATACTTTGGTCCGTTCAAAGTTATAGCAAAAATTGG
AGCTGTTGCTTACAAGCTAGAATTGCCCAAAGGAAGTCAGGTTCATCTAGTGTTCCATGTCTCACAATTGAAGTCTCATG
TGCCAGACCACACACCAGTGTTCACTGTGCTGCCCAAGCCTCTGGATTTATCAGTACCAGGAGTGCTGCCTGAACAGATC
ATGGACAGACGATTGGTCAAGAAAGGCAATGCGGCCCATTTGCAAGTGCTGATCAAATGGACGCCAGTACCAGAGCCATA
TGCTACTTGGGAAGATTATGAAGTGTTGAAAGCACGGTTCCCGGATGCACCAGCCTGGGGACCAGCTGGTTCTCAAGGGG
AGGGCAATGTCGGTATTGAGCTACTGTCATTAGGTGTCAAGCAAGGGGGAAGACGTATTCAGAAGA---AGGCGTAAAGG
T-GTGACGGGAGGTTTGAATAGATAGGCGGTTCCAGT--GTGGGCTTGCGTGTGTTTAGCGGGCCTTGGGCCATGTGTAA
TGAGGACAAC--ATATAAGCTGACCGAGGAGGGCCGTTCGGGGTATCGTTGAAAT-GACATTTGAATTCTAGCTTATTTC
TCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTGCGTCTGCATCTCTCCCACCTGCTTATCCTC
T-TCCTCCGTCCAACCTCGCCGGCGACGAGCCCCAAGTATGGCGGCCTCCTTTGGCCAAAGGCAAGGGCGTGACAA----
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>chr1B_217
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--------------------------------------------------------CCAGGAGTGTGTCCGGAGCAGATC
CTCGACAGACGTTTGGTCAAGAAGGGCAACGCAACGCATTTGCAAGTGCTGATCAAGTAGACGTCGGTGCCATATTCAGC
GGCTACTTGGGAGGACTATGAAGTGCTCAAAGCCCGGTTCCTGGATGCACCAGCATGGGGACCAGCTGGTTCTCAAGGAG
AGGGCAATGTCAGTATGGAGATATTGTCACTAGCCGTCAAGCATGGTGGAAGTCATATTCGGAAGACGAAGGTGTAGAGT
G-TTGGCGGGAGATTTGAATAGATTGGCCAGCCCTGT--GTGGGCCTGGGTGAGTGTAGCGGGCCGTGGGCCGATTATAA
CGGGGGCAGCGTATATAAGCTGGCCGTGTGGAACCGTGCAGGGTATCGTTGAAAT-GAAATTTGAATTCAC---------
---------------TTCTCTCTCTCCGTCTCTCTCTCTCTCTGA-GTTGCGTCCGCATCTATCTCTCCTGCTGATCCCC
T-TTCTCTGCCCGATCTCGCCGGCGGTGAACCCCAAATCCGGCGGCCTCCTTCGGCCAAAGGCAAGGGTGTGA-------
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>chr4A_767
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--------------------------------------------------------------------------AACGAT
GGTTACAGTTTCCGCGGCCCCACATTCCAGCAGAAGAGATTCCTCTCGTGGCCCACCCGA--TGGTAGGGCCGACCCGAC
CCAGACCCTACCCATCCCCAGCTGCATCTTATCCGTCCAATGCGAACGAGGAAGAAGATCCATCCAACACAAAATTCCCC
GCCTCTCCCCACACCACACACGGCAAAGGCCCGGTGGTGC----CCGCGGGGAAGCAGCCGAGCCGACCGACGCCCCCAA
TGGCCGCGTCCCTCCGCTCGCCGCCGCCCGTGCCCGCCGCCTCCGCCTTCCGCCGCTGCCGCGCCGCCGCCGTCGTCTGC
GC---CTCCTCATCCTCCTCGTCCTCCTCCTCGGCCGTGTCGTCCGCTCCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGA
GTCCACCTCCGTCCAGCAGCTCGCCCGCCCCCTCGGTAACGCCCACCCTCAGCCCCGACCAGGAGCCTC----------A
CCTCCCCCAGCGATCTCCTGGCTGACACGTCACTGTCTGTCTGTCTGTCTGTATGTCTGCATATGTATGCAGCGGAGTAC
ATGGGCCTGCCGGCGAGCCAGTACTCGGTGCTGGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTA
CGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTCCTCCTCGTCCGCGTCGACGAGGAGCCCAACGGCTGCT
GCATCCGCCTCCTCTCCTGCAAGGCAAGCATCCAGCATCCTGCAGTTACTAGCTAGCTACTCAGTGCTTCACTAATGGCG
GAGGATGATGTGTCTGCAACTAGCGAGTGCTGAAAAATGTTTTTGGTTGTGCAGCTGGAGGGGTCGCCCCTTGTGGAGGC
