>input_sequence_31434
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-------------------ATGGATCCGCCCAAGCGAGCTGTCC------CCCAAGGTAAACAGCGATCCTCTCCTTGAT
TTCCCCCAATCTTTGTCTGCTGCTTCCTTAATTGATCCGTCCGTTCTTACTCCTATTTGTTCACGCGGCCAGGTTCCCCG
CGACGAAGCCCCAGGGCCATGGAGGGCGACGAGAACGCGGCCCCGAGGCACTCCGCCGCGGCGGGGCCCGCGTCCCCGCA
GAGGAAGAAGGTTCTGGGGGAGCGGAACGGCGCCGGCCGCGGGCAGGAGGGCGCCGCGTCGGCCGCCAAGGCCGCCGCGC
TCACCCCGCCACCTCCCACCGGGGGGACGGGGACGGGGACGTACGACCCGAAGACGAACTACACCACGCCGCGGCCGGAC
TTCCTGCGCTACGACCCCAAGCGGAGCCGCGAGATCATCCTCCGCCTGGGGCGCGAGGTGGAGGGCGGCGACAGCTCCAG
CGCCACCTCGGGCACCGAGCACTCGGAGGTGCTGTCTTCCGGCTCGTCGGCGGCGACAGGGGGCGACTCCGAGTGCGACG
ACGCCGACGAGGAGGAGG---TGGCGCCCGCGCAAGGGCAGGGAGGCCGCTGGGCGCGGCGACTGCTGCTGCTTCTCGTG
TCCTCGGCCTGCCTCTTCTGCTACATCTACTGTATGAGTTCCGC--------TCCCTTCCCTGCTACCACTTCAGAAGGA
CCCATCAGTTTCGTCGGATTGAATGGGAGCATGTGTGATGTCGGTGTTCACGAGGCAGTTCCTCTGCTGGGGCCGATTCA
GTATGAACCTGAGGCAGGTATAGGCCAATTTGTGGAGGGGGGCAGTGACGATGGTATCCCTTTGCACGGCCCAGGAGCTT
CTCCTAGCAACTTCATGGCAGTTGCAATGATGGGAATGGCAGATGCCTGCCCTAATGTTGCCTTCGGAGAATTTACATGC
CAAATTGGGGATGAGAGCAGCGAGATTTTGGATGTTCTGAAGGAAGATTCTGAAATAGGCGAGCTGAAATCGGAAGCGAG
CATGAGGCCACTCGAGAATGCTGAAGAAAATAGTGAAGTTGTATGCTCGGGTGGAGATGTCACTGGAGTTCCCTTTGGAT
CCACCCACAGCGATGATTTGGATGAGGACGAGCTAGGATTAGTTCCTCAAGAGACAGGGGAAGATGATTCAGAACACTCC
ATGCCACCATCGGTCACCATGGATGAAATTCTGGAATCAGAAAGCGTGAAGGTGGTGAGTGATGATAAGGGTTTGGAAAG
TGAGAGGTTAGATCAAGAAGAATTCGACTCGCTGGGGTACGAAAACACAGCAAAAGCTGCCAAGAAACTTGTTGATATGG
TGAAAATCCTGTGGTCTGCAGTGGAACCACATTTGCTGAAGATGCTGGCATGCTTATCTGTTGCAGGCCTTGTGACTGTT
ATGTTCAAGTATTCCCAAAGGTCTCGCAAGGTCAAGGTGCCCGTGTCACAACGTATGCCTTCAGTTCCACCCAGGCGAGT
GCCAGTATTAGCTCCACATAATGCTGTGCCACTGCCGGTGTTCCATTCAGAGCAACCTGTGCAACGGATTGTGCCCAAAC
AAGAGTCATCTGCCTGCTTGGAGCTTCCTGTGCAAACGTTGTTGTCAGAGTCAGATCAATCTGTGTGCCTCGATGTTCCA
TCAATTGGTCG-----------------------------------------------------------------TAGG
GATCATGATCAGAAAGTTCAGCAAGAGGATGGTA---GCG---TTGAAAGGCCTTCAGATGGCAGTACTGTGGATCATAA
AGATACTGACAGATCAAAGCCACCGGTGGTTCAGTTGCTCGGAGAGTTCTCATTTGTCGATGCAGATAGCTCAAGACGGA
GGTCTGTCAAAGACTCAATTCAGCATGCTGGACACGTCACGGTTCAGGAATCCATGTCTTTGAGGAAGCGTGTGGTCAAG
ACGCAAAAGGATTCTGACAAAATGCGAACCCCTGGTCTTGAAGC--AGCAACAAAGAAGGTAAATTCTAGTTTCTTTTCC
AGACATCTTTTGGCATTGTATTTTTGTGTGCGAAGTGTGAGTGCGTCGTATGAGATTATCCTGTCTTTTGAGGAC-----
----------------------------------------ATCTGTTGGCAAATGCATTTTAGTTCCTTCGAAGTTGAGT
TTTAGAATTATCTGAACTTACACCAAACAGGTATTTTGGCCTGATAG-GTGTGTTATTTACTGCAAATTAGACAGCTACA
CAGAAGTAGTTACTAGCTTAGTA-----------------------------------CATTCACATTAGTGGCCACTAT
TATGATATATGTGAAATCATCATTGCTAGTCTTACTTATAA-TCTGATACAGAACACCTTACATTGCACATTTGAAAATA
AATTAAATTAAAGACATCTACG-CAC-------AGTGCTTCAGATTTATCTTATCATTACCATTATCCCCCAGACATTAA
GTTTGGTTTCAAGCTTTTATTCCCC--CACA------------------ATGCTTCAAGCTTGCTATTAACTCG-ATGTG
TTGTTATTCCGTTCAACAGGAGACTGCAAGAGCAGAAGAAGAGAAGGTGGGTGCTACACCGACTCCACCGAGGCGTTCAA
ATCGTCTCCGTAAACTGGCTTCTCCTTGA---------------------------------------------------
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>chr3D_1_TraesCS3D01G301200
AAAACTGTCCACAAACGCCGCCAAGAACGGTCGTCGAGTGCGGCGTGCTGCTGGAGAGAGGTATGTGGGTGCGGGCGGCG
GCCTAGGCGCCGAAACTGGGCGGCGGCGGCGAGGGGGCGGCCAGTGTGTGCTGGCTGTCGATGGGAGGGAGAGGGGAATG
GTCAATATGCCACCGACTAGCAGGCCAGGGGAAGGACAAGAGCGAGCGTCGCGAATCGCACGTGTCCGCTCCATGTCCGC
CCGCGTTGACGCAAACCAGACCCAAATTTGGACCTGAAATGGGGTTGCGCACGGACAAAAAAGGGACAAGCGTCTATTTA
CGTGGC-GCGTTGAACCGTAATTTGTATCCGTTTCGATTCAAATGAACGCGCAAGCAGTTTAGGTTGGGGCGTTGAAGTT
ACTCTACATACTAATACTAAGATATAAAGGCCCACGGAGCAAGTAAACTGCAGCTTCATGATTTTTAATTACAGCTCCGC
CCGCTCCGGGAGCGGAGTCGTGGAGCGGCGCGATTCCGAACAGGTCCAAAGTCACGGTGACCGGATACAAGCGACGCAGC
