>input_sequence_17911
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---------------------------------------------ATGTCGCAGAAGCGGCAGCCGGAGGAGGGCGAGCG
GCCGCGGTGGGGGGGCTGCGGCGGAG---GCCCGGCCGAGTCCGGCGGGAGCTCCTCCCCCGCTGAGCCCAAGCGGCAGC
GGGTCCCCGCCCTCCGCGAGTAAGCGTCCCGTCCCCTGT------CCCTTTTCCTGGCGGCCTCGATCGGAATCTCCACC
TCGGTTTCTCTGATTGGATTGGATTGGATTCGTTT-------GCAGGGTCATCACGGAGGTGATGCGGAAGAGCAGCATC
GAGAAGCTCTTCTCGTCGATCGAGCCCCTCATCCGGAGAGTGGTGAGCCGCCGTCCGTCTCGTGCACCTCGTTCCCGTGT
TTTCCCCGTCCCC-AATCCTCGTTTCCTTCAGCCGTATCACGACGAATTCGCAGGC--TGTGCTCCGTCTAATCCGCGTC
TCCTTTCTTTTCATTTCCTTGGGCCTAGG------------------------TATCTGAATTAACCTTAGTTTTTTTTT
TCAATTGGTGATCAGTATAACTGTCAGGAATCCATTTTCTACATCGCTTAGTTTA-GTCTTGAATATGT-AGAATCAGAA
ACTCCGCAGACCCACAAATTTGGACCGTGAGGTTACAACGAACCTTTAGGTATTGATTTAGGC-CAGGCGGTTCGTATTG
AGTAGATCTGAAATCGCACTTTTGACTACGCTCTTCATTGCAGCCATTCATCTGCAGAGTAGTGAGGAGT-CTATGCAAG
CTG--TCCCCCCCAATTTCCTTCAACCGTGCCAGAAAATTTTATA----------------ATCTGCATCTTCTATTCAT
TCCATTAGGCTTACGATTATGATGTGCTGGGTGACATGGTTTCTGAATTAAACTTAGCTTACTTAAATTGTTGATCAACA
TTGCTGCTGTCAGGAGTCCATCTTGTATTGG-TCCTGTATTTGTGTTAGTTTTGAAGAGTAAGGAATTATTAGTAACTCA
CAAATCTTTACTAAGAGATCACAATGACCTTGTAGGTATTAATTACTTTAGGAAAAGGGGTTCTTGTTCAAGAGTAGATC
TCAATCACAA-TTTTGGAAGCCACTGTATTGAATTAGTTTTTCTACCATTGTA---------------------------
--------------------------------------------------------TTGTTCTACATTCAGAACCATTGA
AACCCTGCGAAACTAGCAACGAAGCATTCATTCCAATGGACATTTTCTCATTCATTTTCAAAAGATAATATTAAATATTT
TCAGTCAAGGCTGTTGCTTGCATCATAAAGCTTGACCTAGTCAGTGCTGTTTTCAGCCATGTTTTTGTTTTAAGTTATTC
AGTGGTGATCTTGATGCTTAATTCGAGTCAAATTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCCGC
TATGATGACAAGGTACAGTATATGAACACTTCTTTGACAATTTTTGAAGTTCGTAAACTGATGCAGCTT-CATCTAACCA
CCTTG--TTT---TTTTGTT-CATTTTTCATTAGAAGTCCCACGTACACTGTTCCATCTACATCGAAAAATCTGCAGCTC
CAATTCACGACTAGGCTTTCTCTTCCAATTTTCACTGGCTCCAAGGTT--------------------------------
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-----------------GAAGGCGAGGGTACCTTAAGTATTGCTCTAGTCGACACTTTGACCAGAGAAGTTGTAGTGATG
GGTACGGAGTCCCGGTTGAAGGTTGAAATAGTAGTTCTAGAGGGTGACTTTGAG-------GACGGAGAAGGCAATGACT
GGACAGCTCAGGAGTTCAATAATAACATCGTTAAAGAAAGACAAGGTAAACGGCCCTTGCTTTCTGGAGACGTGTTTGTT
GGCCTTGATAAAGGCATTGGTACAGTGGGAGATGTAGCATTCACAGATAACTCCAGCTGGACACGCAGCCGAAAGTTCAG
G-----TTAGGTGCAAGAACTGAGGATGGTTG-------TTATAATGGCGTAAGAGTACGGGAAGCAAAAACTGAATCAT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTGATGCTGCTTTCAATTGTTATTTGTTTCTTGCACCCCTTCCTGCAC
ATTTGATAAGTTTCATCATTTTGGCACAGCGTCCTTA--------------------------------------AAATT
GACAACTGCACATAGAAATATAAGCACATGAATTCCTTGCTGCAATCTAGATTTGTTAGAACACAGTGCCCTTG------
---ATAGTCATAGTCACGTAAT----AAAAATTTGCTTT--CTCA--ATGCAAGGA-----TTTAGACCAACTTAGCTTA
CTCTTACTGCTAAT---GATTGACCTATGTCATTGCATCATCGTCTCAAATGCTACCAAATTGGGCAAATTTAAATGCCT
CACTTGTTATATTTTGTTCCCCTTTCCCAGTGTACAAGAAGCATCACCCACCAGTTCTTGAAGATGAGGTTTGGAGACTG
GAGAAGATCGGCAAGGAAGGAGCTTTTCACAAGCGTTTGAATAAGGAGAAGATAGTTACAGTCAAAGATTTTCTCACTTT
ATTGCATCTTGATGCTCCTAGGCTCCGGAAGGTACTATGCACCCTTTTGCAAGGTTTACAGAATTTGCTTATGTATTT--
----TATATTCTTTGTAGAGTTTATACAAGCTGTTGATGACTAG-TCCATTCTGTCCAAGGTTGACATGTATATTTATAT
CGAACATGTTTGACAGCATTATTTTGTAAATCTTTGAATTAAGAAAAACTGGAACCATCAAACTGCATATATGTGTAGGA
GTTCCTCATTTGGATGGATCAACTGCATTTTATCTATGGTAGTGTAAATGAGGTGTGGCATGTTGTTGCAGATGATAGTG
GTGTCTCAGAAAATATGTAGATTTCCTAACCAACTCTAATGTTAACATTGTGCAGATATTGGGCACTGGCATGTCAACTA
AGATGTG-------------------------------------------------------------------------
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-GGAGGTTACTATTGAGCATGCAAAAACAACATGTATTCTCAGTGACAAGGTGCATATTTACTATCTAGAAAGCCCAAGC
AAAACTGCTGTTGTGTTCAATGCTGTAGGGGAAGTGAGAGGGTTAATATCTGAGAAGTTTGTTTCTGTTGATGATCTGAC
AGAAAAGGAGAAGGTATTCACTTTTCTTCGTCGTATAAGCTCTTTAGATCAAATTCGTTTCCCCTT-CTACCAGTTGCAA
CCTAGACCATCTGGTCTTTACAGCATTTGTTCTTTCTAGGCTGAAGCAAATGCAGCTGTTAAACAAGCATTTGAAGACTG
GAAGAATGTCTCGACCTGCGACAATGAAACACTTTTGGAGAATCCGTCACAGCTCCTCAATATGAGATCCTCATCTTTGT
GTGAAAACGAATTTTTCCAGTTACCTGCACAAGTTGCCGCTGATGATTTTGATTTAAGCCACTTGGACATACCATCAGGC
GACATTTTCTCTGTCGAACCATTGTGTGCCTTGGATCCTTGTGCGGTGGGAGTTGTAGAGAGCAGTGAAAATAGATTTCA
GCCTGAGCTTCCCCCACTTGGTGGCCATGGACAGCCTCAAGAATCACTCGCTTTAGACAAGTTCTCGAATTCATTGGTTT
TTGAGGAGAGCACCAGTCACGCCTCGTTCAACGAAGAGGACTATTATTGCCGTCCAGGTCCAGACCCCCCGGTATCCTTT
GACTCACAAGATCTTGGGGCTGCGCTGAAGGGCTTCATTGCGACGATATCAAAGCCAAAGCCATATAGAGGATGGAGGAC
ATTGTCCTATGTTATAGGATGGATATTCTACACCAAGAGGATGGCCGCTCAGAAGAGGAAGAAACCCGGGAAATGA----
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--------------------------------------------
>chr5A_1_TraesCS5A01G486100
AATCCTGTTAGGTTGATATAATTGGTTATTAGACAAACTTTAACCCTATCAGGTTGATAATTGGACATTGGACAAACCTG
TGACGCGCCACATTTCCTAATCAGGGCTACGGACAAATGTTTGGTTTGTAGCCACACTTGAGCCCTGTTTGGATTATCGT
TTTCCTTTTAAACACCCTCGTAAGAAACACACATCTTGTCCCGTCG-TTTCATTTCCGATCGGAATTTCCTCAGTGGCCG
GTCCGATATACAACTCTAAATTAAACACCTCCTTATTAAACC-ACAACCATCCCAAGCGCGGCCTTAACCGAGTGTTAGG