GCAGAATGACAAATTCTCGGGTGAGGTTGTCCGCCTCTTCATGTCTGTATCGTCTTCCATTGTTGGGCCAGATACCTGGC
ACATAGCTTAGCGTGCTAGACTAGA-CTGCCTGATACTAATTCAGTCACTGTCTCAATGGTACTGCACGTAATTTTGAAT
TACGACGATGGGATCAATTCCTCAAAGAAGCTTTGGAATTCATTTAATTATGATGATGCCAGATAGCATGGATTACACAA
ATCACGTGGATTGTGAGATGCAATTGCA-TTGTACTGGACGAGTAAACTACAAAGGGGTGACCAAAAGAAGCCCATCAAT
CATAGTGATGCATCCGACATTTTGGTTTCCTCTGCTTGCCACGGTTCATCCTTATTATTTGCTGTGGTCACTATTTTCTT
GGGTTGTTTGCTCTTTGCATTTATCTAACTAAATAATTGGTACATTCAAAAAAAGGAAA---------------------
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----------------------------------------------------CTCAACAGTTTGTGTGCGCAATCCACAC
GGTAAAAAATAATTGGAGGGACTTTCTTCCGTCAGACTTAGTGGCACAACAGAGTTGCATGATTCATTCGATGTTAATTA
ATACACATGATTTCGTAGTTGTATTTAGCATTTCGAAAAATTAAATATTTAATTGTTGTCCCAGGAAATCATTGACATGA
TTTTCTGTCGGATGCAGCTTCCATGGTAAATAGGGTTTTCTGCAACAGCAGTTCAGAGGGTTCGACGCTTCAACAGCTTA
CATCGGATGCTACAATCGAGGTAATTCAGTCTCTGGCTCTCAGCTGGCTTCA--TCTAAACATCACTGGAAGTTCTTGGG
CTGAACCATAACCATATCTGTATGATAATTTTCAGGTTGCAATTGACATTCCCTTTCCATTTCAAGCACTACCAGTTGAA
GCTATCGAATCAAGTGGCAGGCAAGTGCTTGAGCAGTTACTCCGAGTCATGCTTCCACGATTTCTGAAGCAGGTCAGTAA
AATACTGCTTTGCCTTTTCCCTATGACAACCTTTTGTTTAGTCCATTT--TTTATCAGCTCAGCTTGCAATTTTAATTTC
TTCGATGCACTGTGTTTGAGGGAAAAAAAAATCTTCAATGTACTGACTCGTTTTTTCCCATTGCAA--------------
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------CCTCATATAATTTTGTTATGGAGTAAACTCAAGGATG---TGTTCTACTTCTATGCAAGTAATAAAGTAGC---
GCGCCAAGTTCAGAAGATTTTTTTTCTCTGGAAATCAAAGTCTCCTTCATTTCATTACTCATATATGAAGTCATGAACTA
GATCTATGTTGATTAGTTATATTTCAAAAACACACAGAATACTCGCGCACAGTTGCATAAATAGAA-AAAAAGTACAAGG
ATTCATGCTCACAGCCTGGCGATACAGCGTGGCTTACCGTAGCGTCAGAGAGCGGTAATGTTCGAGCCTGTGCCAACTAA
CTTGGAGCACGGCTCTGAGGCCTCACGCTCCCACCGCACCCCAGTAACTCGCTCCAGCTGGGTGCTGCATACAAGGGCAG
AACATCAGGTTGGTTAGTTACCATTGAGCAGGCATCCGCATGCTTATTGGTTATCACTTATCAACGCTTGTTT-CTTGAT
GAAAC------CGTGGCCACTGTTATCACATTTTG-TTCTGCTACATTCATCGATATCTGAACTGTCACGCATGGTCTAG
-TTTACTTTACTTGCGTTTTGTTCAATCATCACT-CTCATGT-TTAAACTAGATGACCCCTAAAAGTTCATATATGAATT
AGTTTATGCTGATTAATGCCAGCTGGAAGTGTCTCGAGTCGAACCATTCGTTGCCTGCAACACCTCTTGTATTTGTGTTG
ATACTTGGCCCAGCACTACCTGCTGATTTTTGTTGCTGTTTCTTTCAGCTTGATAAAGACTACCGAGCTTGGGCCTCGGG
CGATTCTTCACGGAAACCGCTTGGCACTGGGGAAATATGAAGCTGACCATAGGCGTAATGATAGTTTTTCTTGT---TTA
ATCTAGTTAATGTGCTCGTACATGATCCACTTCCTC---ATGATAGTCTATCCTTGGG-AACTCTCGTGGTTGTATATTG
TCATCCCACAGTCATTTGATCGACCCAT----------------------------------------------------
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>chr4B_776
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---TACAGTTTCCACGGCCCCGCATTCCAGCGGAAGAGATTCCTCTCCTGGCCCACCCGAGATGGTAGGGCCGACCCGAT
CCAGACCCCTACCCATCCCAACTGCATCTTATCCGTCCAATGCGAACGAGGAAGAAGATCCATCCAACACAAAATTCCTC
GCCTCTCCCCACACCACACACGGCAAAGGCCCGGTGGTGCGCGCCCGCGGGGAAGC-----AGCCGACCGACGCCCACAA