GCTGTGCGACACGACTTTGTCACCGAGCAATCAAAGTCTCTTTTTCTACGGATGAGCAAAATCAACG-TTTGATCGAAGC
CTTATTTACAGTAAGGTGAGAGCTGGTGCTACCATACGACACATGTGATAAGCAATACACACTACTTAAAAAGGTGAGAG
CTGGTGCTACTAGACACTTCGCAGGATCCACGTCTCGGTAAAAGGAAAATAATAAAAAGAAA------------------
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----AAACGCAGGATCCAGCCAAGGAAACACGTGCCCGCCGCGCTGGCGTGCACGTGTGGAGAGCGCGTACCCGCGTAGC
GTAG-----CCTTGCCCCAACGGTCGGTTCGGCCGATGCAGTCGGTTCGAATTTCGAAATAAATATCCCCTTCCTTCCTT
CC----TCCGCC-TCCCCCAAATCCATTCCCCTCCCCTCCCTTTCCCGATC----------------AGTATTTCCA---
------CGCCGCCACCGCCATGGATCCGCCCAAGCGAGCTGTCC------CCCAAGGTAAACAGCGATCCTCTCCTTGAT
TTCCCCCAATCTTTGTCTGCTGCTTCCTTAATTGATCCGTCCGTTCTTACTCCTATTTGTTCACGCGGCCAGGTTCCCCG
CGACGAAGCCCCAGGGCCATGGAGGGCGACGAGAACGCGGCCCCGAGGCACTCCGCCGCGGCGGGGCCCGCGTCCCCGCA
GAGGAAGAAGGTTCTGGGGGAGCGGAACGGCGCCGGCCGCGGGCAGGAGGGCGCCGCGTCGGCCGCCAAGGCCGCCGCGC
TCACCCCGCCACCTCCCACCGGGGGGACGGGGACGGGGACGTACGACCCGAAGACGAACTACACCACGCCGCGGCCGGAC
TTCCTGCGCTACGACCCCAAGCGGAGCCGCGAGATCATCCTCCGCCTGGGGCGCGAGGTGGAGGGCGGCGACAGCTCCAG
CGCCACCTCGGGCACCGAGCACTCGGAGGTGCTGTCTTCCGGCTCGTCGGCGGCGACAGGGGGCGACTCCGAGTGCGACG
ACGCCGACGAGGAGGAGG---TGGCGCCCGCGCAAGGGCAGGGAGGCCGCTGGGCGCGGCGACTGCTGCTGCTTCTCGTG
TCCTCGGCCTGCCTCTTCTGCTACATCTACTGTATGAGTTCCGC--------TCCCTTCCCTGCTACCACTTCAGAAGGA
CCCATCAGTTTCGTCGGATTGAATGGGAGCATGTGTGATGTCGGTGTTCACGAGGCAGTTCCTCTGCTGGGGCCGATTCA
GTATGAACCTGAGGCAGGTATAGGCCAATTTGTGGAGGGGGGCAGTGACGATGGTATCCCTTTGCACGGCCCAGGAGCTT
CTCCTAGCAACTTCATGGCAGTTGCAATGATGGGAATGGCAGATGCCTGCCCTAATGTTGCCTTCGGAGAATTTACATGC
CAAATTGGGGATGAGAGCAGCGAGATTTTGGATGTTCTGAAGGAAGATTCTGAAATAGGCGAGCTGAAATCGGAAGCGAG
CATGAGGCCACTCGAGAATGCTGAAGAAAATAGTGAAGTTGTATGCTCGGGTGGAGATGTCACTGGAGTTCCCTTTGGAT
CCACCCACAGCGATGATTTGGATGAGGACGAGCTAGGATTAGTTCCTCAAGAGACAGGGGAAGATGATTCAGAACACTCC
ATGCCACCATCGGTCACCATGGATGAAATTCTGGAATCAGAAAGCGTGAAGGTGGTGAGTGATGATAAGGGTTTGGAAAG
TGAGAGGTTAGATCAAGAAGAATTCGACTCGCTGGGGTACGAAAACACAGCAAAAGCTGCCAAGAAACTTGTTGATATGG
TGAAAATCCTGTGGTCTGCAGTGGAACCACATTTGCTGAAGATGCTGGCATGCTTATCTGTTGCAGGCCTTGTGACTGTT
ATGTTCAAGTATTCCCAAAGGTCTCGCAAGGTCAAGGTGCCCGTGTCACAACGTATGCCTTCAGTTCCACCCAGGCGAGT
GCCAGTATTAGCTCCACATAATGCTGTGCCACTGCCGGTGTTCCATTCAGAGCAACCTGTGCAACGGATTGTGCCCAAAC
AAGAGTCATCTGCCTGCTTGGAGCTTCCTGTGCAAACGTTGTTGTCAGAGTCAGATCAATCTGTGTGCCTCGATGTTCCA
TCAATTGGTCG-----------------------------------------------------------------TAGG
GATCATGATCAGAAAGTTCAGCAAGAGGATGGTA---GCG---TTGAAAGGCCTTCAGATGGCAGTACTGTGGATCATAA
AGATACTGACAGATCAAAGCCACCGGTGGTTCAGTTGCTCGGAGAGTTCTCATTTGTCGATGCAGATAGCTCAAGACGGA
GGTCTGTCAAAGACTCAATTCAGCATGCTGGACACGTCACGGTTCAGGAATCCATGTCTTTGAGGAAGCGTGTGGTCAAG
ACGCAAAAGGATTCTGACAAAATGCGAACCCCTGGTCTTGAAGC--AGCAACAAAGAAGGTAAATTCTAGTTTCTTTTCC
AGACATCTTTTGGCATTGTATTTTTGTGTGCGAAGTGTGAGTGCGTCGTATGAGATTATCCTGTCTTTTGAGGAC-----
----------------------------------------ATCTGTTGGCAAATGCATTTTAGTTCCTTCGAAGTTGAGT
TTTAGAATTATCTGAACTTACACCAAACAGGTATTTTGGCCTGATAG-GTGTGTTATTTACTGCAAATTAGACAGCTACA
CAGAAGTAGTTACTAGCTTAGTA-----------------------------------CATTCACATTAGTGGCCACTAT
TATGATATATGTGAAATCATCATTGCTAGTCTTACTTATAA-TCTGATACAGAACACCTTACATTGCACATTTGAAAATA
AATTAAATTAAAGACATCTACG-CAC-------AGTGCTTCAGATTTATCTTATCATTACCATTATCCCCCAGACATTAA
GTTTGGTTTCAAGCTTTTATTCCCC--CACA------------------ATGCTTCAAGCTTGCTATTAACTCG-ATGTG
TTGTTATTCCGTTCAACAGGAGACTGCAAGAGCAGAAGAAGAGAAGGTGGGTGCTACACCGACTCCACCGAGGCGTTCAA
ATCGTCTCCGTAAACTGGCTTCTCCTTGAGCCAAGGCAAACACGGTGCATTTTGT--TGATGTCAG--GCTGATTCTTCG
TGTGGTGCTGGGAGCTGTGGGAGACATCGCCTAGTTGTAACCCAACGATGCTAAGATTT-GGTGCTGTAGCTGTAACAAG
TTAGCTAGTGTA---GAAGGCTTGCAGTGTGTTTGGTTCCACAGAAAACCTGTAAAATCTGCATTTGACATTATTGTACT
GTACTCGTTTACCTGCCCCTAAAGGTGAAGCAGAGATGCTGGG--TGTATTGAGCAGGTTTAGTCTTGCCCACTTTGTCC