CGCGCGGGTAAGCCGGTGTACAAGTGTTTTGTCGTAGCCACGTCTT----------------------------------
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-----------------------------------------------CTTAGTTGCTTACCCCATCTTATCAAAGACTCG
GTCGCTAGATCGCCTTTTGTCATAAGTGCGGCGACCAATTAAGCCACCACAAACTGTGGCATGGACGCAAAAGCGTTGCC
AAGTGTGGAATGCAACCAAACATGTCTGCTATTGCCGTATGCGCCTTTTCCCGT-TTTGCCAAGTGCTGTATGTGCCACC
CTCAAAAAGTACTGTGTCAACTCAAAACATAGAAAAGTA------CTGTGTGTGCTGGAGAAGTGTATGAGTTTTTTTTT
TTTGTTTTTGAGGGAGAGAAGTGTATGAGTTGCCTCATGTTTGGCACCGGAATTTGCCAAA-------------------
----CAGTGCCCATGTCTCGGTCGATCGGACGGACGGGACAAGTGGCCGAGCCGGAAGAAA-----------------AG
GATCCGACGCCGAAAATGCGCTTCGGGCCGGTAGGGT-GGGTAGGCCGGGTCGGTCTGTCTGTAGCCTGCCTTTTCCGGC
CCTGTGGGCCGAGTCACCCCGCAATTTGAGGCCATTTCCTATGCGGCTCCAACCGAACCAAACCCACCGTCCGTCCCGTC
CGTGCACCGTGGCCATCTGACCGAACCA------GTTCCCGTGCGGGCGGCGCGGCGCAGGGTTAGGTTGCGAC---CGG
CGGCGGCGATCG-------------------------GAGATCAGATGTCGCAGAAGCGGCAGCCGGAGGAGGGCGAGCG
GCCGCGGTGGGGGGGCTGCGGCGGAG---GCCCGGCCGAGTCCGGCGGGAGCTCCTCCCCCGCTGAGCCCAAGCGGCAGC
GGGTCCCCGCCCTCCGCGAGTAAGCGTCCCGTCCCCTGT------CCCTTTTCCTGGCGGCCTCGATCGGAATCTCCACC
TCGGTTTCTCTGATTGGATTGGATTGGATTCGTTT-------GCAGGGTCATCACGGAGGTGATGCGGAAGAGCAGCATC
GAGAAGCTCTTCTCGTCGATCGAGCCCCTCATCCGGAGAGTGGTGAGCCGCCGTCCGTCTCGTGCACCTCGTTCCCGTGT
TTTCCCCGTCCCC-AATCCTCGTTTCCTTCAGCCGTATCACGACGAATTCGCAGGC--TGTGCTCCGTCTAATCCGCGTC
TCCTTTCTTTTCATTTCCTTGGGCCTAGG------------------------TATCTGAATTAACCTTAGTTTTTTTTT
TCAATTGGTGATCAGTATAACTGTCAGGAATCCATTTTCTACATCGCTTAGTTTA-GTCTTGAATATGT-AGAATCAGAA
ACTCCGCAGACCCACAAATTTGGACCGTGAGGTTACAACGAACCTTTAGGTATTGATTTAGGC-CAGGCGGTTCGTATTG
AGTAGATCTGAAATCGCACTTTTGACTACGCTCTTCATTGCAGCCATTCATCTGCAGAGTAGTGAGGAGT-CTATGCAAG
CTG--TCCCCCCCAATTTCCTTCAACCGTGCCAGAAAATTTTATA----------------ATCTGCATCTTCTATTCAT
TCCATTAGGCTTACGATTATGATGTGCTGGGTGACATGGTTTCTGAATTAAACTTAGCTTACTTAAATTGTTGATCAACA
TTGCTGCTGTCAGGAGTCCATCTTGTATTGG-TCCTGTATTTGTGTTAGTTTTGAAGAGTAAGGAATTATTAGTAACTCA
CAAATCTTTACTAAGAGATCACAATGACCTTGTAGGTATTAATTACTTTAGGAAAAGGGGTTCTTGTTCAAGAGTAGATC
TCAATCACAA-TTTTGGAAGCCACTGTATTGAATTAGTTTTTCTACCATTGTA---------------------------
--------------------------------------------------------TTGTTCTACATTCAGAACCATTGA
AACCCTGCGAAACTAGCAACGAAGCATTCATTCCAATGGACATTTTCTCATTCATTTTCAAAAGATAATATTAAATATTT
TCAGTCAAGGCTGTTGCTTGCATCATAAAGCTTGACCTAGTCAGTGCTGTTTTCAGCCATGTTTTTGTTTTAAGTTATTC
AGTGGTGATCTTGATGCTTAATTCGAGTCAAATTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCCGC
TATGATGACAAGGTACAGTATATGAACACTTCTTTGACAATTTTTGAAGTTCGTAAACTGATGCAGCTT-CATCTAACCA
CCTTG--TTT---TTTTGTT-CATTTTTCATTAGAAGTCCCACGTACACTGTTCCATCTACATCGAAAAATCTGCAGCTC
CAATTCACGACTAGGCTTTCTCTTCCAATTTTCACTGGCTCCAAGGTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GAAGGCGAGGGTACCTTAAGTATTGCTCTAGTCGACACTTTGACCAGAGAAGTTGTAGTGATG
GGTACGGAGTCCCGGTTGAAGGTTGAAATAGTAGTTCTAGAGGGTGACTTTGAG-------GACGGAGAAGGCAATGACT
GGACAGCTCAGGAGTTCAATAATAACATCGTTAAAGAAAGACAAGGTAAACGGCCCTTGCTTTCTGGAGACGTGTTTGTT
GGCCTTGATAAAGGCATTGGTACAGTGGGAGATGTAGCATTCACAGATAACTCCAGCTGGACACGCAGCCGAAAGTTCAG
G-----TTAGGTGCAAGAACTGAGGATGGTTG-------TTATAATGGCGTAAGAGTACGGGAAGCAAAAACTGAATCAT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTGATGCTGCTTTCAATTGTTATTTGTTTCTTGCACCCCTTCCTGCAC
ATTTGATAAGTTTCATCATTTTGGCACAGCGTCCTTA--------------------------------------AAATT
GACAACTGCACATAGAAATATAAGCACATGAATTCCTTGCTGCAATCTAGATTTGTTAGAACACAGTGCCCTTG------
---ATAGTCATAGTCACGTAAT----AAAAATTTGCTTT--CTCA--ATGCAAGGA-----TTTAGACCAACTTAGCTTA
CTCTTACTGCTAAT---GATTGACCTATGTCATTGCATCATCGTCTCAAATGCTACCAAATTGGGCAAATTTAAATGCCT
CACTTGTTATATTTTGTTCCCCTTTCCCAGTGTACAAGAAGCATCACCCACCAGTTCTTGAAGATGAGGTTTGGAGACTG
GAGAAGATCGGCAAGGAAGGAGCTTTTCACAAGCGTTTGAATAAGGAGAAGATAGTTACAGTCAAAGATTTTCTCACTTT
ATTGCATCTTGATGCTCCTAGGCTCCGGAAGGTACTATGCACCCTTTTGCAAGGTTTACAGAATTTGCTTATGTATTT--
----TATATTCTTTGTAGAGTTTATACAAGCTGTTGATGACTAG-TCCATTCTGTCCAAGGTTGACATGTATATTTATAT
CGAACATGTTTGACAGCATTATTTTGTAAATCTTTGAATTAAGAAAAACTGGAACCATCAAACTGCATATATGTGTAGGA
GTTCCTCATTTGGATGGATCAACTGCATTTTATCTATGGTAGTGTAAATGAGGTGTGGCATGTTGTTGCAGATGATAGTG
GTGTCTCAGAAAATATGTAGATTTCCTAACCAACTCTAATGTTAACATTGTGCAGATATTGGGCACTGGCATGTCAACTA
AGATGTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGAGGTTACTATTGAGCATGCAAAAACAACATGTATTCTCAGTGACAAGGTGCATATTTACTATCTAGAAAGCCCAAGC
AAAACTGCTGTTGTGTTCAATGCTGTAGGGGAAGTGAGAGGGTTAATATCTGAGAAGTTTGTTTCTGTTGATGATCTGAC
AGAAAAGGAGAAGGTATTCACTTTTCTTCGTCGTATAAGCTCTTTAGATCAAATTCGTTTCCCCTT-CTACCAGTTGCAA
CCTAGACCATCTGGTCTTTACAGCATTTGTTCTTTCTAGGCTGAAGCAAATGCAGCTGTTAAACAAGCATTTGAAGACTG
GAAGAATGTCTCGACCTGCGACAATGAAACACTTTTGGAGAATCCGTCACAGCTCCTCAATATGAGATCCTCATCTTTGT
GTGAAAACGAATTTTTCCAGTTACCTGCACAAGTTGCCGCTGATGATTTTGATTTAAGCCACTTGGACATACCATCAGGC
GACATTTTCTCTGTCGAACCATTGTGTGCCTTGGATCCTTGTGCGGTGGGAGTTGTAGAGAGCAGTGAAAATAGATTTCA
GCCTGAGCTTCCCCCACTTGGTGGCCATGGACAGCCTCAAGAATCACTCGCTTTAGACAAGTTCTCGAATTCATTGGTTT
TTGAGGAGAGCACCAGTCACGCCTCGTTCAACGAAGAGGACTATTATTGCCGTCCAGGTCCAGACCCCCCGGTATCCTTT