TGGCAGCGTCCCTCCGCTCCCCGCCGCCCGTGCCCGCAGCCGCCGCCTTCCGCCGCTGCCGCGCCGCCGCCGTCGTCTGC
GCCTCCTCCTCTCCCTCCTCGTCCTCGTCGTCGGCCGTGTCGTCCGCTCCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGA
GTCCACCTCCGTCCAGCAGCTCGCCCGCCCCCTCGGTACGACAACCCT--AGCCCCGACCAGGAGCCTCACCTCACCTCA
CCTCCCCCAGCGATCTC----CTGACACGTTACCGTCCGTCTGTCC------------GCATATGTATGCAGCGGAGTAC
ATGGGCCTGCCGGCAAGCCAGTACTCGGTGCTGGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTA
CGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTCCTCCTCGTCCGCGTCGACGAGGAGCCCAACGGCTGCT
GCATCCGCCTCCTCTCATGCAAGGCAAGCATCGAGCACCCTGCAGTAA----CTAGCTACTCAGTGCCTCACTAATGGCG
GCGGATGATGTGTCTGCGACTAGCAAATGCTGAAAAATGTTTT-GGTTGTGCAGCTGGAGGGGTCACCCCTTGTGGAGGC
GCAGAATGACAAATTCTCGGGTGAGGTTGTCCGCCTCTTCATGTTTGTAACGTCTTTCCGTTGT------GATACCTGTC
AGATTGCTTAGCGTGCTAGACTAGAGCTGTCAGATATTAATTCTGTTATTGTCTCAGTGGCACTGCACCTAATTATGATG
AC-------GGGGTCAATTCCCCAAAGAAACGTTGGAATTCGTTTAATTC---TGATGCCAGATAGCATGGTTAAAACAC
ATCATGTGGACTGTGTGATACAATTGCA-TTGTACGGGACGAGTAAACTACAAAGGGGTGACCAAAAGAAGCCCATCAAT
CATAGTGATGCATACGGCATTTTGGTTTCCTCTGCTTGTCACGGTTCATCCTTAGTTGTG---GTGATCACTGCTTTCTT
GGGGTGTTTGCTCTTTGCACTTATCTAACTAAATAATTGGTGCGTCCAAAAAAAAAAGAAACTCAGGCCTCGTTCGGTTT
GCAGGAAAAACAAAGGAAATCTGCATGTTCGAAAACCCGTAGTTTTGTACCTCTGAACCGTTCGCCTCGTAGGAAAGTGC
TACAGAAGTTTGGAGGAAATACTGTCTTGGAGGGCTCATTCCACAGGATTGCAAAAATCCAGTTGAACCTCATTTCTGGG
CGGATGCCCGAGAGAAGGCAACACCACTCAAATAAACAATTGAACTGTACCAGCCATGCATGAGGAAAAAGACAATCTGA
GAGAGTACATGCGGATAAAAAATAGCATAGGATCTGCCATGGCCTACACAGTCTTGGCCAGTAACAAAGTATTTTTTACA
ACTATGCTTCGAACACCCCGCAGGCTTCTCTTCCTTCGCTTTATAACCCTATGGTCTGCTACTGTACAATCAATCATATT
CCTTTGCAGTTTTTTGGTCCTGTATTTTCTATACATGCAAACCGAACGCAGCCTCAATAGTTTGTATGCACAATCCACAC
GGTGAAAATTAATTGGAGGGACTTTCTTTCGTCAGACTTAGTGGCACAATGGAGTTGCATGATTCACTCTATGTTAGTTA
ATACACGTGATTTTGTAGTTGTATTTAGCATTTCGAAAA-TTAAATATTAAATTGCTGTTCCAGGAAACCATTGACATGA
TTTCCTGTCGGATGCAGCTTCCATGGTGAATAGGGTTTTCTGCAACAGCAGTTCAGAGGGTTCGACGCTTCAACAGCTTA
CATCGGATGCTACAATCGAGGTAATTCAGTTTCTGGTTGTCAGCTGACTTCA--TCTAAACATCACTGGAAGTTCTTGGG
CTG------AACCATATTTGTATGATAATTTTCAGGTTGCAATTGACATTCCCTTTCCATTTCAAGCACTACCAGTTGAA
GCTATTGAATCAAGTGGCAGGCAAGTGCTTGAGCAGTTACTCCGAGTCATGCTTCCACGATTTCTGAAGCAGGTCAGTTA
AATACTGTTTTGCCTTTTCCCTATTGCAGCCTTTTGATTACTCCATTTTTTTTATCAGTTCAGCCTGCATTTTAATTTTT
TTCAATGCACTGTGTTTGAC-----AAAAATTCTTCAATGTACTGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCCTCATATATTTTCGTGATGGAGTAAACTCAAGGCTGTGTTGTTCTACTTCTATGCAAGTAATAAAGTAATGGT
GCGTCAAGTTCAGAAGATTGTTTT---CTGGAAATCAACGTCTCCTTCATTTCATTACTCGTATATG--------AACTA
GATTTATGTTCGTTAGTTATATTTCAAGAACACACAGAATACTTGCGCACAGTTGCATAGTAGATAGAAAAGGTACAAGG
ATTCATGCCCACACCCTGGCGATACAGCGTGCCTTACCGCAGCGTTAAAGAACACTAATATTCTAGCATGTGCCAACTAA