AATTGAGCCAAGTTTCTCCTGATTAGTCTTTGAATTATGTTAGTGTTGTGATTTCCCTTATGCTCTGAACATTGCGCAAT
GGCCGTTGTGCTGTTCTGTACCTGTTAGCCACTCCATCCGTTCGTTTTTTATAAGGAGCTGGGCGTGCTCCCTATTTTTT
TTGGAGGCTGCCGGACCTGTGCCTAAACATTATAATCGTCAAACGGTAGTCTCTATAACTTCTTTTATGTTGCTTTCTCT
TTAATTTGTGTAAAAAATATTGAGTTAAAACTTGTAGGGGCAATTTAAGTGACATTTAACCTATACCTATACCTGTATAC
TAATAACAAAGTAAGGTGCGTTTCTTCGGGTTTTTTATCCGTTCACCCATATTATAATTTTTACTATTCGAGGTGGTACT
AATTTTTGTTGTTGTTTTGTCGGGCACATAACCAGCCTGTACCAGGCCACACAGCCCCACAGGCTTTCTAGAAAGTGAAA
AAAAAATAGAAGTACAACGCACGGGCATGCGAATCTTTTCTCCCGTTGCAACGCACGAAAATGTTTGCTAGTCTGACTAA
ACACACGTACTCCTATGTATTAACACCATAACTTCAATTAACAACTATATTAATGGCCAAAATTCATGGCACCATACACA
TTTTGTGATTTGAAATGTTGCCATTCGACATTGCTACCTACTACTACCGTAAATCCCACACCGACACCGTCTAATTGAT
>chr3A_1
AAAACAGTCCACAAACGCCGGCAAGAATGGCCGTCGAGTGTGGTGTGCTGCTGGAGAGAGCTATGTGGGTGCGGGCGGTG
GCCTGGGTGCCGAAACTGGGCGGCAGCGGCCAGGGTGTG------------TGGCTATCAATGGAAGGGAATGGC-----
--CAATATGCCACCGACTAGCAGGCCAGGGGAAGGACAAG-------GCCGAGCGTCGCGCGAGTCCGCTCGGTGTCTGA
GCC----GACACGAACACGGCTCAAAATTGAACTTGCAGTGGATCA-CGCGCAAACAAAAAACGAATGCGTTTCTGTTTA
TGTTGGTGCGTTGGACTGTGATTTGTGTCCGTTTCGGTTTAAATGGATGCACCGAGCAGTGTGGTTGGCGCGTTTAAGTT
GCTCTAAGTACTACTAAAATA-----------------------------------------------------------
----------------------------------------------CAAAGTCATGGTGATAGGATACAAGCGACGTAGA
GCTGTGCGACACGACTTTGTCACCGAGCAATCAAACTCT-TTTTTCTATAGATGAGCAAAATAAAAAATTTGATCGAAG-
CTTATTTACAGTG----------------------------------------------------------AGGTGAGAG
CTGGTGCTACTAGACACTTGGCAGGATCCACGTCTCGGTAAAAAAAATTAGGGGCGGTTTCAGTTACCGGAAAAGTTGGA
TCGGATCGCACGAGGCGATCAGGAGGCGACGAGGCCCTTGCGCGCCGCCGCTGACACCTCCGGTTCCCTCTCTCTCCATC
GGCCGCTCCAGCGGCGGGAGGGAGGAGGAATCTCGGGTCTGTTCGCTAGGTGGGTGTGTGGTAGGGTTAGGGTTGAGGGA
GACGTTACCGAGGCCGTCGCGGTGGTGTTGCGTCGGAATAAGTTTCTCCGGGCTCCGTTCGCGGTCAGGCGAGGCTTTTG
CCTTCGTCTAGGAGCCAGCGGAGTTGAGGATCCCCGGATCTCGTTGAGGTCGCGGGCTTTGGTGGCTGGAGTCCATCGGC
ACTGGCCGTTTGGGTCCTCAGATGGGCGATGGATTCAGGGAGACGAAGACCCTTCTTCTTCCTTGTTGTTATGATTTGCT
GCTGCTGTTCTTCTTCTTTCTATTTGCTGATGCTGGTGGGAGATCCTGCTTTGCCCGGGCGGATGGCCCGACCACGGTGT
TGGACCGGTCGGATGACTCGAGTTCTCTTTCTTCCGGAAGGGACACTTCTCGCGGTACTCAAAGCCAAAGATGGCGACGG
CTGTTGCAGGTGTGTTGGATTGATGTCCATGCCCTCTCAGTATTGATGTCAAGAAAGGAGGAAATAGCGTGGCGGCAATT
GTACCGTGGTCGAAGATGATGACCTGTTTGCGACTGGTTGCATATCCTTCTGCTGCAGGGGTCTTCTCTCAAGATTCAGG
GATGATGACACAGGGCTCCGAAGATCTTCTTGTGTTATGGTTGTTTTAGGGTATTCTAGGTGTTTATCTTTTTTTGTTTT
TGCATTTCAGTATGCTTGTAAGGGTCACCTACTCTGTACTGATTCGTGATTTGAATAAACAATTTTTTTAAAAAAATGT-
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------ACGCAGGATCCAGCCAAGGAAACACGTGCCCGCCGCGCTGGCGTGCACGTGTGAAGAGCGCGTACCCGCGTAGC
GTAGAGTTGCCTTGCCCCAACGGTCGGTTCGGCAGATGCAGTCGGTTCGAATTTCGAAATAAATATCCCCTTCCTTCTTT
CC----TCCGCCTTCCCCCAAATCCATTCCCCTCCC-----TTTCCCGATC----------------AGTCGCCCCCGCC
GCCA-CCGCCGCCGCCGACATGGATTTGCCCAAGCGAGCTCTCC------CCCAAGGTAAATAGCGATCCTCTCCTTGAT
TTCCCCCAATCTTTGTCTGCTGCTTCCTTAACAGATCCGTCCGTTCTTG------TTTGTTCACGCGGCCAGGTTCCCCG
CGACGAAGCCCCAGGGCCATGGAGGGCGACGAGAACGCGGCCCCGAGGCGCCCCGCCGCGGCGGGGCCCGCGTCCCCGCA
GAGGAAGAAGGTTCTGGGGGTGCGGAACGGCGCCGGCCGCGGGCAGGAGGGCGCCGCGTCGGCCGCCAAGGCCGCCGCGC
TCGCCACGCCGCCTCCCACCGGAGG---GGGGGCGGGGACGTACGACCCCAAGACGAACTACACCACGCCGCGGCCCGAC
TTCCTGCGCTACGACCCCAAGCGGAGCCGCGAGATCATCCTCCGCCTGGGGCGCGAGGTGGAGGGCGGCGACAGCTCCAG
CGCCACCTCGGGCACCGAGCTCTCCGAGGTGCTGTCTTCCGGCTCGTCGGCGGCGAGAGGGGGCGACTCCGAGTGCGACG
ACGCCGACGACGAGGAGGAGGTGGTGCCTGCGCAAGGACGGGGAGGCCGCTGGGCGCGGCGACTGCTGCTGCTGCTCGTG
TCCTCGGCCTGCCTCTTGTGCTACATCTACTGTATGAGTTCCGC--------TCCCTTCCCTGCTACTACTTCAGAAGAA
CCCGTCAGTTTCGTCGGATTTAATGGGAGCATGTCTGATGTCGGTGTTCACGAGGTAGTTCCTCTGCCGGGGCCAATTCA
GTATGAACATGAGGCAGATATAGGCCAATCTGTGGTCGGGGGCAGTGACGATGGCATCCCTTTGCACGGCCCAGGAGCTT
