CLUSTAL X (1.81) multiple sequence alignment input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ATCACCCTTTTGGAATTGTATATCTAAATTAGATTGAATTCCAAGTCAGC chr2D_1 ATCACCCTTTTGGAATTGTATATCTAAATTTGGTTGAATTCCGAGTTAGC chr2A_1 ATCACCCTTTTGGAATTGTATA-CTAAATTTGATTCATTTTCAAGTCAGC SNPs ------------------------------S------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ATATCTATGGCATGAGTACCCGTCCTCTCAATATTGATATCCAATGGGGT chr2D_1 ACATCCATGGCACGAGTAGCCGTCCTCTCAATATTCATATCCGATGGGGG chr2A_1 ATATCTATGTCGTAAGTACCCATCCTCTCAATATTGATATCCGACGGGCT SNPs ------------------------------------------S------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GAGGTTCGACTTTGAGTCCGGTGCGAATCATTAGCATAACAGTTGTGATT chr2D_1 CGAGGA-GACTCTGAGTCTGGTGCGAATCATTAGCATAGAAGTCATGTTT chr2A_1 GAGGTTTGACTATGAGTCTGGTGCGTATCATTATCATAAAAGTTATGATT SNPs ------S----S------S--------------------S----S----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TTTCAGAAAAAACCCTCCAAATAGTTTGGTACATTGACACAAATTCATTT chr2D_1 TTTCAT---AAAACCTCCAAATGTTTTGGTAAATTAATACAAATTCATTT chr2A_1 TCTCAT--AAAAACCTCCAAA------GGTACATAGACACAAATTCATTG SNPs -----SSS----S---------SS-------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 AAAATTGTGGCTTCATGAAATCCAGTTATAAATCAAA------------- chr2D_1 AAAGTTGTGGCTTCGGGAAATTCAGTTATAGGTCAAACTTCTTGTTCTCG chr2A_1 AAAGTCGTGGCTTCATAAAATCCAGTTATAAATCAAACTTCTTGTTCTCC SNPs ---S---------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 TAATTTGCTCTTCAACGAGCCATCGAAAGATAGCAGGTGCGGGCGGGAAC chr2A_1 -------------------------------------------------- SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 TTTGTTAGCATCTTGTACCTCTACGGTATGGTTTTGGCCTCGATCCATAC chr2A_1 -------------------------------------------------- SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 CGTGAGTTAAACCTTTTAGCTGTGTCTCAGTGATCGCATCCTCAAGTAGA chr2A_1 -------------------------------------------------- SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 TTTTGAACATGGTAACACCATATCACTTTGGCATCAAATCACACACAGTG chr2A_1 -------------------------------------------------- SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 AAAAGTTACAATAGCTTAAGAGAATGCGTCATACCGACTGGAGTACGAAA chr2A_1 -------------------------------------------------- SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -----------------------------------------TCTTGTCAT chr2D_1 AGAACAGTCCAAAACATTTGGAAGCTATGATATCGACTTGTTCTCGTCAT chr2A_1 ----------------------------------------------TCAT SNPs --------------------------------------------S----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TCGCTCTCTAGTGAGCCAATGAAAGTCATCGGGTCGGTGGGAACTTTGAT chr2D_1 TCGCTCTCTAGCGAGCCATCAAAAGACTCCAGGTGGGCGGGAACTTCGGC chr2A_1 TCGCTCTCCAGCGAGCCATCAAAAGACACCAGGTGTGTGAGAACTTTGAT SNPs -----------S------SSS----S--S-S---S--------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ACCATGTTTGTGAC-TGCACAGTATGGTTGTGGGCGTGTGGCCTCCATCC chr2D_1 ACCGTCTTGTAACTATGCACAGTATGATTGC--------GGCCTCCATCC chr2A_1 ACCATCTTTGTGAC-TTCACAGTATGGCTGT--------GGTCCCCATCT SNPs -----S-------------------------SSSSSSSS----------- forward_637 -----------------CACAGTATGGTTGTGGGCGT------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ATGCCATGAGCTGAACCTTTCAGCTGCCACCTGAATTAGCCTAA-TCATT chr2D_1 ATGCCATGAGCTGAATCTTTCAACTACCACCTGAATTAGCCTCAGTCATT chr2A_1 ATGTCGTGAGCTGAACTATTTAGCCGCCTCCCAAATTAGCCTCGGTCATT SNPs ------------------------------------------S------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CCATGCTGAGGTAGTTTTTG-AACATGATAACAACATATTTAGTTTGCCA chr2D_1 GCATGCCGAAGTAGCTTTTG-AACATAGAAACACCATGTTTACCTTGCCA chr2A_1 GCATGCCGAGGTAGTTTTCGAAACATGGTAACACCCTATTTAGTTTGCCA SNPs S-----S--------------------S-----S---------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TCAAACCACACGCGGTAAAAAGTTTCAATAGCATAAGATAATGCATCGTA chr2D_1 TCAAATCACGTGCAGTAAAC-GTTTCAATGGCATAACTGAATGCATCATA chr2A_1 TCAAACCAAACGTGGTAAGAAGTTCCAATAGCATAAGAG-ATGCATCATA SNPs --------------------------------------S--------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CCAGCTGGAGTAAGAAAAGAACAGTCCAACGCATTCGGAACCTATGATGT chr2D_1 CCAGCTGGAGTAAGAAAAAAACAGTCCAACACATTCGGAAGCTACGATGT chr2A_1 CCAGCTGGAGTGAGAAAAGAACAGTCCAACACATTCGGAACCTATGATGT SNPs ------------------------------S------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TGACTTTTTGTCTACGCAAAATTTCCTGTCTCCAAGACATGGTAAATGTC chr2D_1 TGACTTCTTGTCTACACAAAA-TTCCTGTCTCTAAGATGAAATAACCGCC chr2A_1 CGACTTCTTGTCTACGCAAAA-TTCCTGCCTCCAAGACATGGTAAATGTC SNPs ------S--------------S---------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GACAAGTAAAGGCCCCACCATAACGTGGGACAAACATATAGCAACCGCAT chr2D_1 GAGAAGTAAAGGGCCCGCCGTAATCACGA--------------------- chr2A_1 GACAAGTAAAGGCCCCACCATAACGTAGGACAAATATGTAGAAACCGCAT SNPs --------------------------S-------S--S---S-------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 AA--CCAAGCATAGCAACTATAAATCCCTAGGAAAACTATATTTTACATT chr2D_1 AAAACCAAGTATGGCAATTATAAATCTCTTGCTGTACCCTACATTATA-- chr2A_1 AAAACCAAGCATATCAATTATAAATCTCTTGCTGTATTTTGCATGTACAC SNPs -----------------S--------S--S-SSSS---S--SS---S-SS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ACACTCCTTTA-----------------------------AAAATCTATT chr2D_1 ---------TA-----------------------------AAAATCGTTT chr2A_1 TATATAAAATCTCTTGCTGTATTTTGCATGTACACTATATAAAATCTCTT SNPs