>input_sequence_31375
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-------------------------------------------------------------ATGAGCAGG------GGAG
---GCTTCTCCGTTGTCTCCGGCGGCGGCGCGTCGCGTTGGTGTTTGGCTGTGCTAGCTAGCTCGCTAGCCAGACCCGAG
ATGCCGCCGGCCGCCGCGTCGTGGTCGTGGGCGTGCTGCGGCCGCCGGAGGAAGAGCGCCGGGG------------ACGG
CGACGGCCCCGGCGCGTCGGGGCGGGAGGGGGACCAGTGGACTCTCTTCATCGACCTGCCCGTGCTGGAGGCCGCCACCG
CCGGCTTCTCCGACGGCAACCTGCTCGGCCGCGGCGGCTTCGGCCCCGTGTACAAGGCAAGCGACCTCCTCGCCGATCGT
CTCCCTGCGCGCGCGTGCGCTTGGACCTTGGATCGATCGCTGATGAAAGAAATCTGCATGCATGCATGTGCAGGGCGTGC
TGGATGGCGGGCAGGAGATCGCGGTGAAGCGGCTGTCGCTGGAGTCGCGGCAGGGGGTGCGGGAGTTCCTCAACGAGGTG
CGGCTGCTGCTCAAGGTGCAGCACCGCAACCTGGTCTCCCTCCTCGGCTGCTGCGCCGCCGCCGGCCACAAGATGCTCGT
CTACCCCTACTTCCCCAACGGCAGCCTCGACCACATCCTCTTCGGTCAGTCACCCCCGATCCCCATTTATCCAGCCTCTG
CTTATACATCTTC-------------------------------AAACTTCAGAATTCGGTTCATTTTTAACTCGAATTG
CGCGCTAAAACATGGGTGGATTTCATACTAGTTCAGATGAAAACTTCAGCTCTCTGTGTCCAATCTGAAAATCAAAATAT
CTGATCGATTTCAGTAGATTCAGTGGTGCCTAAAATTTCAATCGAAACG-GACAACTGAATGTTCGTGTCAACAGCAGTT
TG------------ATTCAGTCTGTTGCAAGTCTTGAATTGATGTCAGCTAGTA------TTAAAGTTGGCCTTTGCGTG
CTCATATAACAGCTGGTTCCAAGTATTATCATTGACCTTGACTGAATCAGAAGCAGAGTCCTGATTTCTTAACCCGGAAG
GTTCAAATGTCACATCCACAGCAGACCAGTTCTTGATTAGGATTTATTCTTG-------TCAGCAAGCAAACCAGGTGCA
CTTGTGTATATACATAAAGATGCAAAATTACAGCAAAGGATTGGTGCGATTTGATTTAAAACGGAATATGCCTCTTGAGT
CCA-----------------------------------------------------------------------------
-------------------------------CTGCACGAAAGGATCTCAAACACTAAGCTATCTGAGTTTATACCAGTGA
AACATG----------------------------AGAAAAACATAGAATTGGCAAAATTATCTTTGCAGTGTTTGTCAGG
TATCTCAAAAGAATGAGCTTGTCTGAGTTCACTCTGTTCTGCAAAATCATTAAAAAA-------AAAAAATTACAGCTGC
ATAACAATCAATTCCTGCAAAGTAGATCAGTATGCAGCACACGGAAGAACTTTTTGGAGTTTGGTATGAGCACAATTTTA
AGATTTAACATAAGCAGTCTGAATTTTTATATAAGCAGCATGTGCCAGTAAAATTACAATTTCCTAACAATCGATTCCTG
CAAACTA---GATCAGTATACAGAGCATAGAAGAGCTGCTCTGTTATCTGAACCTGCACTGAATTTGCTTCCTTTCAGAC
AGGAAGAAGAGGGTGCAGCTAGACTGGCCAAAACGGTACCAAATAATCCTCGGACTAGCGAGGGGCCTCCTCTACCTCCA
TGAAGAATCCCCGGTGAAGATCATCCACAGGGACATCAAGGCGAGCAACGTGCTCCTCGACGAGAAGCTGAACCCCAAGA
TCTCGGACTTCGGCATGGCGAGGCTCTTCCTCGAAGACGCCACGCACGTGAACACGTTCAGGATCTCTGGCACATAGTAA
GCCCCAAACACATGTACCACTTCCATTCAATAGGTTTTT---TATTATTGTGTAAATGAATAACAGGAAATGATGCGATT
TTTGCAGTGGTTATATGGCCCCGGAGTATGCGATGAGCGGGTACTTATCGACCAAAACCGACGTTTTCAGCTTCGGGATG
CTCGTGCTGGAGATCGTGAGCGGGAGGAAGAACATCGACCGGCATCTCGGCGACGAGAAAATCGACCTGTTGAATTACGT
GAGCATCTCTCATTATTCAAAAAAAAA-AGATTGCATAACCTGCATTTTACATTTTCAATATGAAAAGAGTGA----AAG
TGATAACCGAA-------------------------CTGAAGAATTCA--TCTATGGTGAAACTTTCAGACATGGAAGCT
GTCGGAGGAGGGCCGGTCACTGGAGATCGTGGACCCGGGGCTGTCCGGCTGGGACGCCGGCGAGGTGGCCATGTGCGTCC
AGCTCGGGCTGCTGTGCTGCCAGGCCGTCGTGTCGGACCGGCCGGACATGTACAGCGTGCACCTCATGCTCTCCAGCGAC
TCCTTCACGCTGCCCAAGCCCGGGAAGCCGGCGGTCCACGGCCGGGTCGGCCGGTGGAAGAGCGCCACCGGCTCGGCGTC
CAGCTCCGGCTCCGGCGCGAACACGAACACCACGTTCGCCACCGACACGACCAGGGCCTCCACGCTGGGGAACATTGCTG
AAGATGAATCCAGGAACTCCATTTCCATATCCTTCACCACGGAGGGCCGGTAA---------------------------
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-------------------------------------------------------
>chr3B_1_TraesCS3B01G038900
GTTTGCCCTGCCTCAAATGTGGTACCGATCTGTTACCCTAGCCCATAACGTGGTGGTTTTGGATAAATAACTCTCGATTG
GGTAGTGTTGCGGTGCATCGGCACCCTTGTATCTTGCCTTGGATGTGTGTGTTGTGTGGGGTGATGGCGTGTTGTATCTG