CACCTAGCAATTTCATGGCAGTTGCAATGGTGGGAATGGCAGATGCCTGCCCTAATGTTGCCTTCGGAGAATTTACATGC
CAAATCGGGGATGAGAGCAGCGAGATTTTGGATGTTCTGAATGAAGATTCTGGGATAGGCGAGCTGAAATCGGAAGCGAG
CATGAGGCCACTCGAGAATGCTGAAGAAAGCAGTGAAGTTGTATGCTCAGGTGGAGATGTCACTGAAGTTCCCTTTGGTT
CCACCCACAGCGATGATATGGATGAGAACAAGCTAGGATTAGTTCCTCAAGAGACAGGGGGAGATGAATCAAAACAATCC
ATGCCACAGTTGGTCACCATGGATGAAATTCTGGAATCAGAAAGCGTGAAGGTGGTGAGTGATGATAAGGGTTTGGAAAC
TGAGAGGTTGGATCAAGAAGAATTCGACTCGTTGGGGTATGAGAACACAGCTGAAGGTGCCAAGAAACTTGTTGATATGG
TGAAAATCCTGTGGTCTGCAGTGGAACCACATTTGCTGAAGATGCTGGCATGCTTATCTGTTGCAGGCCTTGTGACTGTT
ATGATCAAGTATTCCCAAAGGTCTCGCAAGGTCAAGGTGCCCGTGTCACAACGTATGCCTTCAGTTCCACCCAGGCGAGT
GCCAGTACTAGCTCCACATAATACTGTGCCACTGCCGGCGTTCCATTCAGAGCAACCTGTGCAACGGATTGTGCCCAAAC
AAGAGTCATCTGCCTGCTTGGAGCCTCCTATGCAATCCTTGTTGTCAGAGTCAGACCAATCTGTGTGCCTCAATGTTCCA
TCAAGTGGTC-----------------------------------------------------------------ATAGG
GATCATGATCAGAAAGTTCAGCAAGAGGATGGTGGTGGCG---TTGAAAGGGCTTCAGATGGCAGTACTGTGGATCAGAA
AGATACTGACAGATCAAAGCCACCAGTGGTTCAGTTGCTCGGAGAGTTCTCATTTGTCGATGCAGATAGCTCAAGACGGA
GGTCTGCCAAAGACTCAATTCAGCATGGTGGAGACGTCACGGTTCAGGAATCCATGTCTTCGAGGAAGCGTGTAGTCAAG
ACGCAAAAGGATTCTGACAAAATGCAAACCCCTGGTCTTCAAGC--AGCAAGAAAGAAGGTAAATTCTTGTTTCTTTTCC
AGACATCTTTTGGCGTTGTATTTTTGTGTGCGAAGTGTGAGTGCGTCATATGAGATTATCCTGCCTTTTGAGGAC-----
----------------------------------------ATCTGTTGGCAT-TGCATTTTAGTTCCTTAGGAAGTGAGT
TCTAGAATTATCTGAACTTACACCAAACAGGTATTTTGGCC-------------------CTGCAAATTAGACAGGTACA
CAAAAGTAGTTACTACCTTAGAA-----------------------------------CATTCACATTAGTGGCCACTAT
TATGATATATGTGAAATCATCATTGCTAGTCTTACTTAATAGTCTGATCCAGAACACCTTACATTGCACATTTGAAAATA
AATTAAGTTAAATACATCTACG-CAC-------AGTGCTTCAGATTTATCTTATCATTACCATTATGCCCCAGGCATTAA
GTTTGCTTTCAAGCTTTTATT-CCC--CACA------------------GTGCTTCAAGCTTGCTATTAACTCG-ATGTG
TT---ATTCTGTTTAACAGGAGACTGCAAGAGCAGAAGAAGAGAAGGTGGATGCTACACCGACTCCGCTGAGGCGTTCAA
ACCGTCTCCGTAAACTGGCTTCTCCTTGAGCCAAGGCAAACACGGTGCATTTTGC--TGATGTCGGCTGCTGATTCTTCG
TGTGGTGCTGGGAGCTGTAGGAGACATCACCTAGTTGTAACCCAACGATGCTAAGATTT-GGTGCTGTAGCTGTAATAGG
TTAACTAGTGTA---AAAGGCTTGCAGTGTGTTTGGTTTCCCAGAAAACCTGTATAATCTGCATTTGACATTATTGTACT
GTACTCG-TTACCTGTCCCTAACGGTGAAACAGAG---------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_526
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----------------------------------------------CAAAGTCACGGTGACCGGATACAAGCGACGTAGC
GCTGTGCGACACGACTTTGTCACGGAGCAACCAAA-------TTTTTCTTAATGAGCAAAATCAAAG-TTTGATCGAAG-
CTTATTTACAGTG----------------------------------------------------------AGGTGAGAG
CTGGTGCTACTAGACACTTCGCAGGATTCACGTCTCGTTAAAGAAAAGTACTACTCCCTTATTCCATTTATATAGGCCTA
ACCGTTTTTTAATACCATCTTTAACTATTGAGAAGATTAATAATACATGAGATATATAATATGAAAATTATATTATTGAA
AGCTCTTTTCATGTATGAATTTGACGGTATGCTTCGTATAAGTTGCATGTCATATATTATTTTTCTAACATTTAATCAAA
ATTAGTTTAAAAAACGCATTAGACCTATATATAGATGGAAGGACGGAGTACACAGTATCCACGTCTCCGTAAAAAAAAAT
AGGGACAATTGCATTTTTACCCCTAGTTGGTTCCTACCCACGGGTTTTG-------------------------------
-------------------------------------------------CCCTTACTTTTCGAGCTTGCTCAGTTTTGCC
CTTACTTTTTCCATCGAGGTCCCTCAAATGCCCTTTGACTGTTTGACCAAAACTTTAAAAATTCATAACTAAATCATACA
AACTCAGAAAAATGCAAATAAGATATTAAAATGTTCAGATAAACATTACCTTTATGGGCATATCATTTACAGTCAGGACA
AAAGCATTGTTTAAACTACCCAAGGTAATTAATATTATTAACATTATTAAAAATAAATAGGT------------------
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------------------------------------------------------ATAAACAATATATTTTTCATGAATAA
AAATTACATGCAAATGTAGGTGATGTTTTCTAAACATCCTAATAACTTATTTGCATTTTTATGAGTTTGTATCAACTTGT
TATGAATGTTCTAACAACTTTGACCATTATTTGGAAAGATCATAACAAGTTGATACGAACTCATGAAAATGCAAATAAGG