GACTCACAAGATCTTGGGGCTGCGCTGAAGGGCTTCATTGCGACGATATCAAAGCCAAAGCCATATAGAGGATGGAGGAC
ATTGTCCTATGTTATAGGATGGATATTCTACACCAAGAGGATGGCCGCTCAGAAGAGGAAGAAACCCGGGAAATGATGAT
TTCCATTTGCCTGTGGTTGATTAGTTAAAA-AATTGTGAGATATAGAAGTGGACGAAAGGAAAGCATGTACAAATGAGTG
GTTGGTTACCTTTTGGATCTTTTATTTTTGGTCGCATGTTTTGCTGGTGTTCTCAAGCCGTTTTATCTGCGAGAGTGACA
CCTGTAAATAATCTGATGATTGTTTTGCTGGTGT-CTTGAGCCGTTTTATCAGCAAGAGTTCGCC---------------
-------------------------------------------------TGTAAATAATCAGATGAAGCTCTGTA-----
--------------------------------------------------------------CAGTACATAAATCCGTAA
ATATGAATGGTGGTGC-----------CTATCATCGGTGTGTTATTGGTAT---------------TTGTCAGGTTGGTC
TGTAACTTCGTTAGCACATCTTTTGTCGTATGACATTACATGCGCGCATGA--TGCCCAAGTATGAATGAAGTCTACAGG
TGCAGAACCAAAAGAATTGCGTTCTGCTGCCAAATTCAG-------ACTCCAAATGTTTGCTGGATCTGAAGTTGCAAAA
CAGCAACGGGCACTTCTATTGTGACGTATAATTCGGTTTTTTACCATGCAGTAAATGATTTTCGAGATGTTTAAACAAAA
AAGTGCCCGTGCCGTACATGATACTTCCTCGGTAACGTGATTTTCTGGCTGATTGCATGCACTCAGTGTACTCACCCGAG
TCCATGGCCCTGCCACTCCACCATGAATGGACCATACACACCCCATGGAAGAGATTAGCTCTCGTACCTCCATGACGAAG
TAGAAAGAGGAGAGGGAGGATAGCTAAGTTCATTCACTTGCAGTGTGCGTGTAGTTGAGTGTACGTTTCTTCCTGGTTCT
AAACATCAGGGCATCGCCGATCAAGTCTATTTTCCACGAACCCTTGAACCTTCTTCCTTCCTTTCATCTCTATTGGCACC
TGAAATCTCTTTGTTGGAGATCATCTCTGCCAACCAGGTCAACCATGAGCTCGCCGATCCGACATGCTTTGCCCTAGTCG
CTCCCACCTCCCCTTTGGTCTTGCCATGAGTTTAGCCAGTGCAG
>chr5D_1
AATCATGTTAGGTTGATATAATTGGTTTTCAGACAAAC-TTAAACCTATCAGGTTGATAATTGGTCATTGGAGGCGCACC
AAA--------ATTTCGTAGGCAGGGCTACGGACAA-TGTTTGGTTTGTAGCCACACTTGAGCCCTGTCTGGATTATCGT
TTTCTTTTTAAACACCCCCGTAAGAAATACACATCTTGTCCTGTCGTTTTTATTTCTGACTGGAATTTGCTCTGTGACCG
GTCCG--ATACAACTGTAAATTAAACACCTCCGTATCAAAATTACAACCATCCCAAGCGCGGCCTTGACCGAGTGTTAGG
CG----GGTAAGCCGGTGTAGAAGTGTTC---------------------------------------------------
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-------------------------------------------------------CTTACCCCATTTGT--C-AGACTTG
GTCGCTAGATCATCTTTTG--------------------TAAGCCGCCACAAACTGTGGCGCGGACGCAAAAGCATTGCC
AAGTGTGGAATGCAACCAAACATGTTTGCTATTGTTGTATGGGTCTTTTCCCGGATTTGCCAAGTACTGTATGTGCTAGT
CTGAAAAAGTACTGTATCAACTAAA-------AAAAGTA------GTGTATGTGCTGGAGAAGTGTATGGGT--------
------------------------------CGCCTCATGTTTGGCACCGGAATTTGCCAAAATATGACACTGCATGTATC
CAAACAGTGCCCATGTCTCGGTCGGTCGGGCGGACGTGACAAGTGGCCGAGCCGGAAGAAA-----------------A-
----------------TGTGCTTCGGGCCGGCAGGGTAGGGTAGGCCGGGTCGGTCTTTCTGTAGGCTACCTTTTCCGGC
CCTGTGGGCCGAGTCACCCCGCAATTTGAGGCCATTTCCTTTGCGACTCCAAGCGAGCCAAACCCA----CCGTCCCGTC
CGTGCACCGTGACCATCTGACCGAACCAGAAACAGTTCCCGTGCGGGCGGCGCGGCGCAGGGTTAGGTTGCGACCGGCGG
CGGCGGCGATCGAAGGTGGAGGTGGGGGATTTCGTCCGAGATCAGATGTCGCAGAAGCGGCAGCCGGAGGAGGGCGAGCG
GCCGCGCTGGGGAGGCTGCGGCGGCG---GCCCGGCCGAGTCGGGCGGGAGCTCCTCCCCCGGGGAGCCCAAGCGGCAGC
GGGTCCCCGCGCTCCGCGAGTAAGCGTCCCGCCCCCCCTTCCTCCCCCTTTCGTTCGCGCCCTCGATCGGAATCTCCACC
CCGGTTTCGCTGATTGGATTGGATTGGATTGGCCTCGCTCACGCAGGGTCATCACGGAGGTGATGCGGAAGAGCAGCATC
GAGAAGCTCTTCTCGTCGATCGAGCCCCTCATCCGGAGAGTGGTGA---GCCGTCCCTCTCGTGCACCTTGTTTCCGTGT
TCTCCCCGTC----------------------CCGTATCACGACAAATTCGCAGGG--TGTGCTCCGTCTAATCTGCGTC
TCCTTTCTTTTCATTTCCTTGGGCCTAGGATTATGACGCGTTTGGCCGCCTGGTATCTGAATTAACCTTAGTTTTC---T
TCAGTTGGTGATCAGTATACCTGTCAGGAATCCATTTTCTACATCACTTA-TTTTGGTCTTGAGTATGTAAGAATCAGGA
ACTCGGCAAATACACAAATTTGGACTGTGGGATTACAACGAACCTTTAGCTATTGATTTAGGAACAGGCGGTTCATATTG
AGTAGATCTGAAATTGCGCTTTTGAGAATGCTCTTCATGGCCCCTCGTCTGCAGAGGGTGAGGAGGCTAACCTATGCAAG
CTGTTTCTCCCCCCATTTTCTTCAACCGTGCCAGAAAATTTTATAGGATGTGCTCCTTTTAATCTGCATCTCCTTTTCAT
TTCATTAGGCTTACGATTATGATGTGCTGGGTAACATGGTTTCTGAATTAAACTTAGGTTACTTAAATTGATGATCAATA
TTGCTGCTGTCAGGAGTCCATCTTGTATTGGTAGCTGTGTTTGTATTAGTTTTGAAGACCAAGGAATTAGG---AACTCA
CAAATCTTCACCAAGAGATCTTGTAGTTAATTCATCAG---------TTAATTTAGGAGGGGGTTCTTGTTTAATAGATC
TCAATCACACTTTTGAGAGGTCACTGTAATGAATTAGTTTTTCTAGTATTGTACTCCCTCCGTCCCAAAATATAAGAACG
TTTTTTACACTATACTAGTGTCAAAAACGTTCTTATATTTTGGGACAGAGGGAGTATTGTTCTACATTCAGAACCATTCA
AGCCATGGAAGACTAAGCAACG---ATTCATTCATATGGACATTTTGTTATTCATTTTCAGAAGAT-------AATATTT
TCAGTCAAAGCTGTTGCTTGTGTCATAAAACTTGACCTAGCCAGTGCTGTTTTCAGCCATGTTTTCGTTTTAAGTTGTTC
AGTGGTGGCCTTGATGCTTAATTGAAGTCAATTTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCTGC
TATGATGACAAGGTATTGTATACGACACCT--TTTGACAAGTTTTTAGGTTCGTAAACTGATGCACCTTTTATCTAACCA
CATTG--TTT---TTTTCCTTTTAAATTCTTTAGAAGTCCGACATACACTGTTCCATCTACATCGAAAAACTTGCAGCTC
CAATTCACTACTAGGCTTTCTCTTCCAATTTTCACTGGCTCCAAGGTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GAAGGCGAGGGTACCTTAAGTATTGCTCTAGTTGACACTTTGACCAGAGAGGTTGTAGTAATG
GGTAAGGAGTCCCTGTTGAAGGTTGAAATTGTAGTTCTAGAGGGTGACTTTGAA-------GACGGAGAAGGCAATGACT
GGACAGCCCAGGAGTTCAATAATAACATCGTTAAAGAAAGACAAGGTAAACGGCCCTTGCTTTCTGGAGACGTGTTTGTT
GGCCTTGAAAGAGGCATTGGTACAGTGGGAGATGTATCATTCACAGATAACTCCAGCTGGACACGCAGCCGAAAGTTCAG
G-----TTAGGTGCAAGAACTGAGGATGGTTG-------TTATAATGGCGTAAGAGTCCGGGAAGCAAAGACGGAATCGT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTCATGCCGCTTTCAATTGTTATTTGTTTCTTGCACCCCTTCCTG---