CTTGGAGCACGGCACGGAGGCCTGACGCTCCTACCGTGCCCG-ATAACTCGCTCCAGCTGGGTGCTGCATACAGGGGCAG
AACATCAGGTTGGTTAGTTACCATTGAGCAGGCATCCGCATGCTTATTGGTTATCACTTACCAACGCTCGTTTTCTTGAT
GAGACCGCCAGCATGGCTACTGTTATCACATTTCC-TTCTGCCACATTCATCGATATCCGAACTGTCATGTATGATCTAG
TTTTACTTTACTTGCGTTTTGTTCAATCATCACTTCTCATGT-TTAAACTAGATGACCCCCAAAAGTTCATATATGGATT
AGTTTATGCTGATTAATGCCAGCTGGAAGTGTCTCGAGTCGAACCATTTGTTGCCTAAACCACTTGCTGTATTTATGTTG
ATACTTGGCCCGACATTATCTGCTGATTTTTGTTGCTGTTTCTTTCAGCTTGATAAAGACTACCAAGCTTGGGCCTCGGG
CGATTCTTCACGGAAACCGCTTGGCACTGGGGAAATATGAAGCTGACCATAGGCGTAATGATAGCTTTTCTTGTTTATTA
ATCTAGTTGATGTGGTCGTACATGATCCACTTCCTCCTCATGATAGTCTGCCCTTGGAAAACTCCCGCGCTTGTATATTG
TCATCCCACTGTCATTTGATCGATCCACTCGCTTCTTTCTGCTGGTTCGTTTTAAACTGCTTGTACTATGCTGGAACAGA
TAGATATTTTATCTCTCCATCAGTTGATCCAAAACTGAAAAGAAAAACGGAAACGAGAGAGAGCAAGTGAGAGATATATA
GAGCAAAAACAGTCAAACTGTAGAGGTAAACTACTGCATCCAGTTTACAAATTACAAGGGCAATGGTCAGTGCTAACTAG
GTCTACAGTAATTGCAAG--------------GCCACTGCCACCAGCAG---------------------TGTAAGTATA
GAGCGG-TGTTTGCAACGCTGATATTGATGTTGGCAGCAGTACGTGC-GTGTGTCTCTGTACCGGTTTCACAGCGTGAAA
AATTCGTTCAGAGTTGGTTGCAATTTTAGAGGGGCTATCTGGTTGCAATTTTCCGGTTCAGAGTTGGTTGGCAAGGCGAT
GTGCACCC-GACGACCAGCAGGCGGGCAGTTGAGTGCAAGGAGTGATGAGAGAGCAGATAATTTTTGGCCCTAATCGCCC
AAATTATATATGG----AAGATAGATAAGCTAAAGCTATCTGCTGATGCTTGAAGCAAAGAAGGAACCAGCACAACAA-G
GTTGTCCTGGTGATAAATTATGTGCGCCCCCAACTAAGTGGCTGTTTGGTTCTAGGCCTAACATTACCACACTTTGCCAC
ATATTTTTACCAAGCTTGCCTAGGGTTAGTTCATCAAAATGAGAGCCACAAATTGGCAAGGCTAAGGGAATCTTACCACA
TTTCTCACGTGTATGCCATGTGAGGCCCGAGTGTGGCTTGCCTAAGATGTGGCTTGAACCAAACACTCACCTAAGTTGGT
CAAACTTGCCTAACTTTAGGTGTGACAATCTTTGGCAAAGTTAGTCACAAATCAAAGCCGTAAATATGTGCGCCCAGCTT
GGCACACGCGTCACTCGTCAGCGACGTCCGAATTTCAATAATAATGAAAAAATCAACCTCCTGACGTAGGAGCAGAGTCC
TGATCCCCACTTCAAAACGAGTAGATTTGTCATCTCAAAGTTACCACAGATGCTGATGGAGACAGTGGAATTTTAGCTGA
AAGATGCTG-CCGTAGGGTGAA----------------------------------TGAATATTCAGATAAACAGAGCCT
GAACCCCTGCGCAAACTGCTGAGGCCAGAGAAGGCC------------------------------------------GA
GAGGAAGAGTACGGCCGTGTAACGACGGACGGGCGCAA----------CGGCACGTTCCGCTGCCGATGGGTCGAGATCA
AGGCCCCCCATCCAACTGTGGTTCAATCCCTCCGCTTCTCCTTGTCAGTTTCCCTCGGCC
>SNPs
-------S---S-------S-----S---S--------S---------------S----------S--SS----------
-----SS--------S--S-----S--------------SS--S----S-----S--------S----S---S--S----
-------------------------S---S-S--S--S-S------------S--S-----S-----S-----------S
-------SS--S--------------S--------S--------S--S--------------S----------------S
S-----------------S------S----------S----SS------------------------------------S
--------------S-S-------------SS--------S-----S-----S--------S----S----S--------
SS-------------S---SS-S-SS-S-S--SS-SSSS---------S---S------------S--S-----------
----S-S-----------------S-------S----------S---S-------S------S--------------S--
