CLUSTAL X (1.81) multiple sequence alignment input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTGGGGAGATGGGTTGCGGCCGAAGAAGATGACCCCTTTTCACAGGTTGG chr1D_1 TTGAGGAGCCGGGTTGCAGCCGATGAAGACGACCCCTTTTCACAGGTTGC chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 CGTCGG-------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 CTCCCCT------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---S----SS-------S-----S-----S-------------------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TCCTTCGGCTCAAGATCACAACCCATCAACTGATGAGTTGGAGCGATAAG chr1D_1 TCCTTCGGCTCAAGATCACGGCCTGTCAGCTGATGAGTTGGAGCGATAAG chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------SS--SS---S--------------------- forward_74 ----TCGGCTCAAGATCACAACCC-------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TAGGATGAAATGTGTGAGGTTGAAACTTACAATGGCTCTTGAGCTCAATT chr1D_1 TAGGCGG-AATGTGTGAGGTTGCAACTTACAATG------GAGCTCATTT chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----SS-S--------------S-----------SSSSSS-------S-- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TCGGCTCAATGCGGTCATGGAAATGCGATAGCTCTTGGAGTGCGAGGTCG chr1D_1 TCGGCTCAATGCGGTCATGGAAATGCGGTAGCTCTTGGAGTGCGAGGGCA chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------------------------S-------------------S-S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GTCCCATGCTAGGCTTTAGCGGACGTACCCAGGGCTCGTCGATGGAGTGC chr1D_1 GTTCCATTGTAGGCTTTAGCGGACATACCTAGGGCTCGTTGATGGAGTGC chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S----SS---------------S----S---------S---------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ACCATGGCACAACAACGATTGAATAATGTTTGATTGA------------- chr1D_1 ACCATGACACAACAACGATCGAAGAATGTTTGATTGAGTAAGAACGACAA chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------S------------S---S-------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -AATACAACATTCTTTCACCATGTGCCAACACACCTCCTATCAAAAGCAG chr1D_1 TAATACAACATTATTTCACCATGCGCCAACACACCTC-TATCAAAAGCAG chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------------S----------S-------------S------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ACAAAGGTGATCCACTATTTTTTATTGTAAACATTCTTTTATAAATTTGG chr1D_1 ATATAGGTGATCCACTATTTATTATTATAAACATTCTTTTATAAATTTGG chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -S-S----------------S-----S----------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTAAAATATGATTATCCAACCCACTCCAACCCTTTCAACGAAACAACAAA chr1D_1 TCAAAATATGGTTATCCAACCCACTCCATCCCTTTCAACCAAACAACAAA chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -S--------S-----------------S----------S---------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 AATTGGCTATT---ACTGACCACATGGTTGCGAATATCCTCAGCCAACTC chr1D_1 AATTGGCTACTACCACTGACCACATGTTTGCCCAT--------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------S----------------S----SS--SSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 AACCTTACTCGCGAATCAAACTCAACCCTAATGGTTAAAAGCAGGGTGAT chr1D_1 ------------GAATCAAACACAATCCTAGTGGTTAACAGTGTGGTGGT chrUn_527 -------------------------------------------GGGTGGT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSS---------S---S----S-------S--SS-----S- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GTCCGACCATGCAGCCATGGCCGAAGTCGCTTTCAACAACTTTGATCTGG chr1D_1 GTCCGACCATGCGGTCATAGTCGAAGTCGCTTTCAACCACTTTTATCTGG chrUn_527 GTCCGACCATGCGGCGATGGTCGATGTC-CTTTCAACCACTTTAATCCGA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------------S-------S----------------S-----S------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTCTCAGTGGAAGCGAGCATCAT--------------------------- chr1D_1 TTCTCGGTGCAAGGGAGCAGGGGCGTAGCCAGGCCCCAGGCTACCAGGGC chrUn_527 TTCTCGGTGCAAGT------------------------------------ chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----S---S---S-----SSSS--------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 --CTCAGTGGAAGCGAGCATCA---------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 CATGGCCTGGGGCGTGGCCGGCTGATACTTCGTTGACTGTAGCTATAGAA chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 TCATTGTTTGGCACTGTTTCGCACTATACCAATGATGTTGGCCCCGGGCG chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ---------------------------------------GAGTTTGCACC chr1D_1 TGGCTTCAGCCTGGCTACGCGATTGCAAGGGAGCATCACGAGTTTGCGCC chrUn_527 ------------------------------GAGCATCGCGAGTTTGCACC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 CAGATAAACTAGGCTCATGCTAGGA--GGACTTGGCCATCTTCAGCAATA chr1D_1 CCGATAAACTAGGCTCATGCGAGGA--GGACTTGACCAACTTAGGCAATA chrUn_527 CGGATAAAAAAAAGGCCCACGATAGGTGGACTTGACCATCTTAGGCAATA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -S------------------S-------------S-------SS------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTTGATTGCTATTTTCCTTTCAAATCCATAATTAATTCTTTCCATCGTTC chr1D_1 TTTGATTGCTATTTTCCTTTCAAACCAGGAATTAATTCATTCCATCGTTT chrUn_527 TTTGATTGCTATTTTTCTTTCAAACCAGGAATTAATTCATTCCATTGTTC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------------------------S-SSS---------S----------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 CAAAAGGCAACCATTAATTAGATAAGAAACTCGCAGCAGAAACAAAAGTA chr1D_1 CAAAAGGAAACCATTAATTAGATAAGAAATTCGCAGCAGAAACAATAGTA chrUn_527 CAAAAGGCAACCATTAATTAGATAAGAAATTCGGAGCAGAAACAATATTG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------------------S---------------S---- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTATCAACAAATGCGCCGGACCTCGACTCAAATCCACCGACGAATTAATC chr1D_1 TTACCGATGAATGCGTTGGACCCTGACCCAAATCCATCGACGAATTAATC chrUn_527 C---CAACGAATGCGCCGGACCCTGACCCAAATCCATTGACGAATTAATC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---S----S-------------SS---S--------S------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GACGGCATT--TAACCCTAATAAAGTGAAACCCAAAATAATAGAAAACCA chr1D_1 GACAACATTTATAACCCTAATAAAGTGAAAATGCAACATCACACAAACCT chrUn_527 GGCAGCATT--TAACCCTAATAAAGTGAAACCCAATATCACAGATAA-CT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---S----------------------------------S-S--------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ATAAATAAAAACAGCAAAGCCCATTCC--TTTTCCTTTTGGCAAAAAAAG chr1D_1 ---AATAAAAACAGCAAAGCCCATCTCCTTTTTCCTTTTGGCAAGAAATG chrUn_527 ---AATAAAAACAGCAAAGCCCATTTCTTTTTTCCTTTTGTC-AAAAAAG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSS----------------------S------------------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GTTATGGCAATATTTGGCAGTAATTCATTTCATTCTTGGAAAAGGCAACC chr1D_1 GTTATGGCAATATTTGGCAGTAATTCACTTCATTCTTGGAAAAGGTAACC chrUn_527 GTTATGGCAATATTTGGCAGTAATTCATTTCATTGTTGGAAAAGGCAACC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ATTTACTTTTGCTTATGAAATAAGTAAAAAA------------------- chr1D_1 ATTTACTT------ATGAAATAAGAATAAAATCACAGCTAAAGAGAAAAA chrUn_527 ATTTAGTT------ATGAAATAAGAATAAAATCACAGCTAAAGAGGATAA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --------SSSSSS----------S-S----------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 --------------ATGCGGCGGACCCGGCCCGAACCCACGGATCGATCG chr1B_1_TraesCS1B01G002100 ------CAGTGGGGATGCGGCGGACCCGGCCCGAACCCACGGATCGATCG chr1D_1 AAAAG---GTGGGGATGCGGCGGACCCGGCCCGAACCCACGGATCGATCG chrUn_527 AAAAAACAGTGGGGATGCGACGGACCCGGCCCGAACCCACGGATCGATCG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CACTCGGAAGGAATGCCGGCGCCGGCGCAGGCTCCGTCCGTCGTCGCCGG chr1B_1_TraesCS1B01G002100 CACTCGGAAGGAATGCCGGCGCCGGCGCAGGCTCCGTCCGTCGTCGCCGG chr1D_1 CACTCGGAAGGAATGCCGGCGCCGGCGCAGGCTCCGTC------------ chrUn_527 CACTCGGAAGGAATGCCGGCGCCGGCGCAGGCTCCGTCT------GCCGC chr3D_1074 -------------------------------------CCGTCCTCCACCG chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------G chr4A_1086 -------------------------------------------------G chr4B_1086 -------------------------------------------------G chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------------------------------------------S------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CGTCGC---CGGCGGCGCGGCGTGGCGCCACCTGCTCCTCCTCCTGACCG chr1B_1_TraesCS1B01G002100 CGTCGC---CGGCGGCGCGGCGTGGCGCCACCTGCTCCTCCTCCTGACCG chr1D_1 CGCCGC---CGGCGGCGCGGCGTGGCGCCACCTGCTCCTCCTCCTCACGG chrUn_527 CGCCGC---CGGCGGCGCGGCGTGGCGCCACCTGCTCCTCCTCCTGACCG chr3D_1074 CGTCGGCGGC--CGCCGCGGCGTGGCGCCACCTGCTGCTCCTCCTCACCG chr6D_1084 ---CGG---CGGCGGCGCGGCGTGGCGCCACCTGCTGCTCCTCCTCACCG chrUn_1086 CGTCGG---CGGCGGCGCGACGTGGCGCCACCTGCTGCTCCTCCTCACCG chr4A_1086 CGTCGG---CGGCGGCGCGACGTGGCGCCACCTGCTGCTCCTCCTCACCG chr4B_1086 CGTCGGCGGCGGCACCGCGGCGTGGCGCCACCTGCTGCTCCTCCTCACCG chr1D_1093 ---------CGGCGGCGCGGCGTGGCGCCACCTGCTGCTCCTCCTCACCG chr7D_1093 ---------CGGCGGCGCGGCGTGGCGCCACCTGCTGCTCCTCCTCACCG chr2D_1093 ---------CGGCGGCGCGGCGTGGCGCCACCTGCTGCTCCTCCTCACCG chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CGCTCCCGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTCCAGTGGCGCGGC chr1B_1_TraesCS1B01G002100 CGCTCCCGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTCCAGTGGCGCGGC chr1D_1 CGCTCCCGCTCGCGCTGGCCCTCCTCGCGTTCGCGCTCCAGTGGCGCGGC chrUn_527 CCCTCCCGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTCCAGTGGCGCGGC chr3D_1074 CCCAACTGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTCCAGTGGCGCGGC chr6D_1084 CCCAACTGCTAGCGCTCGCCCTCCTCGCGTTCGCGCTCCAGTGGCGCGGC chrUn_1086 CCTAACCGCTCGCGCTCGCCCTCCTCGCGTTCGTGCTCTAGTGGCGTGGC chr4A_1086 CCTAACCGCTCGCGCTCGCCCTCCTCGCGTTCGTGCTCTAGTGGCGTGGC chr4B_1086 CCCAACTGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTCCAGTGGCGTGGC chr1D_1093 CCCAACCGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTAAAGTGGCGCGGC chr7D_1093 CCCAACCGCTCGCGCTCGCCCTCCTCGCGTTCGCGCCCCAGTGGCGCGGC chr2D_1093 CCCAATCGCTCGCGCTCGCCCTCCTCGCGTTCGCGCTCTAGTGGCACGGC chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GGCGGCGTGGACGACGCCGGCTCCCGCTGGCCCGCCCGCCTGGCCGTGCC