TATCAGGATGTTCAAAAGACATCACCTACATTTGCGTATAATTTTTATTCATGAAAAAAATATTGTTTATACCTATTTAT
GTTTAATAATGTTAATAACATTAATTACCTTAGGTAGTTTAAACAATGCTTTTATCCTGAATGCAAATGATATGCCCATA
AAGGTAATGTTTATCTGAACATTTTGATATCTTATTTGCATTTTTTCGAGTTCATACGAATTAGTTATGAATTTTCAAAG
TTTTGGTCAAACGGTCAAAGAGCATTCGAGGGACCTCAATGGAAAAAGTAAGCGCAAAACTGAGCAAGCTCGAAAAGTAA
GGGCAAAACCCATAAGTAGGAACCAACTAAGGGTAAAAATGCAATTGTCCCAAAAAATACTACACAGGATCCACGTCTCA
GAGGAAACGCAGGGTCCAGCCAAGGAAACACGTGCCCGCCGCGCTGGCGTGCACGTGTGAAGAGCGCGTACCCGCGTAGC
GTAG-----CCTTGCCCCAACGGTCGGTTCGGTCGATGTAGCCGGTTCGAATTTCGAAATAAATATCCCCTTCCTTCCTT
CCTTCCTCCGCC-TCCCCCAAATCCATTCCCCTCCCCTCCCTTTCCCGATC----------------AGTCCACGCCGCC
GCCGCCCGCCGCCGCCGCCATGGATTCCCTCAAGCGAGCTCTCCCCCAAGCCCAAGGTAAATACGGATCCTCTCCTTGAT
TTCCCTCCAAC-TTGTTTGCTGCTTCCTTAATTGATCCGTATTTATTTG------TTTACTTATGCGGCCAGGTTCCCCG
CGACGAAACCCCAGAGCCATGGAGGGCGACGAGAACGCGACCCCGAGGCGCCCCGTGGCGGCGGGGTCCGCGTCCCCGCA
GAGGAAGAAGGTTCTGGGGGAGCGGAACGGCGCCGGACGCGG---GGAGGGCGCCGCGTCGCCCGCCAAGGCCGC---GC
TCACCCCGCCGCCTTCCACCGGAGG---GGGGGCGGGGACGTACGACCCGAAGACCAACTACACCACGCCGCGGCCGGAC
TTCCTGCGCTACGACCCCAAGCGGAGCCGCGAGATCATCCTCCGCCTGGGGCGCGAGGTGGAG---GGCGACAGCTCCAG
CGCCACCTCGGGCACCGAGCTCTCGGAGGTGCTGTCTTCCGGCTCGTCGGCGGCGAGAGGGAGCGACTCCGAGTGCGACG
ACGCCGATGAGGAGGAGG---TGGTGCCTGCGCAAGGACGGGGAGGCCGCTGGGCGCGGCGACTGCTGCTGCTTCTCCTG
TCCTCGGCCTGCCTCTTCTGCTACATCTACTGTATGAGTTCCGC--------TCCCTTCCCTGCTACTAATTCAGAAGAA
CCCATCAGTTTCGTCGGATTGAATGGGAGCATGTATGATGTCGGTGTTCACGAGGTAGTTCCTCTGCTGGGGCCAATTCA
ATATGAACATGAGGCGGATATAGATCAAACTGTGGTCGGAGACAGTGAAGATGGTATCCTTTTGCACGGCCCAGGAGCTT
CACCTAGCAATTTCATGGCAGTTGCAATGATGGGAATGGCAGATGACTGCCCTAATGTTGCCTTCGGAGAATTTACATGC
CAAATCGGGGATGAGAGCAGCGAGATTTTGGATGTTCTGAACGAAGATTCTGGGATAGGCGAGCTGAAATCAGAAGCGAG
CATGAGGCCACTCGAGAATGCTGAAGAAAATAGTGAAGTTGTATGCTCGGGTGGAGATGTCACTGCAGCTCCCTTTGGTT
CCACCCACAGCGATGATTTGGATGAGGACAGGCTAGGATTAGTTCCTCAAGAGACAGGGGAAGATGATTCAGAACACTCC
ATGCCACAGTCGGTCACCATGGATGAAATTCTGGAATCAGAAAGTTTGAAGGTGGTGAGTGATGATAAGGGTTTGGAAAG
TGAGAAGTTAGAT---CAAGAATTCAACTCGTTGGAGTATGAGAACACAGCAAAAGCTGCCAAGAAACTTGTTGATATGG
TGAAAATACTGTGGGCTGCAGTGGAACCCCATTTGCTGAAGATGCTGGCATGCTTGTCTGTTGCAGGCCTTGTGACTGTT
ATGTTCAAATATTCCCAAAGGTCTCGTAAGGTCAAGGTGCCCGTGTCACAACGTATGCCTTCAGTTCCAACCAGGCGAGT
GCCAGTATTAGCTCCACATAATACTGTGCCGCTGCCGGTGTTCCATTCAGAGCAACCTGTGCAACGGATTGTGCCCAAAC
AAGAGTCGTCTGCCTGCTTGGAGCTTCCCCTGCAATCCTTGTTGTCAGAGTCAGACCAATCTGTGTGCCTCAATGTTCCA
TCAATTGGTC-----------------------------------------------------------------ATAGG
GATCATGATCAGAAAGTTCAGCAAGAGGAT---GGTGGTGGCATTGAAAGGGCTTCAGATGGCAGTACTATGGATCAGAA
AGATACTGACAGATCAAAGCCACCGGTGGTTCAGTTGCTCGGAGAGTTCTCGTTTGTAGATGCGGATAGCTCAAGACGGA
GGCCTGTCAAAGACTCAATTCAGCATGGCGGAGACGTCACGGTTCAGGAATCCGTGTCTTCGAGGAAGCGTGTAGTCAAG
ACGCAAAAGGATTCTGACAAAATGCAAACCCCTGGTCTTCAAAC--AGCAAGAAAGAAGGTAAATTCTGGTTTCTTTTCA
GGACAACTTTTGGCATTGCATTTTTGTGTGGGAA--GTGAGTGCATCATATGAGGCTATCCTCTCTAGAATTA-------
-------------------------------------------------CAT-TGCATTTCAGTTCCTTGAAAAGTGAAT
TTTAGAATTATCTGTACTTACACCAAACATGTTTTCTGGCCCTATGG-GTGTGTTATTTTCTGCCAATTACACAGGTACA
CAAAAGTAGTTA---GCTTAATGTGCATTCACGCAGGGGAAGTGTAATGACTGGTGGTCATTCACATTAGTGGCCACTAT
TATGATAT--GTGACATCATCGTTGCTAGTCTTT----ATAGTCTGATC------------CATTACACATTTGAAAATA
AATTAAACACACACACACACACACAC-------AGTGCTTCAGATTTATCTTATCATTACCATTATGCCCCAGACATTAA
GTGTATTTTCATGCTTTTAGT-TCCCACACA------------------GTGCTTCAAGCTTGTTATTAACTCG-ATGTG
TTGTTATTCTGTTCAACAGGAGACTACAAGAGCAGAAGAAGAGAAGGTGGATGCTACACCGACTCC---GAGGCGTTCAA
ACCGTCTCCGTAAACTGGCTTCTCCTTGAGCCAAGACAGACACGGTGCATTTTGC--TGATGTCGGACGCTGATTCGTCA
TGTGGTGCTGGGAGCTGTGGGAGACATCGCCTAGTTGTAACCCAACGATGCTTAGATTTTGATGCTGTAGCTGTAACAGG
TTAACTAGTGTACT--AAGGCTTGCAGTGTGTTTGGTTTCCCAGAAAACCTGTATAATCTGCATTTGACATTATTGTACT