---SSSSS-------S-S--SSSSS----------------------------------------SS--------S-S-S
-S---S---S--------S------------------------------------------------------S----S-
S-------------S-----------------------------------------------------------------
------------------------S-------------------------------------S-----------------
--------------------------------------------------------------------------------
-----------------------------------------S---------------------------S----------
--------------------------------S-----------------------------------------------
------------------------S--------------------S-----------------------SS---------
---S--------------------------------------S--------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
------------S---------------S-------------------S-------------S-----------------
--------------------------------------------------S-S-S--S--SS--------------S-S-
------------S-------------------------------------------------------------------
-----S-------------S-----S---------S--------------S-------S-----------------S---
----------------S----S------S----------------------S---S------------------------
------------------S----------------------------------------S--------------------
----------S-S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
----S---------S----------------------------------S------------------------------
---SS----------------------------------------------------------------------S----
----------------------------------------------------SS--------------------------
----------SS--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
-------------------------------------------------S------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
------------------------------S----------------------------------------S--------
---------------------------------------S-------------------SS-------------------
----------------S-------------------------S-------------------------------------
-----------------S-----------------------------------------------------S--------
------------------------------------S-------------------------------------------
-----------------------------------S---------------------------------S-------S-S
---S----S---------S-----------SS--SS-SSSS-S--S-----------S----------------------
--S--------------------------------------------S-----S--S-----------------------
---------------------S----S------S-S--------------------------------------S--S--
----------S-------S-----------------------------------S-------------------------
-------------------------------------------------------------------------------S
-S-------S-----S-------------S----------------------S-SSSSSSS--SS--SSSSSSS-S-S-S