chr1B_1_TraesCS1B01G002100 GGCGGCGTGGACGACGCCGGCTCCCGCTGGCCCGCCCGCCTGGCCGTGCC chr1D_1 GGCGGCGTGGACGACGCCGGCTCCCGCTGGCCGGCTCGCCTGGCCGTGCC chrUn_527 GGCGGCGTGGACGACGCCGGCTCCCGCTGGCCCGCTCGCCTGGCCGTGCC chr3D_1074 GGCGGCGTGGACGACGCCGGCTCCC---------CTCGCCTGGCCGTGCC chr6D_1084 GGAGGCGTGGACGACGCCGGCTACC---------CTCGCCTGGCCGTGCC chrUn_1086 GGAGGCGTGGACGACGCCAGCTCCC---------CTCGCCTGGCCGTGCC chr4A_1086 GGAGGCGTGGACGACGCCAGCTCCC---------CTCGCCTGGCCGTGCC chr4B_1086 GGCGACGTGGACGACGCCGGCTCCC---------CTCGCCTGGCCGTGCC chr1D_1093 GGCGGCGTGGACGACGCTGGCTCCCGCTGGCCCGCTCACCTGGCCGTGCC chr7D_1093 GGCGGCGTGGACGACGCCGGCTCCCGCTGGCCCGCTCGCCTGGCCGTGCC chr2D_1093 GGCGGCGTGGACGACGCCGGCTCCCGCTGGCCCGCTGGCCTGGCCGTGCC chr2D_1204 -----------------------------GCCCGCTCGGCTGGCCGTGCT chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTCCGCCGCCTCCTGCGTGG chr1B_1_TraesCS1B01G002100 GGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTCCGCCGCCTCCTGCGTGG chr1D_1 GGCCCCGTCGAGGCTGCAGGCCCTCCACTCCTCCGCCGCGTCCTGCGTGG chrUn_527 GGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTCCGCCGCATCCTGCGTCG chr3D_1074 GGCCCCGTCGAGGCTGCAATCCCTCCACTCCTCCGCCGCCTCCTGCGTCG chr6D_1084 GGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTTCGCCCCCTCCTGCGTCG chrUn_1086 GGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTCCGCCGCCTCCTGCGTCG chr4A_1086 GGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTCCGCCGCCTCCTGCGTCG chr4B_1086 GGCCCCGTCGAGGCTGCAGTCCCTCCAATCCTCCGCCGCCTCCTACGTCG chr1D_1093 GGCCCCGTCGAGGCTGCACTCCCTCCACTCCTCTGCCGCCTCCTGCGTCG chr7D_1093 GGCCCCGTCGAGGCTGCACTCCCTCCACTCCTCCGCCGCCTCCTGTGTCG chr2D_1093 GGCCCCGTCGAGGCTGCACTCCCTCCACTCCTCCGCCGCCTCCTGCATCG chr2D_1204 AGCCCCGTCGAGGCTGCAGTCCCTCCACTCCTCCGGCGCCTCCTGCGTCG chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGGTGCTCGCCGCCTCCGCCGG--------CCCCG---------CCTTCC chr1B_1_TraesCS1B01G002100 AGGTGCTCGCCGCCTCCGCCGG--------CCCCG---------CCTTCC chr1D_1 AGGTGCTCGCCGCCTCCGCCGG--------CCCCG---------CCTTCC chrUn_527 AGGTGCTCGCCGCCTCCGCCGC--------CCCCG---------CCTTCC chr3D_1074 AGGTGCTCT---------CCGC--------CCCCG---------CCTTCC chr6D_1084 AGGTGC---------CCGCCGC--------CCCCG---------CCTTCC chrUn_1086 AGGTAC---------TCGCCGC--------CCCCG---------CCTTCC chr4A_1086 AGGTAC---------TCGCCGC--------CCCCG---------CCTTCC chr4B_1086 AGGTGC---------TCGCCGC--------CCCCGCCGCCCCCGCCTTCC chr1D_1093 AGGTGC---------TCGCCGC--------CCC---------CGCCTTCC chr7D_1093 AGGTGC---------TCGCCGC--------CCC---------CGCCTTCC chr2D_1093 AGGTGC---------TCGCCGC--------CCC---------CGCCTTCC chr2D_1204 AGGTGC---------TCGCCGCCTCCGCCGCCC---------CGCCTTCC chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr1B_1_TraesCS1B01G002100 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr1D_1 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chrUn_527 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr3D_1074 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr6D_1084 CCTAACTCCGCGGCTGGTCCTTCCACTTCGATGCGACGGACACCCACCAC chrUn_1086 CCTAACTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr4A_1086 CCTAACTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr4B_1086 CCTACATCCGCGGCTGGTCCTTCCACTTCGACACGTCAGACACCCACCAC chr1D_1093 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr7D_1093 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr2D_1093 CCTACCTCCGCGGCTGGTCCTTCCACTTCGACGCGCCGGACACCCACCAC chr2D_1204 CCTACCTCCATGAATGGTCCTTCCACTTTGACGCGCCAGACACCCACCAC chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CCCAAGGTACCGCCTTTC-CC-AATCTCGCCTCCGTCCTCTT-CCTCGCC chr1B_1_TraesCS1B01G002100 CCCAAGGTACCGCCTTTC-CC-AATCTCGCCTCCGTCCTCTT-CCTCGCC chr1D_1 CCCAAGGTACCGCCTTTTTCC-AATCTCGCCTCCGTCCTCTT-CCTCGCC chrUn_527 CCCAAGGTACCGCCTTTC-CC-AATCCCACCTCCGTCCTCTCGCCTCGCT chr3D_1074 CCCAAAGTACTACC--TTTCC-AATCTCACCTCCGCCCTCTT-CCTCGCC chr6D_1084 CCCAAAGTACTACC--TTTCC-AATCTCACCTCTTCCCTCTT-CCTCGTC chrUn_1086 CCCAAAGTACTACC--TTTCC-AATCTCACCTCCGCCCTCTT-CCTCGCT chr4A_1086 CCCAAAGTACTACC--TTTCC-AATCTCACCTCCGCCCTCTT-CCTCGCT chr4B_1086 CCCAGAGTACTACC--TTTCC-AATCTCACCTCCGCCCTCTT-CCTCGCC chr1D_1093 CCCAAGGTACTACC--TTTCC-AATCTCACCTCCACCCTCTT-CCTCGCC chr7D_1093 CCCAAGGTACTACC--TTTCC-AATCTCACCTCCACCCTCTT-CCTCGCC chr2D_1093 CCCAAGGTACTACC--TTTCC-AATCTCACCTCCACCCTCTT-CCTCGCC chr2D_1204 CCCAAGGTACTGCC--TTTCCCAATCTCGCCTCCATCCTCTT-CCTCGCG chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GGCCGCCGGCCGA------------------------------------- chr1B_1_TraesCS1B01G002100 GGCCGCCGGCCGA------------------------------------- chr1D_1 GGCCGCCGGCCGA------------------------------------- chrUn_527 GGCCGCCGGCCGA------------------------------------- chr3D_1074 GGTCGCCGGCCGATGTGTCCGACCTGTGAAGCAGGAAGCTTGTTCGATGA chr6D_1084 GGTCGCTGGCCGA------------------------------------- chrUn_1086 GGTCGCCGGCCGA------------------------------------- chr4A_1086 GGTCGCCGGCCGA------------------------------------- chr4B_1086 GGTCGCCGGCCGA------------------------------------- chr1D_1093 GGCCGCCGGCCGA------------------------------------- chr7D_1093 GGCCGCCGACCGA------------------------------------- chr2D_1093 GGCCGCCGGCCGA------------------------------------- chr2D_1204 GGCCGCCGGCCGA------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GAGAAATCCCTGCCTCACGATTTGCTTCGTGAAGGCCAGAATTTCGCTCT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TTGTTTGTCTACTGAAAAACCTCCATGTGGGGATAGATGTCATCATATAA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TGCGTGCAGTAAAATTATTCTGACTGTATTCTGTATCATTATTTTGGTTA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GTCTAAAAATAATAATTTGGTTAGATTTGTCTTGAAGAATAGATTCAACC chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TATACTTCTAGGTTTTGATACAGAAAATAGAAATTTGTTGCCAAAGCTGT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GTATGGAGACTATTTCAGTATCTGGAAGTACACTTGTGACCGGAGGCATG chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GCCGCTGTTGCTGCCAACATAGTGGCAGTGAGCGCAATCTGGGAGTAACA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 AGCACACTGTTTAGTAGGTGCGTTGTCCCTAGATTTTCTTATCCATGAGT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 ATACCGTAGTAAATTGCATACCTCACTGGTGTACAGATGTGTTTGTGGCA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TAGTTCCCAACTAACCGTTGCTGATATTTGTTTTTAGGAGGGGATGGAGA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GCTTTACAAATGGGAATGTTAGGTTATTGAAGCATGAACGCAGCATTGTT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GCAGAGGATGATCTTGACCGTCGGTGGCAGGAAGCCACTGGAGAGGCTGT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TTCCGAGGTCTCCAACCGCCCTGCACTCACTGTCCATCCAATCGGTTGGT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TCTGCATTCATTGGTCTGTATCTTGTTTAACACAAAGGTGCAATCAAACC chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TCGATATGTTATGTGTAAAATCCTATTAAATACGTAAATATGATACCATA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TACAAATTGTTAATACATTCAAAAGTTACTGCACTTATTCTTCTAGCATA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 CAGGCAGTTAATTATATTCTATATTTTTCCTGATTTCCCTGTATACTGTG chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 AGCCTGCAATTGTTTGGTTTCATGGTTTGTGAGCAATGTCCATGCTTTTC chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 AACCCACATGCATACAGGCATGTTGATTACTAATTAGTGGTTCCTTCTTA chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 CCACAATCATTGTTTTATAATTGATCGTTTGCTCATTCTTGTGAATCTAC chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 TTCTGAAGGTGTGCCACATCTGAGGGAGGATGAGACCCCCCCCCCNNNNN chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 NNNNNNNNNNNNNNNNNNNNNNNNNNGGTTCCGGTTGATGCAAAAGGTTG chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 CTGCAGACCAAGGTCTTGTTCCAGAGTTTGAGGTACGTTGCTTCCTTGAT chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 GCCTTTTCTATTTCCGAATCAACTGATTTTAATACTGATTGCTTTTGAAG chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 ATTACACTTGAAGCTACTCACCATGGACCACCATGAAGCTACTCACCATG chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -----TGTGCCTGGCCTAGGCAATGATCTTTCGCCCTTGGT--------T chr1B_1_TraesCS1B01G002100 -----TGTGCCTGGCCTAGGCAATGATCTTTCGCCCTTGGT--------T chr1D_1 -----TGTGTCTGACCCGCTGATCTT----------TCGCCCTC----CT chrUn_527 -----TGTGTCTGGCCTGCTGATCTT----------TCGCCCTCCCGTCT chr3D_1074 GCCGATGTGTCCGACCTGCTGATCTT----------TTGCT--------T chr6D_1084 -----TGTGTCCGACCTGCTGATCTT----------TTGCT--------T chrUn_1086 -----TGTGTCCGACCTACTGATCTT----------TTGCT--------T chr4A_1086 -----TGTGTCCGACCTACTGATCTT----------TTGCT--------T chr4B_1086 -----TGTGTCCGACCTGTGAAGCAGGAAGCTTGTTCGATGTGAGAAATC chr1D_1093 -----TGTGACCGACCTGCTGATCTT----------TTGCT--------T chr7D_1093 -----TGTGACCGACCTGCTGATCTT----------TTGCT--------T chr2D_1093 -----TGTGACCGACCTGCTGATCTT----------TTGCT--------T chr2D_1204 -----TGTGTCTAGCCTGCTGATCTT----------TCGCCCTC----CT chr1B_1458 ------------------------------------TTGCT--------T chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------S--------S-S-SSSSSSSSSSSSSS---S---------- forward_74 -------------------------------------------------- reverse_3175 ------------------------GATCTTTCGCCCTTGGTTGG------ forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GGCTGCCAGGT--------------------------------------- chr1B_1_TraesCS1B01G002100 GGCTGCCAGGT--------------------------------------- chr1D_1 GTCTGCCAGGT--------------------------------------- chrUn_527 GTCTGCCAGGT--------------------------------------- chr3D_1074 GCTTGCCAGGT--------------------------------------- chr6D_1084 GCTTGCCAGGT--------------------------------------- chrUn_1086 GCTTGCCAGGT--------------------------------------- chr4A_1086 GCTTGCCAGGT--------------------------------------- chr4B_1086 CCTGCCTCACGATTTGCTTCGTGAAGGCCAGAATTTTGCTCTTTGTTTGT chr1D_1093 