-----------------------------------TA--------------------------------------AAATT
GACAACTGCACATAGAAATATAAGCACATGAATTCCTTGCTGCAATCTAGATTTGTTATAACACAGTATCTATG------
---ATAGTCATAGTCACGTAAT----AAAAATTTGCTTT--CAAGGCA----ATGA-----TTTTGACCAACTTAGTTTA
CTCTTACTGCTAAT---GATTGACCTATGTCATCGCTTCATCGTCTCAAATGCTACCAAATTGGACAAATTTAAATGCCT
CACTTGTTATATTTTGTTCCCCTTTCCCAGTGTACAAGAAGCATCACCCACCAGTTCTTGAAGATGAGGTTTGGAGACTG
GAGAAGATCGGCAAGGAAGGAGCTTTTCACAAGCGTTTGAATAAGGAGAAGATAGTTACAGTCAAAGATTTTCTCACTTT
ATTGCATCTTGATGCTCCTAGGCTCCGGAAGGTACTATGCACCCTTTTGCAAGGTTTGCAGAATTTGCTTATGTATTT--
----TATATTCTTTGTAGAGTTTATACAAGCTATTGATGACTAG-TCCATTCTGTCCAAGGTTGACATGTATATTTATAC
CGAACGTGTTTGACAGCATTATTTTGTAAATCTTTGAATTAGGAAAAACTGGAACCATCAAACTGCATATATGTGTAGGA
GTTCCTCAGTTGGATGGATCAACTGTATTTTATCTATGTTAGTGTAAATGAGGTGTGGCATGTTGTTGCAGATGATAGTG
GTGGCTCAGAAAATATTTAGATTTCCTAACCAACTCTAATGTTAACATTGTGCAGATATTGGGCACTGGCATGTCAACTA
AGATGTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGAGGTTACTATTGAGCATGCAAAAACAACATGTATTCTCAGTGACAAGGTGCATATTTACTATCTAGAAAGCCCAAGT
AAAACTGCTGTTGTGTTCAATGCTGTTGGAGAAGTGAGAGGGTTAATATCGGAGAAGTTTGTTTCTGTTGATGATCTAAC
AGAAAAGGAGAAGGTATTCACTTCTCTTCATCGTATAAGTTCTTTAGATCAAATTCATTTCCCCTTTGTACCAGTTGCAA
CCTAGACCATCTGTTCTTAACAGTATTTGTTCTTTCTAGGCTGAAGCAAATGCAGCTGTTAAACAAGCATTTGAAGACTG
GAAGAATGTCTCGACCTGCGATAGTGAAACACTTTTGGAAAATCCGTCACAGGTCCTCAATATGAGATCCTCGTCTTTGT
GTGAAAACGAATTTTTCCAGTTACCTGCACAAGTTGCCACTGATGATTTTGATTTAAGCCACTTGGACATACCATCAGAT
GATATTTTCTCTGTCGAACCATTGTGTGCCTTGGATCCTTGTGCGGTGGGAGCTGTAGAGAGCAGTGAAAATAGATTTCA
GCCTGAGCTTCCCCCACTTGGTGGCCATGGACAGCCTCAAGAATCACTCGCTTTAGACAAGTTCTCAAATTCATTGGTTT
TCGAGGAGAGCACCAGTCACGCCTCGTTCAACGAAGAAGACTATTATTGCCGTCCAGGTCCAGATCCCCCAGTATCCTTT
GACTCGCAAGATCTTGGGGCTGCACTGAAGGGCTTCATTGCGACGATATCAAAGCCAAAGCCATATAGAGGATGGAGGAC
ATTGTCCTATGTTATAGGATGGATATTCTACACCAGGAGGATGGCCGCTCAGAAGAGGAAGAAACCCAGGAAATGATGAT
TTTCATTTGCCTGTGGTTGATTAGTTAAAA-AATTGTGAGATATAGATGTGGAGGGAAGGCAAGCATGTACAAATGAGTG
GTTGGTTACCTTTTGGATCTTTTATTTTTGGTCGCATGTTTTGCTGGTGTTCTCAAGCCGTTTTATCTGCGCGAGTGACA
CCTGTAAATAATCAGATGATTGTTTTGCTGGTGT-CTTGAGCCGTTTTATCAGCGAGAGTTCGCC---------------
-------------------------------------------------TGTAAATAATCAGATGAAGCTCTGTA-----
--------------------------------------------------------------CAGTACATAAATCCGTAA
ATATGAATGATGGTGATATTG----------------------------TATGGGCGTGTTAGGTATTGTCAATATGGTC
TATAACTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr5B_247
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------ATACAAGTGTAAATTAAACACCTCCATATT-AAATTACAACCATCCCAAGCGCGGCCTTAACCGAGTGTTAGG
CG----GGTAAGCCAATGTACAAGCGTTTTGTTGGAGCCACGTCTTCTTAGGCTAGTCATAGTGGGAGTAACTTAGCAAG
TAACATAGTGCACTCCGAGAAATTTTTGCTTATGTGGCATGTGTTAATGAGAAGTGGTAACATAATATGTTACTGTAACA
TAGTGCTTTCCAAGACAAGATGAGTCTACAAGCTAATTTATGAAGTCCTCTATGACACTACTACTATGGGCATGCTTGGA
TCCAAGGGACTATTTTTAGTCTGACTAAAACTAGTCTCTTTTAGAGGCTAAAGTTCCAATCACCCCTGACTAAAGAGAGG
CTAGAACTAGTCTTGAGACTAACAAATTTTAGTCAGGGGAACCCTACTAAAATGTGGATTAGTCCTCTCTCTCCTCATTT
AACTCCCCTCCTTTAACATATGTGAGTTCTGGATTGGAGAGTTTGGAGGATAATAAATGCTCATTAACTCGATTTTAGTC
TATTTAGTATTTGTATCCAAGCATGGGTGAGACTAGCAAGTTTTAGTCCCACTACTTTTAGTCATGGGACTAAACCGTAT
CCAAGCACCCTCTATGTTACTTTGCACTATGAATGTAGTAACTTAGGGTATGTTTGGTTCTAGGCCTTGCATTGCCACAC
TTTACCACACATTTTTGCCAAGTTTGCCTAAGGTTAGTTCATCAAAATGAGAGTCACAAGTTGGCAAGCCTAAGAGAATC
TTGCCACATTTTTTGTGTGTATGCCATGTGGGGCCCTAGTGTGGCTTGCCTAAGGTGTGGCTTGAACCAAACACTCACCT
AAATTAGTCAAACTTGCCTAACCTTAGGTGTGGCAACCTTTGGCAAAGTTAGTCACAAACCAAACAATCCCTTAGACTAG
TGTCATATGCATGACACTAGTATAAATTACTCCACACTATGATCAGCCTTAGTTCCTTACTGCGTCTATCAC-AGACTCG
GTCGCTAGATCGCCTTTTGTCATAAGTGCGGCGACCAATTAAGCCATCACAAATTGTGGCAGGGACGCAAAAGCATTGCC
GAATGTAGAATGCAACCAAACATGTTTGCTGTTGTGATATGCGCCTTTTCCCAT-TTTGCCAAGTACTGTATGTGCTATC
CTCAAAAAGTACTGTATCAACTCAA-------AAAAAAAAGTACTGTGTATGCGCTGGAGAAGTGTATGGGT--------
------------------------------TGCCTCATGTTTGGCACCGGAATTTG-----------------------C
CAAACAGTGCCCATGTCTCGGTCGGTCGGACGGACGGGACAAGTGGCCGAGCCGGAAGAAACGGATCCGACGCCGAAGA-
----------------TGTGCTTCGGGCCGGCAGGGTAGGGTAGGCCGGGTCGGCCTTTCTGTAGCCTGCCTTTTCCGGC
CCTGTGGGCCGAGTCACCCCGCAATTTGAGGCCATTTTCTATGCGACCCCAACCGAACCAGGCCACCGTCGGGTCGCACT
GTGTGACGAGCGAACCAGGGGCGG---------------------------GCGGCGCAGGGTTAGGTTGCGACCGGCGG
CGGCGATCGGAGGCGGGG--------------CGTCGGAGATCAGATGTCGCAGAAGCGGCAGCCGGAGGAGGGCGAGCG
GCCGCGCTGGGGAGGCTGCGGCGGCGGCGGCCCGGCCGAGTCGGGCGGGAGCTCCTCCCCCGGGGAGCCCAAGCGGCAGC
GGGTCCCCGCCCTCCGCGAGTAAGCGTCCATCCCCTTCCCTTTCGCGA----CCTCGCGCTCTCGATTGGAGTC----CC
TCGGTTTCGCTGATTGGACTGCCTTCGTTTGG----------GCAGGGTCATCACGGAGGTGATGCGGAAGAGCAGCATC
GAGAAGCTCTTCTCGTCGATCGAGCCCCTCATCCGGAGAGTGGTGA---GCCGCCCGTCTCCTGTGCCTCGTTTCCGTGT
TTTTCCCCGTCCCAAATCCTCGTTTCCTTCCGCTGTATCACGACAAATTCGCAGGGCGTGTGCTCCGTCTGATCTGCGTC
TCCTCTCTTTTCATTTCCTTGGGCCTAGGATTATGACGCGTTTGGCCGCCTGGTATCTGAATTAA---------------
---------------TATAACTGCCAGGAATCCATTTTCTACATCGCTTA-TTGA-GTCTTGAGTATGCAAGAATCAGAG