SSSS-SSSS--------------------------------------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GCTTGTTGGTTGCTTGGTGCAACAAGAA-TTTTGCTCCTAGAGAAGACCA chr2D_1 GCTTGTTGGTTGCTTGGTGCAACAAG-A-TTTTGCTCCTAGAGAAGACCA chr2A_1 GCTTGTTGGTTGCTTGGTGCAACAAG-AATTTTGCTCCTAGAGACGACCA SNPs --------------------------S----------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TTGGGCTCTGTTTTCTCGGTGGTGTGGTTGGGGTCGGACACTTGGACGAA chr2D_1 TCGGGCTCTGTTTTCTTGGTGGTGTAGTTGGGGTTGGACACTTGGAAGAA chr2A_1 TTGGGCTCTGTTTTCTTGGTGGTGTAGTTGGGGTTGGACACTTGGAAGAA SNPs ----------------S--------S--------S-----------S--- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CAAGAAAATCAATCAATCTGCCGCTCACCGCCGCCACCGCCAGCGTTGCA chr2D_1 CAAGAAAATCAATCAATCTGTCACTCACCGCCGCCAGCGCCAGCGCTGCA chr2A_1 CAAGAAAATCAATCAATCTGTCACTCACCGCCGCCAGCGTT-GCATCGCA SNPs --------------------S-S-------------S------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TGGTGGGGTCGTGGCCTGGACGGACCCTCCCAAGCCCCCCAAACCCTCTC chr2D_1 TCGTGGGCTCGTGGCCTGGGCGGACCCTCCCAAGCG--CCAAACCCTCTC chr2A_1 TCGTGGGCTCGTGGCCTAGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -S-----S-----------S---------------SSS------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CCCATCCGTCTTCCTCGTGCTCTCCGCCC--------------------- chr2D_1 CCCATCCGTCTTCCTCGTGCTCTCCGCCCC-------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 --------------------------------------------TCCCCT chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCT SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -CTCCCCTCCCCTCCCCTCCCCTCCTTATA--CGCCCCCGCCCCGAGCTC chr2D_1 TCTCCCCTCCCATCCTCTCCTCTCTTTATA--CGCCTCCGCCCCGAGCTC chr2A_1 TCTCCCCTCCCATCCCCACCTCTCTTTATACACGCCCCCGCCCCGAGCTC SNPs -----------S--------S---S------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------CGCCGCATTGCGTCGCGCACACG-------------- chr2B_1_TraesCS2B01G012500 TCCTCCCCCATTCCGCCGCATTGCGTCGCGCACACG-------------- chr2D_1 TCCTCCCCCATTCCGCCGCATTACGTCGCGCACACG-------------- chr2A_1 TCCTCCCCCATTCCGCCGCATTGCGCCAAGCACACAGGCAGAGCGGAACC SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -GGCAAGCGGGGACAGCCGGCAGCAGATCTTCCAGAC-AGAGGAGATGGC chr2B_1_TraesCS2B01G012500 -GGCAAGCGGGGACAGCCGGCAGCAGATCTTCCAGAC-AGAGGAGATGGC chr2D_1 -GGCA---GGGGAGAGCCGGCAGCGGAGAGAGAGCAGGAGACGAGATGGC chr2A_1 AGGCA---GGGGACAGCCGGCAGCAGATCGTCGAGAC-AGAGGAGATGGC SNPs -----SSS---------------------S--S----------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GGCCGCGTCCTTCACCGCCGCCAAGTTCCTGGCGCCGGCGGCGGCCAGAT chr2B_1_TraesCS2B01G012500 GGCCGCGTCCTTCACCGCCGCCAAGTTCCTGGCGCCGGCGGCGGCCAGAT chr2D_1 GGCCGCGTCCTTCACCGCCGCCAAGTTCCTGGCGCCGGCGGCCGCGAGAT chr2A_1 GGCCGCGTCCTTCACCGCCGCCAAGTTCTTGGCGCCGGTGGCCGCGAGAT SNPs ------------------------------------------S--S---- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CCGGCGGCGACCGGGCGCGGCCCTTCCCCGCGCCGTCCGCGTCCTCCATG chr2B_1_TraesCS2B01G012500 CCGGCGGCGACCGGGCGCGGCCCTTCCCCGCGCCGTCCGCGTCCTCCATG chr2D_1 CCGGCGGCGACCGGGCGC---CCTTCCCCGCGCCGTCCGCGTTCTCCATG chr2A_1 CCGGCGGCGACAGGGCGCGGCCCTCCCCCGCGCCGTCCGCGTTCGCCGTG SNPs ------------------------------------------S------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGCCCGCTCCGCCACAGGCCGGCCCGGCGCCTGGGCTCCGTCCTGGCCGT chr2B_1_TraesCS2B01G012500 CGCCCGCTCCGCCACAGGCCGGCCCGGCGCCTGGGCTCCGTCCTGGCCGT chr2D_1 CGCTCGCTCCGCCACAGGCCCGCCAGGCGCCTCAGCTCCGTCCTGGCCGT chr2A_1 CGCCCGCTCCGCCGCGGGCCCGCGCGCCGCCTCGGCTCCGTGATGGCCGT SNPs --------------------S-----------S----------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CTCCTCCGACGTGCTCAAGGCCGCGCCCGCCGCCGCCGCGTACCCGGTGA chr2B_1_TraesCS2B01G012500 CTCCTCCGACGTGCTCAAGGCCGCGCCCGCCGCCGCCGCGTACCCGGTGA chr2D_1 CTCCTCCGACGTGCTCAAGGCCGCGCCCGCCGCCGCCGCGTACCCGGTGA chr2A_1 CTCCTCCGACGTGCTCAAGGCCGCGCCCGCCGCCGCCGCGTATCCGGTGA SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GAATTCGCATCTCTCGTCTGTTCATCAGGGACCGTA------AAAAAAGT chr2B_1_TraesCS2B01G012500 GAATTCGCATCTCTCGTCTGTTCATCAGGGACCGTA------AAAAAAGT chr2D_1 GAATTCGCATCTCTCGTCTATTCACCTCTCCCT----AGTGTAAAAAAGT chr2A_1 GAATTCGCATCTCTCATCTATTCACCTCCCCAGAGCGAGTGTAAAAAA-- SNPs -------------------S----S-SSSSS-SSSS-------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TGCGATCTTGCAGTCCCG---ACTGTAAAAAATCGATCTTGGCTCGGGCC chr2B_1_TraesCS2B01G012500 TGCGATCTTGCAGTCCCG---ACTGTAAAAAATCGATCTTGGCTCGGGCC chr2D_1 TGCGATCTTGTAGCCCCTAGTAGTGTAAAAGTTCGATCTTGGCTTGGGCC chr2A_1 -GCGATCTTGCAGCCCCG---AGTGTAAAAATTGGATCTTGGCTTGGGCC SNPs -------------S--------S--------S------------S----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 ---------------------------------------------GGGCC reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GCTTTTCCTCTTCTACGTACGATTGGATCCCGGGAGCTGCCGTCTGTAGA chr2B_1_TraesCS2B01G012500 GCTTTTCCTCTTCTACGTACGATTGGATCCCGGGAGCTGCCGTCTGTAGA chr2D_1 GCGTTTACTGTTT----TACGATTGGATCCCGGGAGCTGCCGTCTGTAGA chr2A_1 GCGTTTACTGCTT----TACGATTGGATCCCGGTAGCTGCCGTCTTTAGA SNPs --S---S--S--SSSSS--------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 GCTTTTCCTCTTCTA----------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTCGTC-GAGCGTTCTAGATTTACTTACTGCATGACTCTGTTCTAGATAC chr2B_1_TraesCS2B01G012500 TTCGTC-GAGCGTTCTAGATTTACTTACTGCATGACTCTGTTCTAGATAC chr2D_1 TTCGTCTGAGTGTTCTAGATTTACTTGCTGCATGACTTAGTTCTAGATA- chr2A_1 TTCGTC-GAGTGTTCTAGATTTACTTACTGCATGACTTAGTTCTAGATA- SNPs ----------S--------------------------SS----------S forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TAGATTGGTTCAGATTAGCTCGCGTAATTTTCGTCCCCAAAGGTTGGACA chr2B_1_TraesCS2B01G012500 TAGATTGGTTCAGATTAGCTCGCGTAATTTTCGTCCCCAAAGGTTGGACA chr2D_1 --GATTGGTTCAGATTAGCTCGCATAATTTTCATCTCCAAAGGTTGGACA chr2A_1 --GATTGGTTCAGATTAGCTCGCATAATTTTCATCCCCAAAGGTTGGACA SNPs SS---------------------S--------S----------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GTAAGCAATTCGACTACCCAGATGCTAGTCAGTAGCGGCCTCCTGAATCT chr2B_1_TraesCS2B01G012500 GTAAGCAATTCGACTACCCAGATGCTAGTCAGTAGCGGCCTCCTGAATCT chr2D_1 GTAAGTAATTCGACTACCCAGATGCTAGTCAGTT---GCCTACTGAATCT chr2A_1 GTAAGTAATTCGACTACCCAGATGCTAGTCAGTA---GCCTACTGAATCT SNPs -----S----------------------------SSS----S-------- forward_637 -------------------------------------------------- reverse_2335 ----------------------------------GCGGCCTCCTGAATCT forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TGTATTGGGAATTCTCTTGTAATAATCTGGGCACAATCCCACGCTTGAAA chr2B_1_TraesCS2B01G012500 TGTATTGGGAATTCTCTTGTAATAATCTGGGCACAATCCCACGCTTGAAA chr2D_1 TGTATTGAGAATTCTCTTGTAAACTGAGCAC----ATCCCACGCCTGAAA chr2A_1 TGTATTGAGAATTCTCTTGTAATCTGAGCAC----ATCCCACGCTTGAAA SNPs -------S---------------SSSSSSSSSSSS--------------- forward_637 -------------------------------------------------- reverse_2335 TGTA---------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AGTTCACTTTAGGATTTGATTTGAAGGTGCTGCAAAAGCTCTCTCTCGAC chr2B_1_TraesCS2B01G012500 AGTTCACTTTAGGATTTGATTTGAAGGTGCTGCAAAAGCTCTCTCTCGAC chr2D_1 AGTTCACTTTAGGATTT-----GAAGGTGCTGCAAAAGCTCTCTCTCTAC chr2A_1 AGTTCACTTTAGGATTTGCAA-----GTGCTGCAAAAGTTCTCTGTCTAC SNPs ------------------SSSS-------------------------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 --------------------------------------------CTCGAC reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGATCCTCTCATGCCAACCTTGTTTTTAGTTTAAAACC-GATACTCGATA chr2B_1_TraesCS2B01G012500 CGATCCTCTCATGCCAACCTTGTTTTTAGTTTAAAACC-GATACTCGATA chr2D_1 TGATCCTCTCGTGTCAACCTTGTTTTTAGTTTAAAAACTGATACTCGTTA chr2A_1 TGATCCTCTCATGTCAACCTTGTTTTTAGTT-AAAAACTGGTACTCGTTA SNPs S------------S----------------------S----------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 CGATCCTCTCATGC------------------------------------ reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GCAAATTAAAATGTACCGCATCATATGATTTCAGAATTGGAGTACTGTTT chr2B_1_TraesCS2B01G012500 GCAAATTAAAATGTACCGCATCATATGATTTCAGAATTGGAGTACTGTTT chr2D_1 GCAAATTAAAATGTACTGTATCATGTAATTTCAGAATTGGGGTACTGTTT chr2A_1 GCAAATTAAAATGTACTGTATCATATAATTTCAGAATTGGAGTACTGTTT SNPs ----------------S-S-------S----------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AGTTCTTAGATCTAGCTTCAACTGTGGTAACTGCAGCGAGCCAGTGGTGC chr2B_1_TraesCS2B01G012500 AGTTCTTAGATCTAGCTTCAACTGTGGTAACTGCAGCGAGCCAGTGGTGC chr2D_1 AGTTCTTAGATCTAGCTTCAAGTGTGGTAACTGCAGTGAGCCAGTGATGC chr2A_1 AGTTCTTAGATCTAGCTTCCAGTGTGGTAACTGCAGTGAGCCAGTGATGC SNPs ---------------------S--------------S---------S--- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTGTATATGAAAATTTGAGAAAACTGAGGTTATAAATTGTTAAATCTTGG chr2B_1_TraesCS2B01G012500 TTGTATATGAAAATTTGAGAAAACTGAGGTTATAAATTGTTAAATCTTGG chr2D_1 TTGTATATGAGAAGTTGAG-GACCTGAGGTTATCAATTGTTAAATCTTGT chr2A_1 TTGTATATGAAAAGTTCAG-AACCTGAGGTTATCAATTCTTAAATCTTGG SNPs -------------S-----S--S----------S---------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AAGCTTTTTTCATGTTCTGCTTCTCTGTTTCCTTAATTTGAAGTGTATCG chr2B_1_TraesCS2B01G012500 AAGCTTTTTTCATGTTCTGCTTCTCTGTTTCCTTAATTTGAAGTGTATCG chr2D_1 AAACTTTTTTCATGTTCTGGTTCTCTG----------------------- chr2A_1 AGAC-TTTTTCATGTTCTGCTTCTCTGTTTCCTTAATTTGAAGTGTACCG SNPs --S--------------------------------------------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CCT----------------------------------------------- chr2B_1_TraesCS2B01G012500 CCT----------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 CTTTATGCAGGCAGTGACCCGGGAAGAGGCATTGTACCTTTGGTTCTCAA SNPs -S------------------------------------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 ---------------------------------------TTTTCCTAATT chr2A_1 TTGTTAAATCTTTGAAATTTTCAGTGTCCAGGCTCTCTGTTTTCCTAATT SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -----------------TATGCAGGCGGTGACCCGGGAAGAGGCGTTGGA chr2B_1_TraesCS2B01G012500 -----------------TATGCAGGCGGTGACCCGGGAAGAGGCGTTGGA chr2D_1 CAAAGTGTCTCACTGTATATGCAGGCTGTGACACGCGAAGAGGCATTGGA chr2A_1 CAAAGTGTCTCACTGTATATGCAGGCTGTCACACGCGAAGAGGCATTGGA SNPs --------------------------S-----S--S--------S----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GCTGTACGAGGACATGATCCTCGGCCGGAACTTCGAGGACATGTGCGCGC chr2B_1_TraesCS2B01G012500 GCTGTACGAGGACATGATCCTCGGCCGGAACTTCGAGGACATGTGCGCGC chr2D_1 GCTTTACGAGGACATGATCCTTGGCCGTAACTTCGAAGACATGTGCGCGC chr2A_1 GCTGTACGAGGACATGATCCTTGGCCGTAACTTCGAGGACATGTGCGCAC SNPs ---------------------S-----S---------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AAATGTACTACCGTGGCAAGATGTTTGGTTTCGTCCATCTTTACAACGGG chr2B_1_TraesCS2B01G012500 AAATGTACTACCGTGGCAAGATGTTTGGTTTCGTCCATCTTTACAACGGG chr2D_1 AAATGTACTACCGTGGCAAGATGTTTGGTTTCGTCCATCTTTACAACGGG chr2A_1 AAATGTACTACCGTGGCAAGATGTTTGGTTTCGTCCATCTTTACAACGGG SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CAGGAGGCCGTCTCCACCGGCTTCATCAAGCAGCTGAACCAACCTGACTG chr2B_1_TraesCS2B01G012500 