GATTTGTTTCCCTGATCGTGGCTTTATATATAAAGCGGGGCGAAAGCCTTTTTCGGTAAAGGGGATACTTTAAAATGTGA
GTGACTTTACAAGATTCTTTCGCTTGATAGTACTTATTCTAACTTTTCAAACTAACTTTTCATTTTTCACGTGTTCCAAG
AAGATGAGAAGCTACACTTGGGCTACAAAGTTACCTGATACAACTCTATTTCTAATATGCAAACAAGTAATTTCATAATT
TCATTGAACCGGTATGTCTTGCACACTTCATTTCTTAATGCAACACAACATGTGATATGTGATACCGTATTTCTATTTAT
TATGTTGTTTTCGGGTGCTATAACTTTGTGGTAAGATAATTTAAAATTGGACTTTACACTTCACATATTCATATTAGTAG
TACCAATTCTCACAACCAATGACCAAATTTTCTGGCTCCGCACCTGGCTCCCCCGATGGAGGAGAGGAC-----------
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------------------------------------------------------------------------------GC
CCGCCCGCACTACACGACGGCTAACCGCCGCTTGACCCGTACGAG---AGTCAAGCACGCGCTTCGCTTGCACATGTCGC
GCCCACGCTCGAGTGCGCGACAGCGGCCGCACGGCCGGAGACCCGTCGTCGTGGTTGACGTCGAATTCCAAGTCCCACGG
TCCCATTACCCACCGCGCAAACAGCAGCTGGGGCACACTTGTCACCCGCTGCTGCTCCACTGCC--------CTGCGCCG
GTCAGCTAGCAGCCACAGAGAGTGGTATGGTATGTGAGCACGTCACGTTTCCTAATCCTCGCTACTAGTACGCGCGTGGC
CCGGTCCGGCCGGCGGGCTCGACGTCGCGCCGCCAGAGCCTTTCTCTGACT-GTTTGGCGCATGAGCAGG------GGAG
---GCTTCTCCGTTGTCTCCGGCGGCGGCGCGTCGCGTTGGTGTTTGGCTGTGCTAGCTAGCTCGCTAGCCAGACCCGAG
ATGCCGCCGGCCGCCGCGTCGTGGTCGTGGGCGTGCTGCGGCCGCCGGAGGAAGAGCGCCGGGG------------ACGG
CGACGGCCCCGGCGCGTCGGGGCGGGAGGGGGACCAGTGGACTCTCTTCATCGACCTGCCCGTGCTGGAGGCCGCCACCG
CCGGCTTCTCCGACGGCAACCTGCTCGGCCGCGGCGGCTTCGGCCCCGTGTACAAGGCAAGCGACCTCCTCGCCGATCGT
CTCCCTGCGCGCGCGTGCGCTTGGACCTTGGATCGATCGCTGATGAAAGAAATCTGCATGCATGCATGTGCAGGGCGTGC
TGGATGGCGGGCAGGAGATCGCGGTGAAGCGGCTGTCGCTGGAGTCGCGGCAGGGGGTGCGGGAGTTCCTCAACGAGGTG
CGGCTGCTGCTCAAGGTGCAGCACCGCAACCTGGTCTCCCTCCTCGGCTGCTGCGCCGCCGCCGGCCACAAGATGCTCGT
CTACCCCTACTTCCCCAACGGCAGCCTCGACCACATCCTCTTCGGTCAGTCACCCCCGATCCCCATTTATCCAGCCTCTG
CTTATACATCTTC-------------------------------AAACTTCAGAATTCGGTTCATTTTTAACTCGAATTG
CGCGCTAAAACATGGGTGGATTTCATACTAGTTCAGATGAAAACTTCAGCTCTCTGTGTCCAATCTGAAAATCAAAATAT
CTGATCGATTTCAGTAGATTCAGTGGTGCCTAAAATTTCAATCGAAACG-GACAACTGAATGTTCGTGTCAACAGCAGTT
TG------------ATTCAGTCTGTTGCAAGTCTTGAATTGATGTCAGCTAGTA------TTAAAGTTGGCCTTTGCGTG
CTCATATAACAGCTGGTTCCAAGTATTATCATTGACCTTGACTGAATCAGAAGCAGAGTCCTGATTTCTTAACCCGGAAG
GTTCAAATGTCACATCCACAGCAGACCAGTTCTTGATTAGGATTTATTCTTG-------TCAGCAAGCAAACCAGGTGCA
CTTGTGTATATACATAAAGATGCAAAATTACAGCAAAGGATTGGTGCGATTTGATTTAAAACGGAATATGCCTCTTGAGT
CCA-----------------------------------------------------------------------------
-------------------------------CTGCACGAAAGGATCTCAAACACTAAGCTATCTGAGTTTATACCAGTGA
AACATG----------------------------AGAAAAACATAGAATTGGCAAAATTATCTTTGCAGTGTTTGTCAGG
TATCTCAAAAGAATGAGCTTGTCTGAGTTCACTCTGTTCTGCAAAATCATTAAAAAA-------AAAAAATTACAGCTGC
ATAACAATCAATTCCTGCAAAGTAGATCAGTATGCAGCACACGGAAGAACTTTTTGGAGTTTGGTATGAGCACAATTTTA
AGATTTAACATAAGCAGTCTGAATTTTTATATAAGCAGCATGTGCCAGTAAAATTACAATTTCCTAACAATCGATTCCTG
CAAACTA---GATCAGTATACAGAGCATAGAAGAGCTGCTCTGTTATCTGAACCTGCACTGAATTTGCTTCCTTTCAGAC
AGGAAGAAGAGGGTGCAGCTAGACTGGCCAAAACGGTACCAAATAATCCTCGGACTAGCGAGGGGCCTCCTCTACCTCCA
TGAAGAATCCCCGGTGAAGATCATCCACAGGGACATCAAGGCGAGCAACGTGCTCCTCGACGAGAAGCTGAACCCCAAGA
TCTCGGACTTCGGCATGGCGAGGCTCTTCCTCGAAGACGCCACGCACGTGAACACGTTCAGGATCTCTGGCACATAGTAA
GCCCCAAACACATGTACCACTTCCATTCAATAGGTTTTT---TATTATTGTGTAAATGAATAACAGGAAATGATGCGATT
TTTGCAGTGGTTATATGGCCCCGGAGTATGCGATGAGCGGGTACTTATCGACCAAAACCGACGTTTTCAGCTTCGGGATG
CTCGTGCTGGAGATCGTGAGCGGGAGGAAGAACATCGACCGGCATCTCGGCGACGAGAAAATCGACCTGTTGAATTACGT
GAGCATCTCTCATTATTCAAAAAAAAA-AGATTGCATAACCTGCATTTTACATTTTCAATATGAAAAGAGTGA----AAG