ACTCCGCAGACCCGTAAATTTGGACTGTGGGATTACAACGAACCTTTAGGTATTGATTTAGGAACCGGCGGTTGATATTG
AGTAGATCTGAAATCGCACTTTTGAGAACGCTCTTCATGGCAGCCACT-ATCTGCAGAGTAGTGAGGAGC-CTACACAAG
CTGTTTCTCCCCCCATTTCCTTCAACCGTGCCACAAAATTTTGTAGGATGTGCTTCTTTTAATCTGCATCTCC-------
-----------TACAATTATGATGTGCTGGGTGACATGGTTTCTGAATTAAACTTAGGTTACTTAAATTGATGCTCAATA
TTGCTGCTGTCAGGAGTCCATCTTGTATTAGTTCCTGTATTTGCATCAGTTTTGAAGACCAAGGAATTAGG---AACTCA
GAAATCTTCACCAAGAGATATTGTAGTTAGTTCATCAA---------TTAATTTAAGAGGGGGTTCTTATTTAATAGATG
TCAATCATGCCTTTTAGAAGTCACT--AATGAATTAGTTTTCCTAGTACTGTA---------------------------
--------------------------------------------------------TTGTTCTACATTCAGAACCATTCA
GACCCTGGAAGACTAAGCAATG---ATTCATTCGTAT-GACATTTTGTTATTCATTTTCAGAAGAT-------AATATTT
TCAGCCAAAGCTGTTGCTTGCATCATAAAGCTTGACCTAGCCAGTTCTGTTTTCAGCCATGTTTTCGTTTTAAGTTGTTC
AGTGGTGGCCTTTATGCTTAATTGAAGTTAATTTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCTGC
TATGATGACAAGGTATTGTGCATGACACCT--TTTGACAAGTTTTTAGGTTCGTAAACTGATGCAGCTT-TATCTAACCA
CCTTG--TTT---T-----T-CCTTTTTCATTAGAAGTCCCACATACACCGTTCCATCTACATCGAAAAATTTGCAGCTC
CAATTCACAACTAGGCTTTCTCTTCCAATTTTTACTGGCTCCAAGGTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GAAGGCGAGGGTACCTTAAGTATTGCTCTAGTTGACACTTTGACCAGAGATGTTGTAGTAATG
GGCAAGGAGTCCCTGTTGAAGGTTGAAATTGTAGTTCTAGAGGGTGACTTTGAA-------GACGGAGAAGGCAATGACT
GGACAGTTCAGGAGTTCAATAATAACATCGTTAGAGAAAGACAAGGTAAACGGCCCTTGCTTTCTGGAGACGTGTTTGTT
GGCCTTGATAGAGGCATTGGTACAGTGGGAGATGTATCATTCACAGATAACTCCAGCTGGACACGCAGCCGAAAGTTCAG
G-----TTAGGTGCAAGAACTGAGGATGGTTG-------TTATAATGGCGTAAGAGTACGGGAAGCAAAAACTGAATCGT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTCATGCAGCTTTCAATTGTCATTAGTTTCTTGCACCCCTTCCTG---
-----------------------------------TGCATCTGATAAGTTTCATTATTTTAGCATAGCATCCTTTAAATT
GACAACTGCACATAGAAATATAAGCACATGAATTCCTTGCTGCAATCTAGATTTGTTAGAACACAGTATCTATG------
---ATAGTCATA-----GTAAT----AAAAATTTGCTTT--CAAGGCA----ATGA-----TTTTGACCAACTTAGTTTA
CTCTTACTGCTAAT---GATTGACCTATGTCATCGCTTCATCGTCTCAAATGCTACCAAAATGGACAAATTTAAATGCCT
CACTTGTTATATTTTGTTCCCCTTTCCCAGTGTACAAGAAGCATCACCCACCAGTTCTTGAAGATGAGGTTTGGAGACTG
GAGAAGATCGGCAAGGAAGGAGCTTTTCACAAGCGTTTGAATAAGGAGAAGATAGTTACAGTCAAAGATTTTCTCACTTT
ATTGCATCTTGATGCTCCTAGGCTTCGGAAGGTACTATGCACCCTTTTGCAAGGTTTACAGAATTTGCTTATGTATTCTA
TTTCTATACTCTTTGTAGAGTTTATACAAGCTGTTGATGACTAGTTCCATTCTGTCCAAGGTTGACATGTATATTTATAC
CGAACGTGTTAGACAGCATTATTTTGTAAATCATTGAATTAGGAAAAACTGGAACCATCAAACTGCAT-TATGTGTAGGA
GTTCCTCATTTGGATGGATCAACTGTATTTTATCTATGGTAGTGTAAATGAGGTGTGGCATGTTGTTGCAGATGATAGTG
GTGGCTCAAAAAATATGTAGATTTCCTAACCAACTCTAATGTTAACATTGTGCAGATATTGGGCACTGGCATGTCAACTA
AGATGTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGAGGTTACTATTGAGCATGCAAAAACAACATGTATTCTCAGTGACAAGTTGCATATTTACTATCTAGAAAGCCCAAGT
AAAACTGCTGTTGTGTTCAATGCTGTTGGAGAAGTGAGAGGGTTAATATCGGAGAAGTTTGTTTCTGTTGATGATCTAAC
AGAAAAGGAGAAGGTATTCACTTTTCTTCGTCGTATAAGTTCTTTAGATCAAATTCATTTCCCCTTTGTACCAGTTGCAA
CCTAGACCATCTGGTCTT-ACAGTATTTGTTCTTTCTAGGCTGAAGCAAATGCAGCTGTTAAACAAGCATTTGAAGACTG
GAAGAATGTCTTCACCTGCGACAGTGAAACACTTTTGAAAAATCCATCACAGGTCCTCAATATGAGATCCTCGTCTTTTT
GTGAAAACGAAATTTTCCAGTTACCTGCACAAGTTGCCACAGATGATTTTGATTTAAGCCACTTGGACATACCATCAGAT
GATATTTTCTCTGTCGAACCATTGTGTGCCTTGGATCCTTGTGCGGTGGGAGCTGTAGAGAGCAGTGAAAATAGATTTCA
GCCTGAGCTTCCCCCACTTGGTGGCCATGGACAGCCTCAAGAATCACTTGCTTTAGACAAGTTCTCAAATTCATTGGTTT
TTGAGGAGAGCACCAGTCACGCCTCGTTCAACGAAGAAGACTACTATTGCCGTCCAGGTCCAGATCCCCAGGTATCCTTT
GACTCACAGGATCTTGGGGCTGCGCTGAAGGGCTTCATTGCGACGATATCAAAGCCAAAGCCATATAGAGGATGGAGGAC
ATTGTCCTATGTTATAGGATGGATATTCTACACCAAGAGGATGGCCGCTCAGAAGAGGAAGAAACCCGGGAAATGATGAT
TTTCATTTGCCTGTGGTTGATTAGTTAAAAAAATTGTGAGATATAGAATTGGAGGAAAGGAAAGCATGTACAAATGAGTG
GTTGGTTACCCTTTGGATCTTTTATTTTTGGTCGCATGTTCTGCTGGTGTTCTCGAGCCGTTTTATCTGCGAGAGCGACA
CCTGTAAATAATCAGATGATTGTTTTGCTGGTGT-CTTGAGCCGTTTTATCAGCGATAGTTCGCC---------------
-------------------------------------------------TGTAAATAATCAGATGAAGCTCTGTA-----
--------------------------------------------------------------CAGTACATAAATCCGTAA
ATATGAATGATGGTG-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr1D_2001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------GAGTAGATC
TCAATCATGCTTTTTAGAAGTCACTGTAATGAATTAGTTTTTCTAGTATTGTA---------------------------
--------------------------------------------------------TTGTTCTACATTCAGAACCATTCA
ATCCCTGGAAGACTAAGCAACA---ATTCATTCATATGGACATTTTGCTGTTCATTTTCAGAAGAT-------AATATTT
TCAGCCAAAGCTGTTACTTGCATCATAAAGCTTGACCTAATCAGTGCTGTTTTCAGCCATGTTTTCGTTTTAAGTTGTTC
AGTGGTGGCCTTGATGCTTAATTGAAGCCAATTTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCTGC
TATGATGACAAGGTATTGTATATGACACCT--TTTGACAAGCTTTTAGGTTTGTAAACTGATGCAGATT-TATCTAACCA
CCTAGTTTTT---T-----TTCCTTTTTCATTAGAAGTTCCACATACACTGTTCCATCGACATCGAAAAATTTGCAGCTC
CAATTCATGACTAGGCTTTCTCTTCCAATTTTCACTGGCTCCAAGGTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GAAGGCGAGGGTACCTTAAGTATTGCTCTAGTTGACACTTTGACCAGAGAGGTTGTAGTAATG