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-------------------------------------------------------------------------------
>chr7D_710
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-----------------------------------------------------------------------AGGTGAGAG
CTGGTGCTACTAGACACTTGGCAGGATCCACGTCTCCGTAAAAAGAAAATAAAAAGAAAAAA------------------
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---------------------------------------CGCGCTGGCGTGCACGTGTGGAGAGCGCGTACCCGCGTAGC
GTAG-----CCTTGCC------------------------------------------------------TTGCTTCCTT
CCTTCCTCCGCC-TCCCCCAAATCCATTCCCCTCCC-----TTTCCCGACGGAGGTGAGAGATGGAGAGTATTTCCA---
------CGCCGCCGCAGCCATGAATTCGACCAAGCGAGCTGTCC------CCCAAGGTAAATAGCGATACTCTCCTTGAT
TTCCCCCAACCTTTGTCTGCTGCTTCCTTAATTGATCCGTCCGTTCTTACTCCTATTTGTTCACGCGGCCAGGTTCCCCG
CGACGAAGCCCCAGGGCCATGGAGGC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CGACG
ACGACGAGGAGGAGTAT---------------------------------------------------------------
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---------------------------------------GAAAGCGTGAAGGTGGTGAGTGATGATAAGGGTTTGGAAAG
T---AAGTTAGAT---GAAGAATTCGACTCGTTGGAGTATGAAAACACAGCAGAAGCTGCCAAGAAACTTGTTGATACGG
TGAAAATCCTGTGGTCTACAGTGGAACCCCATTTGCTGAAGATGCTAGCATGCTTATCTGTTGCAGCCCTTGTGACTGTT
ATGATCAAGTATTCCCAAAGGTCTCGTAAGGTCAAGGTGCCCGTGTCACAACGTATGCCTTCAGTTCCACCCAGGCGAGT
GCCAGTATTAGCTCCACATAATACTGTGCCACTGCCGGTGTTCCATTCAGAGCAACCTGTGCAACGGATTGTGCCCAAAC
AAGAGTCATATGCCTGCTTGGAGCTTCCTGTGCAATCCTTGTTGTCAGAGTCAGATCAATCTGTGTGCCTCAATGTTCCA
TCAATTGGTCATAGGGATCGTGATCAGAAAGGTCAGCAAGAGGATGTTTGTGCCTCAATGTTCCATCAATTGGTCATAGG
GATCGTGATCAGAAAGTTCAGCAAGAGGAT---GGTGGCG---TTGAAAGGGCTTCAGATGGCAGTACTGTGGATCATAA
AGATACTGACAGATCAAAGCCACCGGTGGTTCAGTTGCTCGGAGACTTCTCATTTGTCGATGCAGATAGCTCAAGACGGA
GGTCTGTCAAAGACTCAATTCAGCATGGTGGAGACGTCACGGTTCAGGAATCCATGTCTTCGAGGAAGCGTGTGGTCAAG
ACGCAAAAGGATTCTGACAAAATGCAAACCCCTGGTCTTCAAGCAGAGCAAGAAAGAAGGTAAATTCTAGTTTCTTTTCA
AGACATCTTTTGGCATTGCATTTTCATGTGCCAAGTGTGAGTGCATCATATGAGATTGTCCTGTGTAGAATCACGCCCCT
GTGGTTGTGTTATCATGTTAGATATCCTGTCTTTTGAGAAATCTGTTGGCAT-TGCATTTAAGTTCCTTAGAAAGTAAGT
TCCTTAGAAAATAG---------------TTTTTTCTGGCCCTAGGGTGTGTGTTATTTTCTGCAAATTAGACAGGTACG
CAGAAGTAGTTA---GCTTAGTG-----------------------------------CATTCAGATTAGTGGCCACTAT
TATGATAT--GTGACATCATCATTGCTCTT----CTTATAC-TCTGATCCACAAGACCTTACATTACACATTTGAAATTA
A------TTAATTACATCTACA-CACAGTGCTTAGTGCTTCAGATTTATCTTATGATTATACCCTAGACATT-------A
GTCTGTTTTCATGCTTTTATT-TCCCACTGCAGGATTATACGCCTGGTGGTGCTTCAAGCTTGTTATTAACTCTTATGTG
TTGTTATTCTGTTCAACAGGAGACTGCAAGAGCAGAAGAAGAGAAGGTGGGTGCTACACCGACTCCACCGAGGCGTTCAA
ATCGTCTCCGTAAACTGGCTTCTCCTTGAGCCAAGACAGACACGGTGCATTTTAAGTTGATGTCGGACGCTGATTCGTCA
TGTGGTGCTGGGAGCTGTGGGAGACATCGCCTAGTTGTAACCCAACGATGCTAAGAT-TTGGTGCTGTAGCTGTAACAGG
TTAACTAGTGTAGAAGAAGGCTTGCAGTGTGTTTGGTTTCCCAGAAAACCTGTATAATCTGCATTTGACATTATTGTACT
GTACTCT-TTACCTGCCCCTGAAGGTGAAGCAGAGATTGCTGGTTTGTATTGAGCACGTTTAGTCTTGCCCCCTTTGTCC
AAGAGAGCCATGTTTCTCCTGATTAGTCTTTGAATTATACTAATGGTGTGATTTCCCTTATGCTCTGAACAT-GCGCAAT
GGCCGCTGTGCTCTTCTGTACCTGTTAGCCACTCCATCCGTTCGTTTTTTATAAGGAGCTGGGCGTGCTCCCTATTTTTT
TTGGAGGCTGCCGGACCTGTGCCTAAACATTATAATCGTCA------------TATAACTTCTTTTATGTTGTTTTCTCT
TTAGTTTGTGTAAAAAAAATTGAGTTAAAACTTGTAGGGGCAATTTAAGTGACATTTAACCTATACCTATACCTATATAC
TAATAACAAAGTAAGATGCGTTTCTTCAGTTTTTTTATCCGTTCACCCATATTATAATTTTTACTATCTGAGGTGGTACT
AAATTTTTTTGTTGTTTTGTTGGGCACATAACCAGCCTGTACCAGGCCACACAGCCCCACAGGCTTTCTAGAAAGTGAAA
AAAAAATAAGAGTACAACGCACCGGCATGCGAATCTTTTCTCCCGTTGCAACGCACGGAAATGTTTGCTAGTCTGACCAA
ACACACGTACTCCTATGTATTAACACCATAACTTCAATTAACAACTATATTAATGACCAAAATTCGTGGCACCATACACA