CAGGAGGCCGTCTCCACCGGCTTCATCAAGCAGCTGAACCAACCTGACTG chr2D_1 CAGGAGGCCGTCTCCACCGGCTTCATCAAGCAGCTGAACCAACCCGACTG chr2A_1 CAGGAGGCCGTCTCCACCGGCTTCATCAAGCAGCTGAACCAACCCGACTG SNPs --------------------------------------------S----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TGTTGTTAGCACGTACCGTGACCACGTCCACGCGCTGTCCAAGGGTGTCC chr2B_1_TraesCS2B01G012500 TGTTGTTAGCACGTACCGTGACCACGTCCACGCGCTGTCCAAGGGTGTCC chr2D_1 TGTCGTCAGCACGTACCGTGACCACGTCCACGCGCTGTCCAAGGGTGTCC chr2A_1 TGTCGTCAGCACGTACCGTGACCACGTCCACGCGCTGTCCAAGGGTGTCC SNPs ---S--S------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGGCCCGTGCAGTCATGGCCGAGCTCTTTGGCAAGGCCACTGGCTGCTGC chr2B_1_TraesCS2B01G012500 CGGCCCGTGCAGTCATGGCCGAGCTCTTTGGCAAGGCCACTGGCTGCTGC chr2D_1 CGGCCCGTGCAGTCATGGCCGAGCTCTTTGGCAAGGCCACTGGCTGCTGC chr2A_1 CGGCCCGTGCAGTCATGGCCGAGCTCTTTGGCAAGGCCACTGGCTGCTGC SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGCGGACAGGGTGGTTCCATGCACATGTTCTCTGAGCCCCACAACCTCCT chr2B_1_TraesCS2B01G012500 CGCGGACAGGGTGGTTCCATGCACATGTTCTCTGAGCCCCACAACCTCCT chr2D_1 CGTGGACAGGGTGGTTCCATGCACATGTTCTCTGAACCCCACAACCTCCT chr2A_1 CGCGGACAGGGTGGTTCCATGCACATGTTCTCTGAACCCCACAACCTCCT SNPs -----------------------------------S-------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TGGAGGCTTTGCCTTCATTGGAGAGGGCATCCCTGTCGCCACTGGCGCTG chr2B_1_TraesCS2B01G012500 TGGAGGCTTTGCCTTCATTGGAGAGGGCATCCCTGTCGCCACTGGCGCTG chr2D_1 TGGAGGCTTTGCCTTCATTGGCGAGGGCATCCCTGTCGCCACTGGCGCTG chr2A_1 TGGAGGTTTTGCCTTCATTGGAGAGGGCATCCCTGTCGCCACTGGCGCCG SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CCTTTGCCGCCAAGTACCGCCATGAGGTGCTCAAGCAGTCTAGCCCTGAC chr2B_1_TraesCS2B01G012500 CCTTTGCCGCCAAGTACCGCCATGAGGTGCTCAAGCAGTCTAGCCCTGAC chr2D_1 CCTTTGCCGCCAAGTACCGCCATGAGGTGCTCAAGCAGTCTAGCCCTGAT chr2A_1 CCTTTGCCGCTAAGTACCGCCATGAGGTGCTCAAGCAGTCTAGCCCTGAC SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GGGCTTGATGTCACGCTTGCATTCTTTGGGGACGGTACCTGTAACAACGG chr2B_1_TraesCS2B01G012500 GGGCTTGATGTCACGCTTGCATTCTTTGGGGACGGTACCTGTAACAACGG chr2D_1 GGGCTTGATGTCACACTTGCATTCTTTGGGGACGGTACCTGTAACAACGG chr2A_1 GGGCTTGATGTCACGCTTGCATTCTTTGGGGACGGTACCTGTAACAACGG SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CCAGTTCTTTGAGTGCCTGAACATGGCTCAGCTGTGGAAGCTTCCGATTA chr2B_1_TraesCS2B01G012500 CCAGTTCTTTGAGTGCCTGAACATGGCTCAGCTGTGGAAGCTTCCGATTA chr2D_1 CCAGTTCTTTGAGTGCCTGAACATGGCTCAGCTGTGGAAGCTTCCGATTA chr2A_1 CCAGTTCTTTGAGTGCCTGAACATGGCTCAGCTGTGGAAGCTTCCGATTA SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTTTTGTTGTGGAGAACAACCTATGGGCAATCGGGATGTCTCACCTCAGG chr2B_1_TraesCS2B01G012500 TTTTTGTTGTGGAGAACAACCTATGGGCAATCGGGATGTCTCACCTCAGG chr2D_1 TTTTTGTTGTGGAGAACAACCTATGGGCAATCGGGATGTCTCACCTTAGG chr2A_1 TTTTTGTTGTGGAGAACAACCTATGGGCAATCGGGATGTCGCACCTGAGG SNPs ----------------------------------------------S--- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TCTACTTCAGATCCCGAGATCTGGAAGAAGGGCCCGGCATTCGGAATGCC chr2B_1_TraesCS2B01G012500 TCTACTTCAGATCCCGAGATCTGGAAGAAGGGCCCGGCATTCGGAATGCC chr2D_1 TCTACTTCAGATCCCGAGATCTGGAAGAAGGGCCCAGCATTCGGAATGCC chr2A_1 TCTACTTCAGATCCCGAGATCTGGAAGAAGGGCCCGGCATTCGGAATGCC SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TGGTGTACATGTCGATGGGATGGATGTCCTGAAGGTCAGGGAGGTGGCTA chr2B_1_TraesCS2B01G012500 TGGTGTACATGTCGATGGGATGGATGTCCTGAAGGTCAGGGAGGTGGCTA chr2D_1 TGGGGTACACGTCGATGGGATGGATGTCCTGAAGGTCAGGGAGGTGGCTA chr2A_1 TGGGGTACACGTCGATGGGATGGACGTCCTGAAGGTCAGGGAGGTGGCTA SNPs ---S-----S---------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AGGAGGCAATTGACAGGGCCAGGAGAGGTGAAGGACCAACTCTAGTGGAA chr2B_1_TraesCS2B01G012500 AGGAGGCAATTGACAGGGCCAGGAGAGGTGAAGGACCAACTCTAGTGGAA chr2D_1 AGGAGGCAATTGACAGGGCAAGGAGAGGTGAAGGACCAACTCTAGTGGAA chr2A_1 AGGAGGCAATTGACAGGGCAAGGAGAGGTGAAGGACCAACTCTAGTGGAG SNPs -------------------S------------------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TGTGAAACTTACCGGTTCAGAGGCCACTCTCTTGCTGATCCAGATGAACT chr2B_1_TraesCS2B01G012500 TGTGAAACTTACCGGTTCAGAGGCCACTCTCTTGCTGATCCAGATGAACT chr2D_1 TGTGAAACTTACCGGTTCAGAGGCCACTCTCTTGCTGATCCAGATGAACT chr2A_1 TGTGAAACTTACCGGTTCAGAGGCCACTCTCTTGCTGATCCAGATGAACT SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CAGGAGGCCTGGTAAGGATTACCTTTCTGGTTAATTTTTACTCCCTCCTT chr2B_1_TraesCS2B01G012500 CAGGAGGCCTGGTAAGGATTACCTTTCTGGTTAATTTTTACTCCCTCCTT chr2D_1 CAGGAGGCCCGGTAAGGATTACCTTTCTGGTTAAAATTTTCC-------- chr2A_1 CAGGAGGCCTGGTAAGGATTACCTTTCTGGTTAATTTTTA---------- SNPs -----------------------------------------SSSSSSSSS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CCCAAAATAAGTGACTCGACTTTGTATTAACTTTGTACTAAAGTTAGCAC chr2B_1_TraesCS2B01G012500 CCCAAAATAAGTGACTCGACTTTGTATTAACTTTGTACTAAAGTTAGCAC chr2D_1 -------------------------------------------------- chr2A_1 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AAAGTTGAGTCACTTGTTTTGGGACGGAGGGAGTACTTCACTTTTGTTCT chr2B_1_TraesCS2B01G012500 AAAGTTGAGTCACTTGTTTTGGGACGGAGGGAGTACTTCACTTTTGTTCT chr2D_1 -------------------------------------TCACTTTTATTCT chr2A_1 -----------------------------------CTTCACTTTTATTCT SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 ------------CTTGTTTTGGGACGGAGGGA------------------ reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AAGTAGTGGCACTGCTATCACTTTTAT----------------------- chr2B_1_TraesCS2B01G012500 AAGTAGTGGCACTGCTATCACTTTTAT----------------------- chr2D_1 