GCTTTCCAGGT--------------------------------------- chr7D_1093 GCTTGCCAGGT--------------------------------------- chr2D_1093 GCTTGCCAGGT--------------------------------------- chr2D_1204 GTCTGCCAGGT--------------------------------------- chr1B_1458 GCTTGCCAGGT--------------------------------------- chr2D_1467 ---TGCCAGGT--------------------------------------- chr6B_1467 ---TGCCAGGT--------------------------------------- chr5B_1467 ---TGCCAGGT--------------------------------------- chr2A_1467 ---TGCCAGGT--------------------------------------- chr7A_1467 ---TGCCAGGT--------------------------------------- SNPs -S------------------------------------------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ----------------------------------------GTGCGTGCAG chr1B_1_TraesCS1B01G002100 ----------------------------------------GTGCGTGCAG chr1D_1 ----------------------------------------GTGCGTGCAG chrUn_527 ----------------------------------------GTGCGTGCAG chr3D_1074 ----------------------------------------GTGCGTGCAA chr6D_1084 ----------------------------------------GTC------- chrUn_1086 ----------------------------------------GTGCATGCAA chr4A_1086 ----------------------------------------GTGCATGCAA chr4B_1086 CTACTGTAAACCTCCATGTGGGGATAGATGTCATCATAGAATGCGTGCAG chr1D_1093 ----------------------------------------GTGCGTGCAA chr7D_1093 ----------------------------------------GTGCGTGCAA chr2D_1093 ----------------------------------------GTGCGTGCAA chr2D_1204 ----------------------------------------TTGCGTGCAG chr1B_1458 ----------------------------------------GTGCGTGCAA chr2D_1467 ----------------------------------------GTGCGTGCAA chr6B_1467 ----------------------------------------ATGCGTGCAA chr5B_1467 ----------------------------------------GTGCGTGCAA chr2A_1467 ----------------------------------------GTGCGTGCAA chr7A_1467 ----------------------------------------GTGCGTGCAA SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ACGAGCA------------------------------------------- chr1B_1_TraesCS1B01G002100 ACGAGCA------------------------------------------- chr1D_1 ACGAGCA------------------------------------------- chrUn_527 ACGAGCA------------------------------------------- chr3D_1074 ACGAGCA------------------------------------------- chr6D_1084 -CGAGCA------------------------------------------- chrUn_1086 ACGAGCA------------------------------------------- chr4A_1086 ACGAGCA------------------------------------------- chr4B_1086 TAAAATTATTCTGACTGTATTCTGTATCATTATTTCTCTATCCTAATGGA chr1D_1093 ACGAGCA------------------------------------------- chr7D_1093 ACGAGCA------------------------------------------- chr2D_1093 ACGAGCA------------------------------------------- chr2D_1204 ACGAGCA------------------------------------------- chr1B_1458 ACGAGCA------------------------------------------- chr2D_1467 ACGAGCA------------------------------------------- chr6B_1467 ACGAGCA------------------------------------------- chr5B_1467 ACGAACA------------------------------------------- chr2A_1467 ACGAGCA------------------------------------------- chr7A_1467 ACGAGCA------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 CGACTTGGTGAATAGTCGTTCGGTCAATTTTCGCTGGGTTTTTTTCGTCA chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -----CCTCCGCCGGCCTGGACCAGATCCTGCCGTGGCTCTACTACCACA chr1B_1_TraesCS1B01G002100 -----CCTCCGCCGGCCTGGACCAGATCCTGCCGTGGCTCTACTACCACA chr1D_1 -----CCTCCGCCGGCCTGGACCAGATCCTGCCGTGGCTCTACTACCACA chrUn_527 -----CCTCCGCCGGCCTGGACCAGATCCTGCCGTGGCTCTTCTACCACA chr3D_1074 -----CCTCCGCAAGCCTGGACCAGATCCTGCCGTGGCTCTTCTACCATA chr6D_1084 -----CCTCCACAGGCCTGGACCAGATCCTGCCGTGGCTCTTCTACCACA chrUn_1086 -----CCTCCACAGGCCTGGACTAGATCCTGCCGTGGCTCTTCTACCACA chr4A_1086 -----CCTCCACAGGCCTGGACTAGATCCTGCCGTGGCTCTTCTACCACA chr4B_1086 TACTCCCACCGCCGGTTTTTT----------------------------- chr1D_1093 -----CCTCCGCAGGCCTGGACCAGATCCTGCGGTGGCTCTTCTACCGCA chr7D_1093 -----CCTCCGCAGGCCTGGACCAGATCCTGCTGTGGCTCTTCTACCGCA chr2D_1093 -----CCTCCGCAGGCCTGGACCAGATCCTGCCGTGGCTCTTCTACCGCA chr2D_1204 -----CCTCCGCCGGCCTGGACCAGATCCTGCC-TGGCTCTTCTACCACA chr1B_1458 -----CCTCCGTAGGCCTGGACCAGATCCTGCCATGGCTCCTCTACCAGA chr2D_1467 -----CCTCCGCAAGCCTGGACCAGATCCTGCCATGGCTCTTCTACCATA chr6B_1467 -----CCTCCGCAGGCCTGGACCAGATCCTGCCGTGGCTCTTCTACCACA chr5B_1467 -----CCTCCGCAGGCCTGGACCAGATCCTGCCGTGGCTCCTCTACCAGA chr2A_1467 -----CCTCCGCAGGCCTGGACCGGATCCTGCCGTGGCTCTTCTACCACA chr7A_1467 -----CCTCCGCAGGCCTGGACCGGATCCTGACGTGGCTCTTCTACCACA SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGGTCGTCGGCGTCGCGCACTTTCTGCTCTTCGTCGAGGGCAAG------ chr1B_1_TraesCS1B01G002100 AGGTCGTCGGCGTCGCGCACTTTCTGCTCTTCGTCGAGGGCAAG------ chr1D_1 AGGTCGTCGGCGTCGCGCACTTCCTGCTCTTCGTCGAGGGCAAG------ chrUn_527 AGGTCGTCGGCGTCGCGCACTTTTTGCTCTTCGTCGAGGGAAAG------ chr3D_1074 AGGTCATCGGTGTCGCACACTTTTTTCTCTTCGTCGAGGGCAAG------ chr6D_1084 AGGTCATTGGCGTTGCACACTTTTTGCTCTTCGTCGAGGGCAAG------ chrUn_1086 AGGTCATCGGCGTCGCACACTTTTTGCTCTTCATCGAGGGCAAG------ chr4A_1086 AGGTCATCGGCGTCGCACACTTTTTGCTCTTCATCGAGGGCAAG------ chr4B_1086 ------TCGTCATCGTACAATGGTTTATTTTCGTCATCATATCGAAAACA chr1D_1093 AGGTCGTCGGCGTCGCGCATTTTTTGCTCTTTATCGAGGGCAAG------ chr7D_1093 AGGTCGTCGGCGTCGCACACTTTTTGCTCTTTGTCGAGGGCAAG------ chr2D_1093 AGGTCGTCGGCGTCGCGCACTTTTTGCTCTTTGTCGAGGGCAAG------ chr2D_1204 TGGTCGTCGGCGTGGCGCACTTCCTGCTCTTCGTCGAGGGCAAG------ chr1B_1458 AGGTCATCGGCGTCACACACTTTTTGCTCTTCGTCGAGGGCAAG------ chr2D_1467 AGGTCATCGACGTCGCACACTTTTTGCTCTTCGTCGAGGGCAAG------ chr6B_1467 AGGTCATCGGCATCACACACTTTTTGCTCTTCGTCGAGGGCAAG------ chr5B_1467 AGGTCATCGGCGTCGCTCACTTTTTGCTCTTCGTCGAGGGCAAG------ chr2A_1467 AGGTCATCCGCGTCGCACACTTTTTGCTCTTTGTCGAGGGCAAG------ chr7A_1467 AGGTCATCGGCGTCGCACACTTTTTGCTCTTCGTCAAGGGCAAG------ SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 CCTGCCAGATCCTTCGCTCGCCCCCATCTCCTCCCTCACTCCTGGCAACG chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ----------------GCCGCCAAGCCCAGCGTCGCCGGCGTCCTCGAGT chr1B_1_TraesCS1B01G002100 ----------------GCCGCCAAGCCCAGCGTCGCCGGCGTCCTCGAGT chr1D_1 ----------------GCCGCCAAGCCCAGCGTCGCCGGCGTCCTCGAGT chrUn_527 ----------------GCCGCCAAGCCCAGCGTCGCCGGCGTCCTCGAGT chr3D_1074 ----------------GCCGCCAAGCCCAGCGTCGCCGGGGTCCTCGAGT chr6D_1084 ----------------GCCGCCAAGCCTAGCGTCGCCGGGGTCCTCAAGT chrUn_1086 ----------------GCCGCCAAGCCCAGCGCCGCCGGCGTCCTCGAGT chr4A_1086 ----------------GCCGCCAAGCCCAGCGCCGCCGGCGTCCTCGAGT chr4B_1086 CCCCACCAGATCCTTCGCCGCCGCCCTCGCCCTCGCAGCCGCCGCCGATT chr1D_1093 ----------------GCCGCCAAGCCCAGTGTCGCCGGGGTCCTCGAGT chr7D_1093 ----------------GCCGCCAAGCCCAGTGTCGCCGGGGTCCTCGAGT chr2D_1093 ----------------GCGGCCAAGCCCAGTGTCGCCGGGGTCCTCGAGT chr2D_1204 ----------------GCCGCCAAGCCTAGCGTCGCCGGTGTCCTCGAGT chr1B_1458 ----------------GCCGCCAAGCCCAGCGTCGCCGGGGTCCTCGAGT chr2D_1467 ----------------GCCGCCAAGCCCAGCGTCGCCGGGGTCCTCGAGT chr6B_1467 ----------------GCCGCCAAGCCCAGCGTCGCCGGGGTCCTCGAGT chr5B_1467 ----------------GCCGCCAAGCCCAACGTCGCCGGGGTCCTCGAGT chr2A_1467 ----------------GCCGCCAAGCCCAGCGTCGTCAGGGTCCTCGAGT chr7A_1467 ----------------GCCGCCAAGCCCAGCATCGCGGGGGTCCTCGAGT SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CCATCCCCGTGCGTTCCTCGCCTCATCAGTTTTCCACAAATCCAGTGCCA chr1B_1_TraesCS1B01G002100 CCATCCCCGTGCGTTCCTCGCCTCATCAGTTTTCCACAAATCCAGTGCCA chr1D_1 CCATCCCCGTGCGCTCCTCGCCTGAGATTTT-----------------CA chrUn_527 CCATCCCCGTGCGCTCCTCGCCTGAGATTTC-----------------CA chr3D_1074 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr6D_1084 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chrUn_1086 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr4A_1086 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr4B_1086 CCCTCCCCCATCTCCCTCCCTCAAACGCCGCCGCCCATCACTGTCGCCCC chr1D_1093 CCATCCCCGTGCATTCCTCGCTTGAGATTTC-----------------CA chr7D_1093 CCATCCCCGTGCATTCCTCGCTTGAGATTTC-----------------CA chr2D_1093 CCATCCCCGTGCATTCCTCGCTTGAGATTTC-----------------CA chr2D_1204 CCATCCCCGTGCGTTCCTCGCCTGAGATTTC-----------------CA chr1B_1458 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr2D_1467 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr6B_1467 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr5B_1467 CCATCCCCGTGCGTTCCTCGCTTGAGATTTC-----------------CA chr2A_1467 CCATCCCCGTGCGTTCCTCGCTTGAGATTTT-----------------GA chr7A_1467 CCATCCCCATGCGTTCCTCGCTTGAGATTTT-----------------GA SNPs -----------------------S-SSSS--SS--SSSS-SSSSSSS--- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 A---------------------------------TTTG---ACTCTGCTT chr1B_1_TraesCS1B01G002100 A---------------------------------TTTG---ACTCTGCTT chr1D_1 A---------------------------------TTTG---ACTCTGCTT chrUn_527 AGAAATCCAGT---------------ACCACCAATTTG---TCTCTGCTT chr3D_1074 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chr6D_1084 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chrUn_1086 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chr4A_1086 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chr4B_1086 CGCCACCTCTCGTCGCGGCCGCCCCCACCACCTAGGGTTGTGCTCTTCTC chr1D_1093 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCAGCTT chr7D_1093 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCAGCTT chr2D_1093 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCAGCTT chr2D_1204 AGAAATCCAGT---------------ACCACCAAGTTTGAATCTCTGCTT chr1B_1458 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTACTT chr2D_1467 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chr6B_1467 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chr5B_1467 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT chr2A_1467 AGAA-TCCAGT---------------AGTACCAGTTTC---ACTCTGCTT chr7A_1467 AGAA-TCCAGT---------------AGTACCAATTTC---ACTCTGCTT SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GT----------------TTGTTCAGAGTCTGAATCTCTGTCTCTGTTCC chr1B_1_TraesCS1B01G002100 GT----------------TTGTTCAGAGTCTGAATCTCTGTCTCTGTTCC chr1D_1 GT----------------TTGTTCTGAGTCTGGATCTATGTCTCTGTCTC chrUn_527 GT----------------TTGTTCAGAGTCTGAATCTCTGTCTCTGTTCC chr3D_1074 GT----------------T----------CTCAATCTCTGACTCTGTTTC chr6D_1084 GT----------------T----------CTCAATCTCTGACTCTGTTTC chrUn_1086 GT----------------T----------CTCAATCTCTGATTCTGTTTC chr4A_1086 GT----------------T----------CTCAATCTCTGATTCTGTTTC chr4B_1086 TGGCGTCGGTGCGTCGCCCTCGGCCCGATCTCCGGTCGCCGTCCTCCACC chr1D_1093 GT----------------T----------CTCAATCTCTGACTCTGTTTC chr7D_1093 GT----------------T----------CTCAATCTCTGACTCTGTTTC chr2D_1093 GT----------------T----------CTCAATCTCTGACTCTGTTTC chr2D_1204 GTTTGTTCTGAGTCTGTGT----------CTAAATCTCTGTCACTGTTTC chr1B_1458 GT----------------T----------CTCAATCCCTGACTCTGTTTC chr2D_1467 GT----------------T----------CTCAATCTCTGACTCTGTTTC chr6B_1467 GT----------------T----------CTCAATCTCTGACTCTGTTTC chr5B_1467 GT----------------T----------CTCAATCCCTGATTCTGTTTC chr2A_1467 GT----------------T----------CTCAATGCCTGACTCTGTTTC chr7A_1467 GT----------------T----------CTCAATGTCTGACTCTGTTTC SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TCTTTC-------------------------------------------- chr1B_1_TraesCS1B01G002100 TCTTTC-------------------------------------------- chr1D_1 TGTTTC-------------------------------------------- chrUn_527 TGTTTC-------------------------------------------- chr3D_1074 TCTTCTTCTT---------------------------------------- chr6D_1084 TCTTCTTCTT---------------------------------------- chrUn_1086 TCTTCTTCTT---------------------------------------- chr4A_1086 TCTTCTTCTT---------------------------------------- chr4B_1086 GCGTCGGTGGCGGCGCCGCGGCGTGGCGCCACCTGCTGCTCCTCCCCACC chr1D_1093 TCTTCTTCTT---------------------------------------- chr7D_1093 TCTTCTTCTT---------------------------------------- chr2D_1093 TCTTCTTCTT---------------------------------------- chr2D_1204 TGTTTG-------------------------------------------- chr1B_1458 TCTTCTTCTT---------------------------------------- chr2D_1467 TCTTCTTCTT---------------------------------------- chr6B_1467 TCTTCTTCTT---------------------------------------- chr5B_1467 TCTTCTTCTT---------------------------------------- chr2A_1467 TCTTCTTCTT---------------------------------------- chr7A_1467 TCTTCTTCTT---------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ----------------------------------------A-GGGGGTGA chr1B_1_TraesCS1B01G002100 ----------------------------------------A-GGGGGTGA chr1D_1 ----------------------------------------A-GGGGGTGA chrUn_527 ----------------------------------------A-GGGGGTGA chr3D_1074 ------------------------------------CTTTAGGGGTGTGA chr6D_1084 ------------------------------------CTTTAGGGGGGTGA chrUn_1086 ------------------------------------CTTTAGGGGGGTGA chr4A_1086 ------------------------------------CTTTAGGGGGGTGA chr4B_1086 GCCCAACTGCTCGCGCTCGCCCTCCTCGCGTTTGCGCTCCAGTGGCGTGG chr1D_1093 ------------------------------------CTTTA-GGGGGTGA chr7D_1093 ------------------------------------CTTTA-GGGGGTGA chr2D_1093 ------------------------------------CTTTA-GGGGGTGA chr2D_1204 ----------------------------------------A-GGGGGTGA chr1B_1458 ------------------------------------CTTTATGGGTGTGA chr2D_1467 ------------------------------------CTTTAGGGGTGTGA chr6B_1467 ------------------------------------CTTTAGGGGTGTGA chr5B_1467 ------------------------------------CTTTAGGGGTGTGA chr2A_1467 ------------------------------------CTTTA-GGGTGTGA chr7A_1467 ------------------------------------CTTTAGGGGTGTGA SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGAGGTCT chr1B_1_TraesCS1B01G002100 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGAGGTCT chr1D_1 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCCGGAGGTCC chrUn_527 AGGTGGTGTACAGAACCAAGGAACTTGAGGAGCAGCAGGCCCGGAGGTCC chr3D_1074 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr6D_1084 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chrUn_1086 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr4A_1086 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr4B_1086 CGGCGGCGTGGA-------------------------------------- chr1D_1093 AGGTGGGGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr7D_1093 AGGTGGGGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAAGTGGTCC chr2D_1093 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr2D_1204 AGGTGGTGTACAGAACCAAGGAGCTTGAGGAG------------------ chr1B_1458 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr2D_1467 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTCC chr6B_1467 AGGTGGTGTACAGGACCAAGGAGTTTGAGGAGCAGCAGGCCAGGTGGTCT chr5B_1467 AGGTGGTGTACAGGACCAAGGAGCTTGAGGAGCAGCAGGCCAAGTGGTCC chr2A_1467 AGGTGGTGTACATGACCAAGGAGCTTGAGGAGCAGCAGGCCAGGTGGTGC chr7A_1467 AGGTGGTGTACAGGACCAAGGACCTTGAGGAGCAGCAGGCCAGGTGGTGC SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GAATTTATTTTCGCTGCG----TTCCTCATCAGGCTATATG---ATTA-- chr1B_1_TraesCS1B01G002100 GAATTTATTTTCGCTGCG----TTCCTCATCAGGCTATATG---ATTA-- chr1D_1 GAAACAATCCTTGCCGCCCGCGTGCCTCGTCGGCCTATACACAAATTCGA chrUn_527 GAAACAATCTTCGCCGCGCGCGTGCCTCGTTGGCCTATACACAAATTC-- chr3D_1074 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr6D_1084 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chrUn_1086 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr4A_1086 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr4B_1086 -----------CGACGCCGGCTCCCCTCGCCTGGCCGTGCCGGCCCCGTC chr1D_1093 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr7D_1093 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr2D_1093 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr2D_1204 -------------------------------------------------- chr1B_1458 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTTTACACAAATTC-- chr2D_1467 GAAACAATCTTCGCTGCCCGCGTGCCTCGTCGGGCTATACACAAATTC-- chr6B_1467 GAAACAATCTTCGCCGCCCGCATGCCTCGTCGGGCTTTACACAAATTC-- chr5B_1467 GAAACAATCTTCGCCGCCCGCGTGCCTCGTCGGGCTTTGCACAAATTC-- chr2A_1467 GAAACAATCTTCGCCGCCCACGTGCCTCATCGGGCTATACACAAATTC-- chr7A_1467 GAAACAACCTTTGCCGCTCGCGTGCCTCGTCGGGATATACACAAATTC-- SNPs ---SSS--S--------------S-------S-------SS------S-- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 ------------TTTCGCTGCGTTCCTCATCA------------------ reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 --ACTTTGATGCCCATTCTGATGATGTATATGT----------------- chr1B_1_TraesCS1B01G002100 --ACTTTGATGCCCATTCTGATGATGTATATGT----------------- chr1D_1 TCATTTCGATACCCATTCTGATGATGCATATGT----------------- chrUn_527 --ATTTTGATACCCATTCTGATGATGCATATGT----------------- chr3D_1074 --GTTTCGATGCCCATTCTGATGATGTATATGT----------------- chr6D_1084 --ATTTTGATGCCCATTCTGATGATGTGTATGT----------------- chrUn_1086 --ATTTCGATGCCCATTCTGATGATGTATATGT----------------- chr4A_1086 --ATTTCGATGCCCATTCTGATGATGTATATGT----------------- chr4B_1086 GAGGCTGTAGTCCCTCCAATCCTCCGCCGCCTCCTACGTCGAGGTGCTCG chr1D_1093 --ATTTTGATGCCCATTCTGATGATGTATATGT----------------- chr7D_1093 --ATTTTGATGCCCATTCTGATGATGTATATGT----------------- chr2D_1093 --ATTTTGATGCCCATTCTGATGATGTATATGT----------------- chr2D_1204 -------------------------------------------------- chr1B_1458 --ATTTCGATGCCCATTCTGATGATGTATATGT----------------- chr2D_1467 --GTTTCGATGCCCATTCTGATGATGTATATGT----------------- chr6B_1467 --ATTTCGATGCCCATTCTGATGATGTATATGT----------------- chr5B_1467 --ATTTCGATGCCCATTCTGATGATGTATATGT----------------- chr2A_1467 --ATTTCGATGCCCATTCTGATGATGTATACGT----------------- chr7A_1467 --ATTTCAATGCCCATTCTCATGATGTATATGT----------------- SNPs ---S---------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 --------------------TTCACCTGCAGCCGCATCTGGGACGAAACC chr1B_1_TraesCS1B01G002100 --------------------TTCACCTGCAGCCGCATCTGGGACGAAACC chr1D_1 --------------------TTCACCTGCAGCCGCATCTGGGACGAAACC chrUn_527 --------------------TTCACCTGCAGCCGCATCTGGGACGAAACC chr3D_1074 --------------------TTCACCTGCAGCCGAATCCGGAACGAAACC chr6D_1084 --------------------TTCACCTGCAGCCGAATCTGGAACGAAACC chrUn_1086 --------------------TTCACCTGCAGCCGAATCTGTAACGAAACC chr4A_1086 --------------------TTCACCTGCAGCCGAATCTGTAACGAAACC chr4B_1086 CCGCCCCCGCCGCCCCTGCCTTCCCCTACCTCCGCGGCTGGTCCTTCCA- chr1D_1093 --------------------TTCACCTGCAGCTGAATCTGGAATGAAACC chr7D_1093 --------------------TTCACCTGCAGCCGAATCTGGAATGAAACC chr2D_1093 --------------------TTCACCTGCAGCCGAATCTGGAATGAAACC chr2D_1204 -------------------------------------------------- chr1B_1458 --------------------TTCACCTGCAGCCGAATTTGGAACGAAACC chr2D_1467 --------------------TTCACCTGCAGCCGAATCCGGAACGAAACC chr6B_1467 --------------------TTCACCTGCAGCCGAATCTGGAACGAAACC chr5B_1467 --------------------TTCACCTGCAGCCGAATCTGGAACGAAACC chr2A_1467 --------------------TTCACCTGCAGCCGAATCTGGAACGAAACC chr7A_1467 --------------------TTCACCTGCAGCCGAATCTGGAACGAAACC SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TGGCTATCAGGATTCTTCTACAAACCCTGCAACTACGAACTGTTTGTGAA chr1B_1_TraesCS1B01G002100 TGGCTATCAGGATTCTTCTACAAACCCTGCAACTACGAACTGTTTGTGAA chr1D_1 TGGCTCTCAGGATTCTTCTACAAGCCCTGCAACTACGAACTGTTTGTGAA chrUn_527 TGGCTATCAGGATTCTTCTACAAACCCTGCAACTACGAACTGTTTGTGAA chr3D_1074 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACAAACTGTTTTTGAA chr6D_1084 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACGAACTATTTTTGAA chrUn_1086 TGGCTCGCTGGATTCTTCTACAAGCCTTGCAACCACGAACTGTTTTTGAA chr4A_1086 TGGCTCGCTGGATTCTTCTACAAGCCTTGCAACCACGAACTGTTTTTGAA chr4B_1086 --------------CTTCGACACGTCAGACACCCACCACCCCA------- chr1D_1093 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACGAACTGTTTGTGAA chr7D_1093 TGGCTCACAGGATTCTTCTACAAGCCTTGCAACCACGAATTGTTTGTGAA chr2D_1093 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACGAACTGTCTGTGAA chr2D_1204 -------------------------------------------------- chr1B_1458 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACAAACTGTTTTTGAA chr2D_1467 TGGCTCGCGGGATTCTTCTACAAGCCTTGCAACCACAAACTGTTTTTGAA chr6B_1467 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACAAACTGTTTTTGAA chr5B_1467 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACAAACTGTTTTTGAA chr2A_1467 TGGCTCGCAGGATTCTTCTACAAGCCTTGCAACCACAAACTGTTTTTGAA chr7A_1467 TGGCTCACAGGATTCTTCTACAAGCCTTGCAACCACAAACTATTTTTGAA SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GCAATCGCTCAACATGGAGATGGCCATTGTGATGGCCCGGGTACGCATGT chr1B_1_TraesCS1B01G002100 GCAATCGCTCAACATGGAGATGGCCATTGTGATGGCCCGGGTACGCATGT chr1D_1 GCAGTCGCTCAACATGGAGATGGCAATTGTAATGGCCCGGGTATGTATGT chrUn_527 ACAATCGCTCAACATGGAAATGGCTATCGTAATGGCCCGGGTATGTATGT chr3D_1074 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATATATGT chr6D_1084 GCGGTCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chrUn_1086 GCAATCACTCAACATGGAGATGACCATTGTGATGGCCCGGGTATGTATGT chr4A_1086 GCAATCACTCAACATGGAGATGACCATTGTGATGGCCCGGGTATGTATGT chr4B_1086 -------------------------------------------------- chr1D_1093 GCAATCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr7D_1093 GCAATCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr2D_1093 GCAATCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr2D_1204 -------------------------------------------------- chr1B_1458 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr2D_1467 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATATATGT chr6B_1467 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr5B_1467 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr2A_1467 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCCGGGTATGTATGT chr7A_1467 GCAAGCACTCAACATGGAGATGGCCATTGTGATGGCCTGGGTATTTATGT SNPs -------------------------------------------S-S---- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TTGTTTGTTTGTTTTCGGCTTATCACAAGT----ATTACTTACTAGTATT chr1B_1_TraesCS1B01G002100 TTGTTTGTTTGTTTTCGGCTTATCACAAGT----ATTACTTACTAGTATT chr1D_1 TTGTTT--------TTGGCTTATCACGAGT----ATTGCTAGT------- chrUn_527 TTGTTT----GTTTTCGGCTTATCACAAGC----ATTACTAGT------- chr3D_1074 TTGTTT--------TCGGCTTATCACCAACAATTATTAATAGT------- chr6D_1084 TTGTTT--------TCTGCTTATCACCAGCAATTATTAATAGT------- chrUn_1086 TTGTTT--------TAGGCTTATCACCAACAATTATTAATAGT------- chr4A_1086 TTGTTT--------TAGGCTTATCACCAACAATTATTAATAGT------- chr4B_1086 -------------------------------------------------- chr1D_1093 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr7D_1093 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr2D_1093 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr2D_1204 -------------------------------------------------- chr1B_1458 TTGTTT--------TTGGCTTATCACCAGCAATTATTAATAGT------- chr2D_1467 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr6B_1467 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr5B_1467 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr2A_1467 TTGTTT--------TCGGCTTATCACCAGCAATTATTAATAGT------- chr7A_1467 TTGTTT--------TTGGCTTATCACCAACAATTATTAATAGT------- SNPs ------SSSS------------------------------SSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CAGTTAGTGTATCGTACTGTATTTATTATAAACAAAAATTTTTTATTACT chr1B_1_TraesCS1B01G002100 CAGTTAGTGTATCGTACTGTATTTATTATAAACAAAAATTTTTTATTACT chr1D_1 --ATTCATTTAGTGTATTATATTTATCATAAACAACGAAAAAGCGTTCTT chrUn_527 --ATTCATTTAGTGCATTATATTTATCATAAACAACGAAAAAGCGTTCTT chr3D_1074 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr6D_1084 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chrUn_1086 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr4A_1086 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr4B_1086 -------------------------------------------------- chr1D_1093 --GTTCATTTCGTGTATTGTATTTATCATAAACAAAAGGCATT-----TT chr7D_1093 --GTTCATTTAGTGTATTGTATTTATCATAAACAAAAGGCATT-----TT chr2D_1093 --GTTCATTTAGTGTATTGTATTTATCATAAACAAAAGGCATT-----TT chr2D_1204 -------------------------------------------------- chr1B_1458 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr2D_1467 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr6B_1467 --GTCCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr5B_1467 --GTTCGTTTAGTGTATTGTATTTATCATAAACAAAAAGCATT-----TT chr2A_1467 --GTTCGTTTAGTGTATTCTATTTATCATAAACAAAAAGCATT-----TT chr7A_1467 --GTTTGTTTAGTGTATTGTATTTATCATGAACAAAAAGTATT-----TT SNPs SS---S--S--SS---S---------S-----------S-S--SS--SS- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TCTTCGTGGTAGGAATCTGGCATGGACTGGATAATG---CATCTAGACAC chr1B_1_TraesCS1B01G002100 TCTTCGTGGTAGGAATCTGGCATGGACTGGATAATG---CATCTAGACAC chr1D_1 TCTTCATGGTAGGAATCTGGCATGGACTGGATAATG---CATCTAGACAC chrUn_527 TCTTCATGGTAGGAATCTGGCATGGACTGGATAATG---CATCTAGACAC chr3D_1074 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC chr6D_1084 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC chrUn_1086 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAG chr4A_1086 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAG chr4B_1086 -------------------------------------------------- chr1D_1093 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATAATCCATCTAGGCAC chr7D_1093 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATAATCCATCTAGACAC chr2D_1093 TCTTCATGGTAGGAATCTGGCATGG------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC chr2D_1467 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC chr6B_1467 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC chr5B_1467 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATA---CATCTACACAC chr2A_1467 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC chr7A_1467 TCTTCATGGTAGGAATCTGGCATGGATTGGATAATG---CATCTAGACAC SNPs -----S-------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CGATGAGTTGCTATATCCCGGTGGAGCTTCCGAGTATTCCATCAGACGCC chr1B_1_TraesCS1B01G002100 CGATGAGTTGCTATATCCCGGTGGAGCTTCCGAGTATTCCATCAGACGCC chr1D_1 CGATGAGTTGCTATATCCCGGTGGAGCTTCCGAGTATTCCATCAGACGCC chrUn_527 CGATGAGTTGCTATATCCCGGTGGAGCTTCCGAGTATTCCATCAGACGCC chr3D_1074 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGACGCC chr6D_1084 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGACGCA chrUn_1086 CAATTAGTTGTTATATCCCGGT----------AGTATTGCATCAGACGCC chr4A_1086 CAATGAGTTGTTATATCCCGGT----------AGTATTGCATCAGACGCC chr4B_1086 -------------------------------------------------- chr1D_1093 CAATGAGTTGCTATATCCCGGTGGAGCTCCCGAGTATTCCATCAGACGCC chr7D_1093 CAATGAGTTGCTATATCCCGGTGGAGCTCCCGAGTATTCCATCAGACGCC chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGACGCC chr2D_1467 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGACGCC chr6B_1467 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGACGCC chr5B_1467 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGACGCC chr2A_1467 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGATGCC chr7A_1467 CGATGAGTTGTTATATCCCGGT----------AGTATTCCATCAGATGCC SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TGTTAGCCGACGTCCCCGAGGATGTTGACATGGTTATCTTCCCTAACTAT chr1B_1_TraesCS1B01G002100 TGTTAGCCGACGTCCCCGAGGATGTTGACATGGTTATCTTCCCTAACTAT chr1D_1 TGTTAGCCGACGTCCCCGAGGATGTTGACATGGTTATCTTCCCTAACTAT chrUn_527 TGTTAGCCGACGTCCCCGAGGATGTTGACATGGTTATCTTTCCTAACTAT chr3D_1074 TGTTAGCTGACGTCCCCGATGATGTTGACATGGTTATTTTTCCTAACTAT chr6D_1084 TGTTAGCTGACGTCCCCGATGATGTTGACATGGTTATTTTTCCTAACTAT chrUn_1086 TGTTAGTTGACGTCCCCGATGATGTTGACATGGTTATTTTTCATAACTAT chr4A_1086 TGTTAGTTGACGTCCCCGATGATGTTGACATGGTTATTTTTCATAACTAT chr4B_1086 -------------------------------------------------- chr1D_1093 TGCTAGCTGACGTCCCCGATGATGTTGACATGGTTATTTTTCCTAACTTT chr7D_1093 TGCTAGCTGACGTCCCCGATGATGTTGACATGGTTATTTTTCCTAACTAT chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 TGTTAGCTGACGTCCCCGATGATGTTGACATGGTTGTTTTTCCTAACTAT chr2D_1467 TGTTAGCTGACGTCCCCGATGATGTTGACATGGTTATTTTTCCTAACTAT chr6B_1467 TGTTAGCTGACGTCCCTGATGATGTTGACATGGTTATTTTTCCTAACTAT chr5B_1467 TGTTAGCTGACGTCCCCGATGATGTTGACATGGTTGTTTTTCCTAACTAT chr2A_1467 TGTTAGCTGACGTCCCCGATGATGTTGACATGGTTATTTTTCCTAACTAT chr7A_1467 TGTTAGCTGACGTCCCTGATGATGTTGACATGGTTATTTTTCCTAACTAT SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GTAAGTATGCTGCTGCTCCTAATTATGCCCGCCACACTTCTTATGCA--- chr1B_1_TraesCS1B01G002100 GTAAGTATGCTGCTGCTCCTAATTATGCCCGCCACACTTCTTATGCA--- chr1D_1 GTAAGTATGCTGCTGCTCCTAATTATGCCTGCCAGACTTCTTATGCATAC chrUn_527 GTAAGTATGCTGCTGCTCCTAATTATGCCTGCCAGACTTCTTATACATAC chr3D_1074 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chr6D_1084 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chrUn_1086 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chr4A_1086 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chr4B_1086 -------------------------------------------------- chr1D_1093 GTAAGTATACGCCTGCT--------------------------------- chr7D_1093 GTAAGTATACGCCTGCT--------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chr2D_1467 GTAAGTATACGGTGGTCCT--AATACACCTTCTGGACTTCTTATGCA--- chr6B_1467 GTAAGTATATGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chr5B_1467 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- chr2A_1467 GTAAGTATACGGTGGTCCT--AATACACCTACTGGACTTCTTATGCA--- chr7A_1467 GTAAGTATACGGTGGTCCT--AATACACCTGCTGGACTTCTTATGCA--- SNPs -----------------------------S----S--------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 --TAGTAATTGACTTGCATGTCTGCGCTCTGCAGGAAAGCAGCGTCGAGC chr1B_1_TraesCS1B01G002100 --TAGTAATTGACTTGCATGTCTGCGCTCTGCAGGAAAGCAGCGTCGAGC chr1D_1 AGTAGTAATTAACTTGCATGTCTGCACTCTGCAGGAAAGCAGCGTCGAGC