TGATAACCGAA-------------------------CTGAAGAATTCA--TCTATGGTGAAACTTTCAGACATGGAAGCT
GTCGGAGGAGGGCCGGTCACTGGAGATCGTGGACCCGGGGCTGTCCGGCTGGGACGCCGGCGAGGTGGCCATGTGCGTCC
AGCTCGGGCTGCTGTGCTGCCAGGCCGTCGTGTCGGACCGGCCGGACATGTACAGCGTGCACCTCATGCTCTCCAGCGAC
TCCTTCACGCTGCCCAAGCCCGGGAAGCCGGCGGTCCACGGCCGGGTCGGCCGGTGGAAGAGCGCCACCGGCTCGGCGTC
CAGCTCCGGCTCCGGCGCGAACACGAACACCACGTTCGCCACCGACACGACCAGGGCCTCCACGCTGGGGAACATTGCTG
AAGATGAATCCAGGAACTCCATTTCCATATCCTTCACCACGGAGGGCCGGTAAAAAATGATACTCTAGTAAGAAATCAGA
CGGTGTAGTGATGGCGCGACCGTGCGAGTGAATGATGCACTCTAGAT-TAGTACAGGAGGCAGTGTTGTTAGTCTGGTAC
TCTGGTTGAATATATGTCGGTA-GAATTTCATGCGTAGAAATAACCACGTGATGAACTGACTTATC-------TTTTTGA
AGAATATCAGACAAATGAGTCCGGATGGTGTTTCCTATCGATTGAACTGCAAAAACGTCATATATTTTGGTACGGAGGGA
GTAGTAAAAATGGACGGTCCGATAGATACTGGAGACACTA----GTGGGCTCCGGTTTTGGAACCTTCCATAAGCATCCA
GTCCAGTTTTCTTTTACCCTTTTTTCTAGCTTTTCCATTTTCTCCTGTTTATAATATGTTTAGAAATTTCAAATTTTGTT
TTCAAACTAGAAAATGCT-GGAAAGTTCATATTTTATTTGGAATATTTTTAGAATTAAAAATTTGTTTGCAACATGGAAA
ACTTTTGAAAGTTTCAACATTTGTTCGGATTTTTTGAAATTTTCTTGGAAATTTCAAATTTTGTTCAGAAATAGGAAATT
TCAAAATGTGTTCAGAATTTACAAAATTTGATTTATAATTTTTAAAAAATAAGATATACAATATATTTGGAATTTTAATA
AGCTGTTAAAAATATTTTTGATGTGCTTTTTAGAAATCTATTCGAAAAAAACACACTACAGTTATTTTTTAGCAAAAAAA
ACACTATAGTACATCTCACTACAGTGCCACGCGTCGCTATTGTTTTTTAATGGGTTGTCCTAGTTAGGGGTGCCCTGTGC
AAAATGCTTCCTATTTTGCG-------------------------CATTAATTAATAAACCTAGTGGATTATGCTCCACA
AGAATTGACACATTATACTTGACGCAGAATGCGTCAAATAAAGGCTCCCGCAGGTCCTGGAATGCCAAAGCACCTGCT--
-CCTATTAGTGGGCCATTTTCCGATGGGCCTTGATTGGGTGGACATTGCTCTGCT
>chr3D_625
GCGTCGCGTTAGTGTTTGATTGTGCTTGCTAGCAAGCGAGAGCCCAGATGCCGCCAGCCGCCGCTTCGTGGTCGTGGGCG
TACTGCGGCTGCTGGAGGAAGAGCGCCAGAGGCGGTGCCAGCACCTACGCGTCTGGGCAGGAGGGGGACCAGTGGACGCT
CTTCATCGACCTGCCCGTGCTGGAGGCCGCCACGGCCGACCTCTCAGACCGACGACCGCAACCTCCTCGACTGCGTGTTT
GAATCATTTCATACATCAACCGCAAGCAAAACCAAAATAAAAAATGAAGAATTTCTTTTTACCTTTGGGACATAGTATCG
AGCACATTGTGGGTGACGGTGATAGTGGTCGTGGCTGTCAATGGCTCTTCCACATCGGCCGCCGCTAGCGACAGGGCAAA
AGGAAGAGGCGGTGCTGGAGACGCAACCGCGGCAGCAACAGTTGTCTTCTTCATCGCCGCCGCCTTCAATTATTTCACCA
GAGCCAAAGCCGACGGGTCGTGTGCGGCCGCTTCGCTGCTCCGCCATGAGGCTTGGCGGCAGCACGGGTCTTCTTGTTGG
GAATATGCCCTAGATACAATAATAAAGTGGTTATTATTATATTTCCTTAATCATGATAAAGGTTTATTATTCATGCTAGA
ATTGTATTGATTGGAAACTTAAATACATGTGTGAATACATAAGCAAATACCAGGTCCCTAGTATGCCTCTACTAGACTAG
CTCGTTGATCAAAAGATGGTTAAGGTTTCCTGACCATAGACATAAGTTGTCATTTGACAACGGGATCACATCATTAGGAG
AATGATGTGATGGACAAGACCCATCCGTTAGCTTAGCATATGATCGTTCAGTTTATTGCTACTGCTTTCTTAAATGTCAA
ATACATATTCCTTCGACCATGAGATCATGCAACTCCCGGATACCGGAGGAATACCTTGTGTGCTATCAAACGTCACAACG
TAACTAGGTGATCATAAAGATGCTCTACAGGTATCTCCGAAGGTGTTTGTTGAGTTGGTGTGAACCGAGATTGGGATTTG
TCATTCCGTATGATGGAGAGGTATCTCTGGGTCCTCTCGGTAATACAGCATCACAAGAAGTTTGCAAGCAAAGTGACTAA
GGAGTTAGTTACAACATGATGTATTATGGAACGAGTAAAGAGACTTACTGATAACGAGATTGAACTAGGTATGAAGATAC
CGACGATCGAATCTCGGGCAAATAACATACCGACGGACAAAGGGAACTACGTATTTGTCATAAAGGTTCAACCAATAAAG
ATCTTCGTAGAATATGTAGAAACCAATATGGGCATCCAGGTCCCGCTATTGGTTATTGACTGGAGAAGCGTCTCGGTCAT
GTCTACATCATTCTCAAACCCGTAGGGTCCGCACGCTTAACGTTCGTTGACGATATAGTATTATATGAGTTATGTATGTT
GGTGACCGAATGTTGTTCGGAGTCTCGGATGAGATCGCGGACATGAGGAGGAGCTCTGGAATGGTCCGGAGGTAAAGATT
GATATATAGGATGATATGGTTGGGCCAAGGGGTAAGGCCCACGGGGTTTTAGGTCGGTGCAAAAGAAAGTTTTGTGGAGG
TCAGGGACCAGACGCCAGAGACCGTGGCGTCTGGTACTGGAAACCGAGAAGGACTCTTCCTTGCGTTCCAACCCGACTTT
GAGGAGGCTCTTTCTCCAAGAAACAACCCCAGGGATCAACATATAAATAAAAGAGCAGGGCTTGCCCCTCGGGGACACCA