AAGTAGTGGCACTGCTGGCATGAAATGACTGATTGACTGCTGGTGCCTAG chr2A_1 AAGTAGTGGCACTGCTGGCATGAAATGACTGATTGACTGCTGGTGCCTAG SNPs ----------------SS--SSSSSSS----------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GCTAACTGGAGAAATAGAAATTGCAAGAAAAGCATTTTAGTCATGAAGTT chr2B_1_TraesCS2B01G012500 GCTAACTGGAGAAATAGAAATTGCAAGAAAAGCATTTTAGTCATGAAGTT chr2D_1 GTTAACTGGAGAAATAGAAAATGCAAGAAAACCATTT-ATTCATGAAGTT chr2A_1 GCTAACTGCAGAAATAGAAAATGCAAGAAAACCATTTTATTCATGAAGTT SNPs --------------------S----------S-------S---------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TACAGTTCTGTTTAGACTGTTTGCCAAGTACCTGAACTGTAGTACTATAC chr2B_1_TraesCS2B01G012500 TACAGTTCTGTTTAGACTGTTTGCCAAGTACCTGAACTGTAGTACTATAC chr2D_1 TACGGATCTGTTTAGATTGGTTGCCTAGTGTCTGA--------ACTAAAG chr2A_1 TACGGATCTGTTTAGATTGGTTGCCTAGTGACTGAACTGAAGTACTATAT SNPs ---S-S----------S--S-----S---SS--------S---------S forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TACTCCCTCCGTCTGGAATTACTTGTCATAAAAATGGATAAAAATGGATG chr2B_1_TraesCS2B01G012500 TACTCCCTCCGTCTGGAATTACTTGTCATAAAAATGGATAAAAATGGATG chr2D_1 TACTCCCTCCGTTCCATAATTCTTGTCATGCAAATTTGAGCTAAAACCAC chr2A_1 ATACTAGT------------------------------------------ SNPs ------------SSSSS-S-S--------SS----SSSSSSS--SSSSSS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TATCTACAACTAGAATATGTCTAGATACAATCATTTCTCCGACAAGTATT chr2B_1_TraesCS2B01G012500 TATCTACAACTAGAATATGTCTAGATACAATCATTTCTCCGACAAGTATT chr2D_1 GACAATAATTATGGA----------------------------------- chr2A_1 -------------------------------------------------- SNPs S-SSSSS-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------T forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------T reverse_5891 -------------------------------------------------- input_sequence_18414 TTCGGACGGAGGGAGTACTATATACTACTCCCTCTGTCTCAGAATGTAAG chr2B_1_TraesCS2B01G012500 TTCGGACGGAGGGAGTACTATATACTACTCCCTCTGTCTCAGAATGTAAG chr2D_1 -------------------------------------------------- chr2A_1 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 TTCGGACGGAGGGAGTACT------------------------------- forward_2464 -------------------------------------------------- reverse_4001 TTCGGACGGAGGGAGTACTA------------------------------ forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 TTCGGACGGAGGGAGTACT------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 ACCTTTTCTGACACTGAACGTCTTACATTTTGAGACAGAGGGAGTACTAA chr2B_1_TraesCS2B01G012500 ACCTTTTCTGACACTGAACGTCTTACATTTTGAGACAGAGGGAGTACTAA chr2D_1 ----------------------------------ACGGAGGGAGTACTAA chr2A_1 ------------------------------------------AGTACTAA SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 ATTTCCTGAGTAATACATCACATACAATTTTGGTCATGCAAGATGTGCCA chr2B_1_TraesCS2B01G012500 ATTTCCTGAGTAATACATCACATACAATTTTGGTCATGCAAGATGTGCCA chr2D_1 ATTTCTTGAGTAATGCATCACATACAATTCTGCTCATCCAAGTTTTGCCA chr2A_1 ATTTCTTGAGTACAACACCACATACAATATTGCTCATGCAAGTTGTGCCA SNPs -----S--------------------------S---------S------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TCCTGTTTGGTTGCGAAATAAATGTGAAAGCTATATAGGGTTTTGTATGA chr2B_1_TraesCS2B01G012500 TCCTGTTTGGTTGCGAAATAAATGTGAAAGCTATATAGGGTTTTGTATGA chr2D_1 TCCTGTTTGGTGGCATCATAAATGCGAAAGCTATTTAGGATTTTATATGA chr2A_1 TCCTGTTTGGTGGCATCATAAACATGAGAGCTAC---------------- SNPs -----------S--SSS-----------------S----S----S----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TCACAGTTAGAAAGTAAAGTTTATGGTGCCAATTGAAATACTGAGCGAAA chr2B_1_TraesCS2B01G012500 TCACAGTTAGAAAGTAAAGTTTATGGTGCCAATTGAAATACTGAGCGAAA chr2D_1 TCACAAATAGGAAGTAAACCCTATGGTGCCAATTGAAATACCGAGCAAAA chr2A_1 ------ATAGGAAGTAAACTTTATGGTGCCAATTGAAATATTGAGCGAAA SNPs -----SS---S-------S------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TATTTCTTTTGTTCTTATCATCATCCCAGTCATCTTATCTGGTATGTCAC chr2B_1_TraesCS2B01G012500 TATTTCTTTTGTTCTTATCATCATCCCAGTCATCTTATCTGGTATGTCAC chr2D_1 TATTTCTTTTGTTCTTATCATCATCCCAGTCATCTTATCTAATATGTCAC chr2A_1 TATTTCCTTTGTTCTTATCATCATCCCAGTCATCTTATCTGACATGTCAC SNPs -----------------------------------------S-------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CTTCCTGATAGTGATAGGTATGACTAGATTGTCTCATAGTCAATTCACAG chr2B_1_TraesCS2B01G012500 CTTCCTGATAGTGATAGGTATGACTAGATTGTCTCATAGTCAATTCACAG chr2D_1 CATCC------TGATAGGTATGACTAGATTGTCTCATAGTCACTTCATAG chr2A_1 CATCC------TGATAGGTATGACTAGATTGTCTCATAGTAATTGCATAG SNPs -S---SSSSSS-------------------------------S----S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AATATTCAGCACCAC-TTGTTTTCTTTAAATAAACATGAATACAAACGGC chr2B_1_TraesCS2B01G012500 AATATTCAGCACCAC-TTGTTTTCTTTAAATAAACATGAATACAAACGGC chr2D_1 AATATTCAGGACCACTTTGTTTTCTTTAAATAAACCTGAACACAAACAGC chr2A_1 AGTATTCAGCACCAC-TTGTTTTCTTTAAATAAACCTGAATACAGACAGC SNPs -----------------------------------S-----------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AAAAATCCTCTCATATTAAC------------------------------ chr2B_1_TraesCS2B01G012500 AAAAATCCTCTCATATTAAC------------------------------ chr2D_1 AAAA-TCCTCCTATATTAGTAGTATTCAGCACCACTTGTTTTCTTCATAG chr2A_1 AAAA-TCCTCATATGTCAAC------------------------------ SNPs ----S-----SS-------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 ---------------------------CTTCA--TAAGAAGCAAATGCCT chr2B_1_TraesCS2B01G012500 ---------------------------CTTCA--TAAGAAGCAAATGCCT chr2D_1 AGTATTCAGTTCAGCCCCACTTGTTTTCTTCA--TAAGAAGAAACTGCCT chr2A_1 ---------------------------CTTCTAGTAATAAGCAAATGCCA SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTTTTTATTGCTTATTATTAGGGGACGTGCTTTAATGAACCTGACAGTAA chr2B_1_TraesCS2B01G012500 TTTTTTATTGCTTATTATTAGGGGACGTGCTTTAATGAACCTGACAGTAA chr2D_1 CTCCAT-TTTTTATTGCTTAGGGGATGTGCTTTAATGAACCTGATACTA- chr2A_1 TTCCG--TTTCTTTTGCTTATGGGATGTGCTTTAATGAACCTGATACTA- SNPs --SSS-S--S---S-SS--------S------------------S-S--S forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 ATTGACCCAGTCATCTTATCTGATATGTCACCATCCTGATAGGGTATTAC chr2B_1_TraesCS2B01G012500 ATTGACCCAGTCATCTTATCTGATATGTCACCATCCTGATAGGGTATTAC chr2D_1 ------------------------------------------GGTATTAC chr2A_1 ------------------------------------------GGTATTAC SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGGTTGTTGACCCATAGGGTCTCAT-----TATTTAAATTGACCCCTT-- chr2B_1_TraesCS2B01G012500 CGGTTGTTGACCCATAGGGTCTCAT-----TATTTAAATTGACCCCTT-- chr2D_1 CGGTTGTTGACTCATAGGATCTCAT-----TACTCAAATTGACCCACCTC chr2A_1 CGGTTGTTGACTCATAGGATCTTATATTAGTACTTAAATTGACCCACCTC SNPs -----------S------S-------------S------------SSS-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GTGTTTCTGTATCAAGTTGATAAATCTTAACAACTTGACAGTTGACATAC chr2B_1_TraesCS2B01G012500 GTGTTTCTGTATCAAGTTGATAAATCTTAACAACTTGACAGTTGACATAC chr2D_1 TTGTTCTTGTATCGAGTTGATAAACCTCAACAACATGACAGTTGACATAG chr2A_1 GTGTTTCCATATCTAGTTTGTAAACATTAACAACTTTACAGTT-ACATAC SNPs -------------S----------S------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AACTAATCTTAG--TTTTGTC-CCAGGATGTATGCCTTTTTATGCAGTTA chr2B_1_TraesCS2B01G012500 AACTAATCTTAG--TTTTGTC-CCAGGATGTATGCCTTTTTATGCAGTTA chr2D_1 AACCAATCATAATCTTTTGACACCAGGATGTATGCCTTTTTATGCAGTTA chr2A_1 AACCAATCATAATATTTTGTT-CCAGGATGTTTCCCTTTTTATGCAGTTA SNPs ---S----S--S-------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTATTCTCAAATCACTTTTACTCTGTTATTAGTCGTATCAGATAGATTTT chr2B_1_TraesCS2B01G012500 TTATTCTCAAATCACTTTTACTCTGTTATTAGTCGTATCAGATAGATTTT chr2D_1 TTCTC---AAACCATTTTTGCTCTGTCATTAACCGTATCAGATATATTTT chr2A_1 TTCTT---AAATCACGTTTGCTCTGTTCATAACTGTTTCAGATAGATTTT SNPs --S--SSS-----------S-----------SS----------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GAATCGTAAAGGTGGAAATATAAATTAGTTGGCTAA--GTTTGGATCTTA chr2B_1_TraesCS2B01G012500 GAATCGTAAAGGTGGAAATATAAATTAGTTGGCTAA--GTTTGGATCTTA chr2D_1 CAGTC--AAAGGTGGAAATATAAATTAGTTGGCTATACGTTTGGATCTTA chr2A_1 CGGTCATAAAGGTGGAAATATGAATTAGTTCGCTAA--GTTTGGATCTTA SNPs S-S--S-------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CATGACCTAGACCATATACTTGTTTACGTCTTCAAACCTGATTACTACTT chr2B_1_TraesCS2B01G012500 CATGACCTAGACCATATACTTGTTTACGTCTTCAAACCTGATTACTACTT chr2D_1 CATGACCTGGACCATATACTTGTTTACGTCTTCAA-CCTCATTACTATA- chr2A_1 CATGACCTAGACCATATACTTGTTTTCGTCTTCAA-CCTGATTACTATA- SNPs -----------------------------------S-----------SSS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTTTTTATGGTCTATGTATCTAACTTGGAAATTATCGCTATCTAGTAATC chr2B_1_TraesCS2B01G012500 TTTTTTATGGTCTATGTATCTAACTTGGAAATTATCGCTATCTAGTAATC chr2D_1 TTTTTCATGGTCTATGTATCTAACATGAAAACAACCACTCATT--TAATC chr2A_1 TTTTTCATGGTCTATGTATCTAACATGGAAACAACCACTCTTT--TAATC SNPs -----S------------------S------SS-S-S--S-S-SS----- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTGATTTGTGACTATTTTGTATCCAGTATCTCAGTGTATATCTGCATCCA chr2B_1_TraesCS2B01G012500 TTGATTTGTGACTATTTTGTATCCAGTATCTCAGTGTATATCTGCATCCA chr2D_1 TTGATTTGTCACTATTTTGTACTCTGCATTTCAGTGTATGTCTGCATCTG chr2A_1 TTGATTTGTGACTATTTTGTACTCTGCATTTCAGTGTATGTCTGCATCTG SNPs ---------------------SS-S-S--S---------S--------SS forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTCTCTTTTTCTCTAGT------------------GGCAAACTTAATTGT chr2B_1_TraesCS2B01G012500 TTCTCTTTTTCTCTAGT------------------GGCAAACTTAATTGT chr2D_1 TACTCTCTTCTCTACTGGATTGTATTACTTCTGACGGCATACTTGATTAT chr2A_1 TACTCTCTTCTCTACTGGATTGTATTACTTCTGACGGCATACTTGATTAT SNPs -S----S--SSSSSSSS----------------------S----S---S- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CAACTCTTGAAATTGTCAAGCTGCACATATTTCCTCTTTTTTTTTTTGCT chr2B_1_TraesCS2B01G012500 CAACTCTTGAAATTGTCAAGCTGCACATATTTCCTCTTTTTTTTTTTGCT chr2D_1 CAGCTCCTGC-ATTGTCAGGCTGCACAGATGTCCTCTTTTCTTTGCTAAT chr2A_1 CAGCTCCTGC-ATTGTCAGGCTGCACATACGTCCTCTTTTCTTTGCTAAT SNPs --S---S--SS-------S-----------S---------S---SS-SS- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AATGTGCTCTTTGACTCAATCATCTGATGACCTCGTGCACAGATGAGAAA chr2B_1_TraesCS2B01G012500 AATGTGCTCTTTGACTCAATCATCTGATGACCTCGTGCACAGATGAGAAA chr2D_1 GTTTGTG-CTCTGACTGAATCATCTGATGACCTCGTGCACAGATGAGAAA chr2A_1 GTTTGTG-CTCTGACTAAATCATCTGATGACCTCGTGCACAGATGAGAAA SNPs SS-SSSSS--S-----S--------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TCTCACTACGCTGCAAGGGACCCCATCACATCCCTAAAGAAGTACATCAT chr2B_1_TraesCS2B01G012500 TCTCACTACGCTGCAAGGGACCCCATCACATCCCTAAAGAAGTACATCAT chr2D_1 TCTCACTACGCCGCAAGGGACCCCATCACCTCCCTGAAGAAGTACATCAT chr2A_1 TCTCACTACGCTGCAAGGGACCCCATCACATCCTTGAAGAAGTACATCAT SNPs -----------------------------------S-------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGAGCAGAACCTCGCGTCCGAAGCCGAGCTGAAGAGCATCGAGAAGAAGA chr2B_1_TraesCS2B01G012500 CGAGCAGAACCTCGCGTCCGAAGCCGAGCTGAAGAGCATCGAGAAGAAGA chr2D_1 CGAGCAGAACCTCGCGTCCGAAGCCGAGCTGAAGAACATCGAGAAGAAGA chr2A_1 CGAGCAGAACCTCGCGTCTGAAGCGGAGCTGAAGAGCATTGAGAAGAAGA SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTGACGACGTCGTGGAAGAGGCCGTGGAGTTCGCTGACGCGAGCCCGCTC