chrUn_527 AGTAGTAATTAACTTGCTTGTCTGCACTCTGCAGGAAAGCAGCGTCGAGC chr3D_1074 --TAGTAATTAACTTGCATGTCTGCACTCTGCAGGAAAGCAGGGTCGAGC chr6D_1084 --TAGTAATTAACTTGCATGTCCGCACTCTGCAGGAAAGCAGCGTCGAGC chrUn_1086 --TAGTAATTAACTTGCATGTCTGCACTCTGCAGGAAAGCAGCGTCGAGT chr4A_1086 --TAGTAATTAACTTGCATGTCTGCACTCTGCAGGAAAGCATCGTCGAGT chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 --TAGTAATTAACTTGCATGTATGCACTCTACAGGAAAGCAGCGTCGAGC chr2D_1467 --TAGTAATTAACTTGCATGTCTGCACTCTGCAGGAAAGCAGCGTCGAGC chr6B_1467 --TAGTAATTAACTTGCATGTCTGCACTCTACAGGAAAGCAGCATCGAGC chr5B_1467 --TAGTAATTAACTTGCATGTCTGCACTCTACAGGAAAGCAGCGTCGAGC chr2A_1467 --TAGTAATTAACTTGCATGTCTGCACTCTGCAGGAAAGCAGCGTCGAGC chr7A_1467 --TAGTAATTAACTTGCATGTCTGCACTCTACAGGAAAGCAACGTCGAGC SNPs ----------S--------------S------------------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GTGACGATATAAAAGATCCATTCAGCGAGGTAAACATTCTCTGTCATTAA chr1B_1_TraesCS1B01G002100 GTGACGATATAAAAGATCCATTCAGCGAGGTAAACATTCTCTGTCATTAA chr1D_1 GTGATGATATAAAAGATCCATTTAGTGAGGTAAACATTCTCTGTTTTTAA chrUn_527 GTGATGATATAAAAGACCCATTCAGTGAGGTAAACCTTCTCTGTTTTTAA chr3D_1074 ATGATGATATAAAAGATCCATTCAGTGAGGTAAACCTTCTCTGTATTTAA chr6D_1084 GTGATGATATAAAAGATCCATTCAGTGAGGTAAACCTTCTCTGTATTTAA chrUn_1086 GTGATGATATAAAAGATCCACTCAGTGAGGTAAACCTTCTCTGTATTTAA chr4A_1086 GTGATGATATAAAAGATCCACTCAGTGAGGTAAACCTTCTCTGTATTTAA chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 GTGATGATATAAAAGATCCATTCAGTGAGGTAAACCTTCTCTGTATTTAA chr2D_1467 ATGATGATATAAAAGATCCATTCAGTGAGGTAAACCTTCTCTGTATTTAA chr6B_1467 GTGATGATATAAAAGATCCATTCAGTGAGGTAAACCTTCTCTGTATTTAA chr5B_1467 GTGATGATATAAAAGATCCATTCAGTGAGGTAAACCTTCTCTGCATTTAA chr2A_1467 GTGATGATATAGAAGATCCATTCAGTGAGGTAAACCTTCTCTGTATTTAG chr7A_1467 GTGATGATATAGAAGATCCATTCAGTGAGGTAAACCTTCTATGTATTTAG SNPs ----S--------------------S------------------SS---- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GAACATAATG---CCATCAAGTTCCGTTTTGATATAACGTTGGCTGATGG chr1B_1_TraesCS1B01G002100 GAACATAATG---CCATCAAGTTCCGTTTTGATATAACGTTGGCTGATGG chr1D_1 GAACATAATAATATCCACAAGCTCCG-TTTGATATAATGTTGGCTGATGT chrUn_527 GAATATAATAATATCCACAAGCTCCG-TTTGATATAATGTTGGCTGATGT chr3D_1074 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- chr6D_1084 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCAGATG- chrUn_1086 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- chr4A_1086 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 GAACATAATT---TCCTCAAGTTTCG-TTGGATATAATGTTGGCTGATG- chr2D_1467 GAACGTAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- chr6B_1467 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- chr5B_1467 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGTTGATG- chr2A_1467 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- chr7A_1467 GAACATAATT---TCCTCAAGTTCCG-TTGGATATAATGTTGGCTGATG- SNPs ---------S---S-S----------S----------S-----------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GATATGAATTCTGTTAGTTCGGTTACATCGAAA-------------GTCT chr1B_1_TraesCS1B01G002100 GATATGAATTCTGTTAGTTCGGTTACATCGAAA-------------GTCT chr1D_1 GATATGAATTCTGTTTGTTCGGTTACATCTAAAGTCTGATACTGTGGTCT chrUn_527 GATATGAATTCTGTTTGTTCGGTTACATCTAAAGTCTGATACTGTGGTCT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------------S-------------S-------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GATACTCTGATATTGTTGTTTACATAATTACATTTGCTTGGAAAATTTAG chr1B_1_TraesCS1B01G002100 GATACTCTGATATTGTTGTTTACATAATTACATTTGCTTGGAAAATTTAG chr1D_1 GATACTCTGATATTGTTGTTTACAT--------TTGCTTGGAAATTTAGT chrUn_527 GATACTCTGATATTGTTGTTTACAT--------TTGCTTGGAAATTTAGT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------SSSSSSSS-----------S--SSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -----------------------------------------------TAG forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TTTCGCGTTGCCCTGTAATCTGGTCCAACTTCCATTTAGCATAGTATCCT chr1B_1_TraesCS1B01G002100 TTTCGCGTTGCCCTGTAATCTGGTCCAACTTCCATTTAGCATAGTATCCT chr1D_1 TTTGTGC-TGCCCTGTAATCTGGTCCAATTTCGATTTAGCCTAGTATCC- chrUn_527 TTTGTGC-TGCCCTGTAATCTGGTCCAATTTCCATTTAGCCTAGTATCCT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---SSSSS--------------------S-----------S--------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 TTTCGCGTTGCCCTGTA--------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TGAATTAAGTTTTACCTGTTTTTCTTAGTGTAGACTATGA----GCCTAG chr1B_1_TraesCS1B01G002100 TGAATTAAGTTTTACCTGTTTTTCTTAGTGTAGACTATGA----GCCTAG chr1D_1 ----TTAAGTTTTACCTGTTTTTCTTAGTGTAGACTGGCCACGGGCCTAG chrUn_527 TGAATTAAGTTTTACCTGTTTTTCTTAGTGTAGACTGGCCACGGGCCTAG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------------------------------------SSSS---------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CTTATTTAGCAAATTATTGCAAAAGAAAAGG-----GAAGCGAATGAAAA chr1B_1_TraesCS1B01G002100 CTTATTTAGCAAATTATTGCAAAAGAAAAGG-----GAAGCGAATGAAAA chr1D_1 CTAATTTAGCAAATTATTCCAAAAGAAAAGA-----GAAGCAAATGAAAA chrUn_527 CTAATTTAGCAAATTATTCCAAAAGAAAAGAAAAGAGAAGCAAATGAAAA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S---------------S-----------S----------S-------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ATAATTTAAGGCCTCCGATATGTGCAACAATTCAGTTCTAACAACAGACT chr1B_1_TraesCS1B01G002100 ATAATTTAAGGCCTCCGATATGTGCAACAATTCAGTTCTAACAACAGACT chr1D_1 ATA-TCTTAGGCCTCCGATATGTGCAACAATTCAGTGCCAACAACAGATT chrUn_527 ATAATCTTAGGCCTCCGATATGTGCAACAATTCAGTGCCAACAACAGATT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----S-S----------------------------S-S---------S- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ATGCTTTTGGACATTCTTTGCTGTGTCTAGCC-TTTTTTTTTTCCAATAA chr1B_1_TraesCS1B01G002100 ATGCTTTTGGACATTCTTTGCTGTGTCTAGCC-TTTTTTTTTTCCAATAA chr1D_1 ATGCCTTTTGACATTTTTTGCTGTGTCTAGCC-TTTTTTTT---CAATAA chrUn_527 ATGCCTTTTGACATTCTTTGCTGTGTCTAGCCTTTTTTTTT---CAATAA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----S---S--------------------------------SSS------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ACTGTACTAGTATCTTGCCATCTTT--AGTATGAAAAAGATAATCTCATA chr1B_1_TraesCS1B01G002100 ACTGTACTAGTATCTTGCCATCTTT--AGTATGAAAAAGATAATCTCATA chr1D_1 ACTGTACTAGTATCTTGCCAT-TTTTTAGTATGAAAAAGATAATCTCATA chrUn_527 ACTGTACTAGTATCTTGCCAT-TTT--AGTATGAAAAAGATAATCTCATA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------------------S---------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TACAACTAGTGATCAATCATGGTTGTTATGTGGATACTTCACCAATTACC chr1B_1_TraesCS1B01G002100 TACAACTAGTGATCAATCATGGTTGTTATGTGGATACTTCACCAATTACC chr1D_1 TACAACTAGTGATCAATCATATACAACTAGCTAATTTATT---------- chrUn_527 TACAACTAGTGATCAATCATAGTTGTTATGTGGATACTTCACCAAGTACC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --------------------S------------------------S---- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ATGGGTTTCTTGCGTGCTCCAAACACCTAATCTCATCCTGA--------- chr1B_1_TraesCS1B01G002100 ATGGGTTTCTTGCGTGCTCCAAACACCTAATCTCATCCTGA--------- chr1D_1 -------------------------------------------------- chrUn_527 ATGAGTTCCTTGCATGTTCCAAACACCTATCCCATCATTAGCTAATTTTT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---S---S-----S--S------------SS-SSSSSS-SS--------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------GCAATATCTTACCAGGTGTCTATGTTCAAGAAGAATTATGATC chr1B_1_TraesCS1B01G002100 -------GCAATATCTTACCAGGTGTCTATGTTCAAGAAGAATTATGATC chr1D_1 -TACATTGCAATATCTTACCAGGTGTCTATGTTCAAGAAGAATTATGATC chrUn_527 GTACATTGCAATATCTTACCAGGTGTCTATGTTCAAGAAGAATTATGATC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ATCTCCCCAAAGATACTTACTTTGGCATGTATAAGGAAGCAACAAGGGGC chr1B_1_TraesCS1B01G002100 ATCTCCCCAAAGATACTTACTTTGGCATGTATAAGGAAGCAACAAGGGGC chr1D_1 ATCTCCCCAAAGATACTTACTTTGGCATGTATAAGGAAGCAACAAGAGGC chrUn_527 ATCTCCCCAAAGATACTTACTTTGGCATGTACAAGGAAGCAACAAGAGGC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----------------------------------------------S--- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AACCCTAACTATTTCATTACTTATGGGAATGGAAAATCTGCTGCACGAAT chr1B_1_TraesCS1B01G002100 AACCCTAACTATTTCATTACTTATGGGAATGGAAAATCTGCTGCACGAAT chr1D_1 AATCCCAACTATTTCATCACTTATGGGAATGGAAAATCTGCTGCGCGAAT chrUn_527 AATCCTAACTATTTCATTACTTATGGGAATGGAAAATCTGCTGCGCGAAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S-----------------------------------------S----- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TCAAGATCATCTCCGTCCAAATGGTGCGCACAGATGGCATAACTACGCAA chr1B_1_TraesCS1B01G002100 TCAAGATCATCTCCGTCCAAATGGTGCGCACAGATGGCATAACTACGCAA chr1D_1 TCAAGATCATCTCCGGCCAAATGGTGCACACAGATGGCATAACTACGCAA chrUn_527 TCAAGATCATCTCCGGCCAAATGGTGCACACAGATGGCATAACTACGCAA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------------S-----------S---------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGAGCCCAAAGTAAGGACCTTTGCCCATATTTTCCATTTTTTTCAGAACA chr1B_1_TraesCS1B01G002100 AGAGCCCAAAGTAAGGACCTTTGCCCATATTTTCCATTTTTTTCAGAACA chr1D_1 AGAGCCCAAAGTAAGGACCTTTGCCCATAGCATCCATTTTTTTCAGAACG chrUn_527 AGAGCCCAAAGTAAGGACTTTTGTCCATAGCATCCATTTTTTTCAGAACG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------------------SSS-----------------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 ----------------------------------------------AACA reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CCACACGTGAGTCTCCGAGTGGAG--TTGATTTTTACAATATTGTTGGCT chr1B_1_TraesCS1B01G002100 CCACACGTGAGTCTCCGAGTGGAG--TTGATTTTTACAATATTGTTGGCT chr1D_1 TAACTGACAGTGAGATCAAGCCGAAATTGATTCTTATAATATTGTTGGCA chrUn_527 TAACTGACAGTGAGATCAAGCCGAAATTGATTCTTATAATATTGTTGGCA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SS--SSSSSSSSSSSSS-SSSSSS--------S---S------------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 CCACACGTGAGTCTCC---------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CATAACTAACAGTGAGATCAAGCTGGAAGAGGCTGCAGTTCTGCACTATA