GGTAAGGAGTCCCTGTTGAAGGTTGAAATTGTAGTTCTAGAGGGTGACTTTGAACTTTGAAGACGGAGAAGGCAATGACT
GGACAGCTCAGGAGTTCAATATTAACATCATTAGAGAAAGACAAGGTAAACGGCCCTTGCTTTCTGGAGATGTGTTTGTT
GGTCTTGATAGAGGCATTGGTAGAGTGGGAGATGTATCATTCACAGATAACTCCAGCTGGACACGCAGCCGAAAGTTCAG
G-----TTGGGTGCAAGAACTGAGGATGGTTG-------TTATAATGGCGTAAGAGTACGGGAAGCAAAAACTGAATCAT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTCATGCCGCTTTCAATTGTTATTTGTTTCTTGCACCCCTTCCTG---
-----------------------------------TACATTTGGTAAGTTTCATCATTTTGGCGCAGCATCCTTAAACTT
GACAACTGCACATAGAAATATAAGCACATGAATTCCTTGCTGCAATCTAGATTTGTTAGAACACATTATATATA------
---ATAGTCATA-----GTCATGTAAAATAATTTGCTTTCTCAAAGCA----AGGA-----TTTTGACCAACTTAGTTTA
CTCGTACTGCTAATAATGATTGACCTATGTCATCGCTTCATTGTCTCAAATGCTACCAAAATGGACAAATGTAAATGCCT
CACTTGTTATATTTTGTTCCCATTTCCCAGTGTACAAGAAGCATCACCCACCAGTTCTTGAAGATGAGGTTTGGAGACTG
GAGAAGATCGGCAAGGAAGGAACTTTTCACAAGCGTTTGAATAAGGAGAAGATAGTTACAGTCAAAGATTTTCTCACTTT
ATTGCATCTTGATGCTCCTAGGCTCCGGAAGGTACTATGCACGCTTTTGCAAGGTTTACAGAATTTGCTTATGTATTTAT
ATTCTATATTCTTTGTAGAGTTTATACAAGCTGTTGATGACTTG-TCCATTCTATCCAAGGTTGACATGTATATTTATAT
TG---GTGTTTGACAGCATTATTTTGTAAATCTTTGAATTAGGAAAAACTGGAACCATCAAACTGGATC-----------
---CCTCATTTGGATGGATCAACTGTATTTTATCTATGGTAGTGTAAATGAGGTGTGGCATGTTGTTGCAGATGATAGTG
GTGGCTCAGAAAATATGTAGATTTCCTAACCAACTCTAATGTTAGCATTGTGCAGATATTGGGCACTGGCATGTCAACTA
AGATGTA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GGAGGTTACTATTGAGCATGCAAAAACAACATGTATTCTCAGTGACAAGGTGCACATTTACTATATAGAAAACCCAAGC
AAAACTGCTGTTGTGTTCAATGCTGTTGGAGGAGTGAG--GGTTAATATCGGAGAAGTTTGTTTCTGTTGATGATCTAAC
AGAAAAGGAGAAGGCATTCACTTTTCTTCGTCGTATAAGTTCTTTAGATCAAATTCATTTACCC-TTCTACCAGTTGCAA
CCTAGACCATCTGGTCTT-ACAGCATTTGTTCTTTCTAGGCTGAAGCAAATGCAGCTGTTAAACAAGCATTTGAAGACTG
GAAGAATGTCTCGACCTGCGACAGTGAAACACTTTTGGAGAATCCGTCACAGCTCCTCAATATGAGATCCTCATCTTTAT
GTGAAAACGAATTTTTCCAGTTACCTGCACAAGTTGCCACTGCCGATTTTGATTTAAGCCACTTGGACATACCATCAGGT
GACATTTTCTCTGTGGAACCATTGTGTGCCTTGGATCCTTGTGCGGTGGGAGCTGTAGAGAGCAGTGAAAATAGATTTCA
GCCTGAGCTTCCCCCACTTGGTGGCCATGGACAGCCTCAAGAATCACTTGCTTTAGACAAGTTCTCGAATTCATTGGTTT
TCGAGGAGAGCACCAGTCATGCCTCATTCAACGAAGAAGACTACTATTGCCGTCCAGATCC---TCCCCCGGTATCCTTC
GAC--GCAAGATCTCGGCGCTGCGCTGAAGGGATTCATCGCGACAATATCAAAGCCCAAGCCATATAGAGGATGGAGGAC
ATTGTCATATGTTATAGGATGGATATTCTACACCAAGAGGATGGCCGCTCAGAAGAGGAAGAAACCCGGGAAATGATGAT
TTTCATTTGCCTGTGGTTGATTAGTTAAAA-GATTGTGAGATATAGAAGTGGAGGAAAGGAAAGCATGTACAAATGAGTG
GTTGGTTATCTTTCGGATCTTTTCATTTTGCGTGCTTTTGTTGCTGGTGTTCTCGAGCCGTTTTATCAGCGAGAGTGACA
CCTCTAAATAATCAGATG--------------------------------------------------------------
------------------------------------------------------------------AGCTCTGTA-----
--------------------------------------------------------------CAGTACATAAATCCGTAA
ATATGAATGGTGGTGCTATTGTATGGGCTATTATCAGCGTGTTAGGTATT------------------GTCAATTTGGTC
CATAACTT-GTTGCCACATGTTTTGTGGTATGACATTACATGTGCGCATATGCTGCCCAAGTATGAATGAAGTCTACAGG
TGCAGAACCAAATGGATTGTGATGTGCTGCCAAATTCAGGATCCATACTCCAAACATTTGTTGGATTTAAAGTTTCAAAG
CAGCGACGGACATTTCTGTTGTGATGTACC-TTCAGGTTTTTACCACGTAGTACATGACTTTC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr1B_2001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GAGTAGATC
TCAATCATGCTTTTTAGAAGTCACTGTAATGAATTAGTTTTTCTAGTATTGTA---------------------------
--------------------------------------------------------TTGTTCTACATTCAGAACCATTCA
ATCCCTGGAAGACTAAGCAACG---ATTCATTCATATGGACATTTTGTTGTTCATTTTCAGAAGAT-------AATATTT
TCAGCCAAAGCTGTTGCTTGCATC-TAAAGCTTGACCTAATCAGTGCTGTTTTCAGCCATGTTTTCGTTTTAAGTTGTTC
AGTGGTGGCCTTGATGCTTAATTGAAGTCAATTTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCTGC
TATGACGACAAGGTATTGTATATGACACCT--TGTGACAAGCTTTTAGGTTCGTAAACTGATGCAGATT-TATCTAACCA
CCTAGTTTTT---T-----T-CCTTTTTCATTAGAAGTCCCACATACACTGTTCCATCGTCATCGAAAAATTTGCAGATC
CAATTCACGACTAGGCTTTCTCTTCCAATTTTCACTGGCTCCAAGGTTGAAGGT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GAGGGTACCTTAAGTATTGCTCTAGTTGACACTTTGACCAGAGAGGTTGTAGTAATG
GGTAAGGAGTCCCTGTTGAAGGTTGAATTTGTAGTTCTAGAGGGTGACTTTGAACTTTGAAGACGGAGAAGGCAATGACT
GGACAGCTCAGGAGTTCAATACTAACATTGTTAGAGAAAGACAAGGTAAACGGCCCTTCCTTTCTGGAGATGTGTTTGTT
GGTCTTGATAGAGGCATTGGTAGAGTGGGAGATGTATCATTCACAGATAACTCCAGCTGGACACGCAGCCGAAAGTTCAG
G-----TTAGGTGCAAGAACTGAGGATGGTTGTTATAAATTATAATGGCGTAAGAGTACGGGAAGCAAAAACTGAATCAT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTCATGCCGCTTTCAATTGTTATTTGTTTCTTGCACCCCTTTCTG---
-----------------------------------TACATTTGATAAGTTTCATCATTTTGGCGCAGCGTCCTTAAACTT
GACAACTGCACATAGAAATATAAGCACATGAATTCCTTGCTGCAATCTAGATTTGTTAGAACACATTTTATATG------
---ATAGTCATAGTCATGTAAT----AAAAATTTGCTTT--CTCA--A----AGGA-----TTTTGACCAACTTAGTTTA
CTCGTACTGCTAATAATGATTGGCCTATGTCATCGCTTCATTGTCTCAAATGCTACCAAAATGGACAAATGTAAATGCCT
CACTTGTTATATTTTGTTCCCATTTCCCAGTGTACCAGAAGCATCACCCACCAGTTCTTGAAGATGAGGTTTGGAGACTG
GAGAAGATCGGCAAGGAAGGAGCTTTTCACAAGCGTTTGAATAAGGAGAAGATAGTTACAGTCAAAGATTTTCTCACTTT