CGATTCACCAAGCCATGTGCCGGCGCCCCCTCTCTCTCTAGTTCGTCCTCCGTCCTAAATCCGTTGTGCTTGGCAAAGCC
CTGCGGAAATAGTTTCACCACCACCGTTACCACGCCGTCGTGCTGCCGGAACTCATCTACTACTTCGCCTCTCTTGCTGG
AGTGAGAAGGCGGGGACGTCGTCGAGCTGAACGTGTGCTGAACGCGGAGGTGCTGTACGTTCGGTACTTGATCGGGACGG
ATCATGAAGGTGTACGACTACATCAACCGCGTTGCTAAATACTTCCGTTTAGCGATATACAAGGGTATGTAGATGTTCTC
CCCCTCTCGTAGCTATACATCTCCATGGATAGATCTTGCGTGTGCGTAGAAAAAAATTGTTTTCCATGCAACGTTCCCCA
ACACTTCTCCGGCTTGCCGCCGTACATTCCGGTGACTTTCGCTGGTCGGCGGGCGATGAATCTAGCTCGACGACCATGGG
CGGCGGCGGTGACAGGGACTCCGTCATGGAGAGGAGCGCGGGAGCGACGGCGAGTGTTTCGGGATCGACGGCGGGGTTGG
AGGCACCGGCCATGGCACGTGGCGGCTGACGGCCGGCGAAGCCGCCGGTTTTCCGGCTGGGTACGGGAGGGAAAATGACC
GCGCGCGAAGGGTTTGCGACACACTCTCGATTTTGCGGTAGCGGAGCCACTGTCACATCTTTGCCCCATGTCGAGCCTTT
TTTTAGGGCTGCCCAATTTTTTTAAATTTTTTTGCTATTGGACTACCGTTGAAGAGGGTTTTTAGACCTCCTATGCCTTA
AAAACGGTATGTGCCCTAATATTATACTTGGCCATATCTCGGGCCGGGCCGGGCTAAAAAAAGCCCGGTGCTGAAAACCC
AGGCCCGAGCCCGGCCTGAACCTGGAAAAGCCCGACACGGCCTGCTCGGCCGACCACGGCTAAAAATCCATTTTCACAGG
CCCGAGCCCGGCCCGATCTGCCCGTCGGGCTTGATTTGCAGGCCCAAACCCGGCCCGATGGCATGTTCGGGCTTAGCCAG
GCCCGGGATTTTCGGGCTGGGTCGGGTCGGGCCGTCCGGGCCGAGCTGCCCGTGGCCAGGTCTACCTATTATATGGCTGC
TATTGGAGATGCTCTAACGGGCGACACACTTGTGCTACCCTGTGTGTCACGTCGCTGATTGTCTTAAACCTGTTTACCGG
TTTGTTTCATCAAATGAAATGAAATCGGGGCACGCCCCTCAATTCGAAAAGAAAATAGAAGCTCCTCCGATGAAGGACGG
CCGCCCGCACGACGCGACGGCTAACCGCCGCTTGACCCGTGGGAGCGAAGTCAAGCACGCGCTTGCCCA-------TGTC
GCGCGCGCACACACACACGACAGCGGCCGGCCAGACGGAGACCCGTCGTCGCGGTTGACGTTGAATTCCACCGCGCGCG-
---------------------CAGCAGCTAGGACACACTTGTCGCTCGCTGCTGCTCGACAGCCGAACCCATCTGCGCCG
GTCAGCTAGCAGCCACAGAGAGTGGTATGTGAGCAGAGCACGTCACGTTTCCTAATCCTCGCTACTAGTACGCGCGTGGC
CCGGTCCGGCCGGCGGCCCCGACGTCGCGCCGCCAGAGTCTTTCTCTGACT-GTTTGGCGCGTGAGCGAGCGAGCAGGGA
AGTCTTTCTCTGCTGTCCCCGGCGGCGTGGGGTGCC--TGGTCTTTGGTTGTGCTAGCTAACTCGTTAGAGCCT----AG
ATGCCGCCGGCCGCCGCGCCGTGGTCGTGGGCGTGCTGCGGCCGCAGGAGGAAGAGCGCCGGGGGCGGCGCGGGGGACGG
CGACGGCGCCGGCGCGTCGGGGCGGGACGGTGACCAGTGGACGCTCTTCATCGACCTGCCCGTGCTGGAGGCCGCCACCG
CCGGCTTCTCCGACGGCAACCTCCTCGGCCGCGGCGGCTTCGGCCCCGTCTACAAGGCAAGCGACCAGCAACCTCCTCCT
CCTTGTTGCTCTCCCCCGGCGCACGCTTCAATCCACTGACCTCGTTGATCTT------------------CAGGGCGTGA
TGGAGGGCGGGCAGGAGATCGCGGTGAAGCGGCTGTCGCTGGAGTCGCGGCAGGGGGTGCGGGAGTTCCTCAACGAGGTG
CGGCTGCTGCTCAAGGTGCAGCACCGCAACCTGGTCTCCCTCCTCGGCTGCTGCGCCGCCGCCGGCCAAAAGATGCTCGT
CTACCCATACTTCCCCAACGGCAGCCTCGACCACATCCTCTTCGGTCAGTCACCCCCGATCCCCATTTATCCAGCCTCTG
CTTATACATCTTC-------------------------------AAACTTCAGAATTCGGTTTGTTTTTTACTCAAATCG
CGCGCCAAAACTTGGGTGGGTTTCATGCTATTTCGGCTGAAAACTTCAGCTCTCTGTGTCCAATCTGAAAATCAAAATCA
CGGAACGATTTCAGTAAATTCAGTGGTGCCTGGAATTTCAGTCAAAAAATGACAATTGAATTTTCGTGTCAACAGCAGTT
TGGTCAGACAGAGCATTCAGTCTGTTACAAGTCTTGAGTTGATGTCAGGTAGTACTAGTAATAAAGTTGGCCTTTGCGTG
CTCATATAGCAGCTGGTTCCAAGTATTATCATTGACCTTGACTGAATCAGAAGCAGAGTCCTGATTTCTTAACCCGGAAG
GTTCAAATGTCACATCCACACCAGACCAGTTCTTGATTAGGATTTATTCTTG-------TCAGCAAGCAAACCAGGTGCA
GTTGTGTATATACATAAAGATGCCAAATTACAGCAAAGAATTGGTGCGATTTGATTTAAAACGGAGTATGCCTCTTGAGT
CTA-----------------------------------------------------------------------------
-------------------------------CTGCATGAAAGGATCTCAAACACTAAGCTATCTGAGTTTATACAAGTGA
AACATG----------------------------AGAAAAACATAGAATTGGCAAAATTAT-TTTGCAGTGTTTGTCAGG
TATCTCAAAAGAATGAGCTTGTCTGAGTTCACTCTGCTCTGCAAAATCAT----AAA-------TAAAAATTACAGCTGC
ATAACAATCAATTCCTGCAAAGTAGATCAGTATACAGCACACGAAAGAAC-TTTTGGAGTTCGGTATGAGCACAATTTTA