TTTTGTGATTTGAAATGTTGCCATTCGACATTGCTACCTACTACTACCGTAAATCCCA---------------------
>chr5A_1320
GGAGGGCGACA---------------------------------------------------------------------
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-----------------------------------GGGATGTACGACCCGAAGAAGAACTACACCACGCCGCGGCCA---
-------GCTACGACCCCAAGCGGAGCCGCGAGACCATCCACCGCCTGGGGCACGAGATGGAG---GGGGACGGCTCCAG
TGCTACCTTGGGCACCGAGCTCTCAGAGGTGCTGTCTTCCGGCTCGTCGGCGGCGAGAGGGAGA------------GACG
ACGCCCAA---GAGGAGGTGGTGGTGCCAGCGCAAGGACGGGGAGGCCGCTGGGCGCGGTGACTGCTGCTGCTTCTCGTG
TCTTCC----------TCTGCTACATCTACTGTATGAGTTCCGCACTTCCGCTCCCTTCCCTGCTACTGCTTCAGAAGAA
CCCATCAATTTTGTTGGATTGAATGGGAGCATGTGTGATGTCGGTGTTCACGAGCTAGTTCCTCTGTTGGGGCCAATTCA
GTATGAACATGAGGCAGATATAGATCAAACTGTGGTTGGGGACAGTGAAGATGGTATCCTTTTGCATGGCACAAGAGCTT
CTCCTAGCAATTTCATGGCAGTTGCAATGATGGGAATGGCAGATGCCTGCCTCAATGTTCCCTTCGGAGAATTTACATGC
CAAATTGGGGATGAGAGCAGCAAGAATGTGGATGTTCTGAAGCAAGATTCT-----------------------------
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-------------------------------------------------------------------------------
>SNPs
-----S--------------S------S--S---------S--S----------------S-----------------S-
----S--S----------------S-----S----S-S-SSSSSSSSSSSS-----S--S----S-----SS--SSSSSS
SS--------------------------------------SSSSSSS-S--S-SS----S--S--------SS----S-S
S-SSSSS---S-S---SS-S-S----S---S--S--S-S---SSSSS---S-SS--------S-S-SSS-SS---S----
S--S-S-------S--S--S------S---------S--S-----S-S--S-SSSSSSS-SS------S-----S-----
S-----SS-----S--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S---
-----------------------------------S---S--------SS---------------S-------------S
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
-------------------------------------------S--------S--S--S---------------------
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-------------S-----------S-----------------------------------S------------------
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-------------------------------------------------S-S----------------------------
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----------S-----------S--SSS----S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------S-----------------------
------------------------S---S--------S-S----------------------------------------
-------------------------------------------------------------------S----------S-
-------------------------------------------------------S------------------S-----
--------S--------S-----------S-----SS-------------------------------------------
----------S---------------------------------------------------------------------
----------------------------------------------------SS--------------------------
-----------------------------------------------------------------S------------S-
-----------------------------S--------------------------------------------------
-------SS-----------------------------------------------------------------------
-------------------------------S-------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
-----------------------------------S-S---------------------------------S--------
----------S---------------------------------------------------------------------
---------------------------------S-----------------S----------------------------
--------------------------------------------------------------------------------
---------------------------S----S---------------------------S-------------------
-------------------------S-------------S-----------S----------------------------
-----------------------------------------------S--------------------------------