chr1B_1_TraesCS1B01G002100 CATAACTAACAGTGAGATCAAGCTGGAAGAGGCTGCAGTTCTGCACTATA chr1D_1 TGTAACTGACAGTGAGATCAAGCTGGAAGAGGCTGCAGTTCTGCACTATA chrUn_527 TGTAACTGACAGTGAGATCAAGCTGGAAGAGGCTGCAGTTCTGCACTATA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SS-----S------------------------------------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CATACACCAAATTTTCGGACTTAACATCCAGACGTGATCGCTGTGGATGC chr1B_1_TraesCS1B01G002100 CATACACCAAATTTTCGGACTTAACATCCAGACGTGATCGCTGTGGATGC chr1D_1 CATACACCAAATTTTCAGACTTAACATCTAGACGTGATCGCTGTGGATGC chrUn_527 CATACACCAAATTTTCAGACTTAACATCTAGACGTGATCGCTGTGGATGC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----------------S-----------S--------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 ----------------------------CAGACGTGATCGCTGTGGAT-- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AAACCTACGAAAGAAGATGTTAAAAGATGTTTCATGTTGGATTTTGACAG chr1B_1_TraesCS1B01G002100 AAACCTACGAAAGAAGATGTTAAAAGATGTTTCATGTTGGATTTTGACAG chr1D_1 AAGCCTACAAAAGAAGATGTTAAAAGATGTTTCATGTTGGATTTTGACAG chrUn_527 AAGCCTACAAAAGAAGATGTTAAAAGATGTTTCATGTTGGATTTTGACAG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S-----S----------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGCAGTAAGTAAAGCTATTCATGTTAGTT--------------------- chr1B_1_TraesCS1B01G002100 AGCAGTAAGTAAAGCTATTCATGTTAGTT--------------------- chr1D_1 AGCAGTAAGTAAAGCTACTTGATTCTCTTGCAAGC--------------- chrUn_527 AGCAGTAAGTAAAGCTACTTGATTCTCTTGAAAGCTACTCCCTCCGTTCG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------S-SSSS-SSS----------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 -------------------------------------------------- chrUn_527 GAATTACTTGTCTCGGATATGGATGTATCTAGAACTAAAATACGTCTAGA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 ----------------------------------------TACTACCAGA chrUn_527 TACATCCATTTCTGCGACAAGTAATTCCGAACGGAGGGAGTACTACCAGA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------GAGTACTACCTTT chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -------------------------------------------------- chr1D_1 TTTTTGTTTGTCGATTTTTTTTTCCCATTGCACTAGTCCCTTTCCCCTCC chrUn_527 TTTTTGTTTGGTCGTTTTTTTT-CCCATTGCACTAGTCCCTTTCCCCTCC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 CCAATC-------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ----------------------------------------CTTCCTCTTG chr1B_1_TraesCS1B01G002100 ----------------------------------------CTTCCTCTTG chr1D_1 AGGATCTTTTGCATTTTACATTCTTATACTAGTGGTTCTGCTTCCTCTTC chrUn_527 AGGATCTTTTGCATTTTACATTCTTATACTAGTGGTTCTGCTTCCTCTTC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CATGATTTAGTTTGCTATTGTTTCTGCTACAATCTGACTTCCAA----CA chr1B_1_TraesCS1B01G002100 CATGATTTAGTTTGCTATTGTTTCTGCTACAATCTGACTTCCAA----CA chr1D_1 CATGATTTAGTTTGCTACTGCTGCTGCTACCCTGAGTTCTGACTTGAGCA chrUn_527 CATGATTTAGGTTGCTACTGCTGCTGCTACCCTGAGTTCTGACTTGAGCA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------S--S-S-------SS-SS-SSS-SSSS------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TTTACTATGCAGGCTTTTATAATTGCGTCAACTGCTAGTGAAGAGGATAT chr1B_1_TraesCS1B01G002100 TTTACTATGCAGGCTTTTATAATTGCGTCAACTGCTAGTGAAGAGGATAT chr1D_1 TTTACTATGCAGGCTTTTATAATTGCATCAACTGCTAGTGAAGAGGATAT chrUn_527 TTTACTATGCAGGCTTTTATAATTGCATCAACTGCTAGTGAAGAGGATAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --------------------------S----------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GCTTCGCTGGTAATTTTCATGGTCTCCTTCATATCATAAATTCTGTTCTA chr1B_1_TraesCS1B01G002100 GCTTCGCTGGTAATTTTCATGGTCTCCTTCATATCATAAATTCTGTTCTA chr1D_1 GCTTCGCTGGTAATTTTCATGGTCTCCTTAGTATCATAAATTCTGTTCTA chrUn_527 GCTTCGCTGGTAATTTTCATGGTTCCCACAGCACC----ATAATTTTCTA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------------------SS------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ACTTGACTCTATTAATCTAAGCCATCAAACAAAAACACTTTCTGATTTCT chr1B_1_TraesCS1B01G002100 ACTTGACTCTATTAATCTAAGCCATCAAACAAAAACACTTTCTGATTTCT chr1D_1 ACTTGGCTTAATTAATCTAAGCCATCAAACAAAAACACTTTCTGATTTCT chrUn_527 GCTTGACTGAAT------------------------ACTTTCTGATTTCT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --------SS---------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGAATGTGCCATCAATGATACTCTGACGGCAAATATACTGTCATGGACAT chr1B_1_TraesCS1B01G002100 AGAATGTGCCATCAATGATACTCTGACGGCAAATATACTGTCATGGACAT chr1D_1 AGCATGCACCATCAATGATACTCTGACGGAAAATATACTCTCCTGGACAT chrUn_527 AGCATGTACAATGAATAATATTCTGCTCGCAAATACATTGGTTTGGACAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S----S----------------------------------S------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TTACCCGTTCTCCAATTCTTCACTCTGACGCTAATATCTGTCATGA---- chr1B_1_TraesCS1B01G002100 TTACCCGTTCTCCAATTCTTCACTCTGACGCTAATATCTGTCATGA---- chr1D_1 TTACACGATCTCCAATTCTTCACTCTGACATTAATATCTGTCATGATCAT chrUn_527 TTACCCAGTCTCCAGTTTTCCACTCTGACGCTAATATCTATCATGA---- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------S------------------------------------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 --CCACGGACATATATTAATAAAGTATAGTTTGTAGTGAATTTGGTGATA chr1B_1_TraesCS1B01G002100 --CCACGGACATATATTAATAAAGTATAGTTTGTAGTGAATTTGGTGATA chr1D_1 GATCACAAACATATATTATGAAAGTATATTTTTTAGTAAATTTGGTCATA chrUn_527 --TCACAACCATATATGATGAAATTATATTTTGTACTGAATTTGGTGATA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S---SS----------SS--------S--------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CCAATTTCATATGG-CAATTTATTTTATTATTTATTCATGAGCAGAACTA chr1B_1_TraesCS1B01G002100 CCAATTTCATATGG-CAATTTATTTTATTATTTATTCATGAGCAGAACTA chr1D_1 CCAATTTCATGTGGCCAATTTAGTTTTTTATTGATTGATGAGCAAAACTA chrUn_527 CGAATTTTATATGGTGAATTTAGCATGAA--------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----------------------S---S-----S---S-------S----- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGATTTTTTTAATCATCGGGCACTCTTGAGGAGCATAATGCAACAAATCA chr1B_1_TraesCS1B01G002100 AGATTTTTTTAATCATCGGGCACTCTTGAGGAGCATAATGCAACAAATCA chr1D_1 AAATAAG-TTAATCAGCGGGCACTCTAA--GAGCATAAAGCAACAAATCA chrUn_527 -----------------------------------------AACAAGTCT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -S--SSSS-------S----------SSSS--------S----------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GGAATAGATAGCTACTGCTACCACCCCTTATAAAACGACTGGAATGGTCA chr1B_1_TraesCS1B01G002100 GGAATAGATAGCTACTGCTACCACCCCTTATAAAACGACTGGAATGGTCA chr1D_1 GGAAAAGATAGCTACTGCTACCGCCCCTGAGAAAACTGCAGGAATGGTCA chrUn_527 GGAGAAGATAGGTAAACGACAGGAGCT----------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----S-----------------S-----S-S-----SS-S---------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CGAAAATTTTGTTTTCTTTTGGCCAGACAGGCAATGATATATTTGAGCAT chr1B_1_TraesCS1B01G002100 CGAAAATTTTGTTTTCTTTTGGCCAGACAGGCAATGATATATTTGAGCAT chr1D_1 TGGAAATTTCGTTTTCTTTTTGCCAGATAGGTCATGATATATTTGACCGT chrUn_527 ------TTTTATTTTCTTTTGGCCAGATAGGTCATGATATATTCGACCAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs S-S------------------------S---SS-------------S--- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 T-TATCATAAATTCAACTAAAAG-ATGATCTATATCAGGGTAAACAAAGA chr1B_1_TraesCS1B01G002100 T-TATCATAAATTCAACTAAAAG-ATGATCTATATCAGGGTAAACAAAGA chr1D_1 G-TATCATAAATTCAACTAAAATAATGATCTTTGTCAGG-TAAACAAACA chrUn_527 GTTATCATAAATACAACTGATAACATGACCTATATCAGGATAACCCAAGA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs S---------------------S----------------S---------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AATCAGATTCCCATGAGT-------------------------------- chr1B_1_TraesCS1B01G002100 AATCAGATTCCCATGAGT-------------------------------- chr1D_1 ACTCAAATTTTTTCCGTGAGTTGTTCTCCAAGCACTCAGATCAGATGTAT chrUn_527 AATCAAATTGCCACGATTTGTTCTCC----AGCACTCAGATGTCTAAAAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----S---S---S--S--------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -----TTTATCAATTCACGCCGTAACATGAAAGTATTAGCTGACGTTAAT chr1B_1_TraesCS1B01G002100 -----TTTATCAATTCACGCCGTAACATGAAAGTATTAGCTGACGTTAAT chr1D_1 AATGATTTATCATTGCAGCCTGTAGCATGAAAGTACTAGCTGACGTTAAT chrUn_527 GATTC-------------CCTGTAGATTTAGAATACTAGCTGAACTCAAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ------------S-S--SS-S---S----------S-------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GATTCCCAGTTGGCCATTTATGTTTTCTTTTCAGAGATGTGGTATTCTCC chr1B_1_TraesCS1B01G002100 GATTCCCAGTTGGCCATTTATGTTTTCTTTTCAGAGATGTGGTATTCTCC chr1D_1 GATTCGCAGTTGGCCATTTATGCCTTTTTTTAAGAGATATGGTATTCTTC chrUn_527 GAGTCCCTGTAACAGTTT-------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----------------------SS--S----S------S---------S- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 GCAATAATCCTAGACATCCAACATCTTAGTATGACTGTTGACTGGCTGCT chr1B_1_TraesCS1B01G002100 GCAATAATCCTAGACATCCAACATCTTAGTATGACTGTTGACTGGCTGCT chr1D_1 GTAATGATCCTAGACATCCCACACC-TAGTATGACTGTTGGCTGATTGCT chrUn_527 ----------TAGACATCGGAGACC-TGGTATGCCTGTTGGCTGATTGCT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -S---S-------------S---S-S--------------S---SS---- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CTTGTGTCAGGTACAATGAACGCGTCGTGTGGAACGATAAGCAGCTCAAT chr1B_1_TraesCS1B01G002100 CTTGTGTCAGGTACAATGAACGCGTCGTGTGGAACGATAAGCAGCTCAAT chr1D_1 CTTTTGTCAGGTACAACGAACGTGTCGTGTGGAACGATAAGCAGCTCAAC chrUn_527 CTTTTGTTAGGTACAACGAACGTGTCGTGTGGAACGATAAGCAGCTCAAT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---S------------S-----S--------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CTGAAGCTTCTGCGAAAAGGAGTATTGACTCGCATCTATGCCCCAATGGT chr1B_1_TraesCS1B01G002100 CTGAAGCTTCTGCGAAAAGGAGTATTGACTCGCATCTATGCCCCAATGGT chr1D_1 CTGAAACTTCTGCGAAAAGGAGTGTTAACTCGCATCTATGCGCCAATGGT chrUn_527 