SSS-SS--SSS-SSSS-SSSSSSS-SSSSSSSSS-SS-S-----------------------------------------
--------------------------------------------------------------------------------
--S-S-------------SSSSSSSSSSSSSS-----------S-----SSSSSSSSSSSSSSSSSSSSS--------S-
------S--------------------------------S-------S--S---------S-S--------S-------S
-----S-S-S---SS-SSSSSSS-SSSSS----------------------------------------------S----
-------SS--------S----S-SSS-S--S----S-----S-------S-----------------------------
--S-------SSSSSSS----------------------S----------S-------S---S--S-------SS--SS-
----------S------S----S----S---SSSSSSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-----SSSSSSS----------------S-S-SSSS-SSSS--SSSS-SS-S-S--SS--S-S--S--SSS-
--------------------------------------------------------------------------------
S----SSSSS------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------S--S----S---
-S-SS---SS-SS-SSSS---SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-S-------S--------S------------------SSSSSSSSSSS--------------------------------
----------------------------S------S----S-------------------
>forward_441
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TACTGTCATCGGGCGTCAAC---------------------------------------
--------------------------------------------------------------------------------
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>reverse_2804
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---AATGTCGGATGCAGCTTCCA---------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>forward_517
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AACTGGTGTGGGCTTGTACC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2805
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----ATGTCGGATGCAGCTTCCAT--------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_1759
--------------------------------------------------------------------------------
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-----------------------------------------------------------ATTGCCGTTGCTGAACCAGA-
--------------------------------------------------------------------------------
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>reverse_4331
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----------AGGAAACCACTTGGCACTGG--------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------
>forward_2876
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--------------------------------------------------------AGGGTTCGACGCTTCAACAA----
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>reverse_4968
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-------AAGACGACCAACAGGTGCAA-----------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