AGCTTTAACATAAGCAGTCTGAATTTTTATATAAGCAGCATGTGCCAGC-AAATTACAGTTTCCTAACAATCGATTCCTG
CAAACTACTAGATCAGTATACAGAGCATAGAAGAGCTGCTCTGTTATCTGAACCTGCACTGCATC-GCATACTTTCAGAC
AGGGAGAAGAGGGTGCAGCTAGACTGGCCAAAACGGTACCAAATTATCCTCGGACTAGCGAGGGGCCTCCTGTACCTCCA
CGAAGAGTCTCCGGTGAAGATCATCCACAGGGACATCAAGGCGAGCAACGTGCTCCTCGACGACAAGCTGAACCCCAAGA
TCTCGGATTTCGGCATGGCGAGGCTCTTCCTCGAAGACGCGACGCACGTAAACACGTTCAGGATCTCTGGCACATAGTAA
GCCCCAAACACATGCACCACTTCCATTCAATAGGTTTTTCTTTATGATTCTGTAAATAAATAAC----AATGATGTGATT
TTTGTAGTGGTTATATGGCCCCGGAGTACGCGATGAACGGGTACCTGTCGACCAAGACCGACGTTTTCAGCTTCGGGATG
CTCGTGCTGGAGATCGTCAGCGGGAGGAAGAACATCGACCGGCATCTCGGCGACGAGAAAGTCGACCTGTTGAACTACGT
GAGCATTTCTCATTGTTAAAAAAAAAATAGATTGCATAACCTGCATTTTACTTTTTCAACATGAAGAGAGAGACATGCTC
-----------------------------TGATGTGCTGAAGAATTCA--ATTATGTTGAAACTTTCAGACATGGAAGCT
GTCAGAGGAAGGCCGGCCACTGGACATCGTGGACCCGGGCCTGTCCGGCTGGGACGCCGGCGAGGTGGCCATGTGCGTCC
AGCTCGGGCTGCTGTGCTGCCAGGCCGTCGTGTCGGACCGGCCGGACATGTACAGCGTGCACCTCATGCTGTCCAGCGAC
TCCTTCACGCTGCCCAAGCCCGGGAAGCCGGCGGTGCACGGCCGGGTCGGCCGGTGGAAGAGCACCACCGGCTCGGCCTC
CAGCTCCGCCTCCGGCGCGAACACGAACACCACGTTCGCCACCGACACGACCAAGGCCTCGACGCTGGGAAACATCGCTG
AAGATGAATCCAGGAACTCCATTTCCATATCCTTCACCACTGAAGGCCGGTAAAAAATGGTACTCTAGTAAGAAATCAGA
CGGTGTAGTGATGGCGCGACCGTGCGAGTGGATAATGCACTCTAGATCTAGTACAGGAGGCAGTGATGG-----------
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-----------------------------------------------------------------TTCCAGAAGCATCCG
GTCCAGTTTTCTTTTACCGTTTTTACTAGCTTTTCCATTTTCTCCTGTTTTAAATATGTTCAGAAATTTCAGGGTTTATT
TGGAAATCAGAAAATGTTAGGAAATTTCAAATCTTATTTGGAATATTTTTTAGAATGATTCTT--TTTGCAAAATGGAGA
ACTTTTGAAAGTTTCAACATTGGTTCGGGATTTTTGAAATTTGCTTGGTAATTTCAAATTTGGTTCAGAATTTGTAAAAA
ATTATTAGAGATTTCAAA-------------------------AACAAAACAGAAATAAAAAGTATTTGGAACTTTAATA
CTGT-TAAAAATTAATTTTGACGGGATTTTTAGAAATCTATTTGAAAAAAACACACTACAGTTATTTTTTGAGCAAAAAC
ACACTATATTACATCTCACTACAGTGCCACATGCCACTATAGTTTTTTAATGGGCTAGCCTAGTTAGGGGTGCCCTGTGC
AAAATGCTTCCTATTTGACGTGTTATATCTTTGTATTCCGATGATCATTAATTAATAAACCTAGTGGAATATGATCCAAA
AAATTGATGCACTATA---------------CGTCAAATAAGCAATCCCGCAAGTCCTGGCATGACAAAGCACCACATAC
ACCTATTAGTGGGCCATTTTCCGATGGACCTCGATTGGGTGGACAT---------
>chr3A_627
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------------------------------------------------------------------GAC-----------
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------------------------------------------------------------------------------GG
CCGCCCGCACGACACGACGGCTAACCGCCGCTTGA-CCGTGGGAGCGAAGTCAAGCACGCGCTTGCCCA-------TGTC
GCCCGCGCACACACACACGACAGCGGCGGC-CGGACGGAGACCCGTCGTCGCGGTTGACGTTGAATTCCACAGCGAGCG-
---------------------CAGCAGCTAGGACACACTTGTCACTCGCTGCTGCTCGACAGCCGAACCCATCTGCGCCG
GTTAGCTAGCAGCCACAGAGAGTGGTATGTGAGCA-----CGTCACGTTTCCTAATCCTCGCTACTAGTACGCGCGTGGC
CCGGTCCGGCCGGCGGCCTCGACGTCGCGCCGCAGAGCTTTTCTGCTCGCCAGTTCGGCGCGTGGGCGAGCAGGGTGGAG
---CTTTCTCTGTTATCTCCGGCGGCGTCGCG--GCGTTGGTCTTTGATTGTGCTAGCTAGCTCGCTAGAGCAC----AG
ATGCCGCCGGCCGCCGCGCCGTGGTCGTGGGCGTGCTGCGGCCGCCGGAGGAAGAGCGCCGGGGGCGGTGCGGGGGACGG
CGACGGCGCCGGCGCGTCGGGGCGGGAGGGGGACCAGTGGACGCTCTTCATCGACCTGCCCGTGCTGGAGGCCGCCACCG
CCGGCTTCTCCGACGGCAACCTGCTCGGCCGCGGCGGCTTCGGCCCCGTCTACAAGGCAAGCAACCTCCTCGCCG----T
CTCCCTGCGGCGCGAGCGCG------CTTGGATCGATCGCTGATGAAATCTC--------CATGCATGTGCAGGGCGTGA
TGGAGGGCGGGCAGGAGATCGCGGTGAAGCGGCTGTCGCTGGAGTCGCGGCAGGGGGTGCGGGAGTTCCTCAACGAGGTG