chr2B_1_TraesCS2B01G012500 TTGACGACGTCGTGGAAGAGGCCGTGGAGTTCGCTGACGCGAGCCCGCTC chr2D_1 TTGACGACGTCGTCGAAGAGGCTGTGGAGTTTGCCGACGCGAGCCCGCTG chr2A_1 TTGACGACGTCGTCGAAGAGGCTGTGGAGTTTGCCGACGCGAGCCCGCTG SNPs -------------S--------S--------S--S--------------S forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CCCCCACGGAGCCAGCTGCTGGAGAACGTGTTTGCCGATCCCAAGGGCTT chr2B_1_TraesCS2B01G012500 CCCCCACGGAGCCAGCTGCTGGAGAACGTGTTTGCCGATCCCAAGGGCTT chr2D_1 CCCCCACGGAGCCAGCTGCTGGAGAACGTGTTTGCCGATCCCAAGGGCTT chr2A_1 CCCCCACGGAGCCAGCTGCTGGAGAACGTGTTTGCCGATCCCAAGGGCTT SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 CGGCATAGGCCCCGACGGCAAGTACAGGTGCGAGGACCCGAAGTTCACGC chr2B_1_TraesCS2B01G012500 CGGCATAGGCCCCGACGGCAAGTACAGGTGCGAGGACCCGAAGTTCACGC chr2D_1 CGGCATCGGCCCCGACGGCAAGTACAGGTGCGAGGACCCCAAGTTCACCC chr2A_1 CGGCATCGGCCCCGACGGCAAGTACAGGTGCGAGGACCCCAAGTTCACTC SNPs ------S--------------------------------S--------S- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 ---------------------------------------GAAGTTCACGC forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AAGGCACAGCGCAAGTCTAAGGGCCGCTGCTGCAGAAGCAGCTTGTTTAC chr2B_1_TraesCS2B01G012500 AAGGCACAGCGCAAGTCTAAGGGCCGCTGCTGCAGAAGCAGCTTGTTTAC chr2D_1 AAGGCACGGCGCAAGTCTAAGGGCCGCTGCTGCAGAAGCAGCTTGTTTAC chr2A_1 AAGGCACGGCGCAAGTCTAAGGACCTCCACCGCAGAAGCAGCTTGTTTAC SNPs -------S------------------------------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 AAGGCACAG----------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GCCTTGTTTCTCATGCACTACCTCTCTAGCTACCCC--GCCCCTAGTTTT chr2B_1_TraesCS2B01G012500 GCCTTGTTTCTCATGCACTACCTCTCTAGCTACCCC--GCCCCTAGTTTT chr2D_1 GCCTCTTTTCTCATGTACTACCTCTCTAGCTACCT---GCCCCTAGTTTT chr2A_1 GCCTTGTTTCTCATGTACTACCTCTCTAGCTACCCTCAGCCCCTAGTTTT SNPs ---------------S-------------------S-------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 GTCGATCCCGCTGTCGATTTCTTGTGTTGTTAGAGGTCATCTATCACTGT chr2B_1_TraesCS2B01G012500 GTCGATCCCGCTGTCGATTTCTTGTGTTGTTAGAGGTCATCTATCACTGT chr2D_1 GTCGATCCCGCCGTCGATTTCTTGTGTTGTTAGAGGTCACATATCACTGT chr2A_1 GTCGAACCCGCTGTCGATTTCTTGTGTTGTTAGAGGTCATATATCACTGT SNPs ----------------------------------------S--------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 AATTCATTGCTCGCTGTGCTACCGCGCGGCGGCTGATGCCCCCAGTTTTT chr2B_1_TraesCS2B01G012500 AATTCATTGCTCGCTGTGCTACCGCGCGGCGGCTGATGCCCCCAGTTTTT chr2D_1 AATTCATTGCTCGCTGTGCCACCGTGCGGCGTCTGATGCCCCCAGTTTTT chr2A_1 AATTCATTGCTCGCTGTGCTACTGCGCGGCGTCTGATGCCCCCAGTTTTT SNPs -------------------------------S------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 TTTTACCCAAGAAAATGTTCACCAGTCC---------------------- chr2B_1_TraesCS2B01G012500 TTTTACCCAAGAAAATGTTCACCAGTCCAGTTGTTGTTCTACAGTAACTC chr2D_1 TTTACCCAAG--AAATGTTCCCCAGTCCAGTTGTTGTTCTACAGTAACTC chr2A_1 TTTACCCAAG--AAATGTTCCCCAGTTCA---GTTGTTCTACAGTAACTC SNPs ---SS--S-SSS--------S----------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TACATCTGTCTGGTTTGTAGTAATTGGTACAGATATTGGAAGAGATGTGA chr2D_1 TACATCTGTCTGGTTTGTAGTAATTGGTACAGATATTGGAAGAGATGTGA chr2A_1 AACATCTATCTGGTTTGTAGTAATTGGTACAGATATTGGAAGAGATGTGA SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 AACATGATAGTATCTGTTGAAACTGCTCTACTGGGTTTGTTTGGGAGATT chr2D_1 AACATAATAGTATCTGTTGAAACTGTTCTACTGGGTTTGTTTGGGAGATT chr2A_1 AACATAATAGTATCTGTTGAAACTGCTCTACTGGGTTTGTTTGCGAGATT SNPs -----S-------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CCTTTCCTCTGTTGAGCCTCAGCTCATAGCACAAGGCCACACCCTG--CT chr2D_1 CCTTTCCTCTGTCCAGCCTCAGCTCATAGCACAAGGCCACACCCTG--CT chr2A_1 CCTTTCCTCTGTTGAGCCTCAGCTCATAGCACAAGGCCACACACCCTTCT SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CACATGCCATATGATCTACAAGCACAAATAGGTATCAAA-CTCTTCACAT chr2D_1 CACATGCCATATGATCTACAAACACAAATAGGTATCAAAACTCTTCACAT chr2A_1 CACATGCCAGATGATCTACACACACAAATAGGTATCAAACACA---ACAT SNPs ---------------------S---------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 TGAAAATTCTGTTACATGTGCTGAATTTGTTATCTTTCTTCTCCGAGACC chr2D_1 TGAAACTTCTGTTATATGTGCTGAATTTGTTATCTTTCTTGTCCGAGACC chr2A_1 TGAAAATTCTGTTATATGTGCTGAATTTGTTATCTTTCTTGTCCAAGACC SNPs --------------S-------------------------S--------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 ----------------------------------------CTCCGAGACC input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CGACATCTTGTTGCG-----------------------GGTAACAAGAGG chr2D_1 CTACATCTTGCTGCG-----------------------GGTAACAAGAGG chr2A_1 CTAGATCATGTTGCGGCATCATGATCGCTCGCGGTCATGGTAACAAGAGG SNPs -S------------------------------------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 CGACATCTTG---------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GACTGACGTCGCCCCTATTGCACGTGGCCT-------------------- chr2D_1 GACCGACGTCGCCCCTATTGCACGTGGCCT-------------------- chr2A_1 GACTGACGTCGCCCTCACTGCACGCGACCTAATGCTGCTCAGGAATTGTA SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 ATTCGAACTGTACTATTTACTTGAGTCCTGATTGGAATGAAAGTTTGGCG SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 --------------------------------AATGCTGCTCCTCTCGAC chr2D_1 --------------------------------AATGCTGCTCCTCTCGAC chr2A_1 CCTTGAGCGCCTTCCCCCTTTTCTTAAAAAAAAATGCTGCCCCTCTCGAC SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GTCGCCGCCCCATTGCACGTGCCCTAACGCCGCTCCTCTCCTTGTGCCTG chr2D_1 GTCGCC---CCATTGCACGTGCCCTAACGCCGCTCCTCTCCTTGTGCCTG chr2A_1 