---------------------------------------------------SS----------------S---SS-----
-----------------------------------------SS--S-------------S---------------S----
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------S-----------------------------------------------------S-------------
-----S---------------S---------------------------S------------------------------
---------S----------------------------------------------------------------------
------------------------------------------------------S---------S---------------
------------------------------------------------------------------------------S-
---S----------------------------------S-S-------------S-------------------------
-------S-----------------------------SSSS---------------S--------------S--------
--SS------S---------------------------SS--S--S--------------------------S-------
-----S------S-------------------------------------------------------------------
-----------------------------------------SSSSSSSSSSSS-------------------S-------
---S-------------S--------------------------------------------------------S-----
---------------S-----------S-S-------------------------------------SS-----------
--S----S------------S-----------------------------------------------------------
--------SS------------S----------------------------------S-------------------S--
-------------------------------------------------------S---------S--------------
----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
>forward_159
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-----------------------------------------------------------GATGGGAGGGAGAGGGGAAT-
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-------------------------------------------------------------------------------
>reverse_3199
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------------------------------------------------------------------------------GA
CCCATCAGTTTCGTCGGA--------------------------------------------------------------
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-------------------------------------------------------------------------------
>forward_454
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----------------------------------CGGAGCAAGTAAACTGCAGC--------------------------
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>reverse_3599
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------------------------------------------------------------------------------AT
CCACCCACAGCGATGATT--------------------------------------------------------------
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>forward_2542
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------------------------------------------AGCTGTCCCCCAAGGTAAAC------------------
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>reverse_4274
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---------------------------------AGCGTTGAAAGGCCTTCAGA---------------------------
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>forward_3688
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--------------------------------------------------------------------TCAGAACACTCC
ATGCCACC------------------------------------------------------------------------
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>reverse_5478
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-------------------------------------GCTGGGTGTATTGAGCAGGT-----------------------
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-------------------------------------------------------------------------------