CGGCTGCTGCTCAAGGTGCAGCACCGCAACCTCGTCTCCCTCCTCGGCTGCTGCGCCGCCGCCGGCCAGAAGATGCTCGT
CTACCCCTACTTCCCCAACGGCAGCCTCGACCACATCCTCTTCGGTCAGTCACCCTCGATCGCCCCAGCTTATCCTTCCA
ACCTCGATCAGCTTACAATTCAGTCAAAAACAGTTCAGAGTTCAAAAAAACGGAATTCAGATTGTTTTTTAC-CAAACTG
CGCGCCAAATCTTGGTTGGATTTCGTA----TTTTGATGAAAACTTTCTCCCTCGGTCCAAACTGAGACCGAAATCACTA
ATGGAT--TTTCAGTAAATTCGGTGGTGCCTGAAATTTCAGTCGAAACG-GGCAATTGAATGTTCGTGCCAACAGCAGTT
TGGTCAGACAGAGCATTCAGTCTGTTGCAAGTCTTCAATTGATATCA------ACTAGTATTAAAGTTGGCCTTGCCGTC
CTCATATAACAGCCGGTTCCAAGTATTATCATTGACCTTGACTGAATCAGAAGCAGT-TCCTCGTTTCTTAACCTGGAAG
GTTGGAATGTCATATTCAGAGCAGACCAGTTCTTGATCACGATTCTTCTTCGTCTTATATCAGCAAGCAAAGCAGATGCA
GTTGTGCATATGCAGAACAAAAACAAATGCACTACGTAAATTTATGACAAATATCTTTGCGCAATTTGGTAACACGCAAT
ACTCCCTCCGATCCGAGTTAACCGACGCTGACTTAGTACAACTTTAGTACGAAGTCGTACTAACTCAGCGTCAATTAATT
TGGATCAGAGGGAGTCATATGTTTCTGCAGTCTACATGAAAGGATCTCAAGCAGTAATCTGTCTGAGTTTACAAAGTGAA
GCAATGCATTCACAATGCGAGACAAGTTGGAAGTAGAATAAAAAAAAATTGTCTATAATGTCTTGTATGAGCAATGATTT
CGAATAATGAGCTAA-------CTGAGTTTACTCTGTTCTGCAAATTAAATCATTTTTCTTCTGAAAAAATTACAAGCAA
AT------------------------------------ACAGAAAGTAAC-TGCTGGAGTTCGTT------ACAATGTTA
AGCTTTGACATAAGCAATCTGACTTTTTAGATAAACAGCATACGCCAGT-ATGTTACAACTGCATAACAGTCAATTCCTG
CAAATGGAAAAA-CAGTATACAGAACACAGAAGAACTGCTCTGTTATCTGAACCTGCACTGAATC-GCTTACTTTCAGAC
AGGGAGAAGAGGGTGCAGCTAGACTGGCCAAAACGGTACCAAATAATCCTCGGACTAGCAAGGGGCCTCCTGTACCTCCA
CGAAGAGTCTCCGGTGAAGATCATCCACAGAGACATCAAGGCGAGCAACGTGCTCCTCGACGAGAAGCTGAACCCGAAGA
TCTCGGATTTCGGCATGGCGAGGCTCTTCCTCGAAGACGCCACGCACGTGAACACATTCAGGATCTCTGGCACGTAGTAA
GCCCCAAACACATGTACCACTTCCGTTCAGTAGGTTTTT---TATGATTGTGTAAATAAATAACAGGAAATGATGCGATT
TT-GTAGTGGTTATATGGCTCCAGAGTACGCGATGAACGGGTACCTGTCGACCAAGACCGACGTTTTCAGCTTCGGGATG
CTCGTGCTGGAGATCGTCAGCGGGAGGAAGAACATCGACCGGCATCTCGGCGACGAAAAAGTCGACCTGTTGAATTACGT
GAGCATTTCTCATTATTCAAAAG---A-AGATTGCATAACCTGCATTTTACTTTGTCAATATGAAAATAGTGACTATAAG
TGATAACTAAACATTGTCATGTGATAATGTGATGTGCTGAAGAATAAATCTCTATGGTGAAACTTTCAGACATGGAAACT
GTCAGAGGAAGGGCGGTCACTGGAGATCGTGGACCCGGGCCTGTCCGGGTGGGACGCCGGCGAGGTGGCGATGTGCGTCC
AGCTCGGGCTGCTGTGCTGCCAGGCCGTCGTGTCGGACCGGCCGGACATGTACAGCGTGCACCTCATGCTGTCCAGCGAC
TCCTTCACGCTGCCCAAGCCCGGGAAGCCGGCGGTCCACGGCCGGGTCGGCCGGTGGAAGAGCACCGCCGGCTCGGCGTC
CAGCTCCGCCTCCGGCGCGAACACGAACAGCACTTTCGCCACCGACACGACCAAGGCCTCGACGCTGGGAAACATTGCTG
AAGATGAATCCAGGAACTCCATTTCCATATCCTTCACCACTGAAGGCCGGTAAAAAATGATACTCTAGTAAGAAATCAGA
CACAGTAGTGATGGCGCGACCGTGCGAGTGGATAATGCAATCTAGAT-TAGTACAGGAGACAGTGTTGTTAGTCTGGG--
------TGAATATATGTCGTTTGGAATTTCATGCGTAGATGAATACTTCGTAATGAGCTGACGAATGAGTTTTTTTTTTA
GGAATAACAGACAAATCAGTCCGGATGTTGTTCCTATCAC-TTGAACTGCAAAAACGTCTTATATTTTGGTACGGAAGG-
GTGGTAAAAATGGACGGCCCAATAGATACTGTAGACAATATATAGTGGGTTCAAGTTTTGGGAAATTTCCAAAGCATCCG
GTCCAGTTTTCTTTTACCGTTTTTTCTAGCTTTTCCATTTTCTCGTGTTTTAAATATGTTCAGAAATTTCAAATTTTGTT
TGGAAATTAGAAAATGTTAGCAAATTTCTAACTTTGTTTGGAATATTTTTGAGAATTTTTTTT--TTTGCAAAATGGAAA
ACTTTTGAAAGTTCCAACATTTGTTCAGAGTTTTTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
-SS-SS-S-SSS-SSSSSS-S--S-SSSSSS-SS-S-SSSSS--SSS-S-SS-SSSSSSSSSSSSSSSSSS--SS-SSS-
SSSS-S-SSSSSSS-SSSSS-SS-S-SS-SSS-SSSS-SS-S-SS-SS-S--SSS-SSS--S-SS--SSSSS--S-SSSS
SS-SSSSSS--SSSSSSSSSSSSSSSSSSSS-SS--S-SS-SSSSSSSSSSSSSSSSSS-SSSSSSS-SSSSSSS---SS
-SSS-S--S--SSSS--SSS---SS-SS-SSS-SS-S-SS--SS-SSSS--S-SSS----SSS---SSSSSSSSSSSSS-
-SS-SSSSSS-SSSS--SSS-SSSSSSSSSS-SS---SS-SSSSSSSS-SSSS-SSSSS-SSSSSSSSSSSSSSSSS-SS