GTCGCC---CCATCGCACGTGCCCTAACGCCGCTCCTCCCCTTGTGCCTG SNPs ------SSS----------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GAAGAGAAAATACCCAACTGATTGTGCACTTGGGACAGCTAGAAAGGTAA chr2D_1 AAGGAGAAAATACCCAACCGATTGT------------GCTAGAAAGGTGA chr2A_1 AAAGAGAAAATACCCAACTGATTGTGCACTTGAAACAGCTAGAAAGGTAA SNPs S-------------------------------SS---------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CTGGGTCCTGTCATCGTCCAACATGCCATTAGGGTGCGCAGATATCCCTA chr2D_1 CCGGGTCCTGTCATCGTCCAACATGCCATTAGGGTGTGCAAATATCCCTA chr2A_1 CCGGGTCCTGTCATCGTCCAACATGCCATTAGGGTGCGCAAATACCCNNN SNPs -S--------------------------------------S--------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ACTGATCCTGGCCATGCCATC-ACATGGCGCCTAACGCTCCCCTCTTTCG chr2D_1 ACTGATCTTGGCCATGCCATCAACATGGCGCCTAACGCTCCCCTCTTTCG chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------S------------------------------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GGTTACCCAGCACCGCG-CCCCCCCTTTCG-------------------- chr2D_1 GGTTACCCAGCACCGCGCCCCCCCCTTTCG-------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 -------------------------------------------------- chr2D_1 -------------------------------------------------- chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 ----------------------------------------------GTTT chr2D_1 ----------------------------------------------GTTT chr2A_1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTT SNPs -------------------------------------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CGGAAAGGGCCCATCGCCCC--------CCTTGGAGAAGACTACTTCGTG chr2D_1 CGGAAAGGGCCCATCGCCTTCCTTGG--------AGAAAACTATTTTGTG chr2A_1 CGGAAAGGGCCCATCGCCTTCCTTGGTTCCTTGGAGAAGACTACTTCGTG SNPs ------------------SS------------------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CGAGATGAGAACGGAAACGCGGATTGACTTGTCCGGGAAACCAGTTTTTA chr2D_1 TGAGATGAGAACGGAAACGCGGATTGACTTGTCGGGGAAACCAGTTTTCA chr2A_1 CGAGATGAGAACGGAAACGCGGATTGACTTGTCGGGGAAACCAGTTCTTA SNPs ---------------------------------S---------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GCATTGATTTGTGAGTGAGAGATAAGGTGGTGAGAATCATGGTGTGTCAA chr2D_1 GCATTGATTTGTGAGTGAGGGATAAGATGGTAAGAATCAAGGTGTGCCAA chr2A_1 GCATTGATTTGTGAGTGAGGGATAAGATGGTAAGAATCATGGTGTGTCAA SNPs -------------------S------S----S------------------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 GCAACGTTTATTCCCTCACTAGGATGGATGGCACCACCACTGCTTTGGCA chr2D_1 GCAACGTTTATTCCCTCACTAGGATG----GCACCACCACTGCTTTGGCA chr2A_1 GCAACGTTTATTCCCTCACTAGCATG----GCACCACCACTGCTTTGGCA SNPs --------------------------SSSS-------------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 AAGGGAAAAGGATGGACCAGGAAGCAGTTGAGA-GGAAGTGGAAAGGAAA chr2D_1 AAGGGAAAAGGATGGGCCAGCAGGCTGTTGAGAGGAAAGTGGAAAGGAAA chr2A_1 AAGGGAAAAGGATGGGCCAGCAAGCAGTTGGGA-GAAAGTGGAAAGGAAA SNPs ---------------S----S--------------S-------------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CAAGGAGAACACGGCAAGGACTATTCTCTCTCTCTTTCCTTTATCTTAGT chr2D_1 CAAGGAGAACACGGCAAGTACCATTCTCTCTCTCTTTCCTTCATCTTGGT chr2A_1 CAAGGAGAGCACGGCAAGTACTATTCTCTCCCTCTTTCCTTTATCTTGGT SNPs ------------------S----------------------------S-- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 CACATGTGTCATATTGATCTGG--------ATGTTTTTGGAGAGTGTTTA chr2D_1 CACATGTGTCATATTGATCTGGTGGCGGTGATGTTTCTGGAGAATGTTTA chr2A_1 CACATGTGTCATATTGATCTGGTGGTGGTGATGTTTTTGGAGAATGTTTA SNPs -------------------------------------------S------ forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 -------------------------------------------------- chr2B_1_TraesCS2B01G012500 AC--TTTTGTTATTTCTCGTGTTCCTTGTACTGCCACGACAGACGATGAA chr2D_1 TTTTTTTTGTTATTTCTCGTGTTGCTTGTACTGCCACGACAAACGATGAA chr2A_1 A--TTTTTGTTATTTCTCGTGTTGCTTGTACTGCCACGACAAACGATGAA SNPs -S---------------------S-----------------S-------- forward_637 -------------------------------------------------- reverse_2335 -------------------------------------------------- forward_2165 -------------------------------------------------- reverse_4000 -------------------------------------------------- forward_2464 -------------------------------------------------- reverse_4001 -------------------------------------------------- forward_3732 -------------------------------------------------- reverse_5390 -------------------------------------------------- forward_4019 -------------------------------------------------- reverse_5891 -------------------------------------------------- input_sequence_18414 ------------------------------------------- chr2B_1_TraesCS2B01G012500 TGGATTAGAAGTGTTTCCCGCATTTTTTCTTCTTCTTCTTCTC chr2D_1 TAGATTAGAAGTGTTTCCCGCAATTTTTTTTTCCTCTT----- chr2A_1 TAGATTAGAAGTGTTTCCCGCATTTTTTTTC------------ SNPs -S--------------------------S--SSSSS-SSSSSS forward_637 ------------------------------------------- reverse_2335 ------------------------------------------- forward_2165 ------------------------------------------- reverse_4000 ------------------------------------------- forward_2464 ------------------------------------------- reverse_4001 ------------------------------------------- forward_3732 ------------------------------------------- reverse_5390 ------------------------------------------- forward_4019 ------------------------------------------- reverse_5891 -------------------------------------------