CTGAAGCTTCTGCGAAAAGGAGTGTTAACTCGCATCTATGCCCCAATGGT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -----------------------S--S----------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ACGCAATAAATAACTATTAGCCACATTATCAAAATGTCAGTCATATGTAA chr1B_1_TraesCS1B01G002100 ACGCAATAAATAACTATTAGCCACATTATCAAAATGTCAGTCATATGTAA chr1D_1 ACGCAATAAGTAACCA-TAGCCACACCATCAAAATGTCAGTCATATGTAA chrUn_527 ATGCAGTAAATAACCA-TAGCCACACCATCAAAATGTCAGTCATATGTAA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --------------S-S--------SS----------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 TA---CAGTAATATTCATATACTTGACACGTGTGCCTTGTTCTGTCAGGC chr1B_1_TraesCS1B01G002100 TA---CAGTAATATTCATATACTTGACACGTGTGCCTTGTTCTGTCAGGC chr1D_1 TAATACAGTAATATTCATACGCTTGACACCTGTGCATTGTTCTATCAGGC chrUn_527 T--TACAGTAATATTCATACGCTTGACACTTGTGCCTTTTTCTATCAGGC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------SS--------S-------------S------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 ------------------------GACACGTGTGCCTTGTTCTG------ reverse_7702 -------------------------------------------------- input_sequence_18582 GATCGTGCAAGGCCTGCGGGAGTCTGGCGTCTTCACCTCCGTCATCGCAG chr1B_1_TraesCS1B01G002100 GATCGTGCAAGGCCTGCGGGAGTCTGGCGTCTTCACCTCCGTCATCGCAG chr1D_1 GATCGTGCAAGGCCTGCGGGAGTCTGGCGTCTTCACCTCTGTCATCGCAG chrUn_527 GATCGTGCAAGGCCTGCGGGAGTATGGCGTCTTCACCTCTGTCATTGCAG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 --------------------------------TCACCTCCGCCCTCTTCC chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CAGCGGTGGACAACGGCAAAGTTCAACTGAAAGAAAGCGTTGACAGAAAC chr1B_1_TraesCS1B01G002100 CAGCGGTGGACAACGGCAAAGTTCAACTGAAAGAAAGCGTTGACAGAAAC chr1D_1 CAGCCGTGGACAATGCTAAAGTTGGACAGAAGGAAAGCGTTGACCGAAAC chrUn_527 CAGCCGTGGACAATGCTAAAGTTCGACTGAAGGAAAGCGTTGACAGAAAC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 TCGCCGGTCGCCGGCCGATGTG---------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ----S--------S-SS-------S------S------------------ forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 ----GGTGGACAACGGCAAAGTTC-------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGGACCGGTTCTGACGACCCTGAAGATGGACCTAGGACAT---TCGTGGC chr1B_1_TraesCS1B01G002100 AGGACCGGTTCTGACGACCCTGAAGATGGACCTAGGACAT---TCGTGGC chr1D_1 AGCACCGATCAT---GACCATGAAGATGAGCCTAGGACATCATTCGTCGC chrUn_527 AGCACCGATCCT---GACCATGAAGATGGACCTAGGACAT---TCGTCGC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S----S-S--SSS----S---------------------------S-- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 AGCT---AACGCTCGGAAGATCTTGAGCGTCGTCGAGCCTGCCCCTGCCC chr1B_1_TraesCS1B01G002100 AGCT---AACGCTCGGAAGATCTTGAGCGTCGTCGAGCCTGCCCCTGCCC chr1D_1 AGCTAACAACGCTCGGAAGATCTTGAACGTCGTCGAGCCCGCCCCTGCCT chrUn_527 AGCT---AACGCTCGGAAGATCTTGAACGTCGTCGAGCCCGCCCCTGCCT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --------------------------S------------S---------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ACAGGGACAGGGATAGTGGCGCAT---CCGCTGTCCCCCCTTTGTCGCCC chr1B_1_TraesCS1B01G002100 ACAGGGACAGGGATAGTGGCGCAT---CCGCTGTCCCCCCTTTGTCGCCC chr1D_1 ACAGGGACAAGGACGGCGGCGCGTCCGCCGCTGTTCCCCCTTTGTCGCCC chrUn_527 ACAGGGATGGCGGCGGTGCA---TCCGCCGCTGTTCCCCCTTCGTCGCCC chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------------SS-------S-----------S--------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 CCGGGTTTGGATGACACGCGAGGGGAGGTGCTGGCTAGGTGA-------- chr1B_1_TraesCS1B01G002100 CCGGGTTTGGATGACACGCGAGGGGAGGTGCTGGCTAGGTGATGACTTGG chr1D_1 CCGGGTTTGGATGACGCGCGAGGGGAGGGGCTGGCTAGGTGGTGACTTGG chrUn_527 CCGGGTTTGGATGACGCACGAGGGGAGGGGCTGGCTAGGTGGTGACTTGG chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---------------S------------S------------S-------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ATCATCAGGATGAAAGAATTCTTTTTGCCCATGTAGGTTGGTCAGGTAGT chr1D_1 ATCG---GGATGAAAGAATTCTTTTTGCCCATGTAGGTTGGTCAGCTAGT chrUn_527 ATCG---GGATG-AAGAATTCTTTCTGCCCATATAGGTTGGTCAGGTAGT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---SSSS------------------------------------------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GAGAACAACATGATCATGGATGGGCCATCTAGGGTCAAA-------TATG chr1D_1 GACAAGAAGATGATCGTGGATGGATGGGCAGGCTAGCTAGTGACATGATT chrUn_527 GACAAGAAGATGATCGTGGATGGATGGGCAGT----CTAGTGAGATTATT chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs --S--S--S------S-------SSSSS-SS-SSSSSS-----------S forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTGATGATCAAAGGACA---TATGTTTTATCGAGGATATATGTAA----- chr1D_1 TTGGTGATCAAAGGACA---TATGTTATATCCAGAATATATATT------ chrUn_527 TTGGTGATCGAAGGACATAGTATGTTATATCGAGAATATATATATATGTA chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs ---S----------------------S-------S------S--S----- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 -TCATGGCTGGTCAATATATAGAGTGATTTTTGGCAGGGCA-------TA chr1D_1 TTCATGGTTGGTCAATATATAGAGTGATTTTGGGCAGGACATATATGCTA chrUn_527 TTCATAGTTGGTCAATACATAGAGTGATTTTGGGCAGGCCATA------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------S-----------------------S------S----------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTATGTGCACCCATTTTTTGTCAGTATTTAG-TAGTGCAAACAAGATGAT chr1D_1 GTATGTGCACCCATCTTTTTTTTAGTAAATGCTAGTGAAAAAAAGATGAT chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs S-------------S----S-SSSSSSSSS-------S---S-------- forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GCTACATATTATTTATATAGAAATTAAGAAACAGTAAGAGGGAACTTCCG chr1D_1 GCTACAT------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs -------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ATGAATTTTACAATAGATTTCTTCCTTTCCGCCACAACTATTTTTATTTT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TATTCTTTTTTTTAAGTTTACGAAAATCTTTTAAATTCTCCAATTTTTTT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TCAAAAAGCGTGAATTTTTTTCAAATGATGATTTTTTTTCAATATGTGAA chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 ATTCTTTTGTAAATTTTGGTTTTGTTTTTACAAATTGGTGAACATTCTCT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TAGACCATGTACTTTTTTTTTTTGAAACTGTGAACATTTTTTAACACTCA chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 CAAACAATTTTTTAAAATAGTGAACATTGCCTTAGCATAGTGGTAAAGCT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 GCTGCCTTGTGACCATGAGGTCATGGGTTCAAGTCCTGGAAACAGCCTCT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -CTGCCTTGTGACCATGAGGT----------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TATAGAAATATAGGGAAAGGCTGCGTACAATAGACCCAAAGTGGTCGGAC chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 CCTTCCCCAGACCCTGCGCAAGCGGGAGCTACATGCACTGGGGCTGCCCT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTAGTGAACATTCTCTTAAATCATGAGCATATTTTCGAATTCACAAACAT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTTCTTGAACTCATGAACATCTTTTTAAATCATGAACATTTTTAAAATTC chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 AAGACTAATTTTTGAAACAATGGACATTTTTTTACGAATTCGTGAACATT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TTCGAATTTGTGAACATTTTTCTGAAATCATAAACATTATTTTAAATTCA chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 -------------------------------------------------- chr1B_1_TraesCS1B01G002100 TGAATATTTTTAAATATGTGAATATTTTTTTTACAAATTCGTGAACATTT chr1D_1 -------------------------------------------------- chrUn_527 -------------------------------------------------- chr3D_1074 -------------------------------------------------- chr6D_1084 -------------------------------------------------- chrUn_1086 -------------------------------------------------- chr4A_1086 -------------------------------------------------- chr4B_1086 -------------------------------------------------- chr1D_1093 -------------------------------------------------- chr7D_1093 -------------------------------------------------- chr2D_1093 -------------------------------------------------- chr2D_1204 -------------------------------------------------- chr1B_1458 -------------------------------------------------- chr2D_1467 -------------------------------------------------- chr6B_1467 -------------------------------------------------- chr5B_1467 -------------------------------------------------- chr2A_1467 -------------------------------------------------- chr7A_1467 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_74 -------------------------------------------------- reverse_3175 -------------------------------------------------- forward_622 -------------------------------------------------- reverse_4698 -------------------------------------------------- forward_3932 -------------------------------------------------- reverse_5479 -------------------------------------------------- forward_5366 -------------------------------------------------- reverse_6855 -------------------------------------------------- forward_6794 -------------------------------------------------- reverse_7702 -------------------------------------------------- input_sequence_18582 ---------------- chr1B_1_TraesCS1B01G002100 TTTGAATTCCCGAGCA chr1D_1 ---------------- chrUn_527 ---------------- chr3D_1074 ---------------- chr6D_1084 ---------------- chrUn_1086 ---------------- chr4A_1086 ---------------- chr4B_1086 ---------------- chr1D_1093 ---------------- chr7D_1093 ---------------- chr2D_1093 ---------------- chr2D_1204 ---------------- chr1B_1458 ---------------- chr2D_1467 ---------------- chr6B_1467 ---------------- chr5B_1467 ---------------- chr2A_1467 ---------------- chr7A_1467 ---------------- SNPs SSSSSSSSSSSSSSSS forward_74 ---------------- reverse_3175 ---------------- forward_622 ---------------- reverse_4698 ---------------- forward_3932 ---------------- reverse_5479 ---------------- forward_5366 ---------------- reverse_6855 ---------------- forward_6794 ---------------- reverse_7702 ----------------