SSSSS--SS----SSSSSSSS-S--SSSSSSSSSSS--SSSSSSS-SS-S-SSSSSSS-SSSSSSSSS---SS-SSSSSS
S-SSSSSSSSSSSS-S-SSS-SSSSSSSS-S-SS-S-SS-SSSSS--SS-S---SS-SSSSSSSSSSS--S-S--SS-S-
S-SS-SSS-SS-S-SS----S-SS--S-SS-SSSSS-SSSSSSSSSSSSSS-SS---SS---SSSS--------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
----------S-----------------------------SS----------------------SS-SSSSSSSSS-SS-
----S---S-SSSSS-S-------------S---S----------------S---------S--------SSS-S-S--S
SSSSSSSSSSSSSSSSSSSSS--------S--S------------S-----------S--S-------------------
-----------------------------SS-SSS---------------------------------------------
----------------S---------------------S----------------------S-----SS-----------
---SS-----S----------------S-----S--------S-----S--------------------SSSSSSSSS--
------------------S-------------------------------------------------------------
-------S----------------------------------S-------------------------------------
-------------------------------------------------S-------------------------S--S-
---------SSSS-SSSS--SSSSS-----------------------SSSSSSSSSSSS-------------------S
----S---------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------SS-----S----S-----
-----S-----S------------------S---S-------------------------------------------SS
----S-----------S--------------S--------S--------------S------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------------S--------------S--------------------------S--------------
--------------------------------------------------------------------------------
------------------------------------S-------------------------------------S-----
--------------------------------------------------------------------------------
---------------------------------------------------S-S--------------------------
---------------------------------S---------S------S----------S------------------
--S----------------------------------------------S------------------------------
----------------------------------------------------------------SS----S---------
---S-------------------------------------------------------------------S--------
S-----S--S----------------------------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------------------------S-----------S----------------------
----S-----------------------S-------S-------S-S--------S------------------------
-----------------S------------------------------------------S-------------------
------S--------------------------------------------S----------------------------
-------SS-----------------------------------------------------------------------
---S-----S-----------------------------S----------------------------------------
----------------------------------------------------------------------S---------
---------------------------------------------------------------S----------------
--------S--------------------------------------------S------S--------S----------
----------------------------------------S--S------------------------------------
------------------------------S--S-------------------------------------------SSS
SSSSSS-------------S-S-----------------SSS-SS-SSSSS-SSS-SSSSSSS-SS------------S-
S-----S---------S----------S----S-SSSSSSS------------------S----------------S--S
--S--------------S--S----------S-----S-----------S--SS-------S-SS-----S--------S