ATTGCATCTTGATGCTCCTAGGCTCCGGAAGGTACTATGCACTCTTTTGCAAGGTTTACAGAATTTGCTTATGTATTTAT
ATTCTATACTCTTTGTAGAGTTTACACAAGCTGTTGATGACTTG-TCCATTCTATCCAAGGTTGACATGTATATTTATAT
CGAACGTGTTTGGCAGCATTATTTTGTAAATCTTTGAATTAGGAA--------------AAACTGGATC-----------
---CCTCATTTGGATGGATCAACTGTATTTTATCTATGGTAGTGTAAATGAGGTGTGGCATGTTGTTGCAGATGATAGTG
GTGGCTCAGAAAATA-----------------------------------TGCAGATATTGGGCACTGGCATGTCAACTA
AGATGTGGGAAACCTGATCATTTGTCGGGCCGGGTCCGGTTCGGGCCGGGCTTGACAAAGCCCGAAGAAAAAATCCCAAG
CCCGAGTTTGGCCCGGCCTGGCCCGAAGTACACGAACAGTGGCATTTTTATTAAATTAATCATTTTCGTGATATTATATT
AATTTATTATACCTATATTTTGAATAAAACACGTATATATATACACACATTTCGGGCTTTCGGGCCGGGCTTCAGGTCAG
AAAGTGGAGCCTGAGTCCGGCCCGAATGTCGGGCTTAGGGTTCGGGCCGGTGGGCTGGGTTGTCCATGACCAGGTCTAGT
GGGAGGTTACTATTGAGGATGCAAAAACAACATGTATACTCAGTGACAAGTTGCTTGTTTACTATCTAGAAAACCCAAGC
AAAACTGCAGTTGTGTTCAATGCTGTTGGAGAAGTGAGAGGGTTAATATCGGAGAAGTTTGTTTCTGTTGATGATCTAAC
AGAAAAGGAGAAGGTATTCACTTTTCTTCGTCGTATAAGTTCTTTAGATCAAATTCATTTCCCC-TTGTACCAGTTGCAA
CCTAGACCATCTGGTCTT-ACAGCATTTGTTCTTTCTAGGCTGAAGCAAATGCAGCTGTTAAACAAGCATTTGAAGACTG
GAAGAATGTCTCGACCTGCGACAGTGAAACACTTTTGGAGAATCCGTCATAGCTCCTCAATATGGGATCCTCATCTTTAT
GTGAAAACGAATTTTTCCAGTTACCTGCACAAGTTGCCACTGACGATTTTGAGTTAAGCCACTTGGACATACCATCAGGT
GACATTTTCTCTGTGGAACCATTGTGTGCCTTGGATCCTTGTGCGGTGGGAGCTGTAGAGAGCAGTGAAAATAGATTTCA
GCCTGAGCTTCCCCCACTTGGTGGCCATGGACAGCCTCAAGAATCACTTGCTTTAGACAAGTTGTCGAATTCATTGGTTT
TCGAGGAGAGCACCAGTCATGCCTCATTCAACGAAGAAGACTACTATTGCCGTCCAGATCC---TCCCCCGGTATCCTTT
GACTTGCAAGATCTTGGCGCTGCGCTGAAGGGA--------GACGGTATCAAAGCCCAAGCCATATGTC-----------
-------------ATAGGATGGATATTCTACACCAGGAGGATGGCCGCTCACAAGAGGAAGAAATCCGGGAAATGATGAT
TTTCATTTGCCTGTGGTTGATTAGTTAAAA-GATTGTGAGATATAGAAGTGGAGGAAAGGAAAGCATGTGTACATGAGTG
GTTGGTTATCTTTCGGATCTTTTCATTTTGCGCGCTCTTTTTGCTGGTGTTCTCGAGCCGTTTTATCAGCGAGAG-----
-----------TCAAATGATTGTTTTGCTGGTGTTCTTATGCCGTTTTATCAGCGAAGAGTGACACCTGTAAATAATCAA
ATGATAGTTACTCGTGTCTCAAGCCCGGTTTATCAGCGAGAGTGACACATGTAAATAATCAGATGAAGCTCTGTACAGTA
CTCCCTCCATCCCATAATGTAAGAAGCTTTGTCAAAAAGCTTCTTACATTATGGGACGGAGGCAGTACATAAATCCGTAA
ATATGAATGGTGGTGCTATTG----------------------------T------------------GTCAATTTGGTC
CATAACTT-GTTGCCACATGTTTTGTGTTATGACATTACATGTGCGCACATGCTGCCCAAGTATGAATGAAGTCCACAAG
TGCAAAACCAAATGGATTGTGCTGTGCTGCCAAATTCAGGATCCATACTCCAAACATTTGTTGGATCTAAAGTTTCAAAG
CAGCGACG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------
>chr1A_2001
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------GAGTAGATC
TCAATCATGCTTTTTAGAAGTCACTGTAATGAATTAGTTTTTCTAGTATTGTA---------------------------
--------------------------------------------------------TTGTTCTACATTCAGAACCATTCA
GTCCCTGGAAGACTAAGCAACA---ATTCATTCATATGGACATTTTGTTGTTCATTTTCAGAAGAT-------AATATTT
TCAGACAAAGCTGTTGCTTGCATCATAAAGCTTGACCTAATCAGTGCTGTTTTCAGCCATGTTTTCGTTTTAAGTTG---
-------GCCTTGATGCTTAATTGAAGCCAATTTTTTAGGTTAAAGAAGAAATTGAGTTGGCCCTCGCAAATCATGCTGC
TATGATGACAAGGTATTGTATATGACACCT--TTTGACAAGCTTTTAGGTTTGTAAACTGATGCAGATT-TATCTAACCA
CCTAGTTTTTTTTT-----T-CCTTTTTCATTAGAAGTCCCACATACACTGTTCCATCGACATCGAAAAATTTGCAGCTC
CAATTCACGACTAGGCTTTCTCTTCCAATTTTCACTGGCTCCAAGGTTGAAGGCGAGGGTACCTTAAGGGGAGCCTTGGC
GCAGTGGTAAAGCTGCTGCCTTGTGACCATGAGGTCATGGGTTCAAGTCCTGGAAACAGCCTCTTACAGAAATGTAGGGA
AAGGCTGCGTACTATAGACCCAAAGTGGTCGGACCCTTCCCTGGACCCTGCGCAAGCGGGAGCTACATGCACCAGGTTGC
CCTTTTTTTCCAAGGTTGAAGGCGAGGGTACCTTAAGTATTGCTCTAGTTGACACTTTGACCAGAGAGGTTGTAGTAATG
GGTAAGGAGTCCCTGTTGAAGGTCGAAATTGTAGTTCTAGAGGGTGACTTTGAA-------GACGGAGAAGGCAATGACT
GGATAGCTCAGGAGTTCAATACTAACATCGTTAGAGAAAGACAAGGTAAACAGCCCTTGCTTTCTGGAGATGTGTTTGTT
GGTCTTGATAGAGGCATTGGTAGAGTGGGAGATGTATCATTCACAGA--------GCTGGACATGCAGCCGAAAAGTTCA
GGTTAATTAGGTGCAAGAACTGAGGATGGTTG-------TTATAATGGCGTAAGAGTACCGGAAGCAAAAACTGAATCAT
TTGTGGTAAAGGATCATCGTGGAGAATGTGAGTTCATGCCACTTTCAATTGTTATTTGTTTCTTGCACCCCTTCCTG---
-----------------------------------TACATTTGATAAGTTTCATCATTTTGGCGCAGCGTCCTTAAACTT
GACAACTGCACATATAAATATAAGCACATGAATTCCTTGCTGCAATCTAGAATTGTTAGAACACATTATATATGATAGTC
CCCATAGTCATAGTCATGTAAT----AAAAATTTGCTTT--CTCA--A----AGTAAGGATTTTTGACCAACTTAGTTTA
CTTGTACTGCTAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>SNPs
----S----------------------S-S--------S----S--------------------S-------SSSS-SSS
SS-SSSSSSSS-----S--SS---------------S-------------------------------S-----------
----S------------S---------S-------------S--------S-----S--SS-------S---S---S---
-----SS--------S----------------S-------SS--------------------------------------
--SSSS--------------------------S-S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S------------SSSSSS-------
-------------------------------------------------------------S------------S-----
-------------------------S--------SS-----------------------------S----------S-S-
---------------S---------SSSSSSS-------------S---S-------------------S--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------
------------------------S------------------------------------------------------S