------------------S-------------------------------SS--------S-------------------
-SS---S---------S-------S----S--------------------SSS-S-S-SSS--SS-------S-------
-----------------------------S------------S-----S------------S--------S-S-S---SS
SSS-SSS-S-S-SSS--SSSSSSSSSSSSSSSSSSSSSSSSSS--S---SS---S---S--SS---------S-------
SSS-S-S----S--S------S-S-S----------------S---------------------------SSSS-----S
--------S---------------------SS-S-S----S-------------S-SS----------------------
----------------SS--------------------------------------------------S----S----S-
-S-S-SSSSSSS-SSSSSSSSSSSSSSSSSS----------SSSS-------S-------S---S---------SSS---
---------------------------S---S--------------SSSSSSSSS
>forward_142
--------------------------------------------------------------------------------
------------------------------------------ATGTGTGTGTTGTGTGGGGT------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_3778
--------------------------------------------------------------------------------
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-----------------CGCTTGGACCTTGGATCGAT-------------------------------------------
--------------------------------------------------------------------------------
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>forward_3200
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------------------------------------------------------------TCGAATTCCAAGTCCCACGG
--------------------------------------------------------------------------------
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-------------------------------------------------------
>reverse_5290
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---------CCCGGTGAAGATCATCCACA---------------------------------------------------
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-------------------------------------------------------
>forward_3203
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---------------------------------------------------------------AATTCCAAGTCCCACGG
TCC-----------------------------------------------------------------------------
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>reverse_5368
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-------CTTCGGCATGGCGAGGCT-------------------------------------------------------
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-------------------------------------------------------
>forward_3422
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------------------------------------------TTCTCTGACTGTTTGGCGCA------------------
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-------------------------------------------------------
>reverse_5525
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----CAGTGGTTATATGGCCCCGG--------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>forward_5011
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-------------------------------ATGCAGCACACGGAAGAACT-----------------------------
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-------------------------------------------------------
>reverse_6417
--------------------------------------------------------------------------------
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----------------GAGTCCGGATGGTGTTTCCT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