SSSSSSSSSSSSSSSS--S------------S-------------------------S----------------------
---------------------------------------------S---------------------SSS----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S-----S-----------S-----------------S-------------------SS----------------
-------------------------------S-----S-------------S---S---S--------------------
--------S---------------------S-SS----------------------------------------------
----------------------------------------------SSS------------------------S------
------------------------------S-------------S----------S------------------S-----
---------------------------------------------------------------------------SSSS-
---S----------------------------------------------S------------S----------------
-------------------------S---S-S------------------------------S-----------S-----
-------------------------SS-----------S-------S----------------------S----------
-------S-----S---------------------------------------------------------S--S-----
-S-------------------------------------------------------S------------S-------S-
--------------------------------------------S-------------SS---------SSSSS------
--------S--S--------SSSSS-SSSS-SS-SSS-SSSSSSSSS---SSSS---S--SSS--S--SSS---------
---------S-----S----S-------S----------------SS---------------------------------
------------------------------------------------------------------------------S-
-------SS-S----SSS-SS-SSS--------SS-----------S-S-----------S-----SSSSSSS-------
--------S--------------------------------------------------------S----------S---
-------SS--------------SS------S---------------------------------------------S--
---------------SS--------SSS--SS--------S----S-S----------------------S---------
-----------------SS---S--------------------S---------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------S--------S---
----S--------S---------------S-----------------------S--------------------------
--------------------------------------------------------------------------------
----------S-------------------------S-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S----S-------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
-------------------------------------------------------------------SS-SS--------
------------------------------------------------SSSS------------S-----------S---
---------------------------------S--S---------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-----------------------------------S--------------------------------------
-------------------------S------------------------------------------------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--S--------------------S--------------------------S--
---------------------------------------S----------------S-----------------------
------------------S-------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------S----------------------------------------S
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
-------------------------------------S--------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S--------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
-------------S----------------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---S-S------SSSS-SS---------------------SS------
-S------S---SS-----S------S---------------S------SS-----------------------------
------------S-S----S-S-S------------------------------SS----S-------S-----S----S
----S----S--S----S------S---SSS---S-S---------S-S----S----S----SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1806
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TGAGGCCATTTCCTATGCGG----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------
>reverse_3974
--------------------------------------------------------------------------------
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-----------------------------------------------------GGACGGAGAAGGCAATGACT-------
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------------------------------------GTCCCCTGTCCCTTTTCCTG------------------------
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----------------CATTTTGGCACAGCGTCCTT--------------------------------------------
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------------------------------------------------------------------ACCCCTTCCTGCAC
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--------------------------------------------------------GTTTCCCCTTCTACCAGTTGC---
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--------------ATCATTTTGGCACAGCGTCC----------------------------------------------
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---------------------------------------------TGGTATTTGTCAGGTTGGTCTGT------------